RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5948
(549 letters)
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique
anticodon recognit domain, dimer, ligase; 1.18A {Homo
sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Length = 372
Score = 445 bits (1146), Expect = e-154
Identities = 259/375 (69%), Positives = 294/375 (78%), Gaps = 5/375 (1%)
Query: 14 SPSLSFDEKKQLITRNLQEFLGEDRLNVILKERDLKIYWGTATTGRPHIAYFVPMSKIAD 73
+ S +EK LITRNLQE LGE++L ILKER+LKIYWGTATTG+PH+AYFVPMSKIAD
Sbjct: 2 GDAPSPEEKLHLITRNLQEVLGEEKLKEILKERELKIYWGTATTGKPHVAYFVPMSKIAD 61
Query: 74 FLRAGCEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPISKLKFVKGT 133
FL+AGCEVTILFADLHAYLDNMKAPWELL LR YYE IKAMLESI VP+ KLKF+KGT
Sbjct: 62 FLKAGCEVTILFADLHAYLDNMKAPWELLELRVSYYENVIKAMLESIGVPLEKLKFIKGT 121
Query: 134 DYQLSKEYTLDVYRLSSVITEHDAKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDA 193
DYQLSKEYTLDVYRLSSV+T+HD+KKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDA
Sbjct: 122 DYQLSKEYTLDVYRLSSVVTQHDSKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDA 181
Query: 194 QFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAGGKMSSSEEDSKIDLLDAPALV 253
QFGG+DQRKIFT AEKYLP LGY+KR+H MNPMVPGL G KMSSSEE+SKIDLLD V
Sbjct: 182 QFGGIDQRKIFTFAEKYLPALGYSKRVHLMNPMVPGLTGSKMSSSEEESKIDLLDRKEDV 241
Query: 254 KKKLKKAFCEPGNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQV 313
KKKLKKAFCEPGNVE+NGVLSF+KHV+F L VI RDE GGN ++ Y LE+
Sbjct: 242 KKKLKKAFCEPGNVENNGVLSFIKHVLFPLKSE---FVILRDEKWGGNKTYTAYVDLEKD 298
Query: 314 FAKQELHPADLKAAAEFYINRLLEPIRKKFESKELKDLTSKAYPPKKPVVESDIIAPHRL 373
FA + +HP DLK + E +N+LL+PIR+KF + LK L S AYP
Sbjct: 299 FAAEVVHPGDLKNSVEVALNKLLDPIREKFNTPALKKLASAAYPDPSKQKPMAK--GPAK 356
Query: 374 DIRVGKIVEVSRHPD 388
+ +++ H
Sbjct: 357 NSEPEEVILEHHHHH 371
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex;
HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A
{Saccharomyces cerevisiae}
Length = 394
Score = 431 bits (1111), Expect = e-149
Identities = 202/394 (51%), Positives = 273/394 (69%), Gaps = 13/394 (3%)
Query: 12 MTSPS-LSFDEKKQLITRNLQEFLGEDRLNVILK--ERDLKIYWGTATTGRPHIAYFVPM 68
M+S + + +E LIT+NLQE L + +L+ +R LK+YWGTA TGRPH YFVPM
Sbjct: 1 MSSAATVDPNEAFGLITKNLQEVLNPQIIKDVLEVQKRHLKLYWGTAPTGRPHCGYFVPM 60
Query: 69 SKIADFLRAGCEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPISKLK 128
+K+ADFL+AGCEVT+L ADLHA+LDNMKAP E++ R KYYE +IKA+L SI+VPI KLK
Sbjct: 61 TKLADFLKAGCEVTVLLADLHAFLDNMKAPLEVVNYRAKYYELTIKAILRSINVPIEKLK 120
Query: 129 FVKGTDYQLSKEYTLDVYRLSSVITEHDAKKAGAEVVKQVEHPLLSGLLYPGLQALDEEY 188
FV G+ YQL+ +YT+D++RLS++++++DAK+AGA+VVKQV +PLLSGL+YP +QALDE++
Sbjct: 121 FVVGSSYQLTPDYTMDIFRLSNIVSQNDAKRAGADVVKQVANPLLSGLIYPLMQALDEQF 180
Query: 189 LKVDAQFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAGG-KMSSSEEDSKIDLL 247
L VD QFGGVDQRKIF LAE+ LP LGY KR H MNPMVPGLA G KMS+S+ +SKIDLL
Sbjct: 181 LDVDCQFGGVDQRKIFVLAEENLPSLGYKKRAHLMNPMVPGLAQGGKMSASDPNSKIDLL 240
Query: 248 DAPALVKKKLKKAFCEPGNVEDNGVLSFLKHVVFSLL-----KPGENLVITRDENNGGNL 302
+ P VKKK+ AFC PGNVE+NG+LSF+++V+ + I R E GG +
Sbjct: 241 EEPKQVKKKINSAFCSPGNVEENGLLSFVQYVIAPIQELKFGTNHFEFFIDRPEKFGGPI 300
Query: 303 NFSDYQSLEQVFAKQELHPADLKAAAEFYINRLLEPIRKKFES-KELKDLTSKAYPPKKP 361
+ ++ ++ F +++L P DLK IN LLEPIR++F + KE ++ + K YP P
Sbjct: 301 TYKSFEEMKLAFKEEKLSPPDLKIGVADAINELLEPIRQEFANNKEFQEASEKGYPVATP 360
Query: 362 VVESDIIAPHRLDIRV---GKIVEVSRHPDAEAL 392
P + K E++ + L
Sbjct: 361 QKSKKAKKPKNKGTKYPGATKTNEIATKLEETKL 394
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: TYR; 1.80A {Archaeoglobus
fulgidus}
Length = 323
Score = 405 bits (1044), Expect = e-139
Identities = 119/330 (36%), Positives = 195/330 (59%), Gaps = 10/330 (3%)
Query: 17 LSFDEKKQLITRNLQEFLGEDRLNVILKE-RDLKIYWGTATTGRPHIAYFVPMSKIADFL 75
+ EK +LITRN +E + E+ L +++ + Y G +G H+ + + + K+ D
Sbjct: 1 MDITEKLRLITRNAEEVVTEEELRQLIETKEKPRAYVGYEPSGEIHLGHMMTVQKLMDLQ 60
Query: 76 RAGCEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPISKLKFVKGTDY 135
AG E+ +L AD+HAYL N K +E +A Y ++ A + + S+ KFV G++Y
Sbjct: 61 EAGFEIIVLLADIHAYL-NEKGTFEEIAEVADYNKKVFIA----LGLDESRAKFVLGSEY 115
Query: 136 QLSKEYTLDVYRLSSVITEHDAKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQF 195
QLS++Y LDV +++ + T + A+++ EV ++ E P++S ++YP +QALD +L VD
Sbjct: 116 QLSRDYVLDVLKMARITTLNRARRSMDEVSRRKEDPMVSQMIYPLMQALDIAHLGVDLAV 175
Query: 196 GGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAGGKMSSSEEDSKIDLLDAPALVKK 255
GG+DQRKI LA + LP+LGY+ + P++ GL G KMSSS + + I + D P V++
Sbjct: 176 GGIDQRKIHMLARENLPRLGYSSPVCLHTPILVGLDGQKMSSS-KGNYISVRDPPEEVER 234
Query: 256 KLKKAFCEPGNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFA 315
K++KA+C G VE+N +L K+ + +V+ RD GG++ ++ ++ L + F
Sbjct: 235 KIRKAYCPAGVVEENPILDIAKYHILPRFGK---IVVERDAKFGGDVEYASFEELAEDFK 291
Query: 316 KQELHPADLKAAAEFYINRLLEPIRKKFES 345
+LHP DLK A Y+N LLE RK+
Sbjct: 292 SGQLHPLDLKIAVAKYLNMLLEDARKRLGV 321
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural
genomics, NPPSFA, national on protein structural and
functional analyses; 2.20A {Aeropyrum pernix}
Length = 364
Score = 388 bits (999), Expect = e-132
Identities = 93/361 (25%), Positives = 170/361 (47%), Gaps = 28/361 (7%)
Query: 16 SLSFDEKKQLITRNLQEFLGEDRLNVILKE-RDLKIYWGTATTGRPHIAYFVPMSKIADF 74
+ +E+ I RN E + E+ L +L +K Y G +G HI + V M K+ D
Sbjct: 3 RVDVEERFNRIARNTVEIVTEEELKGLLASGARIKGYIGYEPSGVAHIGWLVWMYKVKDL 62
Query: 75 LRAGCEVTILFADLHAYL-DNMKAPWELLALRTKYYEESIKAMLESIDVPISKLKFVKGT 133
+ AG + ++L A HAY+ D + +L+ + ++E+ VP+ +++FV
Sbjct: 63 VEAGVDFSVLEATWHAYINDKLGGDMDLIRAAARIVRR----VMEAAGVPVERVRFVDAE 118
Query: 134 DYQLSKEYTLDVYRLSSVITEHDAKKAGAEVVKQVEHPLL--SGLLYPGLQALDEEYLKV 191
+ K+Y V R++ + ++A + ++ E + S L+YP +Q D Y+ +
Sbjct: 119 ELASDKDYWGLVIRVAKRASLARVRRALTIMGRRAEEAEVDASKLIYPLMQVSDIFYMDL 178
Query: 192 DAQFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAGG-----------------K 234
D GG+DQRK LA +LG K + P++ L G K
Sbjct: 179 DIALGGMDQRKAHMLARDVAEKLGRKKPVAIHTPIISSLQGPGRMEASQGEIDDVLAEVK 238
Query: 235 MSSSEEDSKIDLLDAPALVKKKLKKAFCEPGNVEDNGVLSFLKHVVFSLLKPGENLVITR 294
MS S+ ++ + ++D+ +++K++KA+C V+ N VL ++++F+ + G L + R
Sbjct: 239 MSKSKPETAVFVVDSDDDIRRKIRKAYCPAKQVQGNPVLEIARYILFA--RDGFTLRVDR 296
Query: 295 DENNGGNLNFSDYQSLEQVFAKQELHPADLKAAAEFYINRLLEPIRKKFES-KELKDLTS 353
GG + ++ Y+ LE+ + LHP DLK A + ++ PIR +K
Sbjct: 297 PAKYGGPVEYTSYEELERDYTDGRLHPLDLKNAVAESLIEVVRPIRGAVLGDPAMKRALE 356
Query: 354 K 354
Sbjct: 357 A 357
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus
jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A*
1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A
3n2y_A* 2hgz_A*
Length = 314
Score = 384 bits (988), Expect = e-131
Identities = 109/327 (33%), Positives = 180/327 (55%), Gaps = 18/327 (5%)
Query: 21 EKKQLITRNLQEFLGEDRLNVILKERDLKIYWGTATTGRPHIAYFVPMSKIADFLRAGCE 80
++ ++I RN E + E+ L +LK+ + Y G +G+ H+ +++ + K+ D AG +
Sbjct: 2 DEFEMIKRNTSEIISEEELREVLKKDEKSAYIGFEPSGKIHLGHYLQIKKMIDLQNAGFD 61
Query: 81 VTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPISKLKFVKGTDYQLSKE 140
+ IL ADL AYL N K + + Y ++ +AM K K+V G+++QL K+
Sbjct: 62 IIILLADLAAYL-NQKGELDEIRKIGDYNKKVFEAMGL-------KAKYVYGSEFQLDKD 113
Query: 141 YTLDVYRLSSVITEHDAKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQFGGVDQ 200
YTL+VYRL+ T A+++ + ++ E+P ++ ++YP +Q YL VD GG++Q
Sbjct: 114 YTLNVYRLALKTTLKRARRSMELIAREDENPKVAEVIYPIMQVNTSHYLGVDVAVGGMEQ 173
Query: 201 RKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAGGKMSSSEEDSKIDLLDAPALVKKKLKKA 260
RKI LA + LP+ K + NP++ GL G SS + + I + D+P ++ K+KKA
Sbjct: 174 RKIHMLARELLPK----KVVCIHNPVLTGLDGEGKMSSSKGNFIAVDDSPEEIRAKIKKA 229
Query: 261 FCEPGNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAKQELH 320
+C G VE N ++ K+ + L I R E GG+L + Y+ LE +F +ELH
Sbjct: 230 YCPAGVVEGNPIMEIAKYFLE------YPLTIKRPEKFGGDLTVNSYEELESLFKNKELH 283
Query: 321 PADLKAAAEFYINRLLEPIRKKFESKE 347
P LK A + ++LEPIRK+
Sbjct: 284 PMYLKNAVAEELIKILEPIRKRLLEHH 310
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation,
structural genomics; HET: TYR; 2.20A {Pyrococcus
horikoshii}
Length = 375
Score = 351 bits (903), Expect = e-117
Identities = 90/369 (24%), Positives = 172/369 (46%), Gaps = 36/369 (9%)
Query: 17 LSFDEKKQLITR-NLQEFLGEDRLNVILKE-RDLKIYWGTATTGRPHIA-YFVPMSKIAD 73
+ +E+ L+ + +E L + L + + L+ Y G +G H+ + +KIAD
Sbjct: 1 MDIEERINLVLKKPTEEVLTVENLRHLFEIGAPLQHYIGFEISGYIHLGTGLMAGAKIAD 60
Query: 74 FLRAGCEVTILFADLHAYLDN-MKAPWELLALRTKY-YEESIKAMLESIDVPISKLKFVK 131
F +AG + + AD H+++++ + E++ ++ ++ +E + K++FV
Sbjct: 61 FQKAGIKTRVFLADWHSWINDKLGGDLEVIQEVALKYFKVGMEKSIEVMGGDPKKVEFVL 120
Query: 132 GTDYQLSKEYTLDVYRLSSVITEHDAKKAGAEVVKQVEHPL-LSGLLYPGLQALDEEYLK 190
++ +Y V +S +T ++ + +Q+ + + L+YP +Q D Y
Sbjct: 121 ASEILEKGDYWQTVIDISKNVTLSRVMRSITIMGRQMGEAIDFAKLIYPMMQVADIFYQG 180
Query: 191 VDAQFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVP---------------------- 228
V G+DQRK +A + +L Y +H + P
Sbjct: 181 VTIAHAGMDQRKAHVIAIEVAQKLRYHPIVHEGEKLKPVAVHHHLLLGLQEPPKWPIESE 240
Query: 229 -----GLAGGKMSSSEEDSKIDLLDAPALVKKKLKKAFCEPGNVEDNGVLSFLKHVVFSL 283
A KMS S+ S + + D+P +++KL+KAFC V N VL ++++++F
Sbjct: 241 EEFKEIKAQMKMSKSKPYSAVFIHDSPEEIRQKLRKAFCPAREVRYNPVLDWVEYIIFR- 299
Query: 284 LKPGENLVITRDENNGGNLNFSDYQSLEQVFAKQELHPADLKAAAEFYINRLLEPIRKKF 343
+ + R GG++ ++ ++ L++ FA+ +LHP DLK A Y+ LLEPIR+ F
Sbjct: 300 -EEPTEFTVHRPAKFGGDVTYTTFEELKRDFAEGKLHPLDLKNAVAEYLINLLEPIRRYF 358
Query: 344 ES-KELKDL 351
E E +L
Sbjct: 359 EKHPEPLEL 367
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A
{Plasmodium falciparum}
Length = 373
Score = 343 bits (882), Expect = e-114
Identities = 104/364 (28%), Positives = 169/364 (46%), Gaps = 17/364 (4%)
Query: 1 MTLESQMNSLNMTSPSLSFDEKKQLITRNLQEFLGEDRLNVILKE-RDLKIYWGTATTGR 59
E + S D+ I E + D L V L R L Y G +GR
Sbjct: 9 EEQEIEEKKAQEESKIEDVDKILNDILSISSECIQPDELRVKLLLKRKLICYDGFEPSGR 68
Query: 60 PHIAYFVPMSKIADFL-RAGCEVTILFADLHAYLDN-MKAPWELLALRTKYYEESIKAML 117
HIA + S I + L GC AD A+L+N M + + Y+ +
Sbjct: 69 MHIAQGLLKSIIVNKLTSNGCTFIFWIADWFAHLNNKMSGDLKKIKKVGSYF----IEVW 124
Query: 118 ESIDVPISKLKFVKGTDY--QLSKEYTLDVYRLSSVITEHDAKKAGAEVVK-QVEHPLLS 174
+S + + ++F+ ++ + EY V +S + K+ + + + E S
Sbjct: 125 KSCGMNMENVQFLWASEEINKKPNEYWSLVLDISRSFNINRMKRCLKIMGRSEGEENYCS 184
Query: 175 GLLYPGLQALDEEYLKVDAQFGGVDQRKIFTLAEKYLPQLGYAKR-IHFMNPMVPGLAGG 233
+LYP +Q D +L VD G+DQRK+ LA +Y K+ + + M+PGL G
Sbjct: 185 QILYPCMQCADIFFLNVDICQLGIDQRKVNMLAREYCDIKKIKKKPVILSHGMLPGLLEG 244
Query: 234 --KMSSSEEDSKIDLLDAPALVKKKLKKAFCEPGNVEDNGVLSFLKHVVFSLLKPGENLV 291
KMS S+E+S I + D+ + V +K+KKA+C P +E+N + ++ K ++F
Sbjct: 245 QEKMSKSDENSAIFMDDSESDVNRKIKKAYCPPNVIENNPIYAYAKSIIFPSY---NEFN 301
Query: 292 ITRDENNGGNLNFSDYQSLEQVFAKQELHPADLKAAAEFYINRLLEPIRKKFES-KELKD 350
+ R E NGG+ + Q LE + +HP DLK YIN+LL+P+R F++ E K+
Sbjct: 302 LVRKEKNGGDKTYYTLQELEHDYVNGFIHPLDLKDNVAMYINKLLQPVRDHFQNNIEAKN 361
Query: 351 LTSK 354
L ++
Sbjct: 362 LLNE 365
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase,
AARS, tyrrs, pseudod translation, ATP-binding,
nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania
major} PDB: 3p0i_A* 3p0h_A*
Length = 690
Score = 349 bits (897), Expect = e-112
Identities = 87/351 (24%), Positives = 151/351 (43%), Gaps = 18/351 (5%)
Query: 11 NMTSPSLSFDEKKQLITRNLQEFLGEDRLNVILKERD-LKIYWGTATTGRPHIAYFV-PM 68
+ ++ DE+ +L+ +E + E L +++++ ++ Y G +GR HIA +
Sbjct: 3 HHHHHHMNTDERYKLLRSVGEECIQESELRNLIEKKPLIRCYDGFEPSGRMHIAQGIFKA 62
Query: 69 SKIADFLRAGCEVTILFADLHAYL-DNMKAPWELLALRTKYYEESIKAMLESIDVPISKL 127
+ AGCE AD A + D + E + + +Y + ++ + + K+
Sbjct: 63 VNVNKCTAAGCEFVFWVADWFALMNDKVGGELEKIRIVGRYL----IEVWKAAGMDMDKV 118
Query: 128 KFVKGTDYQLSK--EYTLDVYRLSSVITEHDAKKAGAEVVKQVEHPLLSGLLYPGLQALD 185
F+ ++ S Y V + T KK + K + +LYP +Q D
Sbjct: 119 LFLWSSEEITSHADTYWRMVLDIGRQNTIARIKKCCTIMGKTEGTLTAAQVLYPLMQCCD 178
Query: 186 EEYLKVDAQFGGVDQRKIFTLAEKYLPQLGYA-KRIHFMNPMVPGLAGG--KMSSSEEDS 242
+LK D G+DQRK+ LA +Y +G K + + M+ GL G KMS S+ DS
Sbjct: 179 IFFLKADICQLGLDQRKVNMLAREYCDLIGRKLKPVILSHHMLAGLKQGQAKMSKSDPDS 238
Query: 243 KIDLLDAPALVKKKLKKAFCEPGNVEDNGVLSFLKHVVFSLLKPG----ENLVITRDE-- 296
I + D V +K+++A+C + + V P + +V R
Sbjct: 239 AIFMEDTEEDVARKIRQAYCPRVKQSASAITDDGAPVATDDRNPVLDYFQCVVYARPGAA 298
Query: 297 NNGGNLNFSDYQSLEQVFAKQELHPADLKAAAEFYINRLLEPIRKKFESKE 347
++ Y+ LEQ F E+ LK+ +N LLEP+R+ F S E
Sbjct: 299 ATIDGTTYATYEDLEQAFVSDEVSEDALKSCLIDEVNALLEPVRQHFASNE 349
Score = 295 bits (756), Expect = 7e-92
Identities = 63/351 (17%), Positives = 119/351 (33%), Gaps = 26/351 (7%)
Query: 19 FDEKKQLITRNLQEFLGEDRLNVILKERDLKIYWGTATTGRPHIA-YFVPMSKIADFLRA 77
+ K L E L + ++ +A + ++K
Sbjct: 355 LEAVKSYRKDGATLPLAETALPAAPAKPHACMWMPALLKVPLDVAEGMIKVTKDFIAAHP 414
Query: 78 GCEVTILFADLHAYL-DNMKAPWELLALRTKYYEESIKAMLESIDVPISKLKFVKGTDYQ 136
VT++ D A D + + ++ + +KA + S +K V +
Sbjct: 415 EGTVTLVLPDWSAVASDEITGVEKDISAALQVNCALLKAYG--LP---SSVKIVTENEVI 469
Query: 137 L--SKEYTLDVYRLSSVITEHDAKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQ 194
L ++ + V ++ ++ V+ ++ ++ L V
Sbjct: 470 LGNCDDFWVSVIGIARKNLLSHVEELYGGEVRNA-----GQVIAALMRVATALMLSVSHV 524
Query: 195 FGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLA--GGKMSSSEEDSKIDLLDAPAL 252
I A +Y + + + +P L G + D + L D
Sbjct: 525 ISTSLDGHINAFAREYTKERI--DCVQTLEGRIPALHRPGAAPAVLGADDVLYLDDNDMD 582
Query: 253 VKKKLKKAFCEPGNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQ 312
+++K+KKA+ P N E N V+S +H++ L I R E NGGN++++ ++L
Sbjct: 583 IRRKIKKAYSAP-NEEANPVISVAQHLLA----QHGALSIERGEANGGNVSYNTPEALVA 637
Query: 313 VFAKQELHPADLKAAAEFYINRLLEPIRKKFES---KELKDLTSKAYPPKK 360
LHPADLKAA + R K + L + K
Sbjct: 638 DCGSGALHPADLKAAVLQLLLDRSAQARALLNGELKKNMTVLRNAEKKMAK 688
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding;
HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Length = 348
Score = 337 bits (867), Expect = e-112
Identities = 78/359 (21%), Positives = 153/359 (42%), Gaps = 27/359 (7%)
Query: 13 TSPSLSFDEKKQLITRNLQEFLGEDRLNVILKE-RDLKIYWGTATTGRPHIA-YFVPMSK 70
+ + + + + +E DRL ++ R Y G +GR HIA + +
Sbjct: 5 NTDHTNNEHRLTQLLSIAEECETLDRLKQLVDSGRIFTAYNGFEPSGRIHIAQALITVMN 64
Query: 71 IADFLRAGCEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPISKLKFV 130
+ + G ++ I AD A + N+K ++ +R + ++ + + +F+
Sbjct: 65 TNNMIECGGQMIIYIADWFAKM-NLKMNGDINKIRELGRY--FIEVFKACGINLDGTRFI 121
Query: 131 KGTDYQLSK-EYTLDVYRLSSVITEHDAKKAGAEVVKQVEHPL-LSGLLYPGLQALDEEY 188
+++ S Y + ++ T K+ + + L S + YP +QA D
Sbjct: 122 WASEFIASNPSYIERMLDIAEFSTISRVKRCCQIMGRNESDCLKASQIFYPCMQAADVFE 181
Query: 189 L---KVDAQFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAGG--KMSSSEEDSK 243
L +D G+DQRK+ LA +Y G I + M+ L+G KMS S+
Sbjct: 182 LVPEGIDICQLGIDQRKVNMLAIEYANDRGLKIPISLSHHMLMSLSGPKKKMSKSDPQGA 241
Query: 244 IDLLDAPALVKKKLKKAFCEPGNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLN 303
I + D V +K+ +A+C DN + ++K+++ G N
Sbjct: 242 IFMDDTEQEVSEKISRAYCTDET-FDNPIFEYIKYLLLR--WFG--------TLNLCGKI 290
Query: 304 FSDYQSLEQVFAKQELHPADLKAAAEFYINRLLEPIRKKFESKELKDLTS--KAYPPKK 360
++D +S+++ F+ ++ +LK YIN +++ +R+ F+ EL +L S K+Y
Sbjct: 291 YTDIESIQEDFS--SMNKRELKTDVANYINTIIDLVREHFKKPELSELLSNVKSYQQPS 347
>1ntg_A Tyrrs, tyrosyl-tRNA synthetase; beta barrel, ligase; 2.21A {Homo
sapiens} SCOP: b.40.4.4
Length = 172
Score = 215 bits (549), Expect = 1e-67
Identities = 92/150 (61%), Positives = 115/150 (76%), Gaps = 1/150 (0%)
Query: 364 ESDIIAPHRLDIRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMANR 423
E + + P RLDIRVGKI+ V +HPDA++LYVEKID+GE PRT+VSGLV +V + ++ +R
Sbjct: 1 EPEEVIPSRLDIRVGKIITVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDR 60
Query: 424 LVVVLCNLKPAKMRGIESAGMVLCASVEEEGNKKVEPLFVPPSSKAGDKIVVEGYETGAP 483
LVVVLCNLKP KMRG+ES GM+LCAS+ E N++VEPL P S G+ + V+GYE G P
Sbjct: 61 LVVVLCNLKPQKMRGVESQGMLLCASI-EGINRQVEPLDPPAGSAPGEHVFVKGYEKGQP 119
Query: 484 DEILNPKKKVWEKLQVDLKTSSEGIAQWQG 513
DE L PKKKV+EKLQ D K S E IAQW+
Sbjct: 120 DEELKPKKKVFEKLQADFKISEECIAQWKQ 149
>1fl0_A Endothelial-monocyte activating polypeptide II; RNA-binding domain,
OB-fold, tRNA synthetase complex, RNA binding protein;
1.50A {Homo sapiens} SCOP: b.40.4.4 PDB: 1e7z_A 1euj_A
Length = 171
Score = 206 bits (526), Expect = 3e-64
Identities = 75/142 (52%), Positives = 103/142 (72%), Gaps = 5/142 (3%)
Query: 372 RLDIRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMANRLVVVLCNL 431
RLD+R+G I+ +HPDA++LYVE++D+GE PRT+VSGLVN+V M NR+V++LCNL
Sbjct: 5 RLDLRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVILLCNL 64
Query: 432 KPAKMRGIESAGMVLCASVEEEGNKKVEPLFVPPSSKAGDKIVVEGYETGAPDEILNPKK 491
KPAKMRG+ S MV+CAS E K+E L P S GD+I + + G PD+ LNPKK
Sbjct: 65 KPAKMRGVLSQAMVMCASSPE----KIEILAPPNGSVPGDRITFDAFP-GEPDKELNPKK 119
Query: 492 KVWEKLQVDLKTSSEGIAQWQG 513
K+WE++Q DL T+ E +A ++G
Sbjct: 120 KIWEQIQPDLHTNDECVATYKG 141
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi
aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia
lamblia atcc 50803}
Length = 451
Score = 196 bits (499), Expect = 5e-57
Identities = 62/411 (15%), Positives = 127/411 (30%), Gaps = 80/411 (19%)
Query: 15 PSLSFDEKKQLITRNLQEFLGEDRLNVILKE----RDLKIYWGTA-TTGRPHIAYFVPMS 69
+++ + ++ R L F L + IY G ++G H+ + +P
Sbjct: 57 ETVTGTKAHPMLRRGL--FYAHRDFEEFLSYYEKGHPIYIYTGRGPSSGALHLGHLLPFI 114
Query: 70 KIADFLRAG-CEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPISKLK 128
A C V I D +L N + + T+ + I A K
Sbjct: 115 FTKYLQDAFKCYVVIQITDDEKFLRNRSLSYAEVDSYTRENIKDIIAC----GFDPDKTF 170
Query: 129 FVKGTDYQLSKEYTLDVYRLSSVIT----------------------------------- 153
+ Y K + ++
Sbjct: 171 IFINSQYLSLKNRYRFSCLVDRMLPISQLRASFGFSNDANVGYAAFPPKQMLPVYSTYFD 230
Query: 154 --------------EHDAKKAGAEVVKQVEHPLLSGLLYPG------LQALDEEYLKVDA 193
DA A + + P +L P +
Sbjct: 231 GLPFTRVPLPVGTGNEDAADAVSTKKASKKTPKKDAVLSPVHVVEELFPDSKRYQKAMCL 290
Query: 194 QFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAG--GKMSSSEEDSKIDLLDAPA 251
G++Q F LA P++G+ K + + +PGL G KMS+S+ +S I L D PA
Sbjct: 291 IASGIEQDPYFRLARDLAPRMGHPKNAYLLGKFLPGLQGSGTKMSASDPNSAIYLTDTPA 350
Query: 252 LVKKKLKKAFCEPGNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLE 311
+K K+ + G + +F + ++ + ++ + L+
Sbjct: 351 QIKNKINRYAFSGGRDTEEEHRAFGADLSVD---------VSVRYLEVFMKDDAELEKLK 401
Query: 312 QVFAKQELHPADLKAAAEFYINRLLEPIRKKFESKELKDLTSKAYPPKKPV 362
+ +L ++KA + L++ ++ + ++ +++ KK +
Sbjct: 402 ADYKTGKLLTGEVKATLIGILQGLIKEHAERRD--KVDTTMIESFTVKKEL 450
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, amino acylation; HET: TRP; 2.60A
{Encephalitozoon cuniculi}
Length = 406
Score = 140 bits (353), Expect = 9e-37
Identities = 57/354 (16%), Positives = 113/354 (31%), Gaps = 52/354 (14%)
Query: 25 LITRNLQEFLGEDRLNVIL----KERDLKIYWGTATTGRP-HIAYFVPMSKIADFLRA-G 78
R + N++L R +Y G + + HI + +P A
Sbjct: 77 FFRRGI--VFAHRDFNLLLDEIANNRPFYLYTGRGPSSKTMHIGHTIPFLLCKYMQDAFK 134
Query: 79 CEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPISKLKFVKGTDYQLS 138
+ I D +L + +A + ++ + + ++ + S
Sbjct: 135 IRLVIQITDDEKFLWKSMRLEDAMAYGRENIKDIVT-------LGFDPKLTYIFSNVEAS 187
Query: 139 KEYTLDVYRLSSVITEHDAKKAGAEVVKQVEHPLLSGLLYPGLQALD--------EEYLK 190
+ ++ ++S I ++A K + + +P +
Sbjct: 188 HHFEENILKISKTINLNEAIKV----FGFDMSSNIGQVGFPAKEIAPCFSSSFRFIGKGA 243
Query: 191 VDAQFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAG--GKMSSSEEDSKIDLLD 248
+ VDQ F LA LG K ++P L G KMS+S+ +S I L D
Sbjct: 244 MCLVPAAVDQDPFFRLARDKAKALGEKKPSSIYVSLLPDLKGVNRKMSASDPNSSIYLDD 303
Query: 249 APALVKKKLKKAFCEPG------NVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNL 302
A ++KK+ G + E G + V F LK + D+
Sbjct: 304 AQDTIRKKIIAYAYSGGRKTLEEHREKGGDID--VDVPFEYLK----YFLDDDQE----- 352
Query: 303 NFSDYQSLEQVFAKQELHPADLKAAAEFYINRLLEPIRKKFESKELKDLTSKAY 356
+ + K E+ ++K I + ++ + + D +A+
Sbjct: 353 ----LEKYRSGYIKGEITSKEMKEKCVVVIQEFVSRYQESRK--RVTDDDLRAF 400
>1pxf_A Hypothetical protein YGJH; oligonucleotide-oligosaccharide binding
fold, OB fold, beta- barrel; 1.87A {Escherichia coli}
SCOP: b.40.4.4 PDB: 3ers_X
Length = 111
Score = 131 bits (331), Expect = 9e-37
Identities = 44/103 (42%), Positives = 64/103 (62%), Gaps = 3/103 (2%)
Query: 372 RLDIRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMANRLVVVLCNL 431
RL++RVGKIVEV RH +A+ LY+ ++D+G++ V+ LV Y E ++ + VVVLCNL
Sbjct: 11 RLEMRVGKIVEVKRHENADKLYIVQVDVGQK-TLQTVTSLVPYYSEEELMGKTVVVLCNL 69
Query: 432 KPAKMRGIESAGMVLCASVEEEGNKKVEPLFVPPSSKAGDKIV 474
+ AKMRG S M+LCA E + + L AG ++V
Sbjct: 70 QKAKMRGETSECMLLCA--ETDDGSESVLLTPERMMPAGVRVV 110
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding,
aminoacyl-tRNA synthetase, ligase, nucleotide-binding;
HET: TRP; 2.42A {Cryptosporidium parvum iowa II}
Length = 393
Score = 133 bits (336), Expect = 2e-34
Identities = 63/366 (17%), Positives = 118/366 (32%), Gaps = 51/366 (13%)
Query: 16 SLSFDEKKQLITRNLQEFLGEDRLNVIL----KERDLKIYWGTATTGRP-HIAYFVPMSK 70
L+ + RN+ FL IL K +Y G + H+ + VP
Sbjct: 41 RLTGQKAHHFFRRNI--FLSHRDFEKILDVYEKGELFYLYTGRGPSSESLHVGHLVPFLF 98
Query: 71 IADFLRA-GCEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPISKLKF 129
+ I D ++ E + I A
Sbjct: 99 TKYLQDTFKVPLVIQLTDDEKFIFKSNLTLEETHNYAYENMKDIIACG------FDPELT 152
Query: 130 VKGTDYQLSKEYTLDVYRLSSVITEHDAKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYL 189
T+ + E D+ R+ I+ K + + + +P +QA
Sbjct: 153 FIFTNLEYIAELYPDILRIEKKISCSQIKS----IFGFKDSCNVGKFAFPAVQAAPAFSS 208
Query: 190 KVDAQFG-----------GVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAG--GKMS 236
FG +DQ F + P+LGY K + +P L G KMS
Sbjct: 209 SFPHIFGGRTDIHCLVPHAIDQDPYFRMVRDVAPRLGYLKPSSIHSIFLPSLQGSQTKMS 268
Query: 237 SSEEDSKIDLLDAPALVKKKLKKAFCEPG--NVEDNGVLSF--LKHVVFSLLKPGENLVI 292
+S ++S I + D ++ K+ K G E+ L V + L+ ++
Sbjct: 269 ASVQNSSIFVNDNEESIRNKIMKYAFSGGQATEEEQRRLGANLDVDVSWQYLR----FLM 324
Query: 293 TRDENNGGNLNFSDYQSLEQVFAKQELHPADLKAAAEFYINRLLEPIRKKFES---KELK 349
DE + + + ++ E+ ++K+ + +L + +K E+ +
Sbjct: 325 EDDEK---------LEEIGKKYSSGEMLSGEIKSILVQELVKLTKNHQKNREAINDDVIA 375
Query: 350 DLTSKA 355
T+K+
Sbjct: 376 KFTNKS 381
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann
fold catalytical domain, recognition domain, bound
Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP:
a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A*
2quk_A
Length = 477
Score = 133 bits (337), Expect = 4e-34
Identities = 58/355 (16%), Positives = 112/355 (31%), Gaps = 48/355 (13%)
Query: 25 LITRNLQEFLGEDRLNVILKE----RDLKIYWGTATTGRP-HIAYFVPMSKIADF-LRAG 78
+ R + F +N +L + +Y G + H+ + +P
Sbjct: 131 FLRRGI--FFSHRDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFN 188
Query: 79 CEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPISKLKFVKGTDYQLS 138
+ I D YL + + I A D F +S
Sbjct: 189 VPLVIQMTDDEKYLWKDLTLDQAYGD-AVENAKDIIAC--GFD-INKTFIFSDLDYMGMS 244
Query: 139 KEYTLDVYRLSSVITEHDAKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQFG-- 196
+ +V ++ +T + K + + + + +P +QA F
Sbjct: 245 SGFYKNVVKIQKHVTFNQVKG----IFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDR 300
Query: 197 ---------GVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAG--GKMSSSEEDSKID 245
+DQ F + P++GY K + P L G KMS+S+ +S I
Sbjct: 301 TDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIF 360
Query: 246 LLDAPALVKKKLKKAFCEPGN--VEDNGVLSF--LKHVVFSLLKPGENLVITRDENNGGN 301
L D +K K+ K G +E++ V F L + D+
Sbjct: 361 LTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLT----FFLEDDDK---- 412
Query: 302 LNFSDYQSLEQVFAKQELHPADLKAAAEFYINRLLEPIRKKFESKELKDLTSKAY 356
+ + + + + +LK A + L+ + + + E+ D K +
Sbjct: 413 -----LEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRK--EVTDEIVKEF 460
>1mkh_A Metrs;, C-terminal domain of methionyl-tRNA synthetase; beta
barrel, dimerization domain, ligase; 2.01A {Pyrococcus
abyssi} SCOP: b.40.4.4
Length = 107
Score = 122 bits (308), Expect = 1e-33
Identities = 50/102 (49%), Positives = 67/102 (65%), Gaps = 5/102 (4%)
Query: 372 RLDIRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMANRLVVVLCNL 431
+LD+RVGKI+EV HP+A+ LYV K+DLG+E RT+V+GL Y K ++ NR VVV+ NL
Sbjct: 10 KLDLRVGKIIEVKDHPNADKLYVVKVDLGDE-VRTLVAGLKKYYKPEELLNRYVVVVANL 68
Query: 432 KPAKMRGIESAGMVLCASVEEEGNKKVEPLFVPPSSKAGDKI 473
+P K+RGI S GM+L A E +V L K G K+
Sbjct: 69 EPKKLRGIGSQGMLLAADDGE----RVALLMPDKEVKLGAKV 106
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann
fold catalytic domain, AN recognition domain, bound
Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP:
c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Length = 437
Score = 127 bits (321), Expect = 3e-32
Identities = 58/355 (16%), Positives = 111/355 (31%), Gaps = 48/355 (13%)
Query: 25 LITRNLQEFLGEDRLNVILKE----RDLKIYWGTATTGRP-HIAYFVPMSKIADF-LRAG 78
+ R + F +N +L + +Y G + H+ + +P
Sbjct: 84 FLRRGI--FFSHRDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFN 141
Query: 79 CEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPISKLKFVKGTDYQLS 138
+ I D YL + + I A D F +S
Sbjct: 142 VPLVIQMTDDEKYLWK-DLTLDQAYGDAVENAKDIIAC--GFD-INKTFIFSDLDYMGMS 197
Query: 139 KEYTLDVYRLSSVITEHDAKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQFG-- 196
+ +V ++ +T + K + + + +P +QA F
Sbjct: 198 SGFYKNVVKIQKHVTFNQVKGI----FGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDR 253
Query: 197 ---------GVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAG--GKMSSSEEDSKID 245
+DQ F + P++GY K + P L G KMS+S+ +S I
Sbjct: 254 TDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIF 313
Query: 246 LLDAPALVKKKLKKAFCEPGN--VEDNGVLSF--LKHVVFSLLKPGENLVITRDENNGGN 301
L D +K K+ K G +E++ V F L + D+
Sbjct: 314 LTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLT----FFLEDDDK---- 365
Query: 302 LNFSDYQSLEQVFAKQELHPADLKAAAEFYINRLLEPIRKKFESKELKDLTSKAY 356
+ + + + + +LK A + L+ + + + E+ D K +
Sbjct: 366 -----LEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRK--EVTDEIVKEF 413
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics,
medical structural GEN pathogenic protozoa, MSGPP,
ligase; 3.00A {Entamoeba histolytica}
Length = 386
Score = 115 bits (289), Expect = 3e-28
Identities = 52/353 (14%), Positives = 105/353 (29%), Gaps = 51/353 (14%)
Query: 25 LITRNLQEFLGEDRLNVILKE----RDLKIYWGTATTGRPHIAYFVPMSKIADFLRA-GC 79
++R + FL E L+ L + + I+ + ++ + A
Sbjct: 58 YLSRGV--FLAEKSLDKFLDDVEAKKPTFIFIQKYPQKEVALEEYITLEFARYLQDAFNI 115
Query: 80 EVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPISKLKFVKGTDYQLSK 139
+V I D L+ E + S M + ++ K TDYQ
Sbjct: 116 QVIIQILDDIKVLNREATINEA-------SKMSNDLMKYILAFGFNEDKTFIYTDYQYFG 168
Query: 140 EYTLDVYRLSSVITEHDAKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQFG--- 196
+ + + + + + L P + F
Sbjct: 169 KMYRTISLVEKATAYNVVQP----FFNFEYSDNIGKLASPSIMTASMFSQSYSHFFSSPA 224
Query: 197 ------GVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAG-GKMSSSEEDSKIDLLDA 249
+ + ++ ++ L + + + MVP L+G K + + I L D
Sbjct: 225 RCLVLDSIKNVQFHSIIDQIATTLNFIQPTVLFHKMVPLLSGVTKFDIPSDHNSILLSDN 284
Query: 250 PALVKKKLKKAFCEPGNV------EDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLN 303
V++K+ K G + G V F LL + + +
Sbjct: 285 AKQVERKINKLAFSGGRNTTEEHKKLGGQCD--IDVSFQLLN----IFSSDNAQ------ 332
Query: 304 FSDYQSLEQVFAKQELHPADLKAAAEFYINRLLEPIRKKFESKELKDLTSKAY 356
+ +E+ ++K EL +LK + + K + + KAY
Sbjct: 333 ---VKDVEEKYSKGELLSGELKKIVSASMKDFIVAYDAKKK--PITTAYLKAY 380
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A
{Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Length = 722
Score = 114 bits (288), Expect = 5e-27
Identities = 53/166 (31%), Positives = 80/166 (48%), Gaps = 7/166 (4%)
Query: 308 QSLEQVFAKQELHPADLKAAAEFYINRLLEPIRKKFESKELKDLTSKAYPPKKPVVESDI 367
+ + + + + + K+ V+ D
Sbjct: 563 KGNPEGARILLDKYYKREDVIRVAKEKFGDEAEVVLRRVYKDIKLKEKKEGKEMYVKFDD 622
Query: 368 IAPHRLDIRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMANRLVVV 427
A +LD+RVGKI+EV HP+A+ LYV K+DLG+E RT+V+GL Y K ++ NR VVV
Sbjct: 623 FA--KLDLRVGKIIEVKDHPNADKLYVVKVDLGDE-VRTLVAGLKKYYKPEELLNRYVVV 679
Query: 428 LCNLKPAKMRGIESAGMVLCASVEEEGNKKVEPLFVPPSSKAGDKI 473
+ NL+P K+RGI S GM+L A + ++V L K G K+
Sbjct: 680 VANLEPKKLRGIGSQGMLLAA----DDGERVALLMPDKEVKLGAKV 721
>2cwp_A Metrs related protein; structural GEN riken structural
genomics/proteomics initiative, RSGI; 2.10A {Pyrococcus
horikoshii}
Length = 112
Score = 103 bits (259), Expect = 1e-26
Identities = 28/102 (27%), Positives = 52/102 (50%), Gaps = 4/102 (3%)
Query: 372 RLDIRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMANRLVVVLCNL 431
+ ++VG + + + + L +D G E RTIV+G+ + + ++ + + + NL
Sbjct: 14 KFQMKVGLVKKAEKIKRTKKLIKLIVDFGNEE-RTIVTGIADQIPPEELEGKKFIFVVNL 72
Query: 432 KPAKMRGIESAGMVLCASVEEEGNKKVEPLFVPPSSKAGDKI 473
KP K G+ES GM++ A E + KV + VP G ++
Sbjct: 73 KPKKFSGVESQGMLILA---ETEDGKVYLIPVPEEVPVGARV 111
>1pyb_A Methionyl-tRNA synthetase beta subunit; oligonucleotide,
oligosaccharide-binding fold, OB-fold, beta-barrel, RNA
binding protein; 2.50A {Aquifex aeolicus} SCOP: b.40.4.4
Length = 111
Score = 101 bits (255), Expect = 3e-26
Identities = 32/102 (31%), Positives = 55/102 (53%), Gaps = 5/102 (4%)
Query: 372 RLDIRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMANRLVVVLCNL 431
++D+RV K++ R +E L + LG+E RT+V+G+ Y ++ + +V++ NL
Sbjct: 14 KVDLRVAKVLSAERVEGSEKLLKLTLSLGDE-ERTVVAGIAKYYTPEELVGKKIVIVANL 72
Query: 432 KPAKMRGIESAGMVLCASVEEEGNKKVEPLFVPPSSKAGDKI 473
KP K+ GIES GM+L A + + + K G K+
Sbjct: 73 KPRKIFGIESQGMILAA----SDGENLSVIVPDRDVKEGAKL 110
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics,
PSI-2, protein structure initiative; HET: PG4; 1.80A
{Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A*
3kt8_A*
Length = 432
Score = 106 bits (265), Expect = 7e-25
Identities = 57/364 (15%), Positives = 108/364 (29%), Gaps = 49/364 (13%)
Query: 25 LITRNLQEFLGEDRLNVILKE----RDLKIYWGTATTGRP-HIAYFVPMSKIADFLRA-G 78
+ + L F E IL + +Y G + H+ + +P
Sbjct: 78 FLRKGL--FFSERDFTKILDLYEQGKPFFLYTGRGPSSDSMHLGHMIPFVFTKWLQEVFD 135
Query: 79 CEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPISKLKFVKGTDYQLS 138
+ I D +L K + + + I A+ D Y
Sbjct: 136 VPLVIELTDDEKFLFKHKLTINDVKNFARENAKDIIAV--GFDP--KNTFIFSDLQYMGG 191
Query: 139 KEYTLDVYRLSSVITEHDAKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQFG-- 196
Y V R+S IT AK V + + + +Q G
Sbjct: 192 AFYET-VVRVSRQITGSTAKA----VFGFNDSDCIGKFHFASIQIATAFPSSFPNVLGLP 246
Query: 197 ---------GVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAG--GKMSSSEEDSKID 245
+DQ F + +L Y+K + P L G KMS+S++ + I
Sbjct: 247 DKTPCLIPCAIDQDPYFRVCRDVADKLKYSKPALLHSRFFPALQGSTTKMSASDDTTAIF 306
Query: 246 LLDAPALVKKKLKKAFCEPG--NVEDNGVLSF--LKHVVFSLLKPGENLVITRDENNGGN 301
+ D P ++KK+ K G + + + L V + L D
Sbjct: 307 MTDTPKQIQKKINKYAFSGGQVSADLHRELGGNPDVDVAYQYLS----FFKDDDV----- 357
Query: 302 LNFSDYQSLEQVFAKQELHPADLKAAAEFYINRLLEPIRKKFESKELKDLTSKAYPPKKP 361
+ + EL ++K + ++ +++ ++ + T +
Sbjct: 358 ----FLKECYDKYKSGELLSGEMKKLCIETLQEFVKAFQERRA--QVDEETLDKFMVPHK 411
Query: 362 VVES 365
+V
Sbjct: 412 LVWG 415
>2e8g_A Hypothetical protein PH0536;
oligonucleotide/oligosaccharide-binding fold,
alpha-helices bundle, structural genomics, NPPSFA; 1.70A
{Pyrococcus horikoshii}
Length = 241
Score = 101 bits (252), Expect = 2e-24
Identities = 36/140 (25%), Positives = 54/140 (38%), Gaps = 25/140 (17%)
Query: 363 VESDIIAPHRLDIRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMAN 422
+ +DI VG+++ V +HP A+ L V +++GE T+V+ + VKEG+
Sbjct: 126 LGKINDPVIAVDIVVGEVMSVGKHPSADRLLVTNVNIGER-AVTVVTNDLT-VKEGN--- 180
Query: 423 RLVVVLCNLKPAKMRGIESAGMVLCASVEEEGNKKVEPLFVPPSSKAGDKIVVEGYETGA 482
V + L P GI S GM + E + P G
Sbjct: 181 --RVAVALLPPRNFFGIVSEGM-FLGAGEGVLKNVKGEIGGLPK--------------GI 223
Query: 483 PDEILNPKKKVWEKLQVDLK 502
P E LN + E LK
Sbjct: 224 PLEALNETRNAVE---AFLK 240
>1gd7_A CSAA protein; oligonucleotide-binding fold, functional dimer,
hydrophobic cavity, riken structural genomics/proteomics
initiative, RSGI; 2.00A {Thermus thermophilus} SCOP:
b.40.4.4
Length = 109
Score = 91.4 bits (228), Expect = 2e-22
Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 4/103 (3%)
Query: 372 RLDIRVGKIVEVSRHPDAE-ALYVEKIDLGEENPRTIVSGLVNYVKEGDMANRLVVVLCN 430
LD+RVG+++ H A Y +DLG + + + + D+ RLVV N
Sbjct: 9 ILDLRVGRVLRAEPHEKARKPSYKLWVDLGPLGVKQSSAQITELYRPEDLVGRLVVCAVN 68
Query: 431 LKPAKMRGIESAGMVLCASVEEEGNKKVEPLFVPPSSKAGDKI 473
L ++ G S +VL + +V L G K+
Sbjct: 69 LGAKRVAGFLSEVLVLGV---PDEAGRVVLLAPDREVPLGGKV 108
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding,
aminoacyl-tRNA synthetase, LIG nucleotide-binding,
protein biosynthesis; 2.80A {Trypanosoma brucei}
Length = 395
Score = 98.1 bits (244), Expect = 3e-22
Identities = 58/341 (17%), Positives = 101/341 (29%), Gaps = 49/341 (14%)
Query: 25 LITRNLQEFLGEDRLNVILKE----RDLKIYWGTATTGRP-HIAYFVPMSKIADFLRA-G 78
+ R + F LN++L + +Y G + H+ + +P +
Sbjct: 54 FLRRGI--FFSHRDLNLLLDVYESGQPFYLYTGRGPSSESMHMGHLIPFMFTKWLQDSFR 111
Query: 79 CEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPISKLKFVKGTDYQLS 138
+ I D + P E + T + I AM D D+
Sbjct: 112 VPLVIQMTDDEKFYFR-NIPMEQVEAMTTENIKDIIAM--GFD----PELTFIFRDFDYM 164
Query: 139 KEYTLDVYRLSSVITEHDAKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQF--- 195
V ++ T + ++P +QA F
Sbjct: 165 GCMYRTVAKIERAFTASQVRGC----FGFAMEDNCGRWMFPAIQAAPSFSAAFPHIFPPS 220
Query: 196 ---------GGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAGGK-MSSSEEDSKID 245
+DQ F L P+LGY K + PGL+G K SS + +
Sbjct: 221 MGNVFCLIPQAIDQDPYFRLTRDIAPRLGYLKPAVIHSKFFPGLSGPKGKMSSSSGTAVL 280
Query: 246 LLDAPALVKKKLKK-AFCEPGNVEDNGVLSFLK---HVVFSLLKPGENLVITRDENNGGN 301
L D +VK K+ K AF G + L V L + DE
Sbjct: 281 LTDTEKMVKDKINKHAFSGGGATKQEHFLLGANVEVDVPIQWLS----FFLEDDEE---- 332
Query: 302 LNFSDYQSLEQVFAKQELHPADLKAAAEFYINRLLEPIRKK 342
+++ + + ++K I + + ++K
Sbjct: 333 -----LARVKKEYMLGRIMTGEVKKLLINTITAITKTHQEK 368
>2q2i_A AGR_C_4014P, secretion chaperone; beta barrel, OB fold, homodimer,
protein secretio; 1.55A {Agrobacterium tumefaciens str}
Length = 116
Score = 89.1 bits (222), Expect = 2e-21
Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 5/104 (4%)
Query: 372 RLDIRVGKIVEVSRHPDAE-ALYVEKIDLGEEN-PRTIVSGLVNYVKEGDMANRLVVVLC 429
++DIRVG IVE P+A KID G E + + + + + R V+ +
Sbjct: 15 KVDIRVGTIVEAVPFPEARKPAIKVKIDFGPEIGIKKSSAQITVHYTPESLVGRQVLGVV 74
Query: 430 NLKPAKMRGIESAGMVLCASVEEEGNKKVEPLFVPPSSKAGDKI 473
N P ++ S + L + N + V G+K+
Sbjct: 75 NFPPRQIGPFRSEVLTLGF---ADANGDIVLAAVERPVPNGEKM 115
>3g48_A Chaperone CSAA; structural genomics, niaid structural centers for
infectious diseases, center for structural GENO
infectious diseases; 1.50A {Bacillus anthracis}
Length = 112
Score = 88.4 bits (220), Expect = 2e-21
Identities = 22/105 (20%), Positives = 43/105 (40%), Gaps = 8/105 (7%)
Query: 372 RLDIRVGKIVEVSRHPDAE-ALYVEKIDLGEENPRTIVSGLVNYVKEGDMANRLVVVLCN 430
LD+R+G + +A +ID GE + + + D+ + +V + N
Sbjct: 12 TLDLRIGTVTHAEEFKEARVPAIRLEIDFGELGMKQSSAQITKRYNPEDLIGQQIVAVVN 71
Query: 431 LKPAKMRGIESAGMVLCASVEEEGNKKVEPLFVPPSSKA--GDKI 473
P ++ G +S +VL E + + + P+ + G KI
Sbjct: 72 FPPKRVAGFKSEVLVLGGVPEAG-----DVVLLQPNMELPNGTKI 111
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann
fold, crystallography, X-RAY, P. horikoshii,
aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus
horikoshii}
Length = 392
Score = 95.2 bits (237), Expect = 2e-21
Identities = 62/333 (18%), Positives = 109/333 (32%), Gaps = 57/333 (17%)
Query: 33 FLGEDRLNVILKE----RDLKIYWGTATTGRPHIAYFVPMSKIADFLRA-GCEVTILFAD 87
F ++ILK+ R +Y G +G HI + +P G + I D
Sbjct: 55 FFSHRDYDLILKDYEEGRGFFLYTGRGPSGPMHIGHIIPFFATKWLQEKFGVNLYIQITD 114
Query: 88 LHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPISKLKFVKGTDYQLSKEYTLDVYR 147
+L ++ I A+ D K + +++ +
Sbjct: 115 DEKFLFKENLTFDDTKRWAYDNILDIIAV--GFDP--DKTFIFQNSEF---TKIYEMAIP 167
Query: 148 LSSVITEHDAKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQF-GGVDQRKIFTL 206
++ I AK V E + + +P +Q + + +DQ + L
Sbjct: 168 IAKKINFSMAKA----VFGFTEQSKIGMIFFPAIQIAPTFFERKRCLIPAAIDQDPYWRL 223
Query: 207 AEKYLPQLGYAKRIHFMNPMVPGLAG--GKMSSSEEDSKIDLLDAPALVKKKLKKAFC-- 262
+ LGY K + VP L GKMS+S+ ++ I L D+P V+KK+ K
Sbjct: 224 QRDFAESLGYYKTAALHSKFVPSLTSLSGKMSASKPETAIYLTDSPEDVEKKVWKFTLTG 283
Query: 263 ----------EPGNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQ 312
+ G E VVF L+ D + L++
Sbjct: 284 GRPTLKEQREKGGEPEKC--------VVFKWLE---------------IFFEEDDKKLKE 320
Query: 313 VFAKQ---ELHPADLKAAAEFYINRLLEPIRKK 342
+ EL + K I L+ +++
Sbjct: 321 RYYACKNGELTCGECKRYLISKIQEFLKEHQRR 353
>2q2h_A AGR_C_4014P, secretion chaperone, phage-display derived peptid;
beta barrel, OB fold, homodimer, protein secretio; HET:
CIT; 1.65A {Agrobacterium tumefaciens str}
Length = 131
Score = 87.7 bits (218), Expect = 7e-21
Identities = 26/132 (19%), Positives = 45/132 (34%), Gaps = 7/132 (5%)
Query: 344 ESKELKDLTSKAYPPKKPVVESDIIAPHRLDIRVGKIVEVSRHPDAE-ALYVEKIDLGEE 402
K + + ++DIRVG IVE P+A KID G E
Sbjct: 4 MVPGQKQHYVQPTAANSGEISYADFE--KVDIRVGTIVEAVPFPEARKPAIKVKIDFGPE 61
Query: 403 N-PRTIVSGLVNYVKEGDMANRLVVVLCNLKPAKMRGIESAGMVLCASVEEEGNKKVEPL 461
+ + + + + R V+ + N P ++ S + L + N +
Sbjct: 62 IGIKKSSAQITVHYTPESLVGRQVLGVVNFPPRQIGPFRSEVLTLGF---ADANGDIVLA 118
Query: 462 FVPPSSKAGDKI 473
V G+K+
Sbjct: 119 AVERPVPNGEKM 130
>2nzh_A Protein CSAA; beta barrel, oligonucleotide/oligosaccharide binding
fold, H chaperone; 1.90A {Bacillus subtilis} PDB: 2nzo_A
Length = 113
Score = 86.0 bits (214), Expect = 1e-20
Identities = 28/104 (26%), Positives = 42/104 (40%), Gaps = 5/104 (4%)
Query: 372 RLDIRVGKIVEVSRHPDAE-ALYVEKIDLGEE-NPRTIVSGLVNYVKEGDMANRLVVVLC 429
+LDIR G IV+ P+A ID G E + + + K + N+ V+ +
Sbjct: 12 KLDIRTGTIVKAEEFPEARVPAIKLVIDFGTEIGIKQSSAQITKRYKPEGLINKQVIAVV 71
Query: 430 NLKPAKMRGIESAGMVLCASVEEEGNKKVEPLFVPPSSKAGDKI 473
N P ++ G +S +VL G V L G KI
Sbjct: 72 NFPPRRIAGFKSEVLVLGG---IPGQGDVVLLQPDQPVPNGTKI 112
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation,
tRNA-binding, DNA-binding domain, four-helix
aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP;
3.02A {Escherichia coli}
Length = 795
Score = 70.2 bits (173), Expect = 9e-13
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 17/88 (19%)
Query: 374 DIRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMANRLVVVLC---- 429
+ VG++VE ++HP+A+ L V K+++G + IV G N ++G V +
Sbjct: 44 GVVVGEVVECAQHPNADKLRVTKVNVGGDRLLDIVCGAPN-CRQGL-----RVAVATIGA 97
Query: 430 ------NLKPAKMRGIESAGMVLCASVE 451
+K AK+RG S GM LC+ E
Sbjct: 98 VLPGDFKIKAAKLRGEPSEGM-LCSFSE 124
>3bu2_A Putative tRNA-binding protein; structural genomics, PSI-2, protein
structure initiative; 2.70A {Staphylococcus
saprophyticus subsp}
Length = 199
Score = 65.1 bits (159), Expect = 2e-12
Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 14/97 (14%)
Query: 363 VESDIIAPHRLDIRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMAN 422
+ A VG + +HPDA+ L V +D+ E IV G N V+ G
Sbjct: 81 FTYKLDADFTPKFVVGYVETKDKHPDADKLSVLSVDVATE-KLQIVCGAPN-VEAGQ--- 135
Query: 423 RLVVVLCN--------LKPAKMRGIESAGMVLCASVE 451
++VV +K A++RG+ S+GM +C+ E
Sbjct: 136 KVVVAKVGAVMPSGMVIKDAELRGVASSGM-ICSMKE 171
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 67.8 bits (165), Expect = 6e-12
Identities = 93/588 (15%), Positives = 166/588 (28%), Gaps = 208/588 (35%)
Query: 55 ATTGRP----H----IAYFVPMSK--IADFLRAGCEVTILFA-DLHAYLDNMKAPWELLA 103
A + RP H VP + IA L+ + + A D P EL+
Sbjct: 3 AYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVG 62
Query: 104 LRTKY---------------YEESIKAMLESIDVPISKLKFVKGTD-----YQLSKEYTL 143
K+ +++ + L + +++G D +L +E
Sbjct: 63 ---KFLGYVSSLVEPSKVGQFDQVLNLCLTEFEN-----CYLEGNDIHALAAKLLQENDT 114
Query: 144 DVYRLSSVITEHDAKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQFGGVDQ--- 200
+ + +I + A + + S L +A+ E ++ A FGG Q
Sbjct: 115 TLVKTKELIK--NYITARIMAKRPFDKKSNSALF----RAVGEGNAQLVAIFGG--QGNT 166
Query: 201 -------RKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAGGKMSSSEEDSK-----IDLLD 248
R ++ + Y +G I F + L ++ + K +++L+
Sbjct: 167 DDYFEELRDLY---QTYHVLVGDL--IKFSAETLSELI----RTTLDAEKVFTQGLNILE 217
Query: 249 APALVKKKLKKAFCEPGNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQ 308
L+ P +L + S P +I G + + Y
Sbjct: 218 W-------LENPSNTPDK-------DYLLSIPISC--P----LI-------GVIQLAHY- 249
Query: 309 SLEQVFAKQ-ELHPADLK---------------AAA--------EFYINRLLEPIRKKF- 343
V AK P +L+ A A F+++ + + I F
Sbjct: 250 ---VVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVS-VRKAITVLFF 305
Query: 344 ---ESKELKDLTSKAYPPK--KPVVESDII-----AP-HRLDIR------VGKIVE-VSR 385
E AYP P + D + P L I V V +
Sbjct: 306 IGVRCYE-------AYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNS 358
Query: 386 H-PDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMANRLVV-----VLCNLKPAKMRGI 439
H P + + + LVN G A LVV L L +R
Sbjct: 359 HLPAGKQVEI---------------SLVN----G--AKNLVVSGPPQSLYGLNLT-LRKA 396
Query: 440 ESAGMVLCASVEEEGNKKVEPLFVPPSSKAGDKIVVEGYETGAP--DEILNPKKKVWEKL 497
A + ++ P S+ K +P +L P + +
Sbjct: 397 -------KAPSGLDQSRI-------PFSERKLKFSNRFLPVASPFHSHLLVP---ASDLI 439
Query: 498 QVDLKTSSEGI--AQWQGFNIYWVPTLHFELWENFNENKSDNDTKLED 543
DL ++ Q +P + ++ D
Sbjct: 440 NKDLVKNNVSFNAKDIQ------IPVYDTFDGSDLRVLSGSISERIVD 481
Score = 55.8 bits (134), Expect = 3e-08
Identities = 60/350 (17%), Positives = 106/350 (30%), Gaps = 132/350 (37%)
Query: 143 LDVYRLSSVITEHDAKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQFGGVDQRK 202
+D+Y+ S A+ +V + ++ + L + + + FGG ++
Sbjct: 1633 MDLYKTSKA-----AQ----DVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKR 1683
Query: 203 IFTLAEKYLPQLGYAKRIHFMNPMVPGLAGGKMSS-------SEEDSKI------DLLDA 249
I R ++ + + GK+ + +E + LL A
Sbjct: 1684 I---------------RENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSA 1728
Query: 250 -----PALV------KKKLKKAFCEPGNVEDNGVLSFLKHVVFSLLKPGEN--LVITRDE 296
PAL + LK P + +F H SL GE L
Sbjct: 1729 TQFTQPALTLMEKAAFEDLKSKGLIPADA------TFAGH---SL---GEYAALASL--- 1773
Query: 297 NNGGNLNFSDYQSLEQVF----AKQELHPADLKAAAEFYINRLLEPIRKKFESKELKDLT 352
++ +E VF Q P D + +
Sbjct: 1774 --ADVMSIES--LVEVVFYRGMTMQVAVPRDELGRSNY---------------------- 1807
Query: 353 SKAYPPKKPVVESDIIAPHRLDIRVGKIVEVSRHPDAEAL--YVEKIDLGEENPRTIVSG 410
+IA I G++ EAL VE++ G+ +V
Sbjct: 1808 -------------GMIA-----INPGRVAASF---SQEALQYVVERV--GKRTGW-LVE- 1842
Query: 411 LVNY-------VKEGDMANRLVVVLCN-LKPAKMRGIESAGMVLCASVEE 452
+VNY V GD+ + + N L K++ I+ + S+EE
Sbjct: 1843 IVNYNVENQQYVAAGDLRA--LDTVTNVLNFIKLQKIDIIELQKSLSLEE 1890
Score = 47.7 bits (113), Expect = 9e-06
Identities = 55/307 (17%), Positives = 87/307 (28%), Gaps = 88/307 (28%)
Query: 245 DLLDAPALVKKKLKKAFCEPGNVEDNGVLSFLKHVVFSLLK-----PGENLVITRDENNG 299
DL + +A DN F FS+L P L I G
Sbjct: 1634 DLYKTSKAAQDVWNRA--------DN---HFKDTYGFSILDIVINNPVN-LTIHFGGEKG 1681
Query: 300 GNLNFSDYQSLEQVFAKQELHPADLKAAAEFYINRLLEPIRKK-FES-KELKDLTSKAYP 357
+ +Y ++ +F D K E + E F S K L T P
Sbjct: 1682 KRIR-ENYSAM--IFE----TIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQP 1734
Query: 358 --------------PKKPVVESDIIAPHRLDIRVGKIVE----VSRHPDAEALYVEK-ID 398
K + A H L G E S A+ + +E ++
Sbjct: 1735 ALTLMEKAAFEDLKSKGLIPADATFAGHSL----G---EYAALASL---ADVMSIESLVE 1784
Query: 399 L----GEENPRTIVSGLVNYVKEGDMANRLVVVLCNLKPAKMR--GIESAGMVLCASVEE 452
+ G + D R + + P ++ + A + V +
Sbjct: 1785 VVFYRGM---------TMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGK 1835
Query: 453 EGNKKVEPL-F-VPPSSKAGDKIVVEGYETGAPD---EILN----PKKKVWEKLQVDLKT 503
VE + + V + V G + A D +LN K + +LQ L
Sbjct: 1836 RTGWLVEIVNYNVE-----NQQYVAAG-DLRALDTVTNVLNFIKLQKIDI-IELQKSL-- 1886
Query: 504 SSEGIAQ 510
S E +
Sbjct: 1887 SLEEVEG 1893
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer,
phenylalanine, aminoacyl-tRNA synthetase, ATP-binding,
cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus
haemolyticus} PDB: 2rhs_B*
Length = 795
Score = 59.1 bits (144), Expect = 3e-09
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 17/83 (20%)
Query: 377 VGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMANRLVVVLCN------ 430
VG I + + ++D+GEE P IV G N V G ++V
Sbjct: 47 VGYIQSKEKGSGN----ICQVDIGEEEPVQIVCGAPN-VDAGQ---HVIVAKVGGRLPGG 98
Query: 431 --LKPAKMRGIESAGMVLCASVE 451
+K AK+RG S GM +C+ E
Sbjct: 99 IKIKRAKLRGERSEGM-ICSLQE 120
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta
homodimer, ligase; HET: FYA; 2.50A {Thermus
thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1
d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B
2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Length = 785
Score = 58.3 bits (142), Expect = 4e-09
Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 21/88 (23%)
Query: 375 IRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMANRLVVVLC----- 429
+ +++E P L +D G +VSG N ++G V L
Sbjct: 45 VVFARVLEAHPIPGTR-LKRLVLDAGR--TVEVVSGAEN-ARKGI-----GVALALPGTE 95
Query: 430 ------NLKPAKMRGIESAGMVLCASVE 451
+ ++G+ S GM + E
Sbjct: 96 LPGLGQKVGERVIQGVRSFGM-ALSPRE 122
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint
center for struc genomics, JCSG, protein structure
initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga
maritima}
Length = 340
Score = 56.8 bits (138), Expect = 6e-09
Identities = 43/199 (21%), Positives = 68/199 (34%), Gaps = 63/199 (31%)
Query: 175 GLL-YPGLQALDEEYLKVDAQF--GGVDQ-------RKI-----------FTLAEKYLPQ 213
G L YP LQA D L A+ G DQ R+I F E L +
Sbjct: 137 GFLIYPVLQAAD--ILIYKAEGVPVGEDQVYHIELTREIARRFNYLYDEVFPEPEAILSR 194
Query: 214 LGYAKRIHFMNPMVPGLAGGKMSSSEEDSKIDLLDAPALVKKKLKKAF--------CEPG 265
+ P +PG G KMS S + I+L + +++ + + +PG
Sbjct: 195 V----------PKLPGTDGRKMSKSY-GNIINLEISEKELEQTILRMMTDPARVRRSDPG 243
Query: 266 NVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAKQELHPADLK 325
N E+ V + + F + E + ++ D K+ L
Sbjct: 244 NPENCPVWKYHQ--AFDI--SEEESKWVWEGCTTASIGCVD--------CKKLL------ 285
Query: 326 AAAEFYINRLLEPIRKKFE 344
+ + R L PI + F
Sbjct: 286 --LK-NMKRKLAPIWENFR 301
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.2 bits (137), Expect = 1e-08
Identities = 87/625 (13%), Positives = 174/625 (27%), Gaps = 192/625 (30%)
Query: 23 KQLITRNLQEFLG-------EDRLNVILKERDLK--------------IYWGTATTGRPH 61
K +++ F+ +D IL + ++ ++W +
Sbjct: 19 KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM 78
Query: 62 IAYFV--PMSKIADFLRAGCEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLES 119
+ FV + FL + + P ++ T+ Y E +
Sbjct: 79 VQKFVEEVLRINYKFL------------MSPIKTEQRQP----SMMTRMYIEQRDRLYND 122
Query: 120 IDVPISKLKFVKGTDYQLSKEYTLD--VYRLSSV--ITEHDAKKAGAEVVKQVEHPLLSG 175
V F K +L L + L + +G K ++
Sbjct: 123 NQV------FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG----KTW----VA- 167
Query: 176 LLYPGLQALDEEYLKVDAQFGGVDQRKIF--TLAEKYLPQLGYAKRIHFMNPMVPGLAGG 233
L KV + KIF L P+ + + P
Sbjct: 168 -----LDVCLSY--KVQCKMDF----KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216
Query: 234 KMSSSEEDSKIDLLDAPALVKKKLKKAFCEPG---------NVEDNGVLSFLKHVVFSLL 284
SS +I + + +L++ NV++ + F+L
Sbjct: 217 SDHSSNIKLRIHSI------QAELRRLLKSKPYENCLLVLLNVQNAKAWN-----AFNL- 264
Query: 285 KPG-ENLVITRDENNGGNLNFSDYQSLEQVFAKQELHPADLKAAAEFYINRLLEPIRKKF 343
+ L+ TR + L+ + + L P ++K+ LL K+
Sbjct: 265 --SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS--------LLL----KY 310
Query: 344 ESKELKDLTSKAYPPKK----PVVESDIIA------PHRLD-------IRVGKIVEVS-- 384
+DL P + P S IIA D ++ I+E S
Sbjct: 311 LDCRPQDL-----PREVLTTNPRRLS-IIAESIRDGLATWDNWKHVNCDKLTTIIESSLN 364
Query: 385 --RHPDAEALYVE--------KI----------DLGEENPRTIVSGLVNYVKEGDMANRL 424
+ ++ I D+ + + +V+ L Y
Sbjct: 365 VLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY---------- 414
Query: 425 VVVLCNLKPAKMR-GIESAGMVLCASVEEEG---NKKVEPLFVPPSSKAGD--KIVVEGY 478
L +P + I S + L +E E V+ +P + + D ++ Y
Sbjct: 415 --SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472
Query: 479 ---------ETGAPDEILNPKKKVWEKLQVDL-----KTSSEGIAQWQGFNIYWVPTLH- 523
+ E + ++ + +D K + A W + TL
Sbjct: 473 FYSHIGHHLKNIEHPE----RMTLFRMVFLDFRFLEQKIRHDSTA-WNASG-SILNTLQQ 526
Query: 524 FELWENF-NENKSDNDTKLEDISGF 547
+ ++ + +N + + I F
Sbjct: 527 LKFYKPYICDNDPKYERLVNAILDF 551
Score = 48.3 bits (114), Expect = 7e-06
Identities = 66/403 (16%), Positives = 132/403 (32%), Gaps = 124/403 (30%)
Query: 9 SLNMTSPSLSFDEKKQLITRNLQEFLGEDRLNVILKERDLKIYWGTATTGRPHIAYFVPM 68
SL+ S +L+ DE K L L ++L + +DL T P +
Sbjct: 290 SLDHHSMTLTPDEVKSL----LLKYLD-------CRPQDLPR---EVLTTNP----RR-L 330
Query: 69 SKIADFLRAGCEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPISKLK 128
S IA+ +R + A W+ K+ + I+ ++ L+
Sbjct: 331 SIIAESIR-----------------DGLATWD----NWKHVN--CDKLTTIIESSLNVLE 367
Query: 129 FVKGTDYQLSKEYT-LDVYRLSSVITEHDAKKAGAEVVKQVEHPLLSGLLYPGLQALDEE 187
+Y+ K + L V+ S+ I LLS L++ + D
Sbjct: 368 P---AEYR--KMFDRLSVFPPSAHIPTI----------------LLS-LIWFDVIKSDVM 405
Query: 188 YLKVDAQFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAGGKMSSSEEDSKIDLL 247
+ V++ ++L EK + I + + K+ L
Sbjct: 406 VV--------VNKLHKYSLVEKQPKESTI--SIP-------SIY--------LELKVKLE 440
Query: 248 DAPALVKK-----KLKKAFCEPG---NVEDNGVLSFLK-HVVFSLLKPGENLVITRDENN 298
+ AL + + K F D S + H LK E+ +
Sbjct: 441 NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH-----LKNIEHP----ERMT 491
Query: 299 GGNLNFSDYQSLEQVFAKQELHPADLKAAAEFYINRLLEPIR--KKF--ESKELKDLTSK 354
+ F D++ F +Q++ A I L+ ++ K + ++ +
Sbjct: 492 LFRMVFLDFR-----FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVN 546
Query: 355 AYPPKKPVVESDII-APHRLDIRVGKIVEVSRHPDAEALYVEK 396
A P +E ++I + + ++ ++ + EA++ E
Sbjct: 547 AILDFLPKIEENLICSKYT------DLLRIALMAEDEAIFEEA 583
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for
structural genomics of infec diseases, csgid, alpha-beta
structure; HET: ADP TRP; 2.15A {Campylobacter jejuni
subsp} PDB: 3m5w_A*
Length = 322
Score = 54.8 bits (133), Expect = 2e-08
Identities = 39/197 (19%), Positives = 61/197 (30%), Gaps = 61/197 (30%)
Query: 175 GLL-YPGLQALDEEYLKVDAQFG--GVDQR------------------KIFTLAEKYLPQ 213
GL YP L A D L D + G DQ +IFTL E + +
Sbjct: 123 GLFSYPVLMAAD--ILLFDTRIVPVGKDQIQHVEIARDIALKVNNEWGEIFTLPEARVNE 180
Query: 214 LGYAKRIHFMNPMVPGLAGGKMSSSEEDSKIDLLDAPALVKKKLKKA------FCEPGNV 267
+V G G KMS S + ID+ + +KK++ +P +
Sbjct: 181 EV---------AVVVGTDGAKMSKSY-QNTIDIFSSEKTLKKQISSIVTDSTALEDPKDH 230
Query: 268 EDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAKQELHPADLKAA 327
E+ + K L + G + K L +L
Sbjct: 231 ENCNIFKIAK-----LFLDESGQKELQIRYEKGGEGYGH--------FKIYL--NEL--- 272
Query: 328 AEFYINRLLEPIRKKFE 344
+N + R+K+
Sbjct: 273 ----VNAYFKEAREKYN 285
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase,
translation, structural GEN NPPSFA; 2.50A {Thermus
thermophilus}
Length = 337
Score = 52.9 bits (128), Expect = 1e-07
Identities = 44/200 (22%), Positives = 67/200 (33%), Gaps = 64/200 (32%)
Query: 175 GLL-YPGLQALDEEYLKVDAQF--GGVDQR------------------KIFTLAEKYLPQ 213
GLL YP LQA D L A G DQ + F + L
Sbjct: 125 GLLMYPVLQAAD--ILIYKADTVPVGEDQVQHIELTREIARRFNHLFGETFPEPQALLNP 182
Query: 214 LGYAKRIHFMNPMVPGLAG-GKMSSSEEDSKIDLLDAPALVKKKLKKA--------FCEP 264
P VPG+ G KMS S + I LL+ + +K++ +P
Sbjct: 183 EA---------PRVPGIDGKAKMSKSL-GNTIGLLEPEESIWQKIQHLPDDPQRIRLSDP 232
Query: 265 GNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAKQELHPADL 324
G+ E + ++L S P + + ++E + K+ L D
Sbjct: 233 GDPERTILFTYL-----SYFAPKDLVEALKEEYRKAGVGTYV--------VKRIL--FDH 277
Query: 325 KAAAEFYINRLLEPIRKKFE 344
+ L PIR++ E
Sbjct: 278 -------LMEALRPIRERAE 290
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus
radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Length = 351
Score = 51.4 bits (124), Expect = 3e-07
Identities = 44/200 (22%), Positives = 64/200 (32%), Gaps = 64/200 (32%)
Query: 175 GLL-YPGLQALDEEYLKVDAQF--GGVDQR------------------KIFTLAEKYLPQ 213
G YP QA D A G DQ + + L +
Sbjct: 146 GFFVYPVSQAAD--IAAFGATLVPVGDDQLPMLEQTREIVRRFNALYAPVLAEPQAQLSR 203
Query: 214 LGYAKRIHFMNPMVPGLAG-GKMSSSEEDSKIDLLDAPALVKKKLKKAF--------CEP 264
+ P +PGL G KMS S + I L D+ V +K+ + +P
Sbjct: 204 V----------PRLPGLDGQAKMSKSL-GNAIALGDSADEVARKVMGMYTDPGHLRASDP 252
Query: 265 GNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAKQELHPADL 324
G VE N V +FL F + +D+ G L K+ L
Sbjct: 253 GRVEGNPVFTFLD--AFD--PDPARVQALKDQYRAGGLGDVK--------VKKHL----- 295
Query: 325 KAAAEFYINRLLEPIRKKFE 344
+ +N +L PIR +
Sbjct: 296 ---ID-VLNGVLAPIRTRRA 311
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET:
TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1
d.66.1.4 PDB: 1h3e_A*
Length = 432
Score = 48.6 bits (116), Expect = 3e-06
Identities = 61/243 (25%), Positives = 102/243 (41%), Gaps = 21/243 (8%)
Query: 12 MTSPSLSFDEKKQLITRNLQEFLGEDRLNVILKE-RDLKIYWGTATTGRP--HIAYFVPM 68
M + +E L+ R +E + E+ L LKE R L + G T P H+ + V +
Sbjct: 1 MAGTGHTPEEALALLKRGAEEIVPEEELLAKLKEGRPLTVKLGADPTR-PDLHLGHAVVL 59
Query: 69 SKIADFLRAGCEVTILFADLHAYL------DNMKAPWELLALRTKYYEESIKAMLESI-D 121
K+ F G +V ++ D + + P L T+ ++ A I
Sbjct: 60 RKMRQFQELGHKVVLIIGDFTGMIGDPSGRSKTRPP--LTLEETRENAKTYVAQAGKILR 117
Query: 122 VPISKLKFVKGTDYQLSKEYTLDVYRLSSVITEHDAKKAGAEVVKQ---VEHPL-LSGLL 177
+ +++ L +V RL+S++T A+ E K+ P+ L LL
Sbjct: 118 QEPHLFELRYNSEW-LEGLTFKEVVRLTSLMTV--AQMLEREDFKKRYEAGIPISLHELL 174
Query: 178 YPGLQALDEEYLKVDAQFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAGG-KMS 236
YP QA D ++ D + GG DQR + + G + ++ F+ P++ GL G KMS
Sbjct: 175 YPFAQAYDSVAIRADVEMGGTDQRFNLLVGREVQRAYGQSPQVCFLMPLLVGLDGREKMS 234
Query: 237 SSE 239
S
Sbjct: 235 KSL 237
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase,
structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma
pneumoniae}
Length = 348
Score = 45.3 bits (108), Expect = 3e-05
Identities = 49/220 (22%), Positives = 73/220 (33%), Gaps = 60/220 (27%)
Query: 159 KAGAEVVKQVEHPLLS-GLL-YPGLQALDEEYLKVDAQF--GGVDQR------------- 201
K + + GLL YP L A D L G DQ+
Sbjct: 114 KKAEQTRNPNGTLNIPTGLLTYPALMAGD--ILLYQPDIVPVGNDQKQHLELTRDLAQRI 171
Query: 202 -----KIFTLAEKYLPQLGYAKRIHFM---NPMVPGLAGGKMSSSEED--SKIDLLDAPA 251
L + + RI M +P KMS S ++ I L D
Sbjct: 172 QKKFKLKLRLPQFVQNKDT--NRI--MDLFDPTK------KMSKSSKNQNGVIYLDDPKE 221
Query: 252 LVKKKLKKAFCEPGNVEDNGVLSFLKHVVFSL-LKPG-ENLV----ITRDENNGGNLNFS 305
+V KK+++A D+ + F+ +PG N++ E +L
Sbjct: 222 VVVKKIRQA------TTDSF-----NKIRFASKTQPGVTNMLTILKALLKEPVNQSLTNQ 270
Query: 306 DYQSLEQVFAKQELHPADLKAA-AEFYINRLLEPIRKKFE 344
LE F+ + DLK A E +N L I++K E
Sbjct: 271 LGNDLEAYFSTKSY--LDLKNALTEATVNL-LVNIQRKRE 307
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid,
structural genomics, niaid, center for structural
genomics infectious diseases; 1.95A {Yersinia pestis}
Length = 346
Score = 41.4 bits (98), Expect = 5e-04
Identities = 47/211 (22%), Positives = 79/211 (37%), Gaps = 62/211 (29%)
Query: 175 GLL-YPGLQALDEEYLKVDAQF--GGVDQR------------------KIFTLAEKYLPQ 213
GL YP L A D L G DQ+ IF + E ++P+
Sbjct: 136 GLFDYPVLMAAD--ILLYQTNQVPVGEDQKQHLELSRDIASRFNNLYGDIFKIPEPFIPK 193
Query: 214 LGYAKRIHFM---NPMVPGLAGGKMSSSEED--SKIDLLDAPALVKKKLKKAFCEPGNVE 268
G R+ M +P KMS S+++ + I+LL+ P V KK+K+A +
Sbjct: 194 AG--ARV--MSLQDPTK------KMSKSDDNRNNVIELLEDPKSVVKKIKRA------MT 237
Query: 269 DNGVLSFLKHVVFSL-LKPG-ENLVITRDENNGGNLNFSDYQSLEQVFAKQELHPADLKA 326
D+ + + + + K G NL+ + + LE F Q LK
Sbjct: 238 DSDEPA---LIRYDVEKKAGVSNLL-----DILSGVTGQSIPELEAQFTGQMY--GHLKG 287
Query: 327 A-AEFYINRLLEPIRKKFESKELKDLTSKAY 356
A A+ L +++++ + +A
Sbjct: 288 AVADAVSGM-LSELQERY--RTY--REDEAL 313
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS,
induced FIT, ligase; HET: TYM; 1.72A {Geobacillus
stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A*
1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A*
1d2r_A 3u1v_A
Length = 328
Score = 40.6 bits (96), Expect = 9e-04
Identities = 52/208 (25%), Positives = 82/208 (39%), Gaps = 68/208 (32%)
Query: 175 GLL-YPGLQALDEEYLKVDAQF--GGVDQR------------------KIFTLAEKYLPQ 213
GLL YP L A D L + G DQ+ ++FT+ E +P+
Sbjct: 121 GLLTYPPLMAAD--ILLYNTDIVPVGEDQKQHIELTRDLAERFNKRYGELFTIPEARIPK 178
Query: 214 LGYAKRIHFM---NPMVPGLAGGKMSSSEED--SKIDLLDAPALVKKKLKKAFCEPGNVE 268
+G RI M +P KMS S+ + + I LLD ++KK+K A V
Sbjct: 179 VG--ARI--MSLVDPTK------KMSKSDPNPKAYITLLDDAKTIEKKIKSA------VT 222
Query: 269 DNGVLSFLKHVVFSL-LKPG-ENLVITRDENNGGNL--NFSDYQSLEQVFAK-QELHPAD 323
D + + KPG NL+ N+ S QS+E++ + +
Sbjct: 223 D-----SEGTIRYDKEAKPGISNLL---------NIYSTLSG-QSIEELERQYEGKGYGV 267
Query: 324 LKAA-AEFYINRLLEPIRKKFESKELKD 350
KA A+ I L PI++++ +
Sbjct: 268 FKADLAQVVIET-LRPIQERY--HHWME 292
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis,
translation, class I tRNA synth rossman fold, high
motif, KMSKS motif; 2.80A {Bacillus subtilis}
Length = 388
Score = 40.3 bits (95), Expect = 0.001
Identities = 58/213 (27%), Positives = 87/213 (40%), Gaps = 70/213 (32%)
Query: 175 GLL-YPGLQALDEEYLKVDAQF--GGVDQR------------------KIFTLAEKYLPQ 213
GLL YP L A D L G DQ+ IFT+ E +P+
Sbjct: 155 GLLTYPPLMAAD--ILLYGTDLVPPGEDQKQHLELTRNLAERFNKKYNDIFTIPEVKIPK 212
Query: 214 LGYAKRIHFM---NPMVPGLAGGKMSSSEED--SKIDLLDAPALVKKKLKKAFCEPGNVE 268
+G RI M +P+ KMS S+ + + I LLD P ++KK+K A V
Sbjct: 213 VG--ARI--MSLNDPLK------KMSKSDPNQKAYITLLDEPKQLEKKIKSA------VT 256
Query: 269 DNGVLSFLKHVVFSL-LKPG-ENLVITRDENNGGNL--NFSDYQSLEQVFAK-QELHPAD 323
D V F KPG NL+ + + ++E++ AK + +
Sbjct: 257 D-----SEGIVKFDKENKPGVSNLL---------TIYSILGN-TTIEELEAKYEGKGYGE 301
Query: 324 LKAA-AEFYINRLLEPIRKKF----ESKELKDL 351
K AE +N L+PI+ ++ ES+EL +
Sbjct: 302 FKGDLAEVVVNA-LKPIQDRYYELIESEELDRI 333
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for
structural genomics of infec diseases, csgid, rossmann
fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Length = 341
Score = 39.9 bits (94), Expect = 0.002
Identities = 34/165 (20%), Positives = 65/165 (39%), Gaps = 38/165 (23%)
Query: 200 QRKIFTLAEKYLPQLGYAKRIHFM---NPMVPGLAGGKMSSSEED--SKIDLLDAPALVK 254
++ IFT+ E Y+P + R+ M + KMS S+++ + I LL+ P +
Sbjct: 174 EQPIFTIPEPYIPTVN--ARV--MSLQDATK------KMSKSDDNRKNVITLLEDPKSII 223
Query: 255 KKLKKAFCEPGNVEDNGVLSFLKHVVFSL-LKPG-ENLVITRDENNGGNLNFSDYQSLEQ 312
KK+ KA D + + + K G NL+ + +E
Sbjct: 224 KKINKA------QTDAETPP---RIAYDVENKAGIANLM-----GLYSAATGKTFAEIEA 269
Query: 313 VFAKQELHPADLKAA-AEFYINRLLEPIRKKFESKELKDLTSKAY 356
+A E++ K E + LEP++ ++ + + + Y
Sbjct: 270 QYAGVEMY-GPFKKDVGEAVVAM-LEPVQAEY--QRI--RNDREY 308
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.7 bits (81), Expect = 0.012
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 13/41 (31%)
Query: 344 ESKELKDLTS--KAYPPKKPVVESDIIAPHRLDIRVGKIVE 382
E + LK L + K Y +S AP L I+ +E
Sbjct: 18 EKQALKKLQASLKLYAD-----DS---AP-ALAIKA--TME 47
Score = 29.1 bits (64), Expect = 2.0
Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Query: 451 EEEGNKKVEP---LFVPPSSKA-GDKIVVE 476
E++ KK++ L+ S+ A K +E
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATME 47
Score = 29.1 bits (64), Expect = 2.4
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 11/30 (36%)
Query: 234 KMSSS----EEDSKIDLLDAPAL-VKKKLK 258
K+ +S +DS APAL +K ++
Sbjct: 24 KLQASLKLYADDS------APALAIKATME 47
Score = 28.8 bits (63), Expect = 2.8
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 19/43 (44%)
Query: 21 EKKQLITRNLQEFLGEDRLNVILKERDLKIYWGTATTGRPHIA 63
EK+ L + L + LK+Y A P +A
Sbjct: 18 EKQAL--KKL--------------QASLKLY---ADDSAPALA 41
Score = 27.6 bits (60), Expect = 7.5
Identities = 8/30 (26%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 308 QSLEQVFAKQELHPADLKAAAEFYINRLLE 337
Q+L+++ A +L+ D +A I +E
Sbjct: 20 QALKKLQASLKLYADD--SAPALAIKATME 47
>3lnp_A Amidohydrolase family protein OLEI01672_1_465; TIM barrel,
beta-fold, structural genomics, PSI-2, protein structure
initiative; HET: MSE; 2.10A {Oleispira antarctica}
Length = 468
Score = 31.8 bits (73), Expect = 0.68
Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 357 PPKKPVVESDIIAPHRLDIRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVN 413
+ S+I+ H L I+ G I+ + + E +DLG+ + ++ G VN
Sbjct: 37 NTTDHNLVSNILIDHCLLIKDGIILAIEPQSSCQIPATETLDLGQ---QVLMPGWVN 90
>2qs8_A XAA-Pro dipeptidase; amidohydrolase, TIM barrel, protein structure
initiative, PSI-2, NYSGXRC, structural genomics; 2.33A
{Alteromonas macleodii} SCOP: b.92.1.9 c.1.9.18
Length = 418
Score = 30.4 bits (69), Expect = 1.5
Identities = 8/52 (15%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Query: 362 VVESDIIAPHRLDIRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVN 413
+ + + I I ++ + + + + IDL + T++ GL++
Sbjct: 19 GKSDQVQSRISIVIDGNIISDIKKGFISSNDFEDYIDLRD---HTVLPGLMD 67
>3gnh_A L-lysine, L-arginine carboxypeptidase CC2672; N-methyl phosphonate
derivative of L- arginine, hydrolase; HET: KCX M3R;
1.70A {Caulobacter crescentus CB15} PDB: 3mtw_A*
Length = 403
Score = 30.4 bits (69), Expect = 1.6
Identities = 10/52 (19%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
Query: 362 VVESDIIAPHRLDIRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVN 413
V + + + G+I + + DA +DL T++ GL++
Sbjct: 14 VASGKYVDNPLVIVTDGRITSIGKKGDAVPAGATAVDLPG---VTLLPGLID 62
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer,
oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces
cerevisiae} SCOP: c.2.1.11 e.37.1.1
Length = 274
Score = 30.0 bits (67), Expect = 2.0
Identities = 16/113 (14%), Positives = 44/113 (38%), Gaps = 5/113 (4%)
Query: 69 SKIADFLRAGCEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPISKLK 128
+++ + GC++T++ DLH + + + Y E++ + + + D +++
Sbjct: 27 TRLYKLMPTGCKLTLVSPDLHKSIIPKFGKFIQNKDQPDYREDAKRFINPNWDPTKNEIY 86
Query: 129 FVKGTDYQ---LSKEYTLDVYRLSSVITEHDAKKAGAEVVKQVEHPLLSGLLY 178
+D++ L E D + + ++T A + + L
Sbjct: 87 EYIRSDFKDEYLDLENENDAWYI--IMTCIPDHPESARIYHLCKERFGKQQLV 137
>2vhl_A N-acetylglucosamine-6-phosphate deacetylase; N-
acetyleglucosamine-6-phosphate, carbohydrate metabolism,
hydrolase; HET: GLP PGE; 2.05A {Bacillus subtilis}
Length = 396
Score = 29.5 bits (67), Expect = 2.7
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Query: 362 VVESDIIAPHRLDIRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLV 412
V E+++I + I GKI VS E E + ++ G++
Sbjct: 13 VTENEVIKNGYVGINDGKISTVSTERPKEPYSKEIQAPAD---SVLLPGMI 60
>2imr_A Hypothetical protein DR_0824; zinc, NYSGXRC, PSI2, structural
genomics, protein structure initiative; 1.78A
{Deinococcus radiodurans} SCOP: b.92.1.11 c.1.9.16
Length = 420
Score = 29.7 bits (67), Expect = 2.9
Identities = 5/52 (9%), Positives = 11/52 (21%), Gaps = 4/52 (7%)
Query: 363 VESDIIAPHRLDIRVGKIVEVSRHPDAEALYVEK-IDLGEENPRTIVSGLVN 413
+P + + + + Y + I VN
Sbjct: 49 GMGGAQSPGGVVVVGETVAAAGHPDELRRQYPHAAEERAG---AVIAPPPVN 97
>2r8c_A Putative amidohydrolase; unknown source, sargasso SEA, structural
genomics, protein structure initiative, PSI; 2.31A
{Unidentified} SCOP: b.92.1.9 c.1.9.18 PDB: 3mkv_A*
Length = 426
Score = 29.2 bits (66), Expect = 4.1
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 362 VVESDIIAPHRLDIRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVN 413
D++ + I G I EVS P + ID+ +TI+ GL++
Sbjct: 16 PDHPDLLQGFEILIEDGFIREVSDKPIKSS-NAHVIDVKG---KTIMPGLID 63
>3h4u_A Amidohydrolase; signature of Zn ligands, structural genomics,
NYSGXRC, target 9236E, PSI-2, protein structure
initiative; 2.20A {Unidentified} PDB: 3hpa_A
Length = 479
Score = 29.1 bits (66), Expect = 4.4
Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 3/50 (6%)
Query: 364 ESDIIAPHRLDIRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVN 413
+ L I +IV V + E +DL ++ GLVN
Sbjct: 45 TRRELRDAGLYIEDNRIVAVGPSAELPETADEVLDLRG---HLVIPGLVN 91
>1ywf_A Phosphotyrosine protein phosphatase PTPB; four stranded parallel
beta sheet with flanking helices, structural genomics,
PSI; 1.71A {Mycobacterium tuberculosis} SCOP: c.45.1.5
PDB: 2oz5_A*
Length = 296
Score = 28.4 bits (62), Expect = 5.5
Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 10/83 (12%)
Query: 134 DYQLSKEYTLDVY-RLSSVITEHDAKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVD 192
DY S + + R+S +I + + EVV + L G+L + L +D
Sbjct: 208 DYLRSNDSVPQLRARISEMIQQRFDTELAPEVVTFTKARLSDGVLGVRAEYLAAARQTID 267
Query: 193 AQFGGVDQRKIFTLAEKYLPQLG 215
+G + YL G
Sbjct: 268 ETYGSLGG---------YLRDAG 281
>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain
enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}
Length = 301
Score = 27.9 bits (63), Expect = 8.9
Identities = 8/38 (21%), Positives = 16/38 (42%), Gaps = 5/38 (13%)
Query: 420 MANRLV-----VVLCNLKPAKMRGIESAGMVLCASVEE 452
MA L+ V +L A + + + G C + ++
Sbjct: 19 MAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQK 56
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.135 0.386
Gapped
Lambda K H
0.267 0.0781 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,506,334
Number of extensions: 540823
Number of successful extensions: 1569
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1428
Number of HSP's successfully gapped: 74
Length of query: 549
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 451
Effective length of database: 3,965,535
Effective search space: 1788456285
Effective search space used: 1788456285
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (26.8 bits)