RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5948
(549 letters)
>gnl|CDD|236286 PRK08560, PRK08560, tyrosyl-tRNA synthetase; Validated.
Length = 329
Score = 305 bits (784), Expect = e-100
Identities = 127/333 (38%), Positives = 199/333 (59%), Gaps = 11/333 (3%)
Query: 20 DEKKQLITRNLQEFLGEDRLNVILKERD-LKIYWGTATTGRPHIAYFVPMSKIADFLRAG 78
+E+ +LITRN +E + E+ L +L+ ++ K Y G +G+ H+ + + M+K+AD +AG
Sbjct: 2 EERLELITRNTEEVVTEEELRELLESKEEPKAYIGFEPSGKIHLGHLLTMNKLADLQKAG 61
Query: 79 CEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPISKLKFVKGTDYQLS 138
+VT+L AD HAYL++ K E + +Y ++ +A+ + K +FV G+++QL
Sbjct: 62 FKVTVLLADWHAYLND-KGDLEEIRKVAEYNKKVFEAL----GLDPDKTEFVLGSEFQLD 116
Query: 139 KEYTLDVYRLSSVITEHDAKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQFGGV 198
KEY L V +L+ T A+++ + +++E P +S L+YP +Q D YL VD GG+
Sbjct: 117 KEYWLLVLKLAKNTTLARARRSMTIMGRRMEEPDVSKLVYPLMQVADIFYLDVDIAVGGM 176
Query: 199 DQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAGG--KMSSSEEDSKIDLLDAPALVKKK 256
DQRKI LA + LP+LGY K + P++ GL GG KMS S+ S I + D+P +++K
Sbjct: 177 DQRKIHMLAREVLPKLGYKKPVCIHTPLLTGLDGGGIKMSKSKPGSAIFVHDSPEEIRRK 236
Query: 257 LKKAFCEPGNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAK 316
+KKA+C PG VE N VL K+ +F P VI R E GG+L + Y+ LE+ +A+
Sbjct: 237 IKKAYCPPGEVEGNPVLEIAKYHIFPRYDP---FVIERPEKYGGDLEYESYEELERDYAE 293
Query: 317 QELHPADLKAAAEFYINRLLEPIRKKFESKELK 349
+LHP DLK A Y+ +LEP+R+ E
Sbjct: 294 GKLHPMDLKNAVAEYLIEILEPVREYLEEGPEL 326
>gnl|CDD|173902 cd00805, TyrRS_core, catalytic core domain of tyrosinyl-tRNA
synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic
core domain. TyrRS is a homodimer which attaches Tyr to
the appropriate tRNA. TyrRS is a class I tRNA
synthetases, so it aminoacylates the 2'-OH of the
nucleotide at the 3' end of the tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formationof the enzyme bound
aminoacyl-adenylate. It contains the class I
characteristic HIGH and KMSKS motifs, which are involved
in ATP binding.
Length = 269
Score = 280 bits (719), Expect = 3e-91
Identities = 99/300 (33%), Positives = 140/300 (46%), Gaps = 43/300 (14%)
Query: 48 LKIYWGTATTG-RPHIAYFVPMSKIADFLRAGCEVTILFADLHAYLDNMK--------AP 98
LK+Y G T H+ + VP+ K+ DF +AG EV +L D A + +
Sbjct: 1 LKVYIGFDPTAPSLHLGHLVPLMKLRDFQQAGHEVIVLIGDATAMIGDPSGKSEERKLLD 60
Query: 99 WELLALRTKYYEESIKAMLESIDVPISKLKFVKGTDYQLSKEYTLDVYRLSSVITEHDAK 158
EL+ KYY++ +KA+L+ I P K KFV +D+ L YTLD RL T +
Sbjct: 61 LELIRENAKYYKKQLKAILDFI--PPEKAKFVNNSDWLL-SLYTLDFLRLGKHFTVNRML 117
Query: 159 KAGAEVVKQ--VEHPLLSGLLYPGLQALDEEYLKVDAQFGGVDQRKIFTLAEKYLPQLGY 216
+ A V+ E S +YP LQA D YL VD Q GG DQR TL + +LGY
Sbjct: 118 RRDAVKVRLEEEEGISFSEFIYPLLQAYDFVYLDVDLQLGGSDQRGNITLGRDLIRKLGY 177
Query: 217 AKRIHFMNPMVPGLAGGKMSSSEEDSK-IDLLDAPALVKKKLKKAFCEPGNVEDNGVLSF 275
K + P++ GL GGKMS SE ++ +LD+P V +K++ AF VL F
Sbjct: 178 KKVVGLTTPLLTGLDGGKMSKSEGNAIWDPVLDSPYDVYQKIRNAFDPD-------VLEF 230
Query: 276 LKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAKQELHPADLKAAAEFYINRL 335
LK F L++ + + LE+ A+ P D K A + +L
Sbjct: 231 LKLFTF--------------------LDYEEIEELEEEHAE-GPLPRDAKKALAEELTKL 269
>gnl|CDD|223240 COG0162, TyrS, Tyrosyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 401
Score = 225 bits (575), Expect = 3e-68
Identities = 76/351 (21%), Positives = 134/351 (38%), Gaps = 33/351 (9%)
Query: 21 EKKQLITRNL-QEFLGEDRLNVILKERDLKIYWGTATTG-RPHIAYFVPMSKIADFLRAG 78
E +LI R L ++ E+ L +L+E L++Y G T H+ + VP+ K+ F AG
Sbjct: 5 ELLELIKRGLIEQITDEEELRKLLEEGPLRVYIGFDPTAPSLHLGHLVPLMKLRRFQDAG 64
Query: 79 CEVTILFADLHAYLDNMKAPWELLALRTK-YYEESIKAMLESIDVPI-SKLKFVKGTDYQ 136
+ +L D A + + E L T+ E+ + + + + + +K +FV +D+
Sbjct: 65 HKPIVLIGDATAMIGDPSGKSEERKLLTRETVLENAETIKKQLGKFLDNKAEFVNNSDWL 124
Query: 137 LSKEYTLDVYRLSSVITEHDAKKAGAEVVKQVE--HPLLSGLLYPGLQALDEEYLKVDAQ 194
Y + + + + + + + YP LQA D YL D Q
Sbjct: 125 KKLNYLDFLRDVGKHFSVNRMLRRDDVKKRLEREQGISFTEFNYPLLQAYDFVYLNKDLQ 184
Query: 195 FGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAGGKM---------SSSEEDSKID 245
GG DQ + +LG K + P++ GL G KM SE+ S D
Sbjct: 185 LGGSDQWGNILAGRDLIRRLGQKKVVGLTTPLLTGLDGKKMGKSEGGAVWLDSEKTSPYD 244
Query: 246 LLDAPALVKKKLKKAFCEPG-NVEDNGVLSFLKHVVFSLLKPGENLV------ITRDENN 298
++ K F + + + K+V+ P +
Sbjct: 245 FYQYWMNIEDADVKRFLKLLTFLSLEEIEEIEKYVLKG---PEPREAKKLLAKEVTKLVH 301
Query: 299 GGNLNFSDYQSLEQVFAK---QELHPADLKA-----AAEFYINRLLEPIRK 341
G + + E++F++ + L PADLK + ++ L P R
Sbjct: 302 GEEAAEAAEEEFEKLFSEGLPENLPPADLKQKLEDGLVDLLVDAGLAPSRS 352
>gnl|CDD|216003 pfam00579, tRNA-synt_1b, tRNA synthetases class I (W and Y).
Length = 291
Score = 216 bits (552), Expect = 4e-66
Identities = 89/303 (29%), Positives = 128/303 (42%), Gaps = 20/303 (6%)
Query: 43 LKERDLKIYWGTATTGRPHIAYFVPMSKIADFLRAGCEVTILFADLHAYLDNM-KAPWEL 101
KER L++Y G TG H+ Y VP+ K+ F +AG EV L DL A + + K+
Sbjct: 1 KKERPLRVYTGFDPTGPLHLGYLVPLMKLVQFQQAGHEVFFLIGDLTAIIGDPSKSEERK 60
Query: 102 LALRTKYYEESIKAMLESIDVPISKLKFVKGTDYQLSKEYTLDVYRLSSVITEHDAKKAG 161
L R + E + KA L + K + V +D+ E + L + + + +
Sbjct: 61 LLSREEVLENA-KAQLACG-LDPEKSEIVNNSDWLEHLELAWLLRDLGNHFSLNRMLQFK 118
Query: 162 AEVVKQVEHP---LLSGLLYPGLQALDEEYLKVDAQFGGVDQRKIFTLAEKYLPQLGY-- 216
+V K+++ L YP LQA D LK D Q GG DQ L +
Sbjct: 119 -DVKKRLKQNPGISLGEFTYPLLQAADILLLKADLQPGGSDQWGHIELGRDLARRFNKKV 177
Query: 217 -AKRIHFMNPMVPGLAGG-KMSSSEEDSKIDLLDAPALVKKKLKKAFCEPGNVEDNGVLS 274
K + NP++ GL GG KMS S +S I L D V KK++KA+ +P +
Sbjct: 178 FKKPVGLTNPLLTGLDGGKKMSKSAGNSAIFLDDEKESVYKKIQKAYTDPD--REVRKDL 235
Query: 275 FLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAKQELHPADLKAAAEFYINR 334
L + N I E G + + L +H DLK AA +N
Sbjct: 236 KLFTELS-------NEEIEILEAFLGKGPKREAEELLAREVTGLVHGGDLKKAAAEAVNA 288
Query: 335 LLE 337
LLE
Sbjct: 289 LLE 291
>gnl|CDD|215329 PLN02610, PLN02610, probable methionyl-tRNA synthetase.
Length = 801
Score = 199 bits (508), Expect = 1e-55
Identities = 88/193 (45%), Positives = 121/193 (62%), Gaps = 6/193 (3%)
Query: 322 ADLKAAAEFYINRLLEPIRKKFESKELKDLTSKAYPPKKPVVESDI-IAPHRLDIRVGKI 380
A +AA + + L+ K+ + + K E +I ++ RLDIRVG I
Sbjct: 593 ARAEAAEAKKLAKQLKKKALSDGGKKKQGKKAGGGGKSKAAAEREIDVS--RLDIRVGLI 650
Query: 381 VEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMANRLVVVLCNLKPAKMRGIE 440
V+ +HPDA++LYVE+ID+GE PRT+VSGLV Y+ +M NR V VLCNLKPA MRGI+
Sbjct: 651 VKAEKHPDADSLYVEEIDVGEGAPRTVVSGLVKYIPLEEMQNRKVCVLCNLKPAAMRGIK 710
Query: 441 SAGMVLCASVEEEGNKKVEPLFVPPSSKAGDKIVVEGYETGAPDEILNPKKKVWEKLQVD 500
S MVL AS + KVE + P S+ G+++ G+E G PD++LNPKKKVWE LQ D
Sbjct: 711 SQAMVLAASNSDH--TKVELVEPPESAAVGERVTFPGFE-GEPDDVLNPKKKVWETLQPD 767
Query: 501 LKTSSEGIAQWQG 513
L T+SE +A ++
Sbjct: 768 LHTNSELVACYKD 780
>gnl|CDD|232889 TIGR00234, tyrS, tyrosyl-tRNA synthetase. This tyrosyl-tRNA
synthetase model starts picking up tryptophanyl-tRNA
synthetases at scores of 0 and below. The proteins found
by this model have a deep split between two groups. One
group contains bacterial and organellar eukaryotic
examples. The other contains archaeal and cytosolic
eukaryotic examples [Protein synthesis, tRNA
aminoacylation].
Length = 377
Score = 178 bits (454), Expect = 6e-51
Identities = 95/376 (25%), Positives = 147/376 (39%), Gaps = 53/376 (14%)
Query: 20 DEKKQLITRNLQEFLGEDRLNVI-LKERDLKIYWGTATTG-RPHIAYFVPMSKIADFLRA 77
+ L+ + E + ++ L ER +K+Y G T H+ + VP+ K+ DF +A
Sbjct: 2 NNILLLLKKRGLEVQVPEEEELLKLLERKIKLYVGFDPTAPSLHLGHLVPLLKLRDFQQA 61
Query: 78 GCEVTILFADLHAYLDNMKAPWELLALRTK-----YYEESIKAMLESIDVPISKLKFVKG 132
G EV +L D A + + E L T+ E K + +D K KFV
Sbjct: 62 GHEVIVLLGDATALIGDPSGKSEERKLLTREEVQENAENIKKQIARFLDF--EKAKFVNN 119
Query: 133 TDYQLSKEYTLDVYRLSSVITEHDAKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVD 192
+++ L Y + L + + + + A + LS +YP LQA D YL VD
Sbjct: 120 SEWLLKLNYIDFIRDLGKIFSVNRMLRRDAFSSRLERGISLSEFIYPLLQAYDFVYLNVD 179
Query: 193 AQFGGVDQ----RKIFTLAEKYLPQLGYAKRIHFMNP---MVPGL-AGGKMSSSEE--DS 242
Q GG DQ K L + LP LG+ + + P G GG +S E D
Sbjct: 180 LQIGGSDQWGNILKGRDLIRRNLPSLGFGLTVPLLTPADGEKMGKSEGGAVSLDEGKYDF 239
Query: 243 KIDLLDAPALVKKKLKKAFCEPGN----------------VEDNGVLSFLKHV------- 279
++ P KK+ K F G V++N K+V
Sbjct: 240 YQFWINTPDEDVKKILKLFTFLGLEEIEALVELKGPSPREVKENLAKEITKYVHGEEAAL 299
Query: 280 --------VFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAKQELHPADLKAAAEF- 330
+FS + L I R E GG++ +D L +F + D+K +
Sbjct: 300 AAEEISEALFSGGLNPDELPIFRPEKFGGDITLADLLVLSGLFPSKSEARRDIKQGGVYI 359
Query: 331 --YINRLLEPIRKKFE 344
+ LEPIRK+ +
Sbjct: 360 NGEKVKDLEPIRKEAD 375
>gnl|CDD|239198 cd02799, tRNA_bind_EMAP-II_like, tRNA-binding-domain-containing
EMAP2-like proteins. This family contains a diverse
fraction of tRNA binding proteins, including
Caenorhabditis elegans methionyl-tRNA synthetase
(CeMetRS), human tyrosyl- tRNA synthetase (hTyrRS),
Saccharomyces cerevisiae Arc1p, human p43 and EMAP2.
CeMetRS and hTyrRS aminoacylate their cognate tRNAs.
Arc1p is a transactivator of yeast methionyl-tRNA and
glutamyl-tRNA synthetases. This domain has general tRNA
binding properties. In a subset of this family this
domain has the added capability of a cytokine. For
example the p43 component of the Human aminoacyl-tRNA
synthetase complex is cleaved to release EMAP-II
cytokine. EMAP-II has multiple activities during
apoptosis, angiogenesis and inflammation and
participates in malignant transformation. A EMAP-II-like
cytokine also is released from hTyrRS upon cleavage. The
active cytokine heptapeptide locates to this domain.
Length = 105
Score = 169 bits (430), Expect = 8e-51
Identities = 67/105 (63%), Positives = 82/105 (78%), Gaps = 2/105 (1%)
Query: 370 PHRLDIRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMANRLVVVLC 429
P RLDIRVGKI++V +HPDA++LYVE+IDLGEE PRTIVSGLV +V M NRLVVVLC
Sbjct: 3 PSRLDIRVGKILKVRKHPDADSLYVEEIDLGEEEPRTIVSGLVKFVPLEQMQNRLVVVLC 62
Query: 430 NLKPAKMRGIESAGMVLCASVEEEGNKKVEPLFVPPSSKAGDKIV 474
NLKP KMRG++S GMVLCAS ++KVE L P +K G+++
Sbjct: 63 NLKPRKMRGVKSQGMVLCAS--NADHEKVELLEPPEGAKPGERVT 105
>gnl|CDD|240282 PTZ00126, PTZ00126, tyrosyl-tRNA synthetase; Provisional.
Length = 383
Score = 168 bits (427), Expect = 5e-47
Identities = 107/354 (30%), Positives = 177/354 (50%), Gaps = 21/354 (5%)
Query: 13 TSPSLSFDEKKQLITRNLQEFLGEDRLNVILKERDLKI-YWGTATTGRPHIAYFVPMSKI 71
LS +E+ +L +E + + L +LK ++ I Y G +GR HIA + +
Sbjct: 31 PQSKLSLEERVKLCLSIGEECIQPEELRELLKLKERPICYDGFEPSGRMHIAQGILKAIN 90
Query: 72 ADFL-RAGCEVTILFADLHAYLDNMKAPWELLALRT--KYYEESIKAMLESIDVPISKLK 128
+ L +AGC AD A L+N K +L +R +Y+ E KA + + ++
Sbjct: 91 VNKLTKAGCVFVFWVADWFALLNN-KMGGDLEKIRKVGEYFIEVWKA----AGMDMDNVR 145
Query: 129 FVKGTDY--QLSKEYTLDVYRLSSVITEHDAKKAGAEVVKQVEHPL-LSGLLYPGLQALD 185
F+ ++ + +Y L V ++ K+ + + + +LYP +Q D
Sbjct: 146 FLWASEEINKNPNDYWLRVMDIARSFNITRIKRCSQIMGRSEGDEQPCAQILYPCMQCAD 205
Query: 186 EEYLKVDAQFGGVDQRKIFTLAEKY--LPQLGYAKRIHFMNPMVPGLAGG--KMSSSEED 241
YLK D G+DQRK+ LA +Y ++ K I + M+PGL G KMS S+ +
Sbjct: 206 IFYLKADICQLGMDQRKVNMLAREYCDKKKIKK-KPIILSHHMLPGLLEGQEKMSKSDPN 264
Query: 242 SKIDLLDAPALVKKKLKKAFCEPGNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGN 301
S I + D+ V +K+KKA+C PG +E N +L++ K +VF + R E NGG+
Sbjct: 265 SAIFMEDSEEDVNRKIKKAYCPPGVIEGNPILAYFKSIVFPAF--NS-FTVLRKEKNGGD 321
Query: 302 LNFSDYQSLEQVFAKQELHPADLKAAAEFYINRLLEPIRKKFESK-ELKDLTSK 354
+ ++ Y+ LE+ + LHP DLK A Y+N +L+P+R F++ E K L S+
Sbjct: 322 VTYTTYEELEKDYLSGALHPGDLKPALAKYLNLMLQPVRDHFQNNPEAKSLLSE 375
>gnl|CDD|239066 cd02153, tRNA_bindingDomain, The tRNA binding domain is also known
as the Myf domain in literature. This domain is found in
a diverse collection of tRNA binding proteins, including
prokaryotic phenylalanyl tRNA synthetases (PheRS),
methionyl-tRNA synthetases (MetRS), human tyrosyl-tRNA
synthetase(hTyrRS), Saccharomyces cerevisiae Arc1p,
Thermus thermophilus CsaA, Aquifex aeolicus Trbp111,
human p43 and human EMAP-II. PheRS, MetRS and hTyrRS
aminoacylate their cognate tRNAs. Arc1p is a
transactivator of yeast methionyl-tRNA and glutamyl-tRNA
synthetases. The molecular chaperones Trbp111 and CsaA
also contain this domain. CsaA has export related
activities; Trbp111 is structure-specific recognizing
the L-shape of the tRNA fold. This domain has general
tRNA binding properties. In a subset of this family
this domain has the added capability of a cytokine. For
example the p43 component of the Human aminoacyl-tRNA
synthetase complex is cleaved to release EMAP-II
cytokine. EMAP-II has multiple activities during
apoptosis, angiogenesis and inflammation and
participates in malignant transformation. An
EMAP-II-like cytokine is released from hTyrRS upon
cleavage. The active cytokine heptapeptide locates to
this domain. For homodimeric members of this group which
include CsaA, Trbp111 and Escherichia coli MetRS this
domain acts as a dimerization domain.
Length = 99
Score = 130 bits (329), Expect = 2e-36
Identities = 47/99 (47%), Positives = 61/99 (61%)
Query: 375 IRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMANRLVVVLCNLKPA 434
+RVGKIVE HP+A+ LYV K+D+GEE PR IVSG N ++ + VVV NLKP
Sbjct: 1 LRVGKIVEAEPHPNADKLYVLKVDIGEEKPRQIVSGAANVYPPEELVGKKVVVAVNLKPK 60
Query: 435 KMRGIESAGMVLCASVEEEGNKKVEPLFVPPSSKAGDKI 473
K+RG+ES GM+L A V L +P + GD+I
Sbjct: 61 KLRGVESEGMLLSAEELGLEEGSVGILELPEDAPVGDRI 99
>gnl|CDD|216589 pfam01588, tRNA_bind, Putative tRNA binding domain. This domain is
found in prokaryotic methionyl-tRNA synthetases,
prokaryotic phenylalanyl tRNA synthetases the yeast GU4
nucleic-binding protein (G4p1 or p42, ARC1), human
tyrosyl-tRNA synthetase, and endothelial-monocyte
activating polypeptide II. G4p1 binds specifically to
tRNA form a complex with methionyl-tRNA synthetases. In
human tyrosyl-tRNA synthetase this domain may direct
tRNA to the active site of the enzyme. This domain may
perform a common function in tRNA aminoacylation.
Length = 95
Score = 125 bits (316), Expect = 1e-34
Identities = 46/98 (46%), Positives = 62/98 (63%), Gaps = 3/98 (3%)
Query: 375 IRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMANRLVVVLCNLKPA 434
+RVGK++E +HP+A+ L V K+D+GEE R IVSG VN ++ +LVVV+ NLKPA
Sbjct: 1 LRVGKVLEAEKHPNADKLLVLKVDVGEEE-RQIVSGAVNVYPPEELVGKLVVVVANLKPA 59
Query: 435 KMRGIESAGMVLCASVEEEGNKKVEPLFVPPSSKAGDK 472
K+RG+ES GM+L A EE V L P G +
Sbjct: 60 KLRGVESEGMILSA--EELDGGSVGLLEPPGDVPPGTR 95
>gnl|CDD|223151 COG0073, ARC1, EMAP domain [General function prediction only].
Length = 123
Score = 99.7 bits (249), Expect = 4e-25
Identities = 43/119 (36%), Positives = 63/119 (52%), Gaps = 6/119 (5%)
Query: 360 KPVVESDIIAPHRLDIRVGKIVEVSRHPDAEALYVEKIDLGE-ENPRTIVSGLVNYVKEG 418
V E +I ++D+RVGK+VE HP+A+ L V K+DLG+ + PR IV G N+
Sbjct: 6 LEVEEIEIDDFAKVDLRVGKVVEAEPHPNADKLLVLKVDLGDEKEPRQIVCGAPNFYAGE 65
Query: 419 DMANRLVVVLCN---LKPAKMRGIESAGMVLCASVEEEGNKKVEPLFVPPSS-KAGDKI 473
+ V + N LKPAK+RG+ES GM+L A E + + + G K+
Sbjct: 66 KLVGAKVGAVLNGGKLKPAKLRGVESEGMLLSAE-ELGLSDENVGILTLDEGVPPGTKV 123
>gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed.
Length = 648
Score = 107 bits (271), Expect = 1e-24
Identities = 43/142 (30%), Positives = 71/142 (50%), Gaps = 11/142 (7%)
Query: 339 IRKKFESKELKDLTSKAYPPKKPVVESDIIAPH-------RLDIRVGKIVEVSRHPDAEA 391
I + E +K+ + P + E P ++++RV +++E + ++
Sbjct: 510 IDVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPEITIDDFDKVELRVAEVLEAEKVEKSDK 569
Query: 392 LYVEKIDLGEENPRTIVSGLVNYVKEGDMANRLVVVLCNLKPAKMRGIESAGMVLCASVE 451
L ++DLGEE PR IVSG+ + ++ + VVV+ NLKPAK+ G ES GM+L A
Sbjct: 570 LLKLQVDLGEEEPRQIVSGIAKFYPPEELVGKKVVVVANLKPAKLMGEESQGMILAA--- 626
Query: 452 EEGNKKVEPLFVPPSSKAGDKI 473
E + K+ L V G K+
Sbjct: 627 -EDDGKLTLLTVDKEVPNGSKV 647
>gnl|CDD|239197 cd02798, tRNA_bind_CsaA, tRNA-binding-domain-containing CsaA-like
proteins. CsaA is a molecular chaperone with export
related activities. CsaA has a putative tRNA binding
activity. The functional unit of CsaA is a homodimer and
this domain acts as a dimerization domain.
Length = 107
Score = 93.8 bits (234), Expect = 4e-23
Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Query: 372 RLDIRVGKIVEVSRHPDA-EALYVEKIDLGEENPRTIVSGLVNYVKEGDMANRLVVVLCN 430
++D+RVG IVEV P+A + Y K+D GE + + + Y K ++ R VV + N
Sbjct: 8 KVDLRVGTIVEVEDFPEARKPAYKLKVDFGEIGVKQSSAQITKYYKPEELIGRQVVAVVN 67
Query: 431 LKPAKMRGIESAGMVLCASVEEEGNKKVEPLFVPPSSKAGDKI 473
P ++ G+ S +VL A E + P G K+
Sbjct: 68 FPPKQIAGVLSEVLVLGADDEGGEVVLLVP---DREVPNGAKV 107
>gnl|CDD|234655 PRK00133, metG, methionyl-tRNA synthetase; Reviewed.
Length = 673
Score = 101 bits (255), Expect = 1e-22
Identities = 39/142 (27%), Positives = 64/142 (45%), Gaps = 4/142 (2%)
Query: 332 INRLLEPIRKKFESKELKDLTSKAYPPKKPVVESDIIAPHRLDIRVGKIVEVSRHPDAEA 391
I L+E ++ +K + + ++D+RV KIVE + A+
Sbjct: 535 IEALIEASKEAAAAKAAAAAAAAPLAEEPIAETISFDDFAKVDLRVAKIVEAEKVEGADK 594
Query: 392 LYVEKIDLGEENPRTIVSGLVNYVKEGDMANRLVVVLCNLKPAKMRGIESAGMVLCASVE 451
L +DLGEE R + SG+ + ++ +LVV++ NL P KM+ S GMVL A
Sbjct: 595 LLKLTLDLGEE-TRQVFSGIKSAYDPEELVGKLVVMVANLAPRKMKFGVSEGMVLAA--- 650
Query: 452 EEGNKKVEPLFVPPSSKAGDKI 473
G + L +K G ++
Sbjct: 651 GPGGGDLFLLEPDEGAKPGMRV 672
>gnl|CDD|239199 cd02800, tRNA_bind_EcMetRS_like, tRNA-binding-domain-containing
Escherichia coli methionyl-tRNA synthetase
(EcMetRS)-like proteins. This family includes EcMetRS
and Aquifex aeolicus Trbp111 (AaTrbp111). This domain
has general tRNA binding properties. MetRS
aminoacylates methionine transfer RNAs (tRNAmet).
AaTrbp111 is structure-specific molecular chaperone
recognizing the L-shape of the tRNA fold. AaTrbp111
plays a role in nuclear trafficking of tRNAs. The
functional unit of EcMetRs and AaTrbp111 is a homodimer,
this domain acts as the dimerization domain.
Length = 105
Score = 91.8 bits (229), Expect = 2e-22
Identities = 39/102 (38%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 372 RLDIRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMANRLVVVLCNL 431
++D+RVGK++E R ++ L +DLGEE R IVSG+ + ++ + VVV+ NL
Sbjct: 8 KVDLRVGKVLEAERVEGSDKLLKLTVDLGEE-ERQIVSGIAKFYPPEELVGKKVVVVANL 66
Query: 432 KPAKMRGIESAGMVLCASVEEEGNKKVEPLFVPPSSKAGDKI 473
KP K+RG+ES GM+L A E+ G K+ L + G ++
Sbjct: 67 KPRKLRGVESQGMILAA--EDGGKLKL--LTPDEEVEPGSRV 104
>gnl|CDD|173541 PTZ00348, PTZ00348, tyrosyl-tRNA synthetase; Provisional.
Length = 682
Score = 98.4 bits (245), Expect = 1e-21
Identities = 104/358 (29%), Positives = 166/358 (46%), Gaps = 44/358 (12%)
Query: 17 LSFDEKKQLITRNLQEFLGEDRL-NVILKERDLKIYWGTATTGRPHIAYFVPMS-KIADF 74
++ DE+ +L+ +E + E L N+I K+ ++ Y G +GR HIA + + +
Sbjct: 1 MNTDERYKLLRSVGEECIQESELRNLIEKKPLIRCYDGFEPSGRMHIAQGIFKAVNVNKC 60
Query: 75 LRAGCEVTILFADLHAYLDNMKAPWELLALRT--KYYEESIKAMLESIDVPISKLKFVKG 132
+AGCE AD A L N K EL +R +Y E KA +D K+ F+
Sbjct: 61 TQAGCEFVFWVADWFA-LMNDKVGGELEKIRIVGRYLIEVWKAAGMDMD----KVLFLWS 115
Query: 133 TDYQLSKEYT-----LDVYRLSSVITEHDAKKAGAEVVKQVEHPLLSGLLYPGLQALDEE 187
++ + T LD+ R +++ KK + K + +LYP +Q D
Sbjct: 116 SEEITNHANTYWRTVLDIGRQNTIAR---IKKCCTIMGKTEGTLTAAQVLYPLMQCADIF 172
Query: 188 YLKVDAQFGGVDQRKIFTLAEKYLPQLGYA-KRIHFMNPMVPGLAGG--KMSSSEEDSKI 244
+LK D G+DQRK+ LA +Y +G K + + M+ GL G KMS S+ DS I
Sbjct: 173 FLKADICQLGLDQRKVNMLAREYCDLIGRKLKPVILSHHMLAGLKQGQAKMSKSDPDSAI 232
Query: 245 DLLDAPALVKKKLKKAFC--------------EPGNVED-NGVLSFLKHVVFSLLKPGEN 289
+ D V +K+++A+C P +D N VL + + VV++ +PG
Sbjct: 233 FMEDTEEDVARKIRQAYCPRVKQSASEITDDGAPVATDDRNPVLDYFQCVVYA--RPGAV 290
Query: 290 LVITRDENNGGNLNFSDYQSLEQVFAKQELHPADLKAAAEFYINRLLEPIRKKFESKE 347
I +G ++ Y+ LEQ F E+ LK+ +N LLEP+R+ F S
Sbjct: 291 ATI-----DGTT--YATYEDLEQAFVSDEVSEEALKSCLIDEVNALLEPVRQHFASNP 341
Score = 53.0 bits (127), Expect = 3e-07
Identities = 31/75 (41%), Positives = 43/75 (57%), Gaps = 5/75 (6%)
Query: 253 VKKKLKKAFCEPGNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQ 312
+++K+KKA+ P N E N V+S +H LL L I R E NGGN+ ++ ++L
Sbjct: 575 IRRKIKKAYSAP-NEEANPVISVAQH----LLAQQGALSIERGEANGGNVAYNTPEALVA 629
Query: 313 VFAKQELHPADLKAA 327
LHPADLKAA
Sbjct: 630 DCGSGALHPADLKAA 644
>gnl|CDD|232958 TIGR00399, metG_C_term, methionyl-tRNA synthetase C-terminal
region/beta chain. The methionyl-tRNA synthetase (metG)
is a class I amino acyl-tRNA ligase. This model
describes a region of the methionyl-tRNA synthetase that
is present at the C-terminus of MetG in some species (E.
coli, B. subtilis, Thermotoga maritima, Methanobacterium
thermoautotrophicum), and as a separate beta chain in
Aquifex aeolicus. It is absent in a number of other
species (e.g. Mycoplasma genitalium, Mycobacterium
tuberculosis), while Pyrococcus horikoshii has both a
full length MetG and a second protein homologous to the
beta chain only. Proteins hit by This model should
called methionyl-tRNA synthetase beta chain if and only
if the model metG hits a separate protein not also hit
by This model [Protein synthesis, tRNA aminoacylation].
Length = 137
Score = 85.6 bits (212), Expect = 7e-20
Identities = 48/130 (36%), Positives = 75/130 (57%), Gaps = 6/130 (4%)
Query: 344 ESKELKDLTSKAYPPKKPVVESDIIAPHRLDIRVGKIVEVSRHPDAEALYVEKIDLGEEN 403
+ KE KD KA P+K + D ++D+RVGKI++ R ++ L K+DLG+E
Sbjct: 13 KKKEKKDEGEKALEPQKETITIDDFE--KVDLRVGKILKAERVEKSDKLLKLKLDLGDEK 70
Query: 404 PRTIVSGLVNYVKEGDMANRLVVVLCNLKPAKMRGIESAGMVLCASVEEEGNKKVEPLFV 463
R IVSG+ Y ++ + V+V+ NLKPAK+ G++S GM+L A E+ K + L
Sbjct: 71 -RQIVSGIAGYYTPEELVGKKVIVVANLKPAKLFGVKSEGMILAA---EDDGKVLFLLSP 126
Query: 464 PPSSKAGDKI 473
+ AG++I
Sbjct: 127 DQEAIAGERI 136
>gnl|CDD|182232 PRK10089, PRK10089, tRNA-binding protein; Provisional.
Length = 112
Score = 73.3 bits (181), Expect = 6e-16
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 372 RLDIRVGKIVEVSRHPDAEAL-YVEKIDLGEE-NPRTIVSGLVNYVKEGDMANRLVVVLC 429
++DIRVG IVE P+A Y ID GEE + + + + ++ + VV +
Sbjct: 11 KVDIRVGTIVEAEPFPEARKPAYKLWIDFGEEIGVKQSSAQITPHYTPEELIGKQVVAVV 70
Query: 430 NLKPAKMRGIESAGMVLCASVEEE 453
N P ++ G S +VL E+
Sbjct: 71 NFPPKQIAGFMSEVLVLGFEDEDG 94
>gnl|CDD|239196 cd02796, tRNA_bind_bactPheRS, tRNA-binding-domain-containing
prokaryotic phenylalanly tRNA synthetase (PheRS) beta
chain. PheRS aminoacylate phenylalanine transfer RNAs
(tRNAphe). PheRSs belong structurally to class II
aminoacyl tRNA synthetases (aaRSs) but, as they
aminoacylate the 2'OH of the terminal ribose of tRNA
they belong functionally to class 1 aaRSs. This domain
has general tRNA binding properties and is believed to
direct tRNAphe to the active site of the enzyme.
Length = 103
Score = 68.7 bits (169), Expect = 2e-14
Identities = 36/85 (42%), Positives = 49/85 (57%), Gaps = 13/85 (15%)
Query: 375 IRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMANRLVVVLCN---- 430
+ VGK++EV HP+A+ L V K+D+GE P IV G N V+ GD VV L
Sbjct: 1 VVVGKVLEVEPHPNADKLNVCKVDIGENKPLQIVCGAPN-VRAGDKV---VVALPGAVLP 56
Query: 431 ----LKPAKMRGIESAGMVLCASVE 451
+K K+RG+ES GM LC++ E
Sbjct: 57 GGLKIKKRKLRGVESEGM-LCSAKE 80
>gnl|CDD|232990 TIGR00472, pheT_bact, phenylalanyl-tRNA synthetase, beta subunit,
non-spirochete bacterial. Every known example of the
phenylalanyl-tRNA synthetase, except the monomeric form
of mitochondrial, is an alpha 2 beta 2 heterotetramer.
The beta subunits break into two subfamilies that are
considerably different in sequence, length, and pattern
of gaps. This model represents the subfamily that
includes the beta subunit from Bacteria other than
spirochetes, as well as a chloroplast-encoded form from
Porphyra purpurea. The chloroplast-derived sequence is
considerably shorter at the amino end, however, so This
model was built in fragment mode [Protein synthesis,
tRNA aminoacylation].
Length = 797
Score = 69.6 bits (171), Expect = 2e-12
Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 17/87 (19%)
Query: 375 IRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGD----------MANRL 424
+ VGK++EV HP+A+ L V K+D+GE+ IV G N V+ G + N L
Sbjct: 46 VVVGKVLEVEPHPNADKLKVCKVDIGEKEMLQIVCGAPN-VEAGKKVAVALPGAKLPNGL 104
Query: 425 VVVLCNLKPAKMRGIESAGMVLCASVE 451
+ K +K+RG+ES GM LC+ E
Sbjct: 105 KI-----KKSKLRGVESEGM-LCSESE 125
>gnl|CDD|232888 TIGR00233, trpS, tryptophanyl-tRNA synthetase. This model
represents tryptophanyl-tRNA synthetase. Some members of
the family have a pfam00458 domain amino-terminal to the
region described by this model [Protein synthesis, tRNA
aminoacylation].
Length = 327
Score = 66.6 bits (163), Expect = 6e-12
Identities = 79/336 (23%), Positives = 126/336 (37%), Gaps = 57/336 (16%)
Query: 50 IYWGTATTGRPHIAYFVPMSKIADFLRAGCEVTILFADLHAYLDNMKAPWELLALRTKYY 109
+ G +G+ H+ +++ + + G E+ I ADLHA K
Sbjct: 5 VLTGIQPSGKMHLGHYLGAIQTKWLQQFGVELFICIADLHAIT----VKQTDPDALRKAR 60
Query: 110 EESIKAMLE-SIDVPISKLKFVKGTDYQLSKEYTLDVYRLSSVITEHDAKKAGAEVVKQV 168
EE L +D K +DY E+ + LS +T + K+ K
Sbjct: 61 EELAADYLAVGLD--PEKTFIFLQSDYP---EHYELAWLLSCQVTFGELKRMTQFKDKSQ 115
Query: 169 EHPLLSGLL-YPGLQALDEEYLKVDAQFGGVDQRKIFTL----AEK---------YLPQL 214
+ GLL YP LQA D + D G+DQ + L AE+ P+
Sbjct: 116 AENVPIGLLSYPVLQAADILLYQADLVPVGIDQDQHLELTRDLAERFNKKFKNFFPKPES 175
Query: 215 GYAKRIHFMNPMVPGLAGGKMSSSEEDSKIDLLDAPALVKKKLKKAFCEPGNV------E 268
+K F + GL+G KMS S+ +S I L D P +KKK++KA + G V E
Sbjct: 176 LISK---FFPR-LMGLSGKKMSKSDPNSAIFLTDTPKQIKKKIRKAATDGGRVTLFEHRE 231
Query: 269 DNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQS-LEQVFAK---QELHPADL 324
GV + L V++ L F L++++ +L +
Sbjct: 232 KPGVPNLL--VIYQYL-----------------SFFLIDDDKLKEIYEAYKSGKLGYGEC 272
Query: 325 KAAAEFYINRLLEPIRKKFESKELKDLTSKAYPPKK 360
K A + L+ I+++ + L P K
Sbjct: 273 KKALIEVLQEFLKEIQERRAEIAEEILDKILEPGAK 308
>gnl|CDD|234804 PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta;
Reviewed.
Length = 791
Score = 67.1 bits (165), Expect = 1e-11
Identities = 39/99 (39%), Positives = 56/99 (56%), Gaps = 17/99 (17%)
Query: 363 VES-DIIAPHRLDIRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMA 421
VE + +A + VGK++E +HP+A+ L V ++D+GEE P IV G N V+ GD
Sbjct: 32 VEGVEDVAAGLSGVVVGKVLECEKHPNADKLRVCQVDVGEE-PLQIVCGAPN-VRAGD-- 87
Query: 422 NRLVVV------LCN---LKPAKMRGIESAGMVLCASVE 451
V V L +K AK+RG+ES GM LC++ E
Sbjct: 88 --KVPVALPGAVLPGGFKIKKAKLRGVESEGM-LCSASE 123
>gnl|CDD|237037 PRK12285, PRK12285, tryptophanyl-tRNA synthetase; Reviewed.
Length = 368
Score = 64.1 bits (157), Expect = 5e-11
Identities = 71/267 (26%), Positives = 105/267 (39%), Gaps = 46/267 (17%)
Query: 18 SFDEKKQLITRNLQEFLGEDRLNVILKE----RDLKIYWGTATTGRPHIAYFVPMSKIAD 73
E L+ R + G + IL+ + +Y G +G HI + + ++
Sbjct: 35 ELPEPHPLMRRGI--IFGHRDYDKILEAYRNGKPFAVYTGFMPSGPMHIGHKMVFDELKW 92
Query: 74 FLRAGCEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESI-DVPISKLKFVKG 132
G V I AD AY A R +EE+ + E I D+ K
Sbjct: 93 HQEFGANVYIPIADDEAY-----------AARGLSWEETREWAYEYILDLIALGFDPDKT 141
Query: 133 TDYQLSKEYTLDVYRLSSVITEHDAKKAGAEVVKQV----EHPLLSGLLYPGLQALDEEY 188
Y S+ VY L+ + AKK +K + + + YP QA D +
Sbjct: 142 EIYFQSENI--KVYDLAFEL----AKKVNFSELKAIYGFTGETNIGHIFYPATQAADILH 195
Query: 189 LKVDAQFG------GVDQ----RKIFTLAEKYLPQLGYAK--RIH--FMNPMVPGLAGGK 234
+++ G+DQ R +AE+ G+ K + FM PGL GGK
Sbjct: 196 PQLEEGPKPTLVPVGIDQDPHIRLTRDIAERLHGGYGFIKPSSTYHKFM----PGLTGGK 251
Query: 235 MSSSEEDSKIDLLDAPALVKKKLKKAF 261
MSSS+ +S I L D P VKKK+ KA
Sbjct: 252 MSSSKPESAIYLTDDPETVKKKIMKAL 278
>gnl|CDD|223258 COG0180, TrpS, Tryptophanyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 314
Score = 61.8 bits (151), Expect = 2e-10
Identities = 77/338 (22%), Positives = 118/338 (34%), Gaps = 93/338 (27%)
Query: 50 IYWGTATTGRPHIAYFVPMSKIADFLRAGC-EVTILFADLHAYLDNMKAPWELLALRTKY 108
+ G +G+ H+ ++ + L+ E ADLHA E L T
Sbjct: 8 VLSGIQPSGKLHLGNYLGAIRNWVLLQEEYYECFFFIADLHAITVRQDPTEEDLRQAT-- 65
Query: 109 YEESIKAMLESIDVPISKLKFVKGTDYQLS--------KEYTLDVYRLSSVITEHDAKKA 160
E L G D + S E+ + LS V + ++
Sbjct: 66 -REVAADYLAV------------GLDPEKSTIFLQSEVPEHAELAWLLSCVTNFGELERM 112
Query: 161 ---GAEVVKQVEHPLLSGLLYPGLQALD-----EEYLKVDAQFGGVDQ-------RKIFT 205
+ K+ E + L YP LQA D + V G DQ R I
Sbjct: 113 TQFKDKSAKKGESIPIGLLTYPVLQAADILLYQATLVPV-----GEDQDQHLELTRDI-- 165
Query: 206 LAEK---------YLPQLGYAKRIHFMNPMVPGLAG-GKMSSSEEDSKIDLLDAPALVKK 255
A + LP+ +K +PGL G GKMS S+ +S I LLD P ++K
Sbjct: 166 -ARRFNHLYGEVFPLPEALISK-----VARLPGLDGPGKMSKSDPNSAIFLLDDPKTIRK 219
Query: 256 KLKKA---------FCEPGNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSD 306
K+KKA + + G E + S ++++ E GG L +
Sbjct: 220 KIKKAATDGPTLIEYRKGGKPEVCNLFEIY-----SAFFEDDSILEIEAEYRGGELGCGE 274
Query: 307 YQSLEQVFAKQELHPADLKAAAEFYINRLLEPIRKKFE 344
K+EL A+ I L+PI+++ E
Sbjct: 275 --------CKKEL--AEA-------IQEFLKPIQERRE 295
>gnl|CDD|173903 cd00806, TrpRS_core, catalytic core domain of tryptophanyl-tRNA
synthetase. Tryptophanyl-tRNA synthetase (TrpRS)
catalytic core domain. TrpRS is a homodimer which
attaches Tyr to the appropriate tRNA. TrpRS is a class I
tRNA synthetases, so it aminoacylates the 2'-OH of the
nucleotide at the 3' end of the tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains class I characteristic
HIGH and KMSKS motifs, which are involved in ATP
binding.
Length = 280
Score = 56.4 bits (137), Expect = 1e-08
Identities = 67/295 (22%), Positives = 102/295 (34%), Gaps = 64/295 (21%)
Query: 50 IYWGTATTGRPHIA-YFVPMSKIADFLRAGCEVTILFADLHAYLDNMKAPWELLALRTKY 108
+ G +G H+ Y AG E+ ADLHA P EL +
Sbjct: 2 VLSGIQPSGSLHLGHYLGAFRFWVWLQEAGYELFFFIADLHALTVKQLDPEEL----RQN 57
Query: 109 YEESIKAMLES-IDVPISKLKFVKGTDYQLSKEYTLDVYRLSSVITEHDAKKA---GAEV 164
E+ K L +D P F + + + + LS V+T + ++ +
Sbjct: 58 TRENAKDYLACGLD-PEKSTIFFQSDVPEHYE----LAWLLSCVVTFGELERMTGFKDKS 112
Query: 165 VKQVEHPLLSGLL-YPGLQALD-----EEYLKVDAQFGGVDQ-------RKIFTLAEK-- 209
+ + GLL YP LQA D + V G+DQ R I A +
Sbjct: 113 AQGESVNI--GLLTYPVLQAADILLYKACLVPV-----GIDQDPHLELTRDI---ARRFN 162
Query: 210 -------YLPQLGYAKRIHFMNPMVPGLAGG--KMSSSEEDSKIDLLDAPALVKKKLKKA 260
P + +PGL G KMS S+ ++ I L D+P +KKK+ KA
Sbjct: 163 KLYGEIFPKPAA-----LLSKGAFLPGLQGPSKKMSKSDPNNAIFLTDSPKEIKKKIMKA 217
Query: 261 FCEPGNVE--------DNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDY 307
+ G E L + F + + DE G L + +
Sbjct: 218 ATDGGRTEHRRDGGGPGVSNLVEIYSAFF---NDDDEELEEIDEYRSGGLGYGEC 269
>gnl|CDD|131277 TIGR02222, chap_CsaA, export-related chaperone protein CsaA. This
model describes Bacillus subtilis CsaA, an
export-related chaperone that interacts with the Sec
system, and related proteins from a number of other
bacteria and archaea. The crystal structure is known for
the homodimer from Thermus thermophilus [Protein fate,
Protein folding and stabilization, Protein fate, Protein
and peptide secretion and trafficking].
Length = 107
Score = 50.9 bits (122), Expect = 4e-08
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 372 RLDIRVGKIVEVSRHPDA-EALYVEKIDLGEE-NPRTIVSGLVNYVKEGDMANRLVVVLC 429
+LD+RVG+IV P+A + Y +D G E + + + K D+ RLVV +
Sbjct: 6 KLDLRVGRIVRAEPFPEARKPAYKLWVDFGTEIGVKQSSAQITKLYKPEDLIGRLVVAVV 65
Query: 430 NLKPAKMRGIESAGMVLCASVEEE 453
N P ++ G S +VL E+
Sbjct: 66 NFPPKQIAGFLSEVLVLGVIDEQG 89
>gnl|CDD|234866 PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed.
Length = 333
Score = 46.2 bits (111), Expect = 3e-05
Identities = 51/206 (24%), Positives = 77/206 (37%), Gaps = 70/206 (33%)
Query: 175 GLL-YPGLQALDEEYLKVDAQFG--GVDQR------------------KIFTLAEKYLPQ 213
GL YP L A D L A G DQ+ ++F + E +P+
Sbjct: 122 GLFTYPVLMAAD--ILLYKADLVPVGEDQKQHLELTRDIARRFNNLYGEVFPVPEPLIPK 179
Query: 214 LGYAKRIHFMNPMVPGLAGG--KMSSSEEDSK--IDLLDAPALVKKKLKKA--------- 260
+G V GL G KMS S+ + I+LLD P + KK+KKA
Sbjct: 180 VG---------ARVMGLDGPTKKMSKSDPNDNNTINLLDDPKTIAKKIKKAVTDSERLRE 230
Query: 261 --FCEPGNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAKQE 318
+ P E + +L+ S GE++ E G + D K++
Sbjct: 231 IRYDLPNKPEVSNLLTIYS--ALS----GESIEELEAEYEAGGKGYGD--------FKKD 276
Query: 319 LHPADLKAAAEFYINRLLEPIRKKFE 344
L A+ + L PIR+++E
Sbjct: 277 L--AEA-------VVEFLAPIRERYE 293
>gnl|CDD|225315 COG2517, COG2517, Predicted RNA-binding protein containing a
C-terminal EMAP domain [General function prediction
only].
Length = 219
Score = 39.1 bits (91), Expect = 0.003
Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 7/74 (9%)
Query: 373 LDIRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMANRLVVVLCNLK 432
+DI VG+++ V +HP+A+ L V +++G T+V+ ++ V+EGD R+ V L L
Sbjct: 120 VDIVVGEVMSVGKHPNADKLLVTVVNIGGRA-VTVVTNDLD-VREGD---RVAVAL--LP 172
Query: 433 PAKMRGIESAGMVL 446
P G+ S GM L
Sbjct: 173 PRNFFGVVSEGMFL 186
>gnl|CDD|178104 PLN02486, PLN02486, aminoacyl-tRNA ligase.
Length = 383
Score = 39.7 bits (93), Expect = 0.003
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 198 VDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAG--GKMSSSEEDSKIDLLDAPALVKK 255
+DQ F + P+LGY K + P L G GKMS+S+ +S I + D P +K
Sbjct: 227 IDQDPYFRMTRDVAPRLGYYKPALIESRFFPALQGESGKMSASDPNSAIYVTDTPKEIKN 286
Query: 256 KLKK-AF 261
K+ K AF
Sbjct: 287 KINKYAF 293
>gnl|CDD|183400 PRK12282, PRK12282, tryptophanyl-tRNA synthetase II; Reviewed.
Length = 333
Score = 34.4 bits (80), Expect = 0.11
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 10/59 (16%)
Query: 228 PGLAG-GKMSSSEEDSKIDLLDAPALVKKKLKKAFC--------EPGNVEDNGVLSFLK 277
PGL G KMS S ++ I L D +KKK+ + +PG VE N V ++L
Sbjct: 189 PGLDGKAKMSKSLGNA-IYLSDDADTIKKKVMSMYTDPNHIRVEDPGKVEGNVVFTYLD 246
>gnl|CDD|215478 PLN02886, PLN02886, aminoacyl-tRNA ligase.
Length = 389
Score = 33.6 bits (77), Expect = 0.22
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 16/79 (20%)
Query: 190 KVDAQFGGVDQRK-------IFTLAEKYLPQLGYAKRIHFMNPMVPGLAGGKMSSSE--E 240
+V+ +GG +K +F + E +P G R+ M+ + G + KMS S +
Sbjct: 207 RVNNLYGGRKWKKLGGRGGSVFKVPEALIPPAG--ARV--MS-LTDGTS--KMSKSAPSD 259
Query: 241 DSKIDLLDAPALVKKKLKK 259
S+I+LLD P ++ K+K+
Sbjct: 260 QSRINLLDPPDVIANKIKR 278
>gnl|CDD|201253 pfam00480, ROK, ROK family.
Length = 181
Score = 31.1 bits (71), Expect = 0.99
Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 373 LDIRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKE--GDMANRLVVVLC 429
+D+ KI D E L E+I E P + LV+ V+E L + +
Sbjct: 2 IDLGGTKIELALNDEDGEILDRERIPTPETTPEETLDALVDLVEEAITQFGASLGIGIG 60
>gnl|CDD|183401 PRK12283, PRK12283, tryptophanyl-tRNA synthetase; Reviewed.
Length = 398
Score = 31.1 bits (71), Expect = 1.4
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 227 VPGLAGGKMSSSEEDSKIDLLDAPALVKKKLK 258
+PGL G KMS S ++ I L + P V KK++
Sbjct: 257 MPGLDGQKMSKSYGNT-IGLREDPESVTKKIR 287
>gnl|CDD|237360 PRK13354, PRK13354, tyrosyl-tRNA synthetase; Provisional.
Length = 410
Score = 30.3 bits (69), Expect = 2.6
Identities = 21/72 (29%), Positives = 25/72 (34%), Gaps = 16/72 (22%)
Query: 178 YPGLQALD----EEYLKVDAQFGGVDQRKIF------TLAEKYLPQLGYAKRIHFMNPMV 227
YP LQA D VD Q GG DQ L K ++ P++
Sbjct: 170 YPLLQAYDFVHLNRKEDVDLQIGGTDQW--GNILMGRDLQRKL----EGEEQFGLTMPLL 223
Query: 228 PGLAGGKMSSSE 239
G G KM S
Sbjct: 224 EGADGTKMGKSA 235
>gnl|CDD|235645 PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated.
Length = 408
Score = 30.5 bits (70), Expect = 2.7
Identities = 23/73 (31%), Positives = 28/73 (38%), Gaps = 16/73 (21%)
Query: 177 LYPGLQALDEEYL----KVDAQFGGVDQRKIF------TLAEKYLPQLGYAKRIHFMNPM 226
LYP LQ D L D Q GG DQ L +Y + + P+
Sbjct: 171 LYPLLQGYDFVALNKRYGCDLQLGGSDQW--GNILSGRDLQRRYGGKPQFG----LTMPL 224
Query: 227 VPGLAGGKMSSSE 239
+ GL G KM SE
Sbjct: 225 LTGLDGKKMGKSE 237
>gnl|CDD|224012 COG1087, GalE, UDP-glucose 4-epimerase [Cell envelope biogenesis,
outer membrane].
Length = 329
Score = 29.4 bits (67), Expect = 4.4
Identities = 31/132 (23%), Positives = 48/132 (36%), Gaps = 47/132 (35%)
Query: 278 HVVFSLLKPGENLVITRDENNG--------------GNLNFSDYQSLEQVFAKQE----L 319
H V LLK G +V+ + +NG G+L D L VF + + +
Sbjct: 15 HTVRQLLKTGHEVVVLDNLSNGHKIALLKLQFKFYEGDLL--DRALLTAVFEENKIDAVV 72
Query: 320 HPADLKAAAE-------FYIN------RLLEPIRKK------FESKELKDLTSKAY--PP 358
H A + E +Y N L+E + + F S T+ Y P
Sbjct: 73 HFAASISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKFIFSS------TAAVYGEPT 126
Query: 359 KKPVVESDIIAP 370
P+ E+ +AP
Sbjct: 127 TSPISETSPLAP 138
>gnl|CDD|173415 PTZ00124, PTZ00124, adenosine deaminase; Provisional.
Length = 362
Score = 29.4 bits (66), Expect = 4.5
Identities = 15/66 (22%), Positives = 26/66 (39%)
Query: 130 VKGTDYQLSKEYTLDVYRLSSVITEHDAKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYL 189
V +++ S + + L + K E V+ ++H + GLL G D +
Sbjct: 120 VVLMEFRYSPTFVAFKHNLDIDLIHQAIVKGIKEAVELLDHKIEVGLLCIGDTGHDAAPI 179
Query: 190 KVDAQF 195
K A F
Sbjct: 180 KESADF 185
>gnl|CDD|225105 COG2194, COG2194, Predicted membrane-associated, metal-dependent
hydrolase [General function prediction only].
Length = 555
Score = 28.9 bits (65), Expect = 7.7
Identities = 29/117 (24%), Positives = 47/117 (40%), Gaps = 20/117 (17%)
Query: 11 NMTSPSL----SFDEKKQLITRNLQEFLGEDRLNVILKERDLKIYWGTATTGRPHIAYFV 66
T+ SL S D ++ + Q+ L +D L +LK K +W + TG + +
Sbjct: 278 TATALSLPCMFSRDPRENY---SEQKALHQDNLLDLLKRAGYKTFWISNQTGCKGVTDRI 334
Query: 67 PMSKIAD---FLRAGCEVT-----ILFADLHAYLDNMKAPWELLALRTK-----YYE 110
P++ AD FL+ C L DL L + +L+ L YY+
Sbjct: 335 PIANRADENYFLKGYCNGGNCYDEALLPDLDQVLAQELSQKKLIVLHLMGSHPNYYD 391
>gnl|CDD|100097 cd05805, MPG1_transferase, GTP-mannose-1-phosphate
guanyltransferase (MPG1 transferase), also known as
GDP-mannose pyrophosphorylase, is a bifunctional enzyme
with both phosphomannose isomerase (PMI) activity and
GDP-mannose phosphorylase (GMP) activity. The protein
contains an N-terminal NTP transferase domain, an
L-beta-H domain, and a C-terminal PGM-like domain that
belongs to the alpha-D-phosphohexomutase superfamily.
This subfamily is limited to bacteria and archaea. The
alpha-D-phosphohexomutases include several related
enzymes that catalyze a reversible intramolecular
phosphoryl transfer on their sugar substrates. Members
of this group appear to lack conserved residues
necessary for metal binding and catalytic activity.
Other members of this superfamily include the
phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine
mutase (PNGM), phosphoacetylglucosamine mutase (PAGM),
the bacterial phosphomannomutase ManB, the bacterial
phosphoglucosamine mutase GlmM, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
these enzymes has four domains with a centrally located
active site formed by four loops, one from each domain.
All four domains are included in this alignment model.
Length = 441
Score = 28.8 bits (65), Expect = 7.8
Identities = 20/96 (20%), Positives = 37/96 (38%), Gaps = 11/96 (11%)
Query: 278 HVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAKQEL---HPADLKA------AA 328
HV S P + + D G N++ + + +E F +++ H ++
Sbjct: 90 HVRTSPDDPDKVEIEFFDSR-GLNISRAMERKIENAFFREDFRRAHVDEIGDITEPPDFV 148
Query: 329 EFYINRLLEPIRKK-FESKELKDLTSKAYPPKKPVV 363
E+YI LL + + LK + AY V+
Sbjct: 149 EYYIRGLLRALDTSGLKKSGLKVVIDYAYGVAGIVL 184
>gnl|CDD|216056 pfam00675, Peptidase_M16, Insulinase (Peptidase family M16).
Length = 149
Score = 27.7 bits (62), Expect = 8.8
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 10/87 (11%)
Query: 266 NVEDNGVLSFLKHVVF--SLLKPGENLVITRDENNGGNLN-FSDYQSLEQVFAKQELHPA 322
++NG+ FL+H+ F + P E+L E GG+LN ++ + V+ E+
Sbjct: 27 PDDNNGLAHFLEHMAFKGTKKYPSEDLEEEL-EKLGGSLNAYTSRE--HTVY-YVEVLND 82
Query: 323 DLKAAAEFYINRLLEPIRKKFESKELK 349
DL A + + L P F E++
Sbjct: 83 DLPKAVDRLADFFLNP---LFSPSEVE 106
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.135 0.386
Gapped
Lambda K H
0.267 0.0751 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 28,527,267
Number of extensions: 2889337
Number of successful extensions: 2544
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2488
Number of HSP's successfully gapped: 62
Length of query: 549
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 447
Effective length of database: 6,413,494
Effective search space: 2866831818
Effective search space used: 2866831818
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (27.2 bits)