RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5948
(549 letters)
>d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 339
Score = 245 bits (625), Expect = 3e-77
Identities = 258/342 (75%), Positives = 289/342 (84%), Gaps = 3/342 (0%)
Query: 16 SLSFDEKKQLITRNLQEFLGEDRLNVILKERDLKIYWGTATTGRPHIAYFVPMSKIADFL 75
+ S +EK LITRNLQE LGE++L ILKER+LKIYWGTATTG+PH+AYFVPMSKIADFL
Sbjct: 1 APSPEEKLHLITRNLQEVLGEEKLKEILKERELKIYWGTATTGKPHVAYFVPMSKIADFL 60
Query: 76 RAGCEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPISKLKFVKGTDY 135
+AGCEVTILFADLHAYLDNMKAPWELL LR YYE IKAMLESI VP+ KLKF+KGTDY
Sbjct: 61 KAGCEVTILFADLHAYLDNMKAPWELLELRVSYYENVIKAMLESIGVPLEKLKFIKGTDY 120
Query: 136 QLSKEYTLDVYRLSSVITEHDAKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQF 195
QLSKEYTLDVYRLSSV+T+HD+KKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQF
Sbjct: 121 QLSKEYTLDVYRLSSVVTQHDSKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQF 180
Query: 196 GGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAGGKMSSSEEDSKIDLLDAPALVKK 255
GG+DQRKIFT AEKYLP LGY+KR+H MNPMVPGL G KMSSSEE+SKIDLLD VKK
Sbjct: 181 GGIDQRKIFTFAEKYLPALGYSKRVHLMNPMVPGLTGSKMSSSEEESKIDLLDRKEDVKK 240
Query: 256 KLKKAFCEPGNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFA 315
KLKKAFCEPGNVE+NGVLSF+KHV+F L VI RDE GGN ++ Y LE+ FA
Sbjct: 241 KLKKAFCEPGNVENNGVLSFIKHVLFPLK---SEFVILRDEKWGGNKTYTAYVDLEKDFA 297
Query: 316 KQELHPADLKAAAEFYINRLLEPIRKKFESKELKDLTSKAYP 357
+ +HP DLK + E +N+LL+PIR+KF + LK L S AYP
Sbjct: 298 AEVVHPGDLKNSVEVALNKLLDPIREKFNTPALKKLASAAYP 339
>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 306
Score = 157 bits (396), Expect = 3e-44
Identities = 106/322 (32%), Positives = 175/322 (54%), Gaps = 18/322 (5%)
Query: 21 EKKQLITRNLQEFLGEDRLNVILKERDLKIYWGTATTGRPHIAYFVPMSKIADFLRAGCE 80
++ ++I RN E + E+ L +LK+ + Y G +G+ H+ +++ + K+ D AG +
Sbjct: 2 DEFEMIKRNTSEIISEEELREVLKKDEKSAYIGFEPSGKIHLGHYLQIKKMIDLQNAGFD 61
Query: 81 VTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPISKLKFVKGTDYQLSKE 140
+ IL ADLHAYL+ E+ + + K K+V G+++QL K+
Sbjct: 62 IIILLADLHAYLNQKGELDEIRKIGDYNKKVFE--------AMGLKAKYVYGSEFQLDKD 113
Query: 141 YTLDVYRLSSVITEHDAKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQFGGVDQ 200
YTL+VYRL+ T A+++ + ++ E+P ++ ++YP +Q D YL VD GG++Q
Sbjct: 114 YTLNVYRLALKTTLKRARRSMELIAREDENPKVAEVIYPIMQVNDIHYLGVDVAVGGMEQ 173
Query: 201 RKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAGGKMSSSEEDSKIDLLDAPALVKKKLKKA 260
RKI LA + K + NP++ GL G SS + + I + D+P ++ K+KKA
Sbjct: 174 RKIHMLAREL----LPKKVVCIHNPVLTGLDGEGKMSSSKGNFIAVDDSPEEIRAKIKKA 229
Query: 261 FCEPGNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAKQELH 320
+C G VE N ++ K+ + L I R E GG+L + Y+ LE +F +ELH
Sbjct: 230 YCPAGVVEGNPIMEIAKYFLE------YPLTIKRPEKFGGDLTVNSYEELESLFKNKELH 283
Query: 321 PADLKAAAEFYINRLLEPIRKK 342
P DLK A + ++LEPIRK+
Sbjct: 284 PMDLKNAVAEELIKILEPIRKR 305
>d1ntga_ b.40.4.4 (A:) C-terminal domain of metazoan tyrosyl-tRNA
synthetase, TyrRS {Human (Homo sapiens) [TaxId: 9606]}
Length = 171
Score = 142 bits (360), Expect = 1e-40
Identities = 91/146 (62%), Positives = 112/146 (76%), Gaps = 1/146 (0%)
Query: 368 IAPHRLDIRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMANRLVVV 427
+ P RLDIRVGKI+ V +HPDA++LYVEKID+GE PRT+VSGLV +V + ++ +RLVVV
Sbjct: 4 VIPSRLDIRVGKIITVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLVVV 63
Query: 428 LCNLKPAKMRGIESAGMVLCASVEEEGNKKVEPLFVPPSSKAGDKIVVEGYETGAPDEIL 487
LCNLKP KMRG+ES GM+LCAS E N++VEPL P S G+ + V+GYE G PDE L
Sbjct: 64 LCNLKPQKMRGVESQGMLLCAS-IEGINRQVEPLDPPAGSAPGEHVFVKGYEKGQPDEEL 122
Query: 488 NPKKKVWEKLQVDLKTSSEGIAQWQG 513
PKKKV+EKLQ D K S E IAQW+
Sbjct: 123 KPKKKVFEKLQADFKISEECIAQWKQ 148
>d1fl0a_ b.40.4.4 (A:) EMAP II {Human (Homo sapiens) [TaxId: 9606]}
Length = 164
Score = 130 bits (328), Expect = 3e-36
Identities = 75/142 (52%), Positives = 103/142 (72%), Gaps = 5/142 (3%)
Query: 372 RLDIRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMANRLVVVLCNL 431
RLD+R+G I+ +HPDA++LYVE++D+GE PRT+VSGLVN+V M NR+V++LCNL
Sbjct: 5 RLDLRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVILLCNL 64
Query: 432 KPAKMRGIESAGMVLCASVEEEGNKKVEPLFVPPSSKAGDKIVVEGYETGAPDEILNPKK 491
KPAKMRG+ S MV+CAS E K+E L P S GD+I + + G PD+ LNPKK
Sbjct: 65 KPAKMRGVLSQAMVMCASSPE----KIEILAPPNGSVPGDRITFDAFP-GEPDKELNPKK 119
Query: 492 KVWEKLQVDLKTSSEGIAQWQG 513
K+WE++Q DL T+ E +A ++G
Sbjct: 120 KIWEQIQPDLHTNDECVATYKG 141
>d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 386
Score = 130 bits (327), Expect = 8e-34
Identities = 56/347 (16%), Positives = 109/347 (31%), Gaps = 46/347 (13%)
Query: 33 FLGEDRLNVIL----KERDLKIYWGTATTGRP-HIAYFVPMSKIADFLRA-GCEVTILFA 86
F +N +L ++ +Y G + H+ + +P + I
Sbjct: 56 FFSHRDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMT 115
Query: 87 DLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPISKLKFVKGTDYQLSKEYTLDVY 146
D YL + + ++ I + I F +S + +V
Sbjct: 116 DDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFI----FSDLDYMGMSSGFYKNVV 171
Query: 147 RLSSVITEHDAKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQFG---------- 196
++ +T + K + + + +P +QA F
Sbjct: 172 KIQKHVTFNQVKGI----FGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIP 227
Query: 197 -GVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAG--GKMSSSEEDSKIDLLDAPALV 253
+DQ F + P++GY K + P L G KMS+S+ +S I L D +
Sbjct: 228 CAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQI 287
Query: 254 KKKLKKAFCEPGN--VEDNGVLS--FLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQS 309
K K+ K G +E++ V F L + +
Sbjct: 288 KTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLT-------------FFLEDDDKLEQ 334
Query: 310 LEQVFAKQELHPADLKAAAEFYINRLLEPIRKKFESKELKDLTSKAY 356
+ + + + +LK A + L+ + + KE+ D K +
Sbjct: 335 IRKDYTSGAMLTGELKKALIEVLQPLIAEHQARR--KEVTDEIVKEF 379
>d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus
thermophilus [TaxId: 274]}
Length = 343
Score = 99.7 bits (247), Expect = 2e-23
Identities = 62/341 (18%), Positives = 125/341 (36%), Gaps = 36/341 (10%)
Query: 20 DEKKQLITRNLQEFLGEDRL-NVILKERDLKIYWGTATTGRP-HIAYFVPMSKIADFLRA 77
+E L+ R +E + E+ L + + R L + G T H+ + V + K+ F
Sbjct: 5 EEALALLKRGAEEIVPEEELLAKLKEGRPLTVKLGADPTRPDLHLGHAVVLRKMRQFQEL 64
Query: 78 GCEVTILFADLHAYLDNMKAPWELLALR-----TKYYEESIKAMLESIDVPISKLKFVKG 132
G +V ++ D + + + + + + + + +
Sbjct: 65 GHKVVLIIGDFTGMIGDPSGRSKTRPPLTLEETRENAKTYVAQAGKILRQEPHLFELRYN 124
Query: 133 TDYQLSKEYTLDVYRLSSVITEHDA-KKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKV 191
+++ + V S + ++ + + L LLYP QA D ++
Sbjct: 125 SEWLEGLTFKEVVRLTSLMTVAQMLEREDFKKRYEAGIPISLHELLYPFAQAYDSVAIRA 184
Query: 192 DAQFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAGGKMSSSEEDSKIDLLDAPA 251
D + GG DQR + + G + ++ F+ P++ GL G + S D+ I L + P
Sbjct: 185 DVEMGGTDQRFNLLVGREVQRAYGQSPQVCFLMPLLVGLDGREKMSKSLDNYIGLTEPPE 244
Query: 252 LVKKKLKKAFCEPGNVEDNGVLSFLKHVVF-------SLLKPGENLV-------ITR--- 294
+ KKL V D + S+ + + +LLK G +T
Sbjct: 245 AMFKKLM-------RVPDPLLPSYFRLLTDLEEEEIEALLKAGPVPAHRVLARLLTAAYA 297
Query: 295 DENNGGNLNFSDYQSLEQVFA----KQELHPADLKAAAEFY 331
++ + Y+SL + +E P +++ A Y
Sbjct: 298 LPQIPPRIDRAFYESLGYAWEAFGRDKEAGPEEVRRAEARY 338
>d1pxfa_ b.40.4.4 (A:) Structure-specific tRNA-binding protein
TRBP111 {Escherichia coli [TaxId: 562]}
Length = 111
Score = 91.5 bits (227), Expect = 6e-23
Identities = 44/103 (42%), Positives = 63/103 (61%), Gaps = 3/103 (2%)
Query: 372 RLDIRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMANRLVVVLCNL 431
RL++RVGKIVEV RH +A+ LY+ ++D+G+ V+ LV Y E ++ + VVVLCNL
Sbjct: 11 RLEMRVGKIVEVKRHENADKLYIVQVDVGQ-KTLQTVTSLVPYYSEEELMGKTVVVLCNL 69
Query: 432 KPAKMRGIESAGMVLCASVEEEGNKKVEPLFVPPSSKAGDKIV 474
+ AKMRG S M+LCA E + + L AG ++V
Sbjct: 70 QKAKMRGETSECMLLCA--ETDDGSESVLLTPERMMPAGVRVV 110
>d1mkha_ b.40.4.4 (A:) C-terminal domain of methionyl-tRNA
synthetase, MetRS-CD {Archaeon Pyrococcus abyssi [TaxId:
29292]}
Length = 107
Score = 83.4 bits (206), Expect = 3e-20
Identities = 48/102 (47%), Positives = 67/102 (65%), Gaps = 5/102 (4%)
Query: 372 RLDIRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMANRLVVVLCNL 431
+LD+RVGKI+EV HP+A+ LYV K+DLG+ RT+V+GL Y K ++ NR VVV+ NL
Sbjct: 10 KLDLRVGKIIEVKDHPNADKLYVVKVDLGD-EVRTLVAGLKKYYKPEELLNRYVVVVANL 68
Query: 432 KPAKMRGIESAGMVLCASVEEEGNKKVEPLFVPPSSKAGDKI 473
+P K+RGI S GM+L A + ++V L K G K+
Sbjct: 69 EPKKLRGIGSQGMLLAA----DDGERVALLMPDKEVKLGAKV 106
>d1pyba_ b.40.4.4 (A:) Structure-specific tRNA-binding protein
TRBP111 {Aquifex aeolicus [TaxId: 63363]}
Length = 107
Score = 81.2 bits (200), Expect = 2e-19
Identities = 33/102 (32%), Positives = 55/102 (53%), Gaps = 5/102 (4%)
Query: 372 RLDIRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMANRLVVVLCNL 431
++D+RV K++ R +E L + LG+ RT+V+G+ Y ++ + +V++ NL
Sbjct: 10 KVDLRVAKVLSAERVEGSEKLLKLTLSLGD-EERTVVAGIAKYYTPEELVGKKIVIVANL 68
Query: 432 KPAKMRGIESAGMVLCASVEEEGNKKVEPLFVPPSSKAGDKI 473
KP K+ GIES GM+L AS E + + K G K+
Sbjct: 69 KPRKIFGIESQGMILAASDGE----NLSVIVPDRDVKEGAKL 106
>d1i6la_ c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS)
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 326
Score = 85.6 bits (211), Expect = 8e-19
Identities = 45/315 (14%), Positives = 91/315 (28%), Gaps = 48/315 (15%)
Query: 49 KIYWGTATTGRPHIAYFVPMSKIADFLRAGCEVTILFADLHAYLDNMKAPWELLALRTKY 108
I+ G +G I ++ + L+ D HA + + P EL +
Sbjct: 3 TIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHA-ITVWQDPHEL-----RQ 56
Query: 109 YEESIKAMLESIDVPISKLKFVKGTDYQLSKEYTLDVYRLSSVITEHDAKKAGAEVVKQV 168
+ A+ ++ + ++ ++ + + + + + + +
Sbjct: 57 NIRRLAALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQFKEKSAGKE 116
Query: 169 EHPLLSGLLYPGLQALDEEYLKVDAQFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVP 228
L YP L A D D G DQ++ L + F P
Sbjct: 117 AVS-AGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRYGELFTIPEAR 175
Query: 229 -------------GLAGGKMSSSEEDSKIDLLDAPALVKKKLKKAFCEPGNV------ED 269
S + I LLD ++KK+K A +
Sbjct: 176 IPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKSAVTDSEGTIRYDKEAK 235
Query: 270 NGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAKQELHPADLKAAAE 329
G+ + L ++S L G+++ + G KA
Sbjct: 236 PGISNLLN--IYSTLS-GQSIEELERQYEGKGY-------------------GVFKADLA 273
Query: 330 FYINRLLEPIRKKFE 344
+ L PI++++
Sbjct: 274 QVVIETLRPIQERYH 288
>d1gd7a_ b.40.4.4 (A:) TRBP111 homolog CsaA {Thermus thermophilus
[TaxId: 274]}
Length = 109
Score = 76.6 bits (188), Expect = 9e-18
Identities = 25/103 (24%), Positives = 41/103 (39%), Gaps = 4/103 (3%)
Query: 372 RLDIRVGKIVEVSRHPDAEALYVEKI-DLGEENPRTIVSGLVNYVKEGDMANRLVVVLCN 430
LD+RVG+++ H A + DLG + + + + D+ RLVV N
Sbjct: 9 ILDLRVGRVLRAEPHEKARKPSYKLWVDLGPLGVKQSSAQITELYRPEDLVGRLVVCAVN 68
Query: 431 LKPAKMRGIESAGMVLCASVEEEGNKKVEPLFVPPSSKAGDKI 473
L ++ G S +VL + +V L G K+
Sbjct: 69 LGAKRVAGFLSEVLVLGVP---DEAGRVVLLAPDREVPLGGKV 108
>d2ts1a_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Bacillus
stearothermophilus, nca 1503 [TaxId: 1422]}
Length = 319
Score = 62.0 bits (150), Expect = 4e-11
Identities = 48/294 (16%), Positives = 86/294 (29%), Gaps = 19/294 (6%)
Query: 23 KQLITRNL-QEFLGEDRLNVILKERDLKIYWGTATTGRP-HIAYFVPMSKIADFLRAGCE 80
+L R L + ED L +L E + +Y G T HI + + + F +AG
Sbjct: 5 AELQWRGLVNQTTDEDGLRKLLNEERVTLYCGFDPTADSLHIGHLATILTMRRFQQAGHR 64
Query: 81 VTILFADLHAYLDNMKAPWELLALRTKY-YEESIKAM------LESIDVPISKLKFVKGT 133
L + + L K E + + + K
Sbjct: 65 PIALVGGATGLIGDPSGKKSERTLNAKETVEAWSARIKEQLGRFLDFEADGNPAKIKNNY 124
Query: 134 DYQLSKEYTLDVYRLSSVITEHDAKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYL---- 189
D+ + + + + + + + + Y LQA D L
Sbjct: 125 DWIGPLDVITFLRDVGKHFSVNYMMAKESVQSRIETGISFTEFSYMMLQAYDFLRLYETE 184
Query: 190 KVDAQFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAGGKMSSSEEDSKIDLLDA 249
Q GG DQ T + + + R + + A G E I L
Sbjct: 185 GCRLQIGGSDQWGNITAGLELIRKTKGEARAFGLTIPLVTKADGTKFGKTESGTIWLDKE 244
Query: 250 PALVKKKLKKAFCEPGNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLN 303
+ + N +D V+ +LK+ F+ L E + ++
Sbjct: 245 KTSPYEFYQFWI----NTDDRDVIRYLKY--FTFLSKEEIEALEQELREAPEKR 292
>d1jila_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS)
{Staphylococcus aureus [TaxId: 1280]}
Length = 323
Score = 60.5 bits (146), Expect = 1e-10
Identities = 44/296 (14%), Positives = 91/296 (30%), Gaps = 24/296 (8%)
Query: 23 KQLITRNL-QEFLGEDRLNVILKERDLKIYWGTATTGRP-HIAYFVPMSKIADFLRAGCE 80
+ L R L + E + +L + + +Y G T HI + +P + F G
Sbjct: 6 EDLKWRGLIYQQTDEQGIEDLLNKEQVTLYCGADPTADSLHIGHLLPFLTLRRFQEHGHR 65
Query: 81 VTILFADLHAYLDN--------MKAPWELLALRTKYYEESIKAMLESIDVPISKLKFVKG 132
+L + + + E + + + + + + +
Sbjct: 66 PIVLIGGGTGMIGDPSGKSEERVLQTEEQVDKNIEGISKQMHNI---FEFGTDHGAVLVN 122
Query: 133 TDYQLSKEYTLDVYRL-SSVITEHDAKKAGAEVVKQVEHPLLSGLLYPGLQALD----EE 187
L + + R + + + + + Y LQA+D
Sbjct: 123 NRDWLGQISLISFLRDYGKHVGVNYMLGKDSIQSRLEHGISYTEFTYTILQAIDFGHLNR 182
Query: 188 YLKVDAQFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAGGKMSSSEEDSKIDLL 247
L Q GG DQ T + + ++ + + + + GK E + L
Sbjct: 183 ELNCKIQVGGSDQWGNITSGIELMRRMYGQTDAYGLTIPLVTKSDGKKFGKSESGAVWLD 242
Query: 248 DAPALVKKKLKKAFCEPGNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLN 303
+ + N D V+ FLK+ F+ L E + + +N +L
Sbjct: 243 AEKTSPYEFYQFWI----NQSDEDVIKFLKY--FTFLGKEEIDRLEQSKNEAPHLR 292
>d1jjcb3 b.40.4.4 (B:39-151) Domain B2 of PheRS-beta, PheT {Thermus
thermophilus [TaxId: 274]}
Length = 113
Score = 43.8 bits (103), Expect = 4e-06
Identities = 20/99 (20%), Positives = 33/99 (33%), Gaps = 21/99 (21%)
Query: 356 YPPKKPVVESDIIAPHRLDIRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYV 415
+P + VV +++E P L +D G +VSG N
Sbjct: 1 FPIPRGVV-------------FARVLEAHPIPGTR-LKRLVLDAGRT--VEVVSGAENAR 44
Query: 416 KEGDMA-----NRLVVVLCNLKPAKMRGIESAGMVLCAS 449
K +A L + + ++G+ S GM L
Sbjct: 45 KGIGVALALPGTELPGLGQKVGERVIQGVRSFGMALSPR 83
>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional
dehydrogenase/ferrochelatase Met8p, N-terminal domain
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 150
Score = 29.7 bits (66), Expect = 0.42
Identities = 14/95 (14%), Positives = 39/95 (41%), Gaps = 3/95 (3%)
Query: 66 VPMSKIADFLRAGCEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPIS 125
V ++++ + GC++T++ DLH + + + Y E++ + + + D +
Sbjct: 24 VGLTRLYKLMPTGCKLTLVSPDLHKSIIPKFGKFIQNKDQPDYREDAKRFINPNWDPTKN 83
Query: 126 KLKFVKGTDYQ---LSKEYTLDVYRLSSVITEHDA 157
++ +D++ L E D + +
Sbjct: 84 EIYEYIRSDFKDEYLDLENENDAWYIIMTCIPDHP 118
>d1ywfa1 c.45.1.5 (A:4-275) Phosphotyrosine protein phosphatase PtpB
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 272
Score = 29.0 bits (64), Expect = 1.4
Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 10/83 (12%)
Query: 134 DYQLSKEYTLDVY-RLSSVITEHDAKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVD 192
DY S + + R+S +I + + EVV + L G+L + L +D
Sbjct: 185 DYLRSNDSVPQLRARISEMIQQRFDTELAPEVVTFTKARLSDGVLGVRAEYLAAARQTID 244
Query: 193 AQFGGVDQRKIFTLAEKYLPQLG 215
+G + YL G
Sbjct: 245 ETYGSL---------GGYLRDAG 258
>d1azsb_ d.58.29.1 (B:) Adenylyl cyclase IIC1, domain C2a {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 199
Score = 28.3 bits (62), Expect = 1.7
Identities = 10/57 (17%), Positives = 21/57 (36%), Gaps = 6/57 (10%)
Query: 80 EVTILFADLHAY------LDNMKAPWELLALRTKYYEESIKAMLESIDVPISKLKFV 130
V ++FA + + D K E L L + + + + + K+K +
Sbjct: 6 CVCVMFASIPDFKEFYTESDVNKEGLECLRLLNEIIADFDDLLSKPKFSGVEKIKTI 62
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 28.2 bits (62), Expect = 3.0
Identities = 23/179 (12%), Positives = 59/179 (32%), Gaps = 19/179 (10%)
Query: 256 KLKKAFCEPGNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFA 315
+L + + P + G L+ + + + + N + F + +
Sbjct: 255 RLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS 314
Query: 316 KQELHPADLKAAAEFYINRLLEPIRKKFESKELKDLTSKAYPPKKPVVESDIIAPHRLDI 375
+ L +F +R E + + + L S + + + H +
Sbjct: 315 EPNLLVRACNQLGQFLQHR--ETNLRYLALESMCTLASSEFSHE-------AVKTHIETV 365
Query: 376 RVGKIVEVSRHPDAEALYVEKIDL-----GEENPRTIVSGLVNYVKEGDMANRLVVVLC 429
+ + ++ +DL N + IV+ +++Y++ D + R +VL
Sbjct: 366 -----INALKTERDVSVRQRAVDLLYAMCDRSNAQQIVAEMLSYLETADYSIREEIVLK 419
>d2gkea2 d.21.1.1 (A:131-274) Diaminopimelate epimerase
{Haemophilus influenzae [TaxId: 727]}
Length = 144
Score = 27.0 bits (59), Expect = 3.7
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 40 NVILKERDLKIYWGTATTGRPHIAYFVPMSKIADFLRAGCEV 81
N IL+ + G + G PH V + A+ + G +
Sbjct: 8 NYILRTDIQTVLCGAVSMGNPHCVVQVDDIQTANVEQLGPLL 49
>d1fm0e_ d.41.5.1 (E:) Molybdopterin synthase subunit MoaE
{Escherichia coli [TaxId: 562]}
Length = 149
Score = 26.5 bits (58), Expect = 5.2
Identities = 12/81 (14%), Positives = 26/81 (32%), Gaps = 13/81 (16%)
Query: 292 ITRDENNGGNLNFSDYQSLEQVFAKQELHPADLKAAAEFYINRLLEPIRKKFESKELKDL 351
R+ N G ++N + + ++ L +A + + R+ R
Sbjct: 36 KVRNHNLGDSVNALTLEHYPGM-TEKALAEIVDEARNRWPLGRVTVIHRIGE-------- 86
Query: 352 TSKAYPPKKPVVESDIIAPHR 372
P +V + + HR
Sbjct: 87 ----LWPGDEIVFVGVTSAHR 103
>d2gmga1 a.4.5.82 (A:1-105) Hypothetical protein PF0610 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 105
Score = 25.6 bits (56), Expect = 6.5
Identities = 11/50 (22%), Positives = 18/50 (36%)
Query: 244 IDLLDAPALVKKKLKKAFCEPGNVEDNGVLSFLKHVVFSLLKPGENLVIT 293
I+LL +L + G +L LK + + G L+I
Sbjct: 17 IELLLEGDYSPSELARILDMRGKGSKKVILEDLKVISKIAKREGMVLLIK 66
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.135 0.386
Gapped
Lambda K H
0.267 0.0676 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,045,008
Number of extensions: 100795
Number of successful extensions: 310
Number of sequences better than 10.0: 1
Number of HSP's gapped: 288
Number of HSP's successfully gapped: 22
Length of query: 549
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 459
Effective length of database: 1,171,896
Effective search space: 537900264
Effective search space used: 537900264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.1 bits)