BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5950
(511 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PFN|A Chain A, Crystal Structure Of Human Nad Kinase
pdb|3PFN|B Chain B, Crystal Structure Of Human Nad Kinase
pdb|3PFN|C Chain C, Crystal Structure Of Human Nad Kinase
pdb|3PFN|D Chain D, Crystal Structure Of Human Nad Kinase
Length = 365
Score = 427 bits (1099), Expect = e-120, Method: Compositional matrix adjust.
Identities = 223/359 (62%), Positives = 275/359 (76%), Gaps = 20/359 (5%)
Query: 135 PSPIQQFGPCGRIMKNSAMVMTIQDPASQRLTWYKPPLTVLVIKKVRDVSVLQPFVKLVK 194
P P+ FGP +++N + IQDPASQRLTW K P +VLVIKK RD S+LQPF +L
Sbjct: 2 PCPVTTFGPKACVLQNPQTIXHIQDPASQRLTWNKSPKSVLVIKKXRDASLLQPFKELCT 61
Query: 195 WLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICLGGDGT 254
L +E + +VYVE+ V++D +A++ SF VK K TFR+ DD++++IDFIICLGGDGT
Sbjct: 62 HLXEE-NXIVYVEKKVLEDPAIASDESFGAVKKKFCTFREDYDDISNQIDFIICLGGDGT 120
Query: 255 LLYASLLFQQSVPPVMAFHLGSLGFLTPFEFENFEDQVTNVLEGHAALTLRSRLRCIIMR 314
LLYAS LFQ SVPPV AFHLGSLGFLTPF FENF+ QVT V+EG+AA+ LRSRL+ +++
Sbjct: 121 LLYASSLFQGSVPPVXAFHLGSLGFLTPFSFENFQSQVTQVIEGNAAVVLRSRLKVRVVK 180
Query: 315 K------------NEETAKDA-------KPPTNILVLNEVVIDRGPSPYLSNIDLYLDGK 355
+ E+ ++ A K VLNEVVIDRGPS YLSN+D+YLDG
Sbjct: 181 ELRGKKTAVHNGLGEKGSQAAGLDXDVGKQAXQYQVLNEVVIDRGPSSYLSNVDVYLDGH 240
Query: 356 LITSVQGDGLIVSTPTGSTAYAVAAGASMIHPSVPAIMVTPICPHSLSFRPIVVPAGVEL 415
LIT+VQGDG+IVSTPTGSTAYA AAGAS IHP+VPAI +TPICPHSLSFRPIVVPAGVEL
Sbjct: 241 LITTVQGDGVIVSTPTGSTAYAAAAGASXIHPNVPAIXITPICPHSLSFRPIVVPAGVEL 300
Query: 416 KISVSPDSRNTAWVSFDGRNRQELLHGDSLRVTTSIYPVPSICAQDQIADWFDSLGECL 474
KI +SP++RNTAWVSFDGR RQE+ HGDS+ +TTS YP+PSIC +D ++DWF+SL +CL
Sbjct: 301 KIXLSPEARNTAWVSFDGRKRQEIRHGDSISITTSCYPLPSICVRDPVSDWFESLAQCL 359
>pdb|3AFO|A Chain A, Crystal Structure Of Yeast Nadh Kinase Complexed With Nadh
pdb|3AFO|B Chain B, Crystal Structure Of Yeast Nadh Kinase Complexed With Nadh
Length = 388
Score = 172 bits (435), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 98/302 (32%), Positives = 170/302 (56%), Gaps = 24/302 (7%)
Query: 163 QRLTWYKPPLTVLVIKKVRDVSVLQPFVKLVKWLIQ---EKSMLVY--VEQSVMDD--TL 215
Q L W P V + KK S + V+ + L + E +++V V + + D +
Sbjct: 33 QSLIWQNPLQNVYITKKPWTPSTREAMVEFITHLHESYPEVNVIVQPDVAEEISQDFKSP 92
Query: 216 LATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICLGGDGTLLYASLLFQQS-VPPVMAFHL 274
L +P+ + + + D+ ++ D ++ LGGDGT+L+ +F + VPPV+AF L
Sbjct: 93 LENDPN-----RPHILYTGPEQDIVNRTDLLVTLGGDGTILHGVSMFGNTQVPPVLAFAL 147
Query: 275 GSLGFLTPFEFENFEDQVTNVLEGHAALTLRSRLRCIIMRKNEETAKDAKPPTNILVLNE 334
G+LGFL+PF+F+ + V+ A R+RL C + +K+ ++ +N+
Sbjct: 148 GTLGFLSPFDFKEHKKVFQEVISSRAKCLHRTRLECHLKKKDSNSSIVTH------AMND 201
Query: 335 VVIDRGPSPYLSNIDLYLDGKLITSVQGDGLIVSTPTGSTAYAVAAGASMIHPSVPAIMV 394
+ + RG SP+L+N+D+++DG+ +T DG+ ++TPTGSTAY+++AG S++ P VPAI++
Sbjct: 202 IFLHRGNSPHLTNLDIFIDGEFLTRTTADGVALATPTGSTAYSLSAGGSIVSPLVPAILM 261
Query: 395 TPICPHSLSFRPIVVPAGVELKISVSPD-----SRNTAWVSFDGRNRQELLHGDSLRVTT 449
TPICP SLSFRP+++P ++I + + +S DG +Q+L GD + V
Sbjct: 262 TPICPRSLSFRPLILPHSSHIRIKIGSKLNQKPVNSVVKLSVDGIPQQDLDVGDEIYVIN 321
Query: 450 SI 451
+
Sbjct: 322 EV 323
>pdb|4HAO|A Chain A, Crystal Structure Of Inorganic PolyphosphateATP-Nad Kinase
From Yersinia Pestis Co92
pdb|4HAO|B Chain B, Crystal Structure Of Inorganic PolyphosphateATP-Nad Kinase
From Yersinia Pestis Co92
Length = 304
Score = 116 bits (290), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 147/286 (51%), Gaps = 23/286 (8%)
Query: 192 LVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICLGG 251
L WL + + V VEQ + D L + ++ D+ K D + +GG
Sbjct: 27 LYHWL-KARGYAVMVEQQIAHDLNLTDAITGSLA------------DIGQKADLAVVVGG 73
Query: 252 DGTLLYASLLFQQSVPPVMAFHLGSLGFLTPFEFENFEDQVTNVLEGHAALTLRSRLRCI 311
DG +L A+ + + V+ + G+LGFLT + +N Q+++VLEG R L
Sbjct: 74 DGNMLGAARVLARYDIKVIGVNRGNLGFLTDLDPDNALQQLSDVLEGEYLSEQRFLLETH 133
Query: 312 IMRKNEETAKDAKPPTNILVLNEVVIDRGPSPYLSNIDLYLDGKLITSVQGDGLIVSTPT 371
+ R N+++ +NEVV+ G ++ ++Y+D + S + DGLI++TPT
Sbjct: 134 VRRTNQQSRIST-------AINEVVLHPGKVAHMIEFEVYIDDRFAFSQRSDGLIIATPT 186
Query: 372 GSTAYAVAAGASMIHPSVPAIMVTPICPHSLSFRPIVVPAGVELKISVSPDSRNTAWVSF 431
GSTAY+++AG ++ P++ AI++ P+ PH+L+ RP+V+ + +++ S + + +S
Sbjct: 187 GSTAYSLSAGGPILTPTLDAIVLVPMFPHTLTARPLVISSSSTIRLKFSHITSDLE-ISC 245
Query: 432 DGRNRQELLHGDSLRVTTSIYPVPSICAQDQIADWFDSLGECLHWN 477
D + + G+ + + S + + I +D +F++L L W+
Sbjct: 246 DSQIALPIQEGEEVLIRRSDFHLNLIHPKDY--SYFNTLSTKLGWS 289
>pdb|2AN1|A Chain A, Structural Genomics, The Crystal Structure Of A Putative
Kinase From Salmonella Typhimurim Lt2
pdb|2AN1|B Chain B, Structural Genomics, The Crystal Structure Of A Putative
Kinase From Salmonella Typhimurim Lt2
pdb|2AN1|C Chain C, Structural Genomics, The Crystal Structure Of A Putative
Kinase From Salmonella Typhimurim Lt2
pdb|2AN1|D Chain D, Structural Genomics, The Crystal Structure Of A Putative
Kinase From Salmonella Typhimurim Lt2
Length = 292
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/304 (26%), Positives = 150/304 (49%), Gaps = 23/304 (7%)
Query: 176 VIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDG 235
++ R + L L +WL ++ V VEQ + + L P+ T+
Sbjct: 10 IVGHPRHPTALTTHEMLYRWLC-DQGYEVIVEQQIAHELQLKNVPTGTLA---------- 58
Query: 236 KDDLTDKIDFIICLGGDGTLLYASLLFQQSVPPVMAFHLGSLGFLTPFEFENFEDQVTNV 295
++ + D + +GGDG +L A+ + V+ + G+LGFLT + +N Q+++V
Sbjct: 59 --EIGQQADLAVVVGGDGNMLGAARTLARYDINVIGINRGNLGFLTDLDPDNALQQLSDV 116
Query: 296 LEGHAALTLRSRLRCIIMRKNEETAKDAKPPTNILVLNEVVIDRGPSPYLSNIDLYLDGK 355
LEG R L + +++ + +NEVV+ G ++ ++Y+D
Sbjct: 117 LEGRYISEKRFLLEAQVCQQDRQKRIST-------AINEVVLHPGKVAHMIEFEVYIDET 169
Query: 356 LITSVQGDGLIVSTPTGSTAYAVAAGASMIHPSVPAIMVTPICPHSLSFRPIVVPAGVEL 415
S + DGLI+STPTGSTAY+++AG ++ PS+ AI + P+ PH+LS RP+V+ + +
Sbjct: 170 FAFSQRSDGLIISTPTGSTAYSLSAGGPILTPSLDAITLVPMFPHTLSARPLVINSSSTI 229
Query: 416 KISVSPDSRNTAWVSFDGRNRQELLHGDSLRVTTSIYPVPSICAQDQIADWFDSLGECLH 475
++ S R+ +S D + + G+ + + Y + I +D +F++L L
Sbjct: 230 RLRFS-HRRSDLEISCDSQIALPIQEGEDVLIRRCDYHLNLIHPKDY--SYFNTLSTKLG 286
Query: 476 WNVR 479
W+ +
Sbjct: 287 WSKK 290
>pdb|1Y3H|A Chain A, Crystal Structure Of Inorganic PolyphosphateATP-Nad Kinase
From Mycobacterium Tuberculosis
pdb|1Y3H|B Chain B, Crystal Structure Of Inorganic PolyphosphateATP-Nad Kinase
From Mycobacterium Tuberculosis
Length = 307
Score = 102 bits (253), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 111/221 (50%), Gaps = 8/221 (3%)
Query: 234 DGKDDLTDKIDFIICLGGDGTLLYASLLFQQSVPPVMAFHLGSLGFLTPFEFENFEDQVT 293
D D + ++ LGGDGT L A+ L + + PV+ +LG +GFL E E + +
Sbjct: 67 DADQHAADGCELVLVLGGDGTFLRAAELARNASIPVLGVNLGRIGFLAEAEAEAIDAVLE 126
Query: 294 NVLEGHAALTLRSRLRCIIMRKNEETAKDAKPPTNILVLNEVVIDRGPSPYLSNIDLYLD 353
+V+ + R L ++ + + LNEV +++GP + + + +D
Sbjct: 127 HVVAQDYRVEDRLTLDVVVRQGGRIVNRG-------WALNEVSLEKGPRLGVLGVVVEID 179
Query: 354 GKLITSVQGDGLIVSTPTGSTAYAVAAGASMIHPSVPAIMVTPICPHSLSFRPIVVPAGV 413
G+ +++ DG++VSTPTGSTAYA +AG ++ P + AI+V P H+L RP+V
Sbjct: 180 GRPVSAFGCDGVLVSTPTGSTAYAFSAGGPVLWPDLEAILVVPNNAHALFGRPMVTSPEA 239
Query: 414 ELKISVSPDSRNTAWVSFDGRNRQELLHGDSLRVTTSIYPV 454
+ I + D + A V DGR + G L VT + V
Sbjct: 240 TIAIEIEADGHD-ALVFCDGRREMLIPAGSRLEVTRCVTSV 279
>pdb|1U0R|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Nad Kinase
pdb|1U0R|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Nad Kinase
pdb|1U0R|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Nad Kinase
pdb|1U0R|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Nad Kinase
pdb|1U0T|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Nad Kinase
pdb|1U0T|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Nad Kinase
pdb|1Y3I|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Nad
Kinase-Nad Complex
pdb|1Y3I|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Nad
Kinase-Nad Complex
Length = 307
Score = 102 bits (253), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 111/221 (50%), Gaps = 8/221 (3%)
Query: 234 DGKDDLTDKIDFIICLGGDGTLLYASLLFQQSVPPVMAFHLGSLGFLTPFEFENFEDQVT 293
D D + ++ LGGDGT L A+ L + + PV+ +LG +GFL E E + +
Sbjct: 67 DADQHAADGCELVLVLGGDGTFLRAAELARNASIPVLGVNLGRIGFLAEAEAEAIDAVLE 126
Query: 294 NVLEGHAALTLRSRLRCIIMRKNEETAKDAKPPTNILVLNEVVIDRGPSPYLSNIDLYLD 353
+V+ + R L ++ + + LNEV +++GP + + + +D
Sbjct: 127 HVVAQDYRVEDRLTLDVVVRQGGRIVNRG-------WALNEVSLEKGPRLGVLGVVVEID 179
Query: 354 GKLITSVQGDGLIVSTPTGSTAYAVAAGASMIHPSVPAIMVTPICPHSLSFRPIVVPAGV 413
G+ +++ DG++VSTPTGSTAYA +AG ++ P + AI+V P H+L RP+V
Sbjct: 180 GRPVSAFGCDGVLVSTPTGSTAYAFSAGGPVLWPDLEAILVVPNNAHALFGRPMVTSPEA 239
Query: 414 ELKISVSPDSRNTAWVSFDGRNRQELLHGDSLRVTTSIYPV 454
+ I + D + A V DGR + G L VT + V
Sbjct: 240 TIAIEIEADGHD-ALVFCDGRREMLIPAGSRLEVTRCVTSV 279
>pdb|1Z0S|A Chain A, Crystal Structure Of An Nad Kinase From Archaeoglobus
Fulgidus In Complex With Atp
pdb|1Z0S|B Chain B, Crystal Structure Of An Nad Kinase From Archaeoglobus
Fulgidus In Complex With Atp
pdb|1Z0S|C Chain C, Crystal Structure Of An Nad Kinase From Archaeoglobus
Fulgidus In Complex With Atp
pdb|1Z0S|D Chain D, Crystal Structure Of An Nad Kinase From Archaeoglobus
Fulgidus In Complex With Atp
pdb|1Z0U|A Chain A, Crystal Structure Of A Nad Kinase From Archaeoglobus
Fulgidus Bound By Nadp
pdb|1Z0U|B Chain B, Crystal Structure Of A Nad Kinase From Archaeoglobus
Fulgidus Bound By Nadp
pdb|1Z0Z|A Chain A, Crystal Structure Of A Nad Kinase From Archaeoglobus
Fulgidus In Complex With Nad
pdb|1Z0Z|B Chain B, Crystal Structure Of A Nad Kinase From Archaeoglobus
Fulgidus In Complex With Nad
pdb|1Z0Z|C Chain C, Crystal Structure Of A Nad Kinase From Archaeoglobus
Fulgidus In Complex With Nad
pdb|1Z0Z|D Chain D, Crystal Structure Of A Nad Kinase From Archaeoglobus
Fulgidus In Complex With Nad
Length = 278
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 97/196 (49%), Gaps = 22/196 (11%)
Query: 241 DKIDFIICLGGDGTLLYASLLFQQSVPPVMAFHLGSLGFLTPFEFENFEDQVTNVLEGHA 300
+ DFI+ +GGDGT+L L + PP+ + G +G LT ENFE ++ +E
Sbjct: 67 ENFDFIVSVGGDGTILRI-LQKLKRCPPIFGINTGRVGLLTHASPENFEVELKKAVEKFE 125
Query: 301 ALTLRSRLRCIIMRKNEETAKDAKPPTNILVLNEV-VIDRGPSPYLSNIDLYLDGKLITS 359
R+ C M ++L LNE+ V+ R P+ + ++ L +DG +
Sbjct: 126 VERF-PRVSCSAM-------------PDVLALNEIAVLSRKPAKMI-DVALRVDGVEVDR 170
Query: 360 VQGDGLIVSTPTGSTAYAVAAGASMIHPSVPAIMVTPICPHSLSFRPIVVPAGVELKISV 419
++ DG IV+T GST YA +AG ++ P + ++ PI P ++P VV +E KI V
Sbjct: 171 IRCDGFIVATQIGSTGYAFSAGGPVVEPYLECFILIPIAPFRFGWKPYVV--SMERKIEV 228
Query: 420 SPDSRNTAWVSFDGRN 435
+ A V DG+
Sbjct: 229 IAEK---AIVVADGQK 241
>pdb|1SUW|A Chain A, Crystal Structure Of A Nad Kinase From Archaeoglobus
Fulgidus In Complex With Its Substrate And Product:
Insights Into The Catalysis Of Nad Kinase
pdb|1SUW|B Chain B, Crystal Structure Of A Nad Kinase From Archaeoglobus
Fulgidus In Complex With Its Substrate And Product:
Insights Into The Catalysis Of Nad Kinase
pdb|1SUW|C Chain C, Crystal Structure Of A Nad Kinase From Archaeoglobus
Fulgidus In Complex With Its Substrate And Product:
Insights Into The Catalysis Of Nad Kinase
pdb|1SUW|D Chain D, Crystal Structure Of A Nad Kinase From Archaeoglobus
Fulgidus In Complex With Its Substrate And Product:
Insights Into The Catalysis Of Nad Kinase
Length = 249
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 97/196 (49%), Gaps = 22/196 (11%)
Query: 241 DKIDFIICLGGDGTLLYASLLFQQSVPPVMAFHLGSLGFLTPFEFENFEDQVTNVLEGHA 300
+ DFI+ +GGDGT+L L + PP+ + G +G LT ENFE ++ +E
Sbjct: 38 ENFDFIVSVGGDGTILRI-LQKLKRCPPIFGINTGRVGLLTHASPENFEVELKKAVEKFE 96
Query: 301 ALTLRSRLRCIIMRKNEETAKDAKPPTNILVLNEV-VIDRGPSPYLSNIDLYLDGKLITS 359
R+ C M ++L LNE+ V+ R P+ + ++ L +DG +
Sbjct: 97 VERF-PRVSCSAM-------------PDVLALNEIAVLSRKPAKMI-DVALRVDGVEVDR 141
Query: 360 VQGDGLIVSTPTGSTAYAVAAGASMIHPSVPAIMVTPICPHSLSFRPIVVPAGVELKISV 419
++ DG IV+T GST YA +AG ++ P + ++ PI P ++P VV +E KI V
Sbjct: 142 IRCDGFIVATQIGSTGYAFSAGGPVVEPYLECFILIPIAPFRFGWKPYVV--SMERKIEV 199
Query: 420 SPDSRNTAWVSFDGRN 435
+ A V DG+
Sbjct: 200 IAEK---AIVVADGQK 212
>pdb|1YT5|A Chain A, Crystal Structure Of Nad Kinase From Thermotoga Maritima
pdb|1YT5|B Chain B, Crystal Structure Of Nad Kinase From Thermotoga Maritima
pdb|1YT5|C Chain C, Crystal Structure Of Nad Kinase From Thermotoga Maritima
pdb|1YT5|D Chain D, Crystal Structure Of Nad Kinase From Thermotoga Maritima
Length = 258
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 87/179 (48%), Gaps = 13/179 (7%)
Query: 244 DFIICLGGDGTLLYASLLFQQSVPPVMAFHLGSLGFLTPFEFENFEDQVTNVLEGHAALT 303
D I+ +GGDGT+L A+ P V F G LGFLT + D++ LE
Sbjct: 43 DLIVVVGGDGTVLKAAKKAADGTPMV-GFKAGRLGFLTSYTL----DEIDRFLEDLRNWN 97
Query: 304 LRSRLRCIIMRKNEETAKDAKPPTNILVLNEVVIDRGPSPYLSNIDLYLDGKLITSVQGD 363
R R I ++E N L LN+V ++R S + I++ ++ D
Sbjct: 98 FREETRWFIQIESE--------LGNHLALNDVTLERDLSGKMVEIEVEVEHHSSMWFFAD 149
Query: 364 GLIVSTPTGSTAYAVAAGASMIHPSVPAIMVTPICPHSLSFRPIVVPAGVELKISVSPD 422
G+++STPTGSTAY+++ G +I P + ++PI P R +V+P+ ++ + D
Sbjct: 150 GVVISTPTGSTAYSLSIGGPIIFPECEVLEISPIAPQFFLTRSVVIPSNFKVVVESQRD 208
>pdb|2I1W|A Chain A, Crystal Structure Of Nad Kinase 1 From Listeria
Monocytogenes
pdb|2I1W|B Chain B, Crystal Structure Of Nad Kinase 1 From Listeria
Monocytogenes
pdb|2I1W|C Chain C, Crystal Structure Of Nad Kinase 1 From Listeria
Monocytogenes
pdb|2I1W|D Chain D, Crystal Structure Of Nad Kinase 1 From Listeria
Monocytogenes
pdb|2I29|A Chain A, Crystal Structure Of Nad Kinase 1 From Listeria
Monocytogenes
pdb|2I2A|A Chain A, Crystal Structure Of Lmnadk1 From Listeria Monocytogenes
pdb|2I2B|A Chain A, Crystal Structure Of Lmnadk1 From Listeria Monocytogenes
pdb|2I2C|A Chain A, Crystal Structure Of Lmnadk1
pdb|2I2D|A Chain A, Crystal Structure Of Lmnadk1
pdb|4DY6|A Chain A, Crystal Structure Of Nad Kinase 1 From Listeria
Monocytogenes In Complex With 2'-Phosphate
Bis(Adenosine)-5'-Diphosphate
pdb|3V7U|A Chain A, Crystal Structure Of Nad Kinase 1 From Listeria
Monocytogenes In Complex With Mta
pdb|3V7W|A Chain A, Crystal Structure Of Nad Kinase 1 From Listeria
Monocytogenes In Complex With 5'-Azido-5'-Deoxyadenosine
pdb|3V7Y|A Chain A, Crystal Structure Of Nad Kinase 1 From Listeria
Monocytogenes In Complex With
5'-N-Propargylamino-5'-Deoxyadenosine
pdb|3V80|A Chain A, Crystal Structure Of Nad Kinase 1 From Listeria
Monocytogenes In Complex With
5'-O-Propargylamino-5'-Deoxyadenosine
pdb|3V8M|A Chain A, Crystal Structure Of Nad Kinase 1 From Listeria
Monocytogenes In Complexe With
5'-Azido-8-Bromo-5'-Deoxyadenosine
pdb|3V8N|A Chain A, Crystal Structure Of Nad Kinase 1 From Listeria
Monocytogenes In Complex With
8-Bromo-5'-Amino-5'-Deoxyadenosine, Reacted With A
Citrate Molecule In N Site
pdb|3V8P|A Chain A, Crystal Structure Of Nad Kinase 1 From Listeria
Monocytogenes In Complex With A New Di-Adenosine
Inhibitor Formed In Situ
Length = 272
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 78/164 (47%), Gaps = 12/164 (7%)
Query: 237 DDLTDKIDFIICLGGDGTLLYASLLFQQSVPPV--MAFHLGSLGFLTPFEFENFEDQVTN 294
DD+ +I +I +GGDGT L A +++ + + + H G LGF + + V
Sbjct: 32 DDVEPEI--VISIGGDGTFLSAFHQYEERLDEIAFIGIHTGHLGFYADWRPAEADKLVKL 89
Query: 295 VLEGHAALTLRSRLRCIIMRKNEETAKDAKPPTNILVLNEVVIDRGPSPYLSNIDLYLDG 354
+ +G L+ + K L LNE + P++ +D+ ++
Sbjct: 90 LAKGEYQKVSYPLLKTTV------KYGIGKKEATYLALNESTVKSSGGPFV--VDVVIND 141
Query: 355 KLITSVQGDGLIVSTPTGSTAYAVAAGASMIHPSVPAIMVTPIC 398
+GDGL +STP+G+TAY + G +++HPS+ A+ +T +
Sbjct: 142 IHFERFRGDGLCMSTPSGTTAYNKSLGGALMHPSIEAMQLTEMA 185
>pdb|2Q5F|A Chain A, Crystal Structure Of Lmnadk1 From Listeria Monocytogenes
pdb|3V8Q|A Chain A, Crystal Structure Of Nad Kinase 1 H223e Mutant From
Listeria Monocytogenes In Complex With
5'-Amino-5'-Deoxyadenosine
pdb|3V8R|A Chain A, Crystal Structure Of Nad Kinase 1 H223e Mutant From
Listeria Monocytogenes In Complex With
5'-Amino-8-Bromo-5'-Deoxyadenosine
Length = 272
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 78/164 (47%), Gaps = 12/164 (7%)
Query: 237 DDLTDKIDFIICLGGDGTLLYASLLFQQSVPPV--MAFHLGSLGFLTPFEFENFEDQVTN 294
DD+ +I +I +GGDGT L A +++ + + + H G LGF + + V
Sbjct: 32 DDVEPEI--VISIGGDGTFLSAFHQYEERLDEIAFIGIHTGHLGFYADWRPAEADKLVKL 89
Query: 295 VLEGHAALTLRSRLRCIIMRKNEETAKDAKPPTNILVLNEVVIDRGPSPYLSNIDLYLDG 354
+ +G L+ + K L LNE + P++ +D+ ++
Sbjct: 90 LAKGEYQKVSYPLLKTTV------KYGIGKKEATYLALNESTVKSSGGPFV--VDVVIND 141
Query: 355 KLITSVQGDGLIVSTPTGSTAYAVAAGASMIHPSVPAIMVTPIC 398
+GDGL +STP+G+TAY + G +++HPS+ A+ +T +
Sbjct: 142 IHFERFRGDGLCMSTPSGTTAYNKSLGGALMHPSIEAMQLTEMA 185
>pdb|2I2F|A Chain A, Crystal Structure Of Lmnadk1
Length = 272
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 78/164 (47%), Gaps = 12/164 (7%)
Query: 237 DDLTDKIDFIICLGGDGTLLYASLLFQQSVPPV--MAFHLGSLGFLTPFEFENFEDQVTN 294
DD+ +I +I +GG+GT L A +++ + + + H G LGF + + V
Sbjct: 32 DDVEPEI--VISIGGNGTFLSAFHQYEERLDEIAFIGIHTGHLGFYADWRPAEADKLVKL 89
Query: 295 VLEGHAALTLRSRLRCIIMRKNEETAKDAKPPTNILVLNEVVIDRGPSPYLSNIDLYLDG 354
+ +G L+ + K L LNE + P++ +D+ ++
Sbjct: 90 LAKGEYQKVSYPLLKTTV------KYGIGKKEATYLALNESTVKSSGGPFV--VDVVIND 141
Query: 355 KLITSVQGDGLIVSTPTGSTAYAVAAGASMIHPSVPAIMVTPIC 398
+GDGL +STP+G+TAY + G +++HPS+ A+ +T +
Sbjct: 142 IHFERFRGDGLCMSTPSGTTAYNKSLGGALMHPSIEAMQLTEMA 185
>pdb|2GNO|A Chain A, Crystal Structure Of A Dna Polymerase Iii, Gamma
Subunit-Related Protein (Tm0771) From Thermotoga
Maritima Msb8 At 2.00 A Resolution
Length = 305
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 284 EFENFEDQVTNVLEGHAALTLRSRLRCIIMRKNE-ETAKDAK 324
EF DQVTN + G A L RL II+ +N E+ +D K
Sbjct: 224 EFFALFDQVTNTITGKDAFLLIQRLTRIILHENTWESVEDQK 265
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,874,227
Number of Sequences: 62578
Number of extensions: 588889
Number of successful extensions: 1174
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1144
Number of HSP's gapped (non-prelim): 16
length of query: 511
length of database: 14,973,337
effective HSP length: 103
effective length of query: 408
effective length of database: 8,527,803
effective search space: 3479343624
effective search space used: 3479343624
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)