Query psy5950
Match_columns 511
No_of_seqs 241 out of 1649
Neff 4.9
Searched_HMMs 46136
Date Fri Aug 16 22:36:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5950.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5950hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2178|consensus 100.0 1.8E-86 3.9E-91 681.5 29.5 357 126-485 48-409 (409)
2 PLN02935 Bifunctional NADH kin 100.0 3.2E-76 6.9E-81 627.0 36.2 315 163-484 186-502 (508)
3 PLN02727 NAD kinase 100.0 1.8E-75 3.9E-80 648.6 36.8 318 156-485 661-986 (986)
4 PRK02649 ppnK inorganic polyph 100.0 1.2E-73 2.6E-78 581.1 35.9 300 172-487 2-302 (305)
5 PRK04539 ppnK inorganic polyph 100.0 7E-73 1.5E-77 573.4 34.6 291 169-479 3-294 (296)
6 PRK01911 ppnK inorganic polyph 100.0 1.2E-72 2.6E-77 570.7 35.2 290 173-481 2-291 (292)
7 PRK14077 pnk inorganic polypho 100.0 3.9E-72 8.4E-77 565.8 34.7 278 170-477 9-286 (287)
8 PRK03378 ppnK inorganic polyph 100.0 1.3E-71 2.8E-76 563.2 36.5 287 170-479 4-290 (292)
9 PRK03372 ppnK inorganic polyph 100.0 2.2E-71 4.7E-76 564.7 36.4 299 169-481 3-301 (306)
10 PRK01231 ppnK inorganic polyph 100.0 1.5E-69 3.3E-74 548.8 36.0 288 171-480 4-291 (295)
11 PRK02155 ppnK NAD(+)/NADH kina 100.0 1.4E-69 3.1E-74 547.9 35.0 286 170-479 4-289 (291)
12 PRK02231 ppnK inorganic polyph 100.0 2.4E-69 5.3E-74 541.8 32.9 268 189-478 2-270 (272)
13 PRK01185 ppnK inorganic polyph 100.0 1.2E-66 2.5E-71 522.2 34.7 265 173-475 2-266 (271)
14 PRK02645 ppnK inorganic polyph 100.0 3.4E-66 7.5E-71 526.2 35.2 292 171-483 3-299 (305)
15 COG0061 nadF NAD kinase [Coenz 100.0 1.1E-65 2.4E-70 516.9 35.7 281 172-478 1-281 (281)
16 PRK14076 pnk inorganic polypho 100.0 5.5E-66 1.2E-70 562.5 35.8 286 165-477 284-569 (569)
17 PRK03501 ppnK inorganic polyph 100.0 2.7E-65 5.8E-70 510.7 34.1 254 172-474 3-263 (264)
18 PRK03708 ppnK inorganic polyph 100.0 5.7E-65 1.2E-69 511.3 35.2 274 173-477 2-276 (277)
19 PRK04885 ppnK inorganic polyph 100.0 1.8E-63 3.9E-68 497.8 33.2 251 173-475 2-261 (265)
20 PRK14075 pnk inorganic polypho 100.0 1E-61 2.2E-66 482.8 33.4 253 173-479 2-254 (256)
21 PRK00561 ppnK inorganic polyph 100.0 6.9E-61 1.5E-65 477.6 31.6 245 173-474 2-255 (259)
22 PF01513 NAD_kinase: ATP-NAD k 100.0 1.4E-60 3E-65 479.3 26.6 279 173-459 1-285 (285)
23 PRK04761 ppnK inorganic polyph 100.0 3.7E-55 8E-60 433.7 27.0 213 241-471 24-240 (246)
24 PLN02929 NADH kinase 100.0 5.7E-54 1.2E-58 435.3 30.3 204 241-459 63-296 (301)
25 KOG4180|consensus 99.8 9.5E-20 2E-24 184.8 11.6 140 240-379 103-276 (395)
26 TIGR00147 lipid kinase, YegS/R 99.0 2.9E-08 6.3E-13 99.9 20.6 112 172-300 2-119 (293)
27 PRK13057 putative lipid kinase 98.1 0.00025 5.3E-09 71.8 18.5 60 241-300 49-110 (287)
28 PRK00861 putative lipid kinase 98.1 0.0021 4.5E-08 65.4 24.7 112 171-300 2-117 (300)
29 PRK12361 hypothetical protein; 98.0 0.0021 4.6E-08 71.0 24.2 245 171-461 242-543 (547)
30 PRK13059 putative lipid kinase 97.9 0.0021 4.5E-08 65.6 21.9 110 172-300 2-118 (295)
31 PRK13337 putative lipid kinase 97.8 0.0032 6.9E-08 64.3 19.9 110 172-300 2-119 (304)
32 PRK13055 putative lipid kinase 97.7 0.0079 1.7E-07 62.6 21.6 113 171-300 2-122 (334)
33 PRK11914 diacylglycerol kinase 97.4 0.00079 1.7E-08 68.6 10.2 112 171-301 8-126 (306)
34 COG1597 LCB5 Sphingosine kinas 97.3 0.029 6.3E-07 57.9 20.2 252 171-460 2-296 (301)
35 PRK13054 lipid kinase; Reviewe 96.9 0.0045 9.7E-08 63.1 9.7 111 170-300 2-120 (300)
36 COG3199 Predicted inorganic po 96.8 0.0016 3.5E-08 68.2 5.6 69 241-310 99-169 (355)
37 TIGR03702 lip_kinase_YegS lipi 96.4 0.013 2.8E-07 59.6 8.8 60 241-300 51-116 (293)
38 PF00781 DAGK_cat: Diacylglyce 96.4 0.0076 1.6E-07 53.9 6.3 38 243-280 55-96 (130)
39 PLN02958 diacylglycerol kinase 96.3 0.021 4.7E-07 62.6 10.1 116 167-301 107-240 (481)
40 PLN02204 diacylglycerol kinase 94.5 0.2 4.3E-06 56.6 10.0 78 169-261 157-237 (601)
41 smart00046 DAGKc Diacylglycero 93.6 0.15 3.4E-06 45.6 5.7 35 242-276 49-88 (124)
42 TIGR02482 PFKA_ATP 6-phosphofr 91.3 0.29 6.3E-06 50.9 5.0 55 241-297 90-154 (301)
43 PRK14071 6-phosphofructokinase 90.0 0.41 9E-06 50.9 4.9 55 241-297 106-170 (360)
44 COG0205 PfkA 6-phosphofructoki 89.7 0.31 6.7E-06 51.8 3.7 54 241-296 93-156 (347)
45 TIGR02483 PFK_mixed phosphofru 89.1 0.47 1E-05 49.8 4.4 54 241-297 93-156 (324)
46 PTZ00286 6-phospho-1-fructokin 88.4 0.49 1.1E-05 52.0 4.2 54 241-296 175-243 (459)
47 cd08194 Fe-ADH6 Iron-containin 87.9 1.6 3.5E-05 46.1 7.6 89 171-274 23-130 (375)
48 PRK06830 diphosphate--fructose 87.6 0.55 1.2E-05 51.4 3.9 54 241-296 171-239 (443)
49 PLN02884 6-phosphofructokinase 86.7 0.54 1.2E-05 51.0 3.3 55 241-297 142-211 (411)
50 cd08179 NADPH_BDH NADPH-depend 86.6 1.4 3E-05 46.6 6.2 77 172-262 24-100 (375)
51 cd08186 Fe-ADH8 Iron-containin 86.5 1.8 4E-05 45.9 7.1 78 171-262 26-103 (383)
52 PLN02564 6-phosphofructokinase 86.5 0.68 1.5E-05 51.2 3.9 55 241-297 175-244 (484)
53 cd08176 LPO Lactadehyde:propan 86.4 1.5 3.3E-05 46.4 6.4 76 172-262 29-104 (377)
54 PRK06555 pyrophosphate--fructo 86.3 0.68 1.5E-05 50.2 3.7 71 241-314 111-196 (403)
55 cd08185 Fe-ADH1 Iron-containin 86.0 2.2 4.8E-05 45.2 7.4 77 172-262 26-102 (380)
56 cd00763 Bacterial_PFK Phosphof 85.9 0.76 1.7E-05 48.2 3.8 54 241-297 91-154 (317)
57 PRK14072 6-phosphofructokinase 85.8 0.71 1.5E-05 50.1 3.6 53 241-295 102-169 (416)
58 cd08187 BDH Butanol dehydrogen 85.8 1.8 3.8E-05 46.0 6.5 89 172-274 29-136 (382)
59 KOG4435|consensus 85.6 1.7 3.6E-05 47.2 6.1 86 241-337 115-213 (535)
60 cd08181 PPD-like 1,3-propanedi 85.5 2 4.3E-05 45.2 6.7 77 172-262 26-102 (357)
61 cd08171 GlyDH-like2 Glycerol d 85.3 2.4 5.2E-05 44.4 7.1 97 172-284 23-122 (345)
62 KOG0782|consensus 85.3 1.1 2.5E-05 50.2 4.8 68 245-312 419-497 (1004)
63 PRK06895 putative anthranilate 84.9 3.8 8.1E-05 39.2 7.7 35 241-276 42-82 (190)
64 PRK06186 hypothetical protein; 84.6 2.4 5.1E-05 42.8 6.4 36 240-275 51-91 (229)
65 COG1454 EutG Alcohol dehydroge 84.0 2.1 4.5E-05 46.1 6.0 78 170-262 28-105 (377)
66 cd08182 HEPD Hydroxyethylphosp 83.7 3 6.5E-05 43.9 7.1 74 171-262 23-96 (367)
67 cd08193 HVD 5-hydroxyvalerate 83.2 2.8 6E-05 44.4 6.6 77 171-262 26-102 (376)
68 PRK07053 glutamine amidotransf 82.8 6.8 0.00015 39.2 8.8 81 170-276 1-93 (234)
69 PF00365 PFK: Phosphofructokin 82.7 0.61 1.3E-05 48.0 1.4 54 241-296 91-154 (282)
70 cd08551 Fe-ADH iron-containing 82.5 2.4 5.1E-05 44.6 5.7 78 171-263 23-100 (370)
71 PRK09860 putative alcohol dehy 82.0 3 6.4E-05 44.5 6.3 78 171-263 31-108 (383)
72 cd07766 DHQ_Fe-ADH Dehydroquin 82.0 3.2 6.8E-05 42.8 6.3 87 171-274 23-112 (332)
73 PRK10624 L-1,2-propanediol oxi 81.5 3.8 8.2E-05 43.6 6.9 74 172-262 31-106 (382)
74 cd08170 GlyDH Glycerol dehydro 81.4 4.2 9.1E-05 42.5 7.1 86 172-274 23-109 (351)
75 PRK03202 6-phosphofructokinase 81.3 1.5 3.3E-05 46.0 3.8 53 241-296 92-154 (320)
76 cd08180 PDD 1,3-propanediol de 81.2 4.8 0.0001 41.8 7.4 86 171-274 22-117 (332)
77 TIGR02638 lactal_redase lactal 80.8 3.5 7.5E-05 43.8 6.3 75 171-262 29-105 (379)
78 cd08183 Fe-ADH2 Iron-containin 80.7 4.6 9.9E-05 42.8 7.1 72 172-262 23-94 (374)
79 CHL00101 trpG anthranilate syn 80.3 6 0.00013 37.9 7.2 35 242-276 43-82 (190)
80 cd00363 PFK Phosphofructokinas 79.7 1.4 3.1E-05 46.4 2.9 55 241-297 91-160 (338)
81 PRK06774 para-aminobenzoate sy 79.5 5.7 0.00012 37.9 6.7 34 242-276 43-82 (191)
82 PRK07765 para-aminobenzoate sy 79.1 6.5 0.00014 38.7 7.1 36 241-276 45-86 (214)
83 PRK00002 aroB 3-dehydroquinate 79.1 6.8 0.00015 41.3 7.7 32 242-274 92-126 (358)
84 cd08173 Gro1PDH Sn-glycerol-1- 78.8 6.7 0.00015 40.9 7.6 84 172-274 26-110 (339)
85 cd08549 G1PDH_related Glycerol 78.8 5 0.00011 41.9 6.6 86 172-274 25-112 (332)
86 cd08192 Fe-ADH7 Iron-containin 78.2 4.1 8.9E-05 42.9 5.8 77 171-262 24-100 (370)
87 KOG1116|consensus 77.9 3.5 7.5E-05 46.5 5.3 75 168-260 176-254 (579)
88 cd08172 GlyDH-like1 Glycerol d 77.9 5.7 0.00012 41.5 6.7 33 241-274 75-108 (347)
89 PF13685 Fe-ADH_2: Iron-contai 77.8 3.2 7E-05 42.2 4.7 96 170-283 18-118 (250)
90 cd08199 EEVS 2-epi-5-epi-valio 77.3 12 0.00025 39.8 8.8 93 169-274 24-122 (354)
91 TIGR01357 aroB 3-dehydroquinat 77.1 8.7 0.00019 40.1 7.8 33 241-274 80-115 (344)
92 cd08177 MAR Maleylacetate redu 76.8 3.8 8.2E-05 42.8 5.0 33 241-274 76-109 (337)
93 cd08169 DHQ-like Dehydroquinat 76.4 9.3 0.0002 40.3 7.8 91 171-274 23-117 (344)
94 TIGR02477 PFKA_PPi diphosphate 76.3 2.5 5.4E-05 47.5 3.7 53 241-295 160-229 (539)
95 PRK06490 glutamine amidotransf 76.0 11 0.00023 37.9 7.8 36 241-276 51-96 (239)
96 PRK08857 para-aminobenzoate sy 75.6 10 0.00023 36.3 7.3 34 242-276 43-82 (193)
97 cd08195 DHQS Dehydroquinate sy 75.6 9.1 0.0002 40.1 7.5 92 171-274 24-119 (345)
98 PRK09423 gldA glycerol dehydro 75.5 8.6 0.00019 40.6 7.3 86 172-274 30-116 (366)
99 PLN02251 pyrophosphate-depende 75.2 2.7 5.9E-05 47.5 3.6 54 241-296 189-259 (568)
100 PRK07567 glutamine amidotransf 75.1 7.1 0.00015 39.2 6.3 36 241-276 50-103 (242)
101 PRK07085 diphosphate--fructose 75.1 2.9 6.2E-05 47.2 3.8 53 241-295 163-232 (555)
102 PRK15454 ethanol dehydrogenase 74.7 4.7 0.0001 43.3 5.2 77 171-262 49-125 (395)
103 PRK10586 putative oxidoreducta 74.6 10 0.00022 40.4 7.5 33 241-274 85-118 (362)
104 PLN03028 pyrophosphate--fructo 74.4 3 6.5E-05 47.6 3.8 32 241-272 172-208 (610)
105 TIGR00566 trpG_papA glutamine 74.0 11 0.00024 36.1 7.1 34 242-276 43-82 (188)
106 cd08175 G1PDH Glycerol-1-phosp 74.0 11 0.00023 39.5 7.5 88 172-274 24-112 (348)
107 cd08178 AAD_C C-terminal alcoh 73.9 6.7 0.00014 41.9 6.1 76 171-263 21-98 (398)
108 cd08550 GlyDH-like Glycerol_de 73.8 10 0.00022 39.7 7.3 33 241-274 76-109 (349)
109 PRK05670 anthranilate synthase 73.2 8.1 0.00018 36.8 5.9 34 242-276 43-82 (189)
110 cd00765 Pyrophosphate_PFK Phos 73.0 3.3 7.3E-05 46.6 3.7 54 241-296 165-235 (550)
111 cd08189 Fe-ADH5 Iron-containin 72.6 6.9 0.00015 41.4 5.8 77 171-262 26-102 (374)
112 PRK00843 egsA NAD(P)-dependent 72.6 14 0.0003 38.9 8.0 32 242-274 87-119 (350)
113 cd08191 HHD 6-hydroxyhexanoate 72.2 8 0.00017 41.2 6.2 77 172-263 23-99 (386)
114 PTZ00468 phosphofructokinase f 72.2 3.2 6.9E-05 50.8 3.4 44 241-284 799-864 (1328)
115 cd08190 HOT Hydroxyacid-oxoaci 71.9 7.2 0.00016 42.0 5.8 76 172-262 24-99 (414)
116 TIGR02478 6PF1K_euk 6-phosphof 71.8 3.6 7.7E-05 48.0 3.6 55 241-297 477-547 (745)
117 cd00764 Eukaryotic_PFK Phospho 71.3 3.8 8.2E-05 47.9 3.7 55 241-297 477-547 (762)
118 cd01743 GATase1_Anthranilate_S 70.8 3.5 7.6E-05 38.9 2.8 36 241-276 41-81 (184)
119 PRK10310 PTS system galactitol 70.5 34 0.00073 29.5 8.6 92 172-298 3-94 (94)
120 cd01744 GATase1_CPSase Small c 70.2 7.5 0.00016 36.7 4.9 35 242-276 39-79 (178)
121 PTZ00287 6-phosphofructokinase 70.0 4 8.7E-05 50.4 3.6 55 241-297 927-998 (1419)
122 PF00465 Fe-ADH: Iron-containi 69.1 4.2 9.2E-05 42.7 3.2 75 172-263 22-98 (366)
123 KOG2387|consensus 69.0 15 0.00032 40.7 7.3 96 170-275 297-401 (585)
124 PLN02335 anthranilate synthase 69.0 19 0.00041 35.7 7.6 34 242-276 62-101 (222)
125 PRK13566 anthranilate synthase 67.9 17 0.00036 42.4 7.9 79 170-276 525-608 (720)
126 cd08188 Fe-ADH4 Iron-containin 67.6 11 0.00023 40.2 5.8 75 171-262 28-104 (377)
127 cd01746 GATase1_CTP_Synthase T 67.5 14 0.00031 37.0 6.5 36 240-275 53-93 (235)
128 TIGR01815 TrpE-clade3 anthrani 67.2 16 0.00034 42.6 7.6 78 171-276 516-598 (717)
129 PRK08250 glutamine amidotransf 66.7 27 0.00059 34.8 8.2 36 241-276 44-94 (235)
130 TIGR00337 PyrG CTP synthase. C 66.1 14 0.00031 41.5 6.7 85 171-275 289-381 (525)
131 PF08357 SEFIR: SEFIR domain; 65.5 6.9 0.00015 35.5 3.5 79 172-263 1-79 (150)
132 TIGR02478 6PF1K_euk 6-phosphof 65.4 5.4 0.00012 46.6 3.4 55 241-297 93-179 (745)
133 cd08174 G1PDH-like Glycerol-1- 65.2 19 0.00042 37.3 7.1 32 242-274 75-107 (331)
134 cd03785 GT1_MurG MurG is an N- 65.2 18 0.00039 36.4 6.8 58 237-298 247-324 (350)
135 PRK13805 bifunctional acetalde 64.5 24 0.00052 41.7 8.5 79 170-262 479-558 (862)
136 PRK06203 aroB 3-dehydroquinate 64.5 24 0.00053 38.0 7.9 34 241-275 110-146 (389)
137 COG0745 OmpR Response regulato 63.1 1.5E+02 0.0032 29.6 12.7 101 173-301 2-121 (229)
138 PRK09065 glutamine amidotransf 61.8 26 0.00055 35.0 7.0 36 241-276 53-98 (237)
139 cd08197 DOIS 2-deoxy-scyllo-in 61.3 31 0.00068 36.6 7.9 92 171-275 23-119 (355)
140 PTZ00468 phosphofructokinase f 60.9 7.7 0.00017 47.7 3.6 44 241-284 195-255 (1328)
141 cd00764 Eukaryotic_PFK Phospho 60.4 8 0.00017 45.3 3.5 55 241-297 96-182 (762)
142 PF13528 Glyco_trans_1_3: Glyc 60.1 20 0.00043 35.9 5.9 85 170-274 191-278 (318)
143 cd01741 GATase1_1 Subgroup of 59.8 27 0.00059 32.8 6.5 37 240-276 44-91 (188)
144 PRK11366 puuD gamma-glutamyl-g 59.7 18 0.00039 36.5 5.6 84 173-276 9-117 (254)
145 PLN02834 3-dehydroquinate synt 59.6 28 0.00061 38.1 7.4 32 243-275 164-198 (433)
146 PRK07649 para-aminobenzoate/an 59.1 27 0.00058 33.9 6.5 34 242-276 43-82 (195)
147 cd08198 DHQS-like2 Dehydroquin 59.0 35 0.00075 36.7 7.8 34 241-275 98-134 (369)
148 PRK15138 aldehyde reductase; P 58.6 14 0.0003 39.6 4.8 75 172-262 30-104 (387)
149 COG1370 Prefoldin, molecular c 57.6 33 0.00072 32.8 6.5 112 331-450 28-153 (155)
150 PRK13527 glutamine amidotransf 56.0 40 0.00086 32.5 7.1 36 241-276 42-87 (200)
151 PRK05380 pyrG CTP synthetase; 55.7 26 0.00056 39.6 6.3 36 240-275 341-381 (533)
152 cd01745 GATase1_2 Subgroup of 55.6 17 0.00036 34.9 4.3 35 241-275 52-109 (189)
153 PRK05637 anthranilate synthase 55.1 32 0.0007 33.8 6.3 35 242-276 44-83 (208)
154 TIGR01426 MGT glycosyltransfer 54.7 77 0.0017 33.1 9.4 33 238-274 287-319 (392)
155 COG0504 PyrG CTP synthase (UTP 53.8 37 0.0008 38.1 7.0 33 243-275 344-381 (533)
156 COG4069 Uncharacterized protei 53.3 11 0.00023 39.8 2.7 36 239-275 263-298 (367)
157 TIGR03405 Phn_Fe-ADH phosphona 52.5 22 0.00047 37.5 5.0 76 172-262 24-99 (355)
158 TIGR03800 PLP_synth_Pdx2 pyrid 51.4 39 0.00084 32.5 6.1 36 241-276 35-80 (184)
159 cd08184 Fe-ADH3 Iron-containin 50.9 46 0.00099 35.3 7.1 20 242-262 81-100 (347)
160 PF04101 Glyco_tran_28_C: Glyc 50.0 5.7 0.00012 36.4 0.2 33 236-272 66-98 (167)
161 cd01742 GATase1_GMP_Synthase T 49.9 25 0.00054 32.9 4.5 36 241-276 40-80 (181)
162 COG0371 GldA Glycerol dehydrog 49.1 44 0.00094 36.1 6.6 41 241-282 83-126 (360)
163 COG1819 Glycosyl transferases, 48.3 30 0.00066 37.3 5.4 59 237-299 295-369 (406)
164 PRK01175 phosphoribosylformylg 47.7 70 0.0015 32.8 7.6 41 240-280 46-108 (261)
165 PLN02327 CTP synthase 47.0 47 0.001 37.8 6.7 35 240-275 360-400 (557)
166 PF06283 ThuA: Trehalose utili 47.0 2.7E+02 0.006 26.8 17.1 102 173-303 1-112 (217)
167 PF00117 GATase: Glutamine ami 46.9 11 0.00024 35.4 1.6 37 240-276 40-82 (192)
168 TIGR01133 murG undecaprenyldip 46.8 63 0.0014 32.5 7.1 58 237-298 245-321 (348)
169 cd05566 PTS_IIB_galactitol PTS 46.8 1.5E+02 0.0032 24.5 8.2 88 172-295 1-88 (89)
170 PF04392 ABC_sub_bind: ABC tra 46.5 59 0.0013 32.9 6.9 110 171-299 131-252 (294)
171 KOG1115|consensus 46.1 17 0.00037 39.9 3.0 20 241-260 216-235 (516)
172 cd01747 GATase1_Glutamyl_Hydro 45.6 32 0.0007 35.2 4.9 36 240-275 52-101 (273)
173 PRK12564 carbamoyl phosphate s 42.1 32 0.00069 36.9 4.3 35 242-276 218-258 (360)
174 TIGR01737 FGAM_synth_I phospho 41.9 1E+02 0.0022 30.5 7.5 36 241-276 39-88 (227)
175 PF00885 DMRL_synthase: 6,7-di 41.8 99 0.0022 29.0 7.0 99 171-295 3-119 (144)
176 cd03784 GT1_Gtf_like This fami 41.3 34 0.00074 35.5 4.3 59 236-298 298-372 (401)
177 TIGR01823 PabB-fungal aminodeo 41.2 64 0.0014 37.9 6.9 36 241-276 52-96 (742)
178 PF13380 CoA_binding_2: CoA bi 39.5 2.2E+02 0.0048 25.2 8.7 87 172-275 1-88 (116)
179 cd01537 PBP1_Repressors_Sugar_ 39.1 1.2E+02 0.0027 28.2 7.4 36 241-276 54-89 (264)
180 TIGR01368 CPSaseIIsmall carbam 39.0 39 0.00084 36.3 4.4 34 242-276 214-253 (358)
181 COG0518 GuaA GMP synthase - Gl 37.6 2.2E+02 0.0048 27.9 9.1 35 242-276 45-89 (198)
182 cd08196 DHQS-like1 Dehydroquin 37.2 85 0.0019 33.3 6.6 29 243-272 77-108 (346)
183 PF04392 ABC_sub_bind: ABC tra 36.8 70 0.0015 32.4 5.7 83 173-271 1-86 (294)
184 PRK12838 carbamoyl phosphate s 36.3 94 0.002 33.3 6.7 34 242-276 208-247 (354)
185 CHL00188 hisH imidazole glycer 36.3 60 0.0013 32.0 4.9 37 242-279 39-87 (210)
186 cd01391 Periplasmic_Binding_Pr 36.1 1.4E+02 0.0031 27.3 7.2 36 241-276 57-92 (269)
187 cd06267 PBP1_LacI_sugar_bindin 36.0 1.4E+02 0.0031 27.8 7.3 85 174-275 2-87 (264)
188 KOG3349|consensus 35.8 28 0.00061 33.6 2.4 32 238-273 76-108 (170)
189 TIGR00888 guaA_Nterm GMP synth 35.3 24 0.00051 33.5 1.9 34 243-276 42-80 (188)
190 PRK08007 para-aminobenzoate sy 34.6 1.1E+02 0.0025 29.2 6.5 34 242-276 43-82 (187)
191 cd03794 GT1_wbuB_like This fam 34.3 1.5E+02 0.0033 28.7 7.4 56 239-298 291-365 (394)
192 TIGR03590 PseG pseudaminic aci 34.1 37 0.0008 34.5 3.1 33 237-274 236-268 (279)
193 cd03128 GAT_1 Type 1 glutamine 34.0 50 0.0011 24.6 3.2 37 240-276 44-89 (92)
194 COG0512 PabA Anthranilate/para 33.3 2.2E+02 0.0049 28.2 8.2 34 242-276 45-84 (191)
195 PRK13525 glutamine amidotransf 33.0 32 0.00068 33.1 2.3 36 241-276 37-82 (189)
196 PRK11249 katE hydroperoxidase 30.7 2.3E+02 0.005 33.6 9.1 99 166-275 592-700 (752)
197 PTZ00287 6-phosphofructokinase 30.6 45 0.00099 41.7 3.6 33 241-273 270-307 (1419)
198 PRK13181 hisH imidazole glycer 29.1 46 0.001 31.9 2.8 35 241-275 36-81 (199)
199 cd06309 PBP1_YtfQ_like Peripla 28.9 92 0.002 30.1 4.8 86 174-275 2-89 (273)
200 cd01740 GATase1_FGAR_AT Type 1 28.8 45 0.00098 33.2 2.7 35 241-275 42-91 (238)
201 PRK00726 murG undecaprenyldiph 28.8 43 0.00093 34.2 2.6 58 237-298 247-324 (357)
202 PF02601 Exonuc_VII_L: Exonucl 28.7 2.1E+02 0.0046 29.4 7.7 95 165-270 8-111 (319)
203 cd03137 GATase1_AraC_1 AraC tr 28.5 75 0.0016 29.6 4.0 44 240-283 62-118 (187)
204 PRK15395 methyl-galactoside AB 27.3 1.7E+02 0.0037 30.0 6.7 92 169-275 22-115 (330)
205 PHA03392 egt ecdysteroid UDP-g 27.1 73 0.0016 35.5 4.2 54 241-298 363-432 (507)
206 cd03169 GATase1_PfpI_1 Type 1 26.7 56 0.0012 30.5 2.8 36 241-276 75-118 (180)
207 COG1979 Uncharacterized oxidor 26.6 71 0.0015 34.5 3.7 77 171-263 29-105 (384)
208 COG1570 XseA Exonuclease VII, 25.9 2.7E+02 0.0058 31.0 8.1 102 167-286 131-241 (440)
209 TIGR01382 PfpI intracellular p 25.5 50 0.0011 30.1 2.2 35 242-276 60-102 (166)
210 PRK01293 phosphoribosyl-dephos 25.1 41 0.00088 33.5 1.6 27 369-395 113-139 (207)
211 cd06167 LabA_like LabA_like pr 25.1 70 0.0015 28.7 3.0 34 242-275 99-132 (149)
212 cd03132 GATase1_catalase Type 24.9 58 0.0013 29.1 2.4 36 241-276 61-105 (142)
213 cd03814 GT1_like_2 This family 24.8 3E+02 0.0065 26.8 7.7 56 239-298 263-332 (364)
214 COG0693 ThiJ Putative intracel 24.8 4E+02 0.0087 24.8 8.3 38 240-277 64-110 (188)
215 PRK09548 PTS system ascorbate- 24.7 2.8E+02 0.0061 32.1 8.2 95 169-300 504-600 (602)
216 PF00534 Glycos_transf_1: Glyc 24.5 91 0.002 27.9 3.7 126 166-298 10-158 (172)
217 PRK13143 hisH imidazole glycer 24.2 1.4E+02 0.003 28.8 5.1 36 241-276 37-81 (200)
218 KOG1169|consensus 24.1 1.6E+02 0.0034 34.2 6.1 69 245-313 326-410 (634)
219 CHL00197 carA carbamoyl-phosph 23.6 1E+02 0.0022 33.5 4.3 35 242-276 233-273 (382)
220 cd00861 ProRS_anticodon_short 22.9 3.8E+02 0.0083 21.8 6.9 37 171-208 1-38 (94)
221 COG1810 Uncharacterized protei 22.2 2.4E+02 0.0052 28.7 6.3 109 241-378 54-165 (224)
222 cd03146 GAT1_Peptidase_E Type 22.0 2.9E+02 0.0064 26.9 6.9 36 241-276 79-124 (212)
223 cd03817 GT1_UGDG_like This fam 21.8 1.1E+02 0.0024 29.7 4.0 55 240-298 276-343 (374)
224 cd00858 GlyRS_anticodon GlyRS 21.8 3.7E+02 0.0081 23.6 7.0 62 171-252 26-87 (121)
225 cd01748 GATase1_IGP_Synthase T 21.6 1.5E+02 0.0033 28.3 4.7 34 242-275 36-80 (198)
226 PF02887 PK_C: Pyruvate kinase 21.5 80 0.0017 27.7 2.6 32 361-396 16-47 (117)
227 TIGR00432 arcsn_tRNA_tgt tRNA- 21.2 1.8E+02 0.0038 33.2 5.8 42 333-376 415-458 (540)
228 PF00201 UDPGT: UDP-glucoronos 21.0 1.1E+02 0.0024 33.1 4.1 55 241-299 340-410 (500)
229 cd05563 PTS_IIB_ascorbate PTS_ 21.0 4.6E+02 0.01 21.3 8.5 83 174-294 2-84 (86)
230 cd03139 GATase1_PfpI_2 Type 1 21.0 1E+02 0.0023 28.4 3.4 36 241-276 61-104 (183)
231 PRK10100 DNA-binding transcrip 20.5 2.3E+02 0.005 27.8 5.8 60 243-303 53-132 (216)
No 1
>KOG2178|consensus
Probab=100.00 E-value=1.8e-86 Score=681.45 Aligned_cols=357 Identities=58% Similarity=0.945 Sum_probs=323.0
Q ss_pred CccccccCCCCCCCccCCccc-cccCCceeeeecCCCccccccCCCCcEEEEEecCCChhhHHHHHHHHHHHHhcC-CeE
Q psy5950 126 WPRTRSLNAPSPIQQFGPCGR-IMKNSAMVMTIQDPASQRLTWYKPPLTVLVIKKVRDVSVLQPFVKLVKWLIQEK-SML 203 (511)
Q Consensus 126 ~~~~~~~~~p~p~~~~~p~~~-l~~~~~~~~~~~~~~~~~l~w~~~p~~VlII~K~~~~~~~~~~~el~~~L~~~~-~~~ 203 (511)
|.|.++...+++...++++.+ ++++...++.++++.+|++.|.++|++|+|.+| +|+++.+.++|+++||.+.. .+.
T Consensus 48 ~~~~~~~~~~~~~~~~~sn~~~~~~~~~~~~~~~~~~s~~l~~~~p~~~~lv~K~-~d~s~~~~~~Elv~~ll~~~~~i~ 126 (409)
T KOG2178|consen 48 WVPSLSGDAISGGSSAGSNSRELMSNVAAVRSIQKSLSQRLIWLKPPKNLLVTKK-NDESVLEKFVELVEWLLQTFPNIT 126 (409)
T ss_pred ccccccccccccccccCccchhhhhhhhhhhhccchhhhchhccCCCceEEEEcC-CcHHHHHHHHHHHHHHHhhCCCeE
Confidence 778888888888777888887 899999999999999999999999988777766 58999999999999999887 599
Q ss_pred EEEcCCccccccccC---CCCccccccccccccCCCCCCCCCccEEEEEcCchhHHHHHHHcCCCCCcEEEEeCCCcccc
Q psy5950 204 VYVEQSVMDDTLLAT---NPSFTVVKDKLMTFRDGKDDLTDKIDFIICLGGDGTLLYASLLFQQSVPPVMAFHLGSLGFL 280 (511)
Q Consensus 204 V~ve~~~~~~~~l~~---~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvLGGDGTlL~Aar~~~~~~~PILGINlG~LGFL 280 (511)
||++.+++++..... ++.+...++.+..+.+...++.+.+|+|||||||||+|+|+++|++..||||+|++|+||||
T Consensus 127 V~v~~~~~~~~~f~~~~~~e~~~~~~~i~y~~~e~~~d~~~~~D~iItLGGDGTvL~aS~LFq~~VPPV~sFslGslGFL 206 (409)
T KOG2178|consen 127 VYVEDKVAKDKQFSAGNLDESFGVKERILYWTTEGCDDLPNRFDLIITLGGDGTVLYASSLFQRSVPPVLSFSLGSLGFL 206 (409)
T ss_pred EEechhhhhhhhhcccchhhcccchhceEeeccccccccccceeEEEEecCCccEEEehhhhcCCCCCeEEeecCCcccc
Confidence 999999988653322 22444444444555455678889999999999999999999999999999999999999999
Q ss_pred ccCCcccHHHHHHHHHcCCcEEEEEeeEEEEEEeCCcccccCCCCCCccceeeeEEeecCCCCcEEEEEEEECCEEEEEE
Q psy5950 281 TPFEFENFEDQVTNVLEGHAALTLRSRLRCIIMRKNEETAKDAKPPTNILVLNEVVIDRGPSPYLSNIDLYLDGKLITSV 360 (511)
Q Consensus 281 t~~~~~~~~~~L~~il~G~~~ie~R~rL~v~V~~~~~~~~~~~~~~~~~~ALNEVvI~Rg~~~~~~~i~v~idg~~v~~~ 360 (511)
|+|+++++++.|.++++|+..+..||||+|++++.+...... ...++++||||+|+||++++|+.+++|+||++++++
T Consensus 207 tpf~f~~f~~~l~~v~~~~~~v~lR~RL~C~i~rk~~~~~~~--~~~~~~vLNEvvIdRGpsP~ls~l~ly~d~~~iT~v 284 (409)
T KOG2178|consen 207 TPFPFANFQEQLARVLNGRAAVNLRMRLRCSLKRKDLAEKTH--AASSHYVLNEVVIDRGPSPFLSNLDLYVDDKLITKV 284 (409)
T ss_pred ccccHHHHHHHHHHHhcCcceEeeeeeEEEEEEEeccccccc--ccceEEEeeeEEEccCCCchhcceeEEecCcEEEEE
Confidence 999999999999999999999999999999999876542110 123789999999999999999999999999999999
Q ss_pred ecCeeEEcCCCchhHHHhhcCCCccCCCCCceEEEEcCCCCCCCCCEEeCCCCEEEEEEccCCCCeEEEEEcCCceeecC
Q psy5950 361 QGDGLIVSTPTGSTAYAVAAGASMIHPSVPAIMVTPICPHSLSFRPIVVPAGVELKISVSPDSRNTAWVSFDGRNRQELL 440 (511)
Q Consensus 361 rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~aivITPIcPhsLs~RPiVlp~~~~I~I~v~~~sr~~a~v~iDG~~~~~L~ 440 (511)
+||||||||||||||||+|||||||||+++||++||||||+|+|||||+|++.+|+|+++.++|..+|+++||+.++++.
T Consensus 285 q~DGliVaTPTGSTAYS~sAGGSlvhP~vpAIlvTPICPhSLSFRPIIlPds~~L~I~i~~dsR~~awvSfDG~~r~El~ 364 (409)
T KOG2178|consen 285 QGDGLIVATPTGSTAYSASAGGSLVHPSVPAILVTPICPHSLSFRPIILPDSSELRVEVPLDSRSTAWVSFDGRPRQELS 364 (409)
T ss_pred ecceEEEecCCchhhhHhhcCCceecCCCCeEEEeccCCCcccccceEccCccEEEEEeCccccccceEEecCcchhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEcCceeeEEEecCCCCcHHHHHHhhcCCCcccccccc
Q psy5950 441 HGDSLRVTTSIYPVPSICAQDQIADWFDSLGECLHWNVRKRQKHL 485 (511)
Q Consensus 441 ~Gd~V~I~~S~~~l~lI~~~~~~~~~f~~Lr~KL~Wg~r~~qk~~ 485 (511)
.||+|.|+.|.||++.|+..++..|||+.|.++|+||+|++||+|
T Consensus 365 ~GD~i~I~tS~ypfPti~~s~~~~dWf~sl~~~L~WN~r~rqk~~ 409 (409)
T KOG2178|consen 365 LGDYIDITTSRYPFPTIISSDEESDWFESLARLLNWNVRKRQKPF 409 (409)
T ss_pred CCceEEEEeccCCCceeecCcchhhHHHHHHHHcCCCchhhccCC
Confidence 999999999999999999988889999999999999999999986
No 2
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=100.00 E-value=3.2e-76 Score=626.98 Aligned_cols=315 Identities=45% Similarity=0.828 Sum_probs=270.1
Q ss_pred cccccCCCCcEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccC--CCCCCC
Q psy5950 163 QRLTWYKPPLTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRD--GKDDLT 240 (511)
Q Consensus 163 ~~l~w~~~p~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~--~~~~~~ 240 (511)
++|+|.++|++|+||.|+.++++.+.+.++++||++.+++.|+++.......... ...+.. ...+.. ...++.
T Consensus 186 ~~l~w~~~p~~VgIV~n~~k~~a~el~~~I~~~L~~~~gi~V~ve~~~a~~l~~~-~~~~~~----~~~~~~~~~~~~l~ 260 (508)
T PLN02935 186 ISLKWESDPQTVLIITKPNSTSVRVLCAEMVRWLREQKGLNIYVEPRVKKELLSE-SSYFNF----VQTWEDEKEILLLH 260 (508)
T ss_pred EEeeecCCCCEEEEEecCCCHHHHHHHHHHHHHHHhcCCCEEEEechhhhhhccc-cccccc----cccccccchhhhcc
Confidence 4789999999999999999999999999999999855688999987544321100 000000 000000 011234
Q ss_pred CCccEEEEEcCchhHHHHHHHcCCCCCcEEEEeCCCccccccCCcccHHHHHHHHHcCCcEEEEEeeEEEEEEeCCcccc
Q psy5950 241 DKIDFIICLGGDGTLLYASLLFQQSVPPVMAFHLGSLGFLTPFEFENFEDQVTNVLEGHAALTLRSRLRCIIMRKNEETA 320 (511)
Q Consensus 241 ~~~DlVIvLGGDGTlL~Aar~~~~~~~PILGINlG~LGFLt~~~~~~~~~~L~~il~G~~~ie~R~rL~v~V~~~~~~~~ 320 (511)
.++|+||+||||||||+|+|.+....+||||||+|+||||++++++++++.|+++++|+|.+++|+||+|.+.+++....
T Consensus 261 ~~~DlVIsiGGDGTlL~Aar~~~~~~iPILGIN~G~LGFLt~i~~~e~~~~Le~il~G~y~Ie~R~~L~~~v~~~~~~~~ 340 (508)
T PLN02935 261 TKVDLVITLGGDGTVLWAASMFKGPVPPVVPFSMGSLGFMTPFHSEQYRDCLDAILKGPISITLRHRLQCHIIRDAAKNE 340 (508)
T ss_pred cCCCEEEEECCcHHHHHHHHHhccCCCcEEEEeCCCcceecccCHHHHHHHHHHHHcCCceEEEEeEEEEEEEcCCceec
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999886543210
Q ss_pred cCCCCCCccceeeeEEeecCCCCcEEEEEEEECCEEEEEEecCeeEEcCCCchhHHHhhcCCCccCCCCCceEEEEcCCC
Q psy5950 321 KDAKPPTNILVLNEVVIDRGPSPYLSNIDLYLDGKLITSVQGDGLIVSTPTGSTAYAVAAGASMIHPSVPAIMVTPICPH 400 (511)
Q Consensus 321 ~~~~~~~~~~ALNEVvI~Rg~~~~~~~i~v~idg~~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~aivITPIcPh 400 (511)
. .....++|||||+|.|+..++|+.++++|||+++++|+||||||||||||||||||||||||||++++|+|||||||
T Consensus 341 ~--~~~~~~~ALNEvvI~rg~~~~~i~l~V~Idg~~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~l~~ivlTPIcPH 418 (508)
T PLN02935 341 Y--ETEEPILVLNEVTIDRGISSFLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPH 418 (508)
T ss_pred c--cccccceeccceEEecCCCceEEEEEEEECCEeEEEEECCcEEEecCccHHHHHHhcCCcccCCCCCeEEEEecCCC
Confidence 0 01124689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEeCCCCEEEEEEccCCCCeEEEEEcCCceeecCCCCEEEEEEcCceeeEEEecCCCCcHHHHHHhhcCCCccc
Q psy5950 401 SLSFRPIVVPAGVELKISVSPDSRNTAWVSFDGRNRQELLHGDSLRVTTSIYPVPSICAQDQIADWFDSLGECLHWNVRK 480 (511)
Q Consensus 401 sLs~RPiVlp~~~~I~I~v~~~sr~~a~v~iDG~~~~~L~~Gd~V~I~~S~~~l~lI~~~~~~~~~f~~Lr~KL~Wg~r~ 480 (511)
+|++||||||++++|+|++....+..+++++||+....|.+||+|.|++|++++++|++.++.++||++||+||+||.|.
T Consensus 419 sLs~RPIVlp~~s~I~I~v~~~~~~~a~lsiDGq~~~~L~~GD~V~I~kS~~~v~lV~l~~~~~~Ff~~Lr~KL~Wg~R~ 498 (508)
T PLN02935 419 SLSFRPLILPEYVTIRVQVPFNSRGQAWASFDGKDRKQLSAGDALVCSMAPWPVPTACQVESTNDFLRSIHDGLHWNLRK 498 (508)
T ss_pred cCCCCCeEECCCCEEEEEEccCCCCceEEEEcCCcceecCCCCEEEEEECCCceEEEeeCCCCCCHHHHHHHHcCCCccc
Confidence 99999999999999999987545445899999999999999999999999999999999766689999999999999999
Q ss_pred cccc
Q psy5950 481 RQKH 484 (511)
Q Consensus 481 ~qk~ 484 (511)
+|+.
T Consensus 499 rq~~ 502 (508)
T PLN02935 499 TQSF 502 (508)
T ss_pred cccC
Confidence 9864
No 3
>PLN02727 NAD kinase
Probab=100.00 E-value=1.8e-75 Score=648.57 Aligned_cols=318 Identities=49% Similarity=0.882 Sum_probs=276.1
Q ss_pred eecCCCcc--ccccCCCCcEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccc-
Q psy5950 156 TIQDPASQ--RLTWYKPPLTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTF- 232 (511)
Q Consensus 156 ~~~~~~~~--~l~w~~~p~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~- 232 (511)
+.+.|++| +|.|.++|++||||+|+++ ++.+.+.+|++||.++++++|++|+..++.. .....|.. ...|
T Consensus 661 ~~~~~s~~~~~l~W~~p~rtVgIV~K~~~-ea~~~~~eL~~~L~~~~gi~V~VE~~~a~~l--~~~~~~~~----~~~~~ 733 (986)
T PLN02727 661 AFTHPSTQQQMLMWKSTPKTVLLLKKLGQ-ELMEEAKEVASFLYHQEKMNVLVEPDVHDIF--ARIPGFGF----VQTFY 733 (986)
T ss_pred cccCcchhceeeecCCCCCEEEEEcCCcH-HHHHHHHHHHHHHHhCCCeEEEEecchHHHh--hccccccc----cceec
Confidence 34556544 6899999999999999987 7999999999999977689999998866531 11111110 0111
Q ss_pred cCCCCCCCCCccEEEEEcCchhHHHHHHHcCCCCCcEEEEeCCCccccccCCcccHHHHHHHHHcCCcEE-----EEEee
Q psy5950 233 RDGKDDLTDKIDFIICLGGDGTLLYASLLFQQSVPPVMAFHLGSLGFLTPFEFENFEDQVTNVLEGHAAL-----TLRSR 307 (511)
Q Consensus 233 ~~~~~~~~~~~DlVIvLGGDGTlL~Aar~~~~~~~PILGINlG~LGFLt~~~~~~~~~~L~~il~G~~~i-----e~R~r 307 (511)
....+++.+++|+||+||||||||+|+|++....+||||||+|+||||++++++++++.|+++++|+|.+ ++|++
T Consensus 734 ~~~~~el~~~~DLVIvLGGDGTlLrAar~~~~~~iPILGINlGrLGFLTdi~~ee~~~~L~~Il~G~y~i~~~~ie~R~~ 813 (986)
T PLN02727 734 SQDTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVVSFNLGSLGFLTSHYFEDFRQDLRQVIHGNNTLDGVYITLRMR 813 (986)
T ss_pred ccchhhcccCCCEEEEECCcHHHHHHHHHhcCCCCCEEEEeCCCccccccCCHHHHHHHHHHHHcCCccccccccceeeE
Confidence 1122345567999999999999999999999999999999999999999999999999999999999966 89999
Q ss_pred EEEEEEeCCcccccCCCCCCccceeeeEEeecCCCCcEEEEEEEECCEEEEEEecCeeEEcCCCchhHHHhhcCCCccCC
Q psy5950 308 LRCIIMRKNEETAKDAKPPTNILVLNEVVIDRGPSPYLSNIDLYLDGKLITSVQGDGLIVSTPTGSTAYAVAAGASMIHP 387 (511)
Q Consensus 308 L~v~V~~~~~~~~~~~~~~~~~~ALNEVvI~Rg~~~~~~~i~v~idg~~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P 387 (511)
|+|.+.++++... ...++|||||+|.|+..++|+.++|||||+++++|+||||||||||||||||||||||||||
T Consensus 814 L~~~V~r~g~~i~-----~~~~~ALNEVVI~Rg~~~~mi~ieVyIDg~~l~tyrgDGLIVSTPTGSTAYSLSAGGPIVhP 888 (986)
T PLN02727 814 LRCEIFRNGKAMP-----GKVFDVLNEVVVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHP 888 (986)
T ss_pred EEEEEecCCcccc-----cccceEEEEEEEecCCCccEEEEEEEECCEEeEEeecceEEEECCCchHHhHhhcCCceeCC
Confidence 9999987653311 12457999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEcCCCCCCCCCEEeCCCCEEEEEEccCCCCeEEEEEcCCceeecCCCCEEEEEEcCceeeEEEecCCCCcHH
Q psy5950 388 SVPAIMVTPICPHSLSFRPIVVPAGVELKISVSPDSRNTAWVSFDGRNRQELLHGDSLRVTTSIYPVPSICAQDQIADWF 467 (511)
Q Consensus 388 ~v~aivITPIcPhsLs~RPiVlp~~~~I~I~v~~~sr~~a~v~iDG~~~~~L~~Gd~V~I~~S~~~l~lI~~~~~~~~~f 467 (511)
++++|+|||||||+|++||||||++++|+|++..+.+..+++++||+....|.+||+|.|++|++++++|++.+...+||
T Consensus 889 ~v~aIvITPIcPHSLs~RPIVLp~ds~I~IkI~~~sr~~a~Ls~DGq~~~~L~~GD~I~Ir~S~~~v~lVr~~~~~~dFf 968 (986)
T PLN02727 889 NVPCMLFTPICPHSLSFRPVILPDSARLELKIPDDARSNAWVSFDGKRRQQLSRGDSVRISMSQHPLPTVNKSDQTGDWF 968 (986)
T ss_pred CCCeEEEEecCcccCCCCCEEECCCCeEEEEEccCCCCceEEEECCCeeeecCCCCEEEEEECCceEEEEEeCCCCCCHH
Confidence 99999999999999999999999999999999766554689999999999999999999999999999999876445899
Q ss_pred HHHHhhcCCCcccccccc
Q psy5950 468 DSLGECLHWNVRKRQKHL 485 (511)
Q Consensus 468 ~~Lr~KL~Wg~r~~qk~~ 485 (511)
++||+||+||.+.+||+|
T Consensus 969 ~~LR~KL~W~~r~~Qk~l 986 (986)
T PLN02727 969 RSLIRCLNWNERLDQKAL 986 (986)
T ss_pred HHHHHHhCCCcccccCCC
Confidence 999999999999999986
No 4
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=1.2e-73 Score=581.07 Aligned_cols=300 Identities=28% Similarity=0.407 Sum_probs=258.5
Q ss_pred cEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCcccc-ccccccccCCCCCCCCCccEEEEEc
Q psy5950 172 LTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVV-KDKLMTFRDGKDDLTDKIDFIICLG 250 (511)
Q Consensus 172 ~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~-~~~l~~~~~~~~~~~~~~DlVIvLG 250 (511)
++|+|+.|+.++++.+.+.++++||.+ .++.+++++..++...... . .... ++..... ...++.+++|++|+||
T Consensus 2 ~~igiv~n~~~~~~~~~~~~l~~~L~~-~g~~v~~~~~~~~~~~~~~-~-~~~~~~~~~~~~--~~~~~~~~~Dlvi~iG 76 (305)
T PRK02649 2 PKAGIIYNDGKPLAVRTAEELQDKLEA-AGWEVVRASSSGGILGYAN-P-DQPVCHTGIDQL--VPPGFDSSMKFAIVLG 76 (305)
T ss_pred CEEEEEEcCCCHHHHHHHHHHHHHHHH-CCCEEEEecchhhhcCccc-c-cccccccccccc--ChhhcccCcCEEEEEe
Confidence 479999999999999999999999985 5678888765333210000 0 0000 0000000 0123345789999999
Q ss_pred CchhHHHHHHHcCCCCCcEEEEeCCCccccccCCcccHHHHHHHHHcCCcEEEEEeeEEEEEEeCCcccccCCCCCCccc
Q psy5950 251 GDGTLLYASLLFQQSVPPVMAFHLGSLGFLTPFEFENFEDQVTNVLEGHAALTLRSRLRCIIMRKNEETAKDAKPPTNIL 330 (511)
Q Consensus 251 GDGTlL~Aar~~~~~~~PILGINlG~LGFLt~~~~~~~~~~L~~il~G~~~ie~R~rL~v~V~~~~~~~~~~~~~~~~~~ 330 (511)
||||||+|+|.+...++||||||+|+||||+++++++++++|+++++|+|.+++|+||+|.+.++++. ....+
T Consensus 77 GDGTlL~aar~~~~~~iPilGIN~G~lGFLt~~~~~~~~~~l~~l~~g~y~ie~r~~L~~~v~~~~~~-------~~~~~ 149 (305)
T PRK02649 77 GDGTVLSAARQLAPCGIPLLTINTGHLGFLTEAYLNQLDEAIDQVLAGQYTIEERTMLTVSVMRGDQL-------RWEAL 149 (305)
T ss_pred CcHHHHHHHHHhcCCCCcEEEEeCCCCcccccCCHHHHHHHHHHHHcCCcEEEEeeeEEEEEEECCcc-------eeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999865432 12357
Q ss_pred eeeeEEeecCCCCcEEEEEEEECCEEEEEEecCeeEEcCCCchhHHHhhcCCCccCCCCCceEEEEcCCCCCCCCCEEeC
Q psy5950 331 VLNEVVIDRGPSPYLSNIDLYLDGKLITSVQGDGLIVSTPTGSTAYAVAAGASMIHPSVPAIMVTPICPHSLSFRPIVVP 410 (511)
Q Consensus 331 ALNEVvI~Rg~~~~~~~i~v~idg~~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~aivITPIcPhsLs~RPiVlp 410 (511)
||||++|.|+..++|+++++++||+++.+|+||||||||||||||||||||||||+|++++|+|||||||+|++||+|+|
T Consensus 150 ALNevvi~~~~~~~~~~~~v~id~~~~~~~~~DGlIVsTPTGSTAYslSAGGPIv~P~~~~~~itPI~Phsl~~RplVlp 229 (305)
T PRK02649 150 SLNEMVLHREPLTSMCHFEIAIGRHAPVDIAADGVILSTPTGSTAYSLSAGGPVITPDVPVLQLTPICPHSLASRALVFS 229 (305)
T ss_pred eeeeeeeecCCCccEEEEEEEECCEEEEEEecCeEEEeCCCcHHHHHhhCCCcccCCCCCeEEEEecCcCCCCCCCEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEccCCCCeEEEEEcCCceeecCCCCEEEEEEcCceeeEEEecCCCCcHHHHHHhhcCCCcccccccccc
Q psy5950 411 AGVELKISVSPDSRNTAWVSFDGRNRQELLHGDSLRVTTSIYPVPSICAQDQIADWFDSLGECLHWNVRKRQKHLDE 487 (511)
Q Consensus 411 ~~~~I~I~v~~~sr~~a~v~iDG~~~~~L~~Gd~V~I~~S~~~l~lI~~~~~~~~~f~~Lr~KL~Wg~r~~qk~~~~ 487 (511)
++++|+|++... ..+.+++|||....+++||+|.|++|++++++|++++ ++||++||+||+||.+..||++..
T Consensus 230 ~~~~I~i~~~~~--~~~~l~~DG~~~~~l~~gd~i~I~~s~~~~~lv~~~~--~~f~~~Lr~KL~wg~~~~~~~~~~ 302 (305)
T PRK02649 230 DSEPVTVFPATP--ERLVMVVDGNAGCYVWPEDRVLIRRSPYPVRFIRLQD--PEFFRVLREKLGWGLPHIAKPTSV 302 (305)
T ss_pred CCCEEEEEecCC--CcEEEEEecceeEecCCCCEEEEEECCCEEEEEEcCC--CCHHHHHHHHcCCCCCcccCCCcc
Confidence 999999987642 3589999999999999999999999999999999876 799999999999999999999975
No 5
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=7e-73 Score=573.38 Aligned_cols=291 Identities=27% Similarity=0.513 Sum_probs=252.9
Q ss_pred CCCcEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccc-cccccCCCCccccccccccccCCCCCCCCCccEEE
Q psy5950 169 KPPLTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMD-DTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFII 247 (511)
Q Consensus 169 ~~p~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~-~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVI 247 (511)
+++++|+|+.|++++++.+.+.++++||.+ +++.+++++.... ...... .... . .. ....++.+++|+||
T Consensus 3 ~~~~~i~ii~~~~~~~~~~~~~~l~~~L~~-~g~~v~~~~~~~~~~~~~~~--~~~~----~-~~-~~~~~~~~~~D~vi 73 (296)
T PRK04539 3 SPFHNIGIVTRPNTPDIQDTAHTLITFLKQ-HGFTVYLDEVGIKEGCIYTQ--DTVG----C-HI-VNKTELGQYCDLVA 73 (296)
T ss_pred CCCCEEEEEecCCCHHHHHHHHHHHHHHHH-CCCEEEEecccccccchhcc--cccc----c-cc-cchhhcCcCCCEEE
Confidence 457889999999999999999999999986 5778888753221 000000 0000 0 00 01133445789999
Q ss_pred EEcCchhHHHHHHHcCCCCCcEEEEeCCCccccccCCcccHHHHHHHHHcCCcEEEEEeeEEEEEEeCCcccccCCCCCC
Q psy5950 248 CLGGDGTLLYASLLFQQSVPPVMAFHLGSLGFLTPFEFENFEDQVTNVLEGHAALTLRSRLRCIIMRKNEETAKDAKPPT 327 (511)
Q Consensus 248 vLGGDGTlL~Aar~~~~~~~PILGINlG~LGFLt~~~~~~~~~~L~~il~G~~~ie~R~rL~v~V~~~~~~~~~~~~~~~ 327 (511)
+||||||||+|+|.+...++||||||+|+||||+++++++++++|+++++|+|.+++|++|++.+.+++.. ..
T Consensus 74 ~lGGDGT~L~aa~~~~~~~~PilGIN~G~lGFL~~~~~~~~~~~l~~i~~g~~~~~~r~~l~~~v~~~~~~-------~~ 146 (296)
T PRK04539 74 VLGGDGTFLSVAREIAPRAVPIIGINQGHLGFLTQIPREYMTDKLLPVLEGKYLAEERILIEAALIREGKT-------AE 146 (296)
T ss_pred EECCcHHHHHHHHHhcccCCCEEEEecCCCeEeeccCHHHHHHHHHHHHcCCceEEEeeeEEEEEEECCee-------ee
Confidence 99999999999999998999999999999999999999999999999999999999999999998765543 22
Q ss_pred ccceeeeEEeecCCCCcEEEEEEEECCEEEEEEecCeeEEcCCCchhHHHhhcCCCccCCCCCceEEEEcCCCCCCCCCE
Q psy5950 328 NILVLNEVVIDRGPSPYLSNIDLYLDGKLITSVQGDGLIVSTPTGSTAYAVAAGASMIHPSVPAIMVTPICPHSLSFRPI 407 (511)
Q Consensus 328 ~~~ALNEVvI~Rg~~~~~~~i~v~idg~~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~aivITPIcPhsLs~RPi 407 (511)
.++||||++|.|+..++|++++++|||+++++|+||||||||||||||||||||||||+|++++|++||||||+|++||+
T Consensus 147 ~~~ALNdvvi~~~~~~~~~~~~v~id~~~~~~~~~DGlIVsTPTGSTAYslSAGGPIv~P~~~~~~itPI~Phsl~~rpl 226 (296)
T PRK04539 147 RALALNDAVLSRGGAGQMIEFEVFVNREFVYTQRSDGLIVSTPTGSTAYSLAAGGPIMQAGLHAFTLVPICPQSMTNRPI 226 (296)
T ss_pred eeeeehhhhhccCCcCceEEEEEEECCEEEEEEecCeEEEECCCcHHHHHhhCCCceeCCCCCeEEEEecCcCcccCCCE
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCEEEEEEccCCCCeEEEEEcCCceeecCCCCEEEEEEcCceeeEEEecCCCCcHHHHHHhhcCCCcc
Q psy5950 408 VVPAGVELKISVSPDSRNTAWVSFDGRNRQELLHGDSLRVTTSIYPVPSICAQDQIADWFDSLGECLHWNVR 479 (511)
Q Consensus 408 Vlp~~~~I~I~v~~~sr~~a~v~iDG~~~~~L~~Gd~V~I~~S~~~l~lI~~~~~~~~~f~~Lr~KL~Wg~r 479 (511)
|+|++++|+|++.. . ..+.+++|||....+.+||+|.|++|++++++|++.+ ++||+.||+||+||.+
T Consensus 227 Vl~~~~~i~i~~~~-~-~~~~l~~DG~~~~~l~~~d~i~i~~s~~~~~li~~~~--~~f~~~Lr~KL~w~~~ 294 (296)
T PRK04539 227 AIPDTSEIEILVTQ-G-GDARVHFDGQTHIDVQNLDRITIRRYRNPLRILHPTD--YQYFKTLRQKLHWGEQ 294 (296)
T ss_pred EECCCCEEEEEEcC-C-CcEEEEEcCCceeecCCCCEEEEEECCCceEEEEcCC--CcHHHHHHHHhcCCcc
Confidence 99999999999864 3 3589999999999999999999999999999998866 7999999999999865
No 6
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=1.2e-72 Score=570.69 Aligned_cols=290 Identities=28% Similarity=0.485 Sum_probs=248.4
Q ss_pred EEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEEcCc
Q psy5950 173 TVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICLGGD 252 (511)
Q Consensus 173 ~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvLGGD 252 (511)
+|+|+.|+.++++.+.+.++++||.+ .++++++++..+... .....+.. ....+ ...+++.+.+|+||+||||
T Consensus 2 ~igii~~~~~~~~~~~~~~i~~~l~~-~g~~v~~~~~~~~~~--~~~~~~~~---~~~~~-~~~~~~~~~~dlvi~lGGD 74 (292)
T PRK01911 2 KIAIFGQTYQESASPYIQELFDELEE-RGAEVLIEEKFLDFL--KQDLKFHP---SYDTF-SDNEELDGSADMVISIGGD 74 (292)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHHHHH-CCCEEEEecchhhhh--cccccccc---ccccc-cchhhcccCCCEEEEECCc
Confidence 59999999999999999999999985 578888887543321 00000000 00000 0013344578999999999
Q ss_pred hhHHHHHHHcCCCCCcEEEEeCCCccccccCCcccHHHHHHHHHcCCcEEEEEeeEEEEEEeCCcccccCCCCCCcccee
Q psy5950 253 GTLLYASLLFQQSVPPVMAFHLGSLGFLTPFEFENFEDQVTNVLEGHAALTLRSRLRCIIMRKNEETAKDAKPPTNILVL 332 (511)
Q Consensus 253 GTlL~Aar~~~~~~~PILGINlG~LGFLt~~~~~~~~~~L~~il~G~~~ie~R~rL~v~V~~~~~~~~~~~~~~~~~~AL 332 (511)
||||+|+|.+...++||||||+|+||||+++++++++++|+++++|+|.+++|+||+|.+.++ .. ...++||
T Consensus 75 GT~L~aa~~~~~~~~PilGIN~G~lGFLt~~~~~~~~~~l~~i~~g~~~i~~r~~L~~~~~~~-~~-------~~~~~al 146 (292)
T PRK01911 75 GTFLRTATYVGNSNIPILGINTGRLGFLATVSKEEIEETIDELLNGDYTIEERSLLQLESNPK-LF-------GELNFAL 146 (292)
T ss_pred HHHHHHHHHhcCCCCCEEEEecCCCCcccccCHHHHHHHHHHHHcCCceEEEEeeEEEEEcCC-cc-------eeeeEEE
Confidence 999999999998999999999999999999999999999999999999999999999996321 11 1235799
Q ss_pred eeEEeecCCCCcEEEEEEEECCEEEEEEecCeeEEcCCCchhHHHhhcCCCccCCCCCceEEEEcCCCCCCCCCEEeCCC
Q psy5950 333 NEVVIDRGPSPYLSNIDLYLDGKLITSVQGDGLIVSTPTGSTAYAVAAGASMIHPSVPAIMVTPICPHSLSFRPIVVPAG 412 (511)
Q Consensus 333 NEVvI~Rg~~~~~~~i~v~idg~~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~aivITPIcPhsLs~RPiVlp~~ 412 (511)
|||+|.|+..++|+.++++|||+++++|+||||||||||||||||||||||||+|++++|++||||||+|++||+|+|++
T Consensus 147 Ndvvi~r~~~~~~i~~~v~idg~~~~~~~~DGlIVsTPTGSTAYslSAGGPIv~P~~~~~~ltPI~Ph~l~~RplVl~~~ 226 (292)
T PRK01911 147 NEIAILKRDTSSMITVHTYLNGEYLNSYWADGLIVATPTGSTGYSLSCGGPIIVPDAKSFVITPIAPHNLNVRPLVIPDD 226 (292)
T ss_pred EEEEEecCCCCcEEEEEEEECCEEEEEEeeceeEECCCCcHHHHHhhCCCcccCCCCCEEEEEecccCccCCCCEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEEccCCCCeEEEEEcCCceeecCCCCEEEEEEcCceeeEEEecCCCCcHHHHHHhhcCCCcccc
Q psy5950 413 VELKISVSPDSRNTAWVSFDGRNRQELLHGDSLRVTTSIYPVPSICAQDQIADWFDSLGECLHWNVRKR 481 (511)
Q Consensus 413 ~~I~I~v~~~sr~~a~v~iDG~~~~~L~~Gd~V~I~~S~~~l~lI~~~~~~~~~f~~Lr~KL~Wg~r~~ 481 (511)
++|+|++.... ..+.+++|||. ..+.+||+|+|++|+++++++++.+ ++||+.||+||+||.++|
T Consensus 227 ~~I~i~~~~~~-~~~~l~~DG~~-~~l~~gd~v~i~~s~~~~~lv~~~~--~~f~~~Lr~KL~w~~~~~ 291 (292)
T PRK01911 227 TEITLEVESRS-DNFLVSLDSRS-ETVDNGTELTIKKADFTIKLVELNN--HSFLKTLRNKLLWGEDKR 291 (292)
T ss_pred CEEEEEEecCC-CceEEEEeCCe-eecCCCCEEEEEECCCeEEEEEeCC--CcHHHHHHHHcCCCCcCC
Confidence 99999986533 34789999999 5899999999999999999999866 799999999999998765
No 7
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=3.9e-72 Score=565.80 Aligned_cols=278 Identities=30% Similarity=0.488 Sum_probs=247.4
Q ss_pred CCcEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEE
Q psy5950 170 PPLTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICL 249 (511)
Q Consensus 170 ~p~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvL 249 (511)
++++|+|+.|+.+ ++.+.+.++++||++ .++.+++++..+..... . .+ ..+++.+++|+||++
T Consensus 9 ~~~~i~ii~~~~~-~~~~~~~~i~~~l~~-~g~~~~~~~~~~~~~~~---~----------~~--~~~~~~~~~Dlvi~i 71 (287)
T PRK14077 9 NIKKIGLVTRPNV-SLDKEILKLQKILSI-YKVEILLEKESAEILDL---P----------GY--GLDELFKISDFLISL 71 (287)
T ss_pred cCCEEEEEeCCcH-HHHHHHHHHHHHHHH-CCCEEEEecchhhhhcc---c----------cc--chhhcccCCCEEEEE
Confidence 4778999999875 899999999999986 57888888754332100 0 00 012334578999999
Q ss_pred cCchhHHHHHHHcCCCCCcEEEEeCCCccccccCCcccHHHHHHHHHcCCcEEEEEeeEEEEEEeCCcccccCCCCCCcc
Q psy5950 250 GGDGTLLYASLLFQQSVPPVMAFHLGSLGFLTPFEFENFEDQVTNVLEGHAALTLRSRLRCIIMRKNEETAKDAKPPTNI 329 (511)
Q Consensus 250 GGDGTlL~Aar~~~~~~~PILGINlG~LGFLt~~~~~~~~~~L~~il~G~~~ie~R~rL~v~V~~~~~~~~~~~~~~~~~ 329 (511)
|||||||+|+|.+...++||||||+|+||||+++++++++++|+++++|+|.+++|++|+|.+.++++. ....
T Consensus 72 GGDGT~L~aa~~~~~~~~PilGIN~G~lGFLt~~~~~~~~~~l~~i~~g~y~ie~r~~L~~~v~~~~~~-------~~~~ 144 (287)
T PRK14077 72 GGDGTLISLCRKAAEYDKFVLGIHAGHLGFLTDITVDEAEKFFQAFFQGEFEIEKPYMLSVFLEKKQGK-------ILEK 144 (287)
T ss_pred CCCHHHHHHHHHhcCCCCcEEEEeCCCcccCCcCCHHHHHHHHHHHHcCCCeEEEEEEEEEEEEeCCce-------EEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999765433 1235
Q ss_pred ceeeeEEeecCCCCcEEEEEEEECCEEEEEEecCeeEEcCCCchhHHHhhcCCCccCCCCCceEEEEcCCCCCCCCCEEe
Q psy5950 330 LVLNEVVIDRGPSPYLSNIDLYLDGKLITSVQGDGLIVSTPTGSTAYAVAAGASMIHPSVPAIMVTPICPHSLSFRPIVV 409 (511)
Q Consensus 330 ~ALNEVvI~Rg~~~~~~~i~v~idg~~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~aivITPIcPhsLs~RPiVl 409 (511)
+||||++|.|+..++|+++++++||+++++|+||||||||||||||||||||||||+|++++|+|||||||+|+.||+|+
T Consensus 145 ~AlNevvi~~~~~~~~~~~~v~id~~~~~~~~~DGlIVSTPTGSTAYslSAGGPIv~P~~~~~~ltPI~Phsl~~rpiVl 224 (287)
T PRK14077 145 LAFNDVVISKNNQASMAHIEAFLNEKYFNEYFGDGVIVATPAGSTAYNMSANGPIIYPLSQVFILTPVCSHSLTQRPIVL 224 (287)
T ss_pred EEeeeeeeccCCCccEEEEEEEECCEEEEEEEcCEEEEeCCCchhHhHhhcCCcccCCCCCeEEEEecccccccCCCEEE
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEccCCCCeEEEEEcCCceeecCCCCEEEEEEcCceeeEEEecCCCCcHHHHHHhhcCCC
Q psy5950 410 PAGVELKISVSPDSRNTAWVSFDGRNRQELLHGDSLRVTTSIYPVPSICAQDQIADWFDSLGECLHWN 477 (511)
Q Consensus 410 p~~~~I~I~v~~~sr~~a~v~iDG~~~~~L~~Gd~V~I~~S~~~l~lI~~~~~~~~~f~~Lr~KL~Wg 477 (511)
|++++|+|++.. .+.+++||+....+++||+|.|++|+++++++++.+ ++||+.||+||+|+
T Consensus 225 ~~~~~I~i~~~~----~~~l~~DG~~~~~l~~~d~i~I~~s~~~~~lv~~~~--~~f~~~Lr~KL~w~ 286 (287)
T PRK14077 225 PKGFEVEFKTKS----DCILCIDGQDRYKMNDFKSIKVGLSDKNVALIRHKN--RDYFQILKEKLHWG 286 (287)
T ss_pred CCCCEEEEEECC----CEEEEEcCCeeEecCCCCEEEEEECCCEEEEEECCC--CCHHHHHHHHhCCC
Confidence 999999998642 489999999999999999999999999999998865 79999999999997
No 8
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=1.3e-71 Score=563.15 Aligned_cols=287 Identities=30% Similarity=0.498 Sum_probs=253.2
Q ss_pred CCcEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEE
Q psy5950 170 PPLTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICL 249 (511)
Q Consensus 170 ~p~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvL 249 (511)
..++|+||.|+.++++.+.+.++++||++ .++.+++++..+...... .. .. ...+++.+++|+||+|
T Consensus 4 ~~~~i~iv~~~~~~~~~~~~~~i~~~l~~-~g~~v~~~~~~~~~~~~~---~~-------~~--~~~~~~~~~~d~vi~l 70 (292)
T PRK03378 4 HFKCIGIVGHPRHPTALTTHEMLYHWLTS-KGYEVIVEQQIAHELQLK---NV-------KT--GTLAEIGQQADLAIVV 70 (292)
T ss_pred cCCEEEEEEeCCCHHHHHHHHHHHHHHHH-CCCEEEEecchhhhcCcc---cc-------cc--cchhhcCCCCCEEEEE
Confidence 36789999999999999999999999986 578888887543321000 00 00 0113344578999999
Q ss_pred cCchhHHHHHHHcCCCCCcEEEEeCCCccccccCCcccHHHHHHHHHcCCcEEEEEeeEEEEEEeCCcccccCCCCCCcc
Q psy5950 250 GGDGTLLYASLLFQQSVPPVMAFHLGSLGFLTPFEFENFEDQVTNVLEGHAALTLRSRLRCIIMRKNEETAKDAKPPTNI 329 (511)
Q Consensus 250 GGDGTlL~Aar~~~~~~~PILGINlG~LGFLt~~~~~~~~~~L~~il~G~~~ie~R~rL~v~V~~~~~~~~~~~~~~~~~ 329 (511)
|||||||+|+|.+...++||||||+|+||||+++++++++++|+++++|+|.+++|++|+|++.++++. ...+
T Consensus 71 GGDGT~L~aa~~~~~~~~Pilgin~G~lGFl~~~~~~~~~~~l~~i~~g~~~i~~r~~L~~~v~~~~~~-------~~~~ 143 (292)
T PRK03378 71 GGDGNMLGAARVLARYDIKVIGINRGNLGFLTDLDPDNALQQLSDVLEGHYISEKRFLLEAQVCRHGQQ-------KRIS 143 (292)
T ss_pred CCcHHHHHHHHHhcCCCCeEEEEECCCCCcccccCHHHHHHHHHHHHcCCceEEEEEEEEEEEEeCCce-------EEeE
Confidence 999999999999998899999999999999999999999999999999999999999999999865433 1245
Q ss_pred ceeeeEEeecCCCCcEEEEEEEECCEEEEEEecCeeEEcCCCchhHHHhhcCCCccCCCCCceEEEEcCCCCCCCCCEEe
Q psy5950 330 LVLNEVVIDRGPSPYLSNIDLYLDGKLITSVQGDGLIVSTPTGSTAYAVAAGASMIHPSVPAIMVTPICPHSLSFRPIVV 409 (511)
Q Consensus 330 ~ALNEVvI~Rg~~~~~~~i~v~idg~~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~aivITPIcPhsLs~RPiVl 409 (511)
+||||++|.|+..++|+++++++||+++++|+||||||||||||||||||||||||+|++++|+|||||||+|++||+|+
T Consensus 144 ~aLNdvvi~~~~~~~~i~~~v~idg~~~~~~~~DGlIvsTptGSTAYslSAGGPii~P~~~~~~itPI~Phsl~~rplVl 223 (292)
T PRK03378 144 TAINEVVLHPGKVAHMIEFEVYIDDNFAFSQRSDGLIISTPTGSTAYSLSAGGPILTPSLDAITLVPMFPHTLSARPLVI 223 (292)
T ss_pred EEEEEEEEccCCCccEEEEEEEECCEEEEEEEccEEEEeCCCchHHhHhhcCCceeCCCCCeEEEEecccccCCCCCEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEccCCCCeEEEEEcCCceeecCCCCEEEEEEcCceeeEEEecCCCCcHHHHHHhhcCCCcc
Q psy5950 410 PAGVELKISVSPDSRNTAWVSFDGRNRQELLHGDSLRVTTSIYPVPSICAQDQIADWFDSLGECLHWNVR 479 (511)
Q Consensus 410 p~~~~I~I~v~~~sr~~a~v~iDG~~~~~L~~Gd~V~I~~S~~~l~lI~~~~~~~~~f~~Lr~KL~Wg~r 479 (511)
|++++|+|++.... ..+.+++||+....+++||+|.|++|++++++|++++ ++||+.||+||+||..
T Consensus 224 ~~~~~i~i~~~~~~-~~~~l~~DG~~~~~l~~gd~i~i~~s~~~~~lv~~~~--~~f~~~Lr~KL~w~~~ 290 (292)
T PRK03378 224 DSSSTIRLKFSPNR-SDLEISCDSQIALPIQPGEEVLIRRSDYHLNLIHPKD--YSYFNTLRTKLGWSKK 290 (292)
T ss_pred CCCCEEEEEEccCC-CcEEEEECCceEEEcCCCcEEEEEECCCEEEEEEcCC--CCHHHHHHHHcCCCCC
Confidence 99999999986533 4589999999999999999999999999999999876 7999999999999854
No 9
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=2.2e-71 Score=564.66 Aligned_cols=299 Identities=26% Similarity=0.369 Sum_probs=254.7
Q ss_pred CCCcEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEE
Q psy5950 169 KPPLTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIIC 248 (511)
Q Consensus 169 ~~p~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIv 248 (511)
.++++|+||.|+.++++.+.+.+|++||.+ .++.+++++..+...... ...+.. ...+..+. ..+++.+++|+||+
T Consensus 3 ~~~~~I~iv~~~~~~~~~~~~~~l~~~L~~-~g~~v~~~~~~~~~~~~~-~~~~~~-~~~~~~~~-~~~~~~~~~D~vi~ 78 (306)
T PRK03372 3 TASRRVLLVAHTGRDEATEAARRVAKQLGD-AGIGVRVLDAEAVDLGAT-HPAPDD-FRAMEVVD-ADPDAADGCELVLV 78 (306)
T ss_pred CCccEEEEEecCCCHHHHHHHHHHHHHHHH-CCCEEEEeechhhhhccc-cccccc-cccccccc-chhhcccCCCEEEE
Confidence 467899999999999999999999999986 467888876533221000 000000 00000000 01233457899999
Q ss_pred EcCchhHHHHHHHcCCCCCcEEEEeCCCccccccCCcccHHHHHHHHHcCCcEEEEEeeEEEEEEeCCcccccCCCCCCc
Q psy5950 249 LGGDGTLLYASLLFQQSVPPVMAFHLGSLGFLTPFEFENFEDQVTNVLEGHAALTLRSRLRCIIMRKNEETAKDAKPPTN 328 (511)
Q Consensus 249 LGGDGTlL~Aar~~~~~~~PILGINlG~LGFLt~~~~~~~~~~L~~il~G~~~ie~R~rL~v~V~~~~~~~~~~~~~~~~ 328 (511)
||||||||+|+|.+...++||||||+|+||||+++++++++++|+++++|+|.+++|++|+|++.++++. ...
T Consensus 79 lGGDGT~L~aar~~~~~~~PilGIN~G~lGFL~~~~~~~~~~~l~~i~~g~y~i~~R~~L~~~v~~~g~~-------~~~ 151 (306)
T PRK03372 79 LGGDGTILRAAELARAADVPVLGVNLGHVGFLAEAEAEDLDEAVERVVDRDYRVEERMTLDVTVRVGGEI-------VWR 151 (306)
T ss_pred EcCCHHHHHHHHHhccCCCcEEEEecCCCceeccCCHHHHHHHHHHHHcCCceEEEeeeEEEEEEECCEE-------Eee
Confidence 9999999999999999999999999999999999999999999999999999999999999999865543 124
Q ss_pred cceeeeEEeecCCCCcEEEEEEEECCEEEEEEecCeeEEcCCCchhHHHhhcCCCccCCCCCceEEEEcCCCCCCCCCEE
Q psy5950 329 ILVLNEVVIDRGPSPYLSNIDLYLDGKLITSVQGDGLIVSTPTGSTAYAVAAGASMIHPSVPAIMVTPICPHSLSFRPIV 408 (511)
Q Consensus 329 ~~ALNEVvI~Rg~~~~~~~i~v~idg~~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~aivITPIcPhsLs~RPiV 408 (511)
.+||||++|.|+..++|++++|+|||+++++|+||||||||||||||||||||||||+|++++|+|||||||+|+.||+|
T Consensus 152 ~~ALNdvvi~r~~~~~~~~~~v~idg~~~~~~~~DGlIVsTPTGSTAYslSAGGPIv~P~~~~~~itPI~Ph~l~~RplV 231 (306)
T PRK03372 152 GWALNEASLEKADREGMLEVVLEVDGRPVSSFGCDGVLVSTPTGSTAYAFSAGGPVVWPDLEALLVVPLNAHALFARPLV 231 (306)
T ss_pred eeEEEeEEeecCCCCcEEEEEEEECCEEEEEEecCEEEEeCCCchHHHHhhcCCcccCCCCCeEEEEecccccCCCCCeE
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCEEEEEEccCCCCeEEEEEcCCceeecCCCCEEEEEEcCceeeEEEecCCCCcHHHHHHhhcCCCcccc
Q psy5950 409 VPAGVELKISVSPDSRNTAWVSFDGRNRQELLHGDSLRVTTSIYPVPSICAQDQIADWFDSLGECLHWNVRKR 481 (511)
Q Consensus 409 lp~~~~I~I~v~~~sr~~a~v~iDG~~~~~L~~Gd~V~I~~S~~~l~lI~~~~~~~~~f~~Lr~KL~Wg~r~~ 481 (511)
+|++++|+|++....+ .+.+++|||....+++||+|.|++|++++++|++++ ++||++||+||+|..-.+
T Consensus 232 v~~~~~I~i~~~~~~~-~~~l~~DG~~~~~l~~gd~i~i~~s~~~~~lv~~~~--~~f~~~Lr~KL~~~~~~~ 301 (306)
T PRK03372 232 VSPTSTVAVEILADTS-DAVLWCDGRRSVDLPPGARVEVRRGATPVRLARLDS--APFTDRLVRKFRLPVTGW 301 (306)
T ss_pred ECCCCEEEEEEecCCC-cEEEEEcCCeeEecCCCCEEEEEECCCeEEEEEeCC--CCHHHHHHHHcCCCCCcc
Confidence 9999999999865433 589999999999999999999999999999999976 799999999999985443
No 10
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=1.5e-69 Score=548.81 Aligned_cols=288 Identities=32% Similarity=0.526 Sum_probs=252.7
Q ss_pred CcEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEEc
Q psy5950 171 PLTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICLG 250 (511)
Q Consensus 171 p~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvLG 250 (511)
.++|+||.|+.++++.+.+.++.+||++ +++++++++...++. ..+ .. .. ....++.+.+|+||++|
T Consensus 4 ~~~v~iv~~~~k~~a~e~~~~i~~~L~~-~giev~v~~~~~~~~--~~~-~~--------~~-~~~~~~~~~~d~vi~~G 70 (295)
T PRK01231 4 FRNIGLIGRLGSSSVVETLRRLKDFLLD-RGLEVILDEETAEVL--PGH-GL--------QT-VSRKLLGEVCDLVIVVG 70 (295)
T ss_pred CCEEEEEecCCCHHHHHHHHHHHHHHHH-CCCEEEEecchhhhc--Ccc-cc--------cc-cchhhcccCCCEEEEEe
Confidence 5689999999999999999999999986 578888876433211 000 00 00 00123345689999999
Q ss_pred CchhHHHHHHHcCCCCCcEEEEeCCCccccccCCcccHHHHHHHHHcCCcEEEEEeeEEEEEEeCCcccccCCCCCCccc
Q psy5950 251 GDGTLLYASLLFQQSVPPVMAFHLGSLGFLTPFEFENFEDQVTNVLEGHAALTLRSRLRCIIMRKNEETAKDAKPPTNIL 330 (511)
Q Consensus 251 GDGTlL~Aar~~~~~~~PILGINlG~LGFLt~~~~~~~~~~L~~il~G~~~ie~R~rL~v~V~~~~~~~~~~~~~~~~~~ 330 (511)
||||+|++++.+...++||+|||+|+||||+++++++++++|+++++|+|.+++|+||+|.+.++++. ...++
T Consensus 71 GDGt~l~~~~~~~~~~~Pvlgin~G~lGFl~~~~~~~~~~~l~~~~~g~~~i~~r~~L~~~v~~~~~~-------~~~~~ 143 (295)
T PRK01231 71 GDGSLLGAARALARHNVPVLGINRGRLGFLTDIRPDELEFKLAEVLDGHYQEEERFLLEAEVRRGGEV-------IGQGD 143 (295)
T ss_pred CcHHHHHHHHHhcCCCCCEEEEeCCcccccccCCHHHHHHHHHHHHcCCceEEEEEEEEEEEEECCcE-------Eeeee
Confidence 99999999999988899999999999999999999999999999999999999999999999865433 12458
Q ss_pred eeeeEEeecCCCCcEEEEEEEECCEEEEEEecCeeEEcCCCchhHHHhhcCCCccCCCCCceEEEEcCCCCCCCCCEEeC
Q psy5950 331 VLNEVVIDRGPSPYLSNIDLYLDGKLITSVQGDGLIVSTPTGSTAYAVAAGASMIHPSVPAIMVTPICPHSLSFRPIVVP 410 (511)
Q Consensus 331 ALNEVvI~Rg~~~~~~~i~v~idg~~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~aivITPIcPhsLs~RPiVlp 410 (511)
||||++|.|+..++|++++++|||+++++|+||||||||||||||||||||||||+|++++|+|||||||+|+.||||+|
T Consensus 144 ALNevvi~~~~~~~~~~~~v~id~~~~~~~~~DGlivsTptGSTAY~lSAGGpIv~p~~~~~~itPI~ph~l~~rpiVl~ 223 (295)
T PRK01231 144 ALNDVVLHPGKSTRMIEFELYIDGQFVCSQRSDGLIVSTPTGSTAYALSGGGPIMHPKLDAIVLVPMFPHTLSSRPIVVD 223 (295)
T ss_pred EEEEEEEccCCCCcEEEEEEEECCEEEEEEEcceEEEeCCCCchhhhhhcCCceecCCCCeEEEEecCCCccCCCCEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEccCCCCeEEEEEcCCceeecCCCCEEEEEEcCceeeEEEecCCCCcHHHHHHhhcCCCccc
Q psy5950 411 AGVELKISVSPDSRNTAWVSFDGRNRQELLHGDSLRVTTSIYPVPSICAQDQIADWFDSLGECLHWNVRK 480 (511)
Q Consensus 411 ~~~~I~I~v~~~sr~~a~v~iDG~~~~~L~~Gd~V~I~~S~~~l~lI~~~~~~~~~f~~Lr~KL~Wg~r~ 480 (511)
++++|+|++....+..+.+++||+....+.+||+|.|++|+.+++++++.+ .+||++||+||+||.+.
T Consensus 224 ~~~~I~i~~~~~~~~~~~l~~DG~~~~~l~~g~~i~i~~s~~~~~l~~~~~--~~f~~~l~~KL~w~~~~ 291 (295)
T PRK01231 224 GNSEIKIVISKDNRTYPRVSCDGQNSVTLAPGDTVTIRKKPQKLRLIHPLD--YNYYETCRTKLGWGSRL 291 (295)
T ss_pred CCCEEEEEEccCCCCceEEEeCCCceEecCCCCEEEEEECCCeEEEEEcCC--CCHHHHHHHhcCCCCCc
Confidence 999999998654444588999999999999999999999999999998866 79999999999999864
No 11
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=100.00 E-value=1.4e-69 Score=547.95 Aligned_cols=286 Identities=29% Similarity=0.514 Sum_probs=251.9
Q ss_pred CCcEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEE
Q psy5950 170 PPLTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICL 249 (511)
Q Consensus 170 ~p~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvL 249 (511)
..++|+|+.|+.++++.+.+.++++||++ .+++++++........... +. .+ ..+++.+.+|+||++
T Consensus 4 ~~~~v~iv~~~~~~~~~e~~~~i~~~L~~-~g~~v~v~~~~~~~~~~~~---~~-------~~--~~~~~~~~~d~vi~~ 70 (291)
T PRK02155 4 QFKTVALIGRYQTPGIAEPLESLAAFLAK-RGFEVVFEADTARNIGLTG---YP-------AL--TPEEIGARADLAVVL 70 (291)
T ss_pred cCCEEEEEecCCCHHHHHHHHHHHHHHHH-CCCEEEEecchhhhcCccc---cc-------cc--ChhHhccCCCEEEEE
Confidence 46789999999999999999999999985 5788888765433211000 00 00 112334578999999
Q ss_pred cCchhHHHHHHHcCCCCCcEEEEeCCCccccccCCcccHHHHHHHHHcCCcEEEEEeeEEEEEEeCCcccccCCCCCCcc
Q psy5950 250 GGDGTLLYASLLFQQSVPPVMAFHLGSLGFLTPFEFENFEDQVTNVLEGHAALTLRSRLRCIIMRKNEETAKDAKPPTNI 329 (511)
Q Consensus 250 GGDGTlL~Aar~~~~~~~PILGINlG~LGFLt~~~~~~~~~~L~~il~G~~~ie~R~rL~v~V~~~~~~~~~~~~~~~~~ 329 (511)
|||||||+|+|.+...++|+||||+|+||||+++++++++++|+++++|+|.+++|++|+|.+.++++. ...+
T Consensus 71 GGDGt~l~~~~~~~~~~~pilGIn~G~lGFL~~~~~~~~~~~l~~~~~g~~~i~~r~~L~~~v~~~~~~-------~~~~ 143 (291)
T PRK02155 71 GGDGTMLGIGRQLAPYGVPLIGINHGRLGFITDIPLDDMQETLPPMLAGNYEEEERMLLEARVVRDGEP-------IFHA 143 (291)
T ss_pred CCcHHHHHHHHHhcCCCCCEEEEcCCCccccccCCHHHHHHHHHHHHcCCceEEEeEEEEEEEEECCeE-------EEee
Confidence 999999999999988899999999999999999999999999999999999999999999998765433 1245
Q ss_pred ceeeeEEeecCCCCcEEEEEEEECCEEEEEEecCeeEEcCCCchhHHHhhcCCCccCCCCCceEEEEcCCCCCCCCCEEe
Q psy5950 330 LVLNEVVIDRGPSPYLSNIDLYLDGKLITSVQGDGLIVSTPTGSTAYAVAAGASMIHPSVPAIMVTPICPHSLSFRPIVV 409 (511)
Q Consensus 330 ~ALNEVvI~Rg~~~~~~~i~v~idg~~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~aivITPIcPhsLs~RPiVl 409 (511)
+||||++|.|+..++|++++|+|||+++.+|+||||||||||||||||||||||||+|++++|+|||||||+++.||+|+
T Consensus 144 ~AlNev~v~~~~~~~~~~~~v~i~~~~~~~~~gDGlIVsTPtGSTAYslSaGGPIv~p~~~~~~ltPI~p~~l~~rpiVl 223 (291)
T PRK02155 144 LAFNDVVVNRSGFSGMVELRVSVDGRFMYNQRSDGLIVATPTGSTAYALSAGGPILHPQLPGWVLVPIAPHTLSNRPIVL 223 (291)
T ss_pred eeeeheeeccCCCCceEEEEEEECCEEEEEEecCeEEEECCCchhhhhhhcCCcccCCCCCeEEEEecCcCccCCCCEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEccCCCCeEEEEEcCCceeecCCCCEEEEEEcCceeeEEEecCCCCcHHHHHHhhcCCCcc
Q psy5950 410 PAGVELKISVSPDSRNTAWVSFDGRNRQELLHGDSLRVTTSIYPVPSICAQDQIADWFDSLGECLHWNVR 479 (511)
Q Consensus 410 p~~~~I~I~v~~~sr~~a~v~iDG~~~~~L~~Gd~V~I~~S~~~l~lI~~~~~~~~~f~~Lr~KL~Wg~r 479 (511)
|++++|+|++.. .+ .+.+++||+....+++||+|.|++|+++++++++.+ ++||+.||+||+||..
T Consensus 224 ~~~~~i~i~~~~-~~-~~~l~~DG~~~~~l~~~d~i~i~~s~~~~~~~~~~~--~~f~~~l~~Kl~w~~~ 289 (291)
T PRK02155 224 PDDSEVAIQIVG-GR-DVSVNFDMQSLTSLELGDRIEVRRSPHTVRFLHPVG--YSYYATLRKKLHWNEG 289 (291)
T ss_pred CCCCEEEEEEcC-CC-cEEEEEcCCcceeCCCCCEEEEEECCCeEEEEecCC--CCHHHHHHHhcCCCCC
Confidence 999999999865 34 589999999999999999999999999999998866 7999999999999954
No 12
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=2.4e-69 Score=541.77 Aligned_cols=268 Identities=28% Similarity=0.458 Sum_probs=233.6
Q ss_pred HHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEEcCchhHHHHHHHcCCCCCc
Q psy5950 189 FVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICLGGDGTLLYASLLFQQSVPP 268 (511)
Q Consensus 189 ~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvLGGDGTlL~Aar~~~~~~~P 268 (511)
++++++||.+ +++.+++++......... .+ .. ...+++.+++|+||++|||||||+|+|.+...++|
T Consensus 2 ~~~l~~~l~~-~g~~v~~~~~~~~~~~~~---~~--------~~-~~~~~~~~~~d~vi~iGGDGT~L~aa~~~~~~~~P 68 (272)
T PRK02231 2 HKNLFHWLKE-RGYQVLVEKEIAEQLNLP---EN--------HL-ASLEEIGQRAQLAIVIGGDGNMLGRARVLAKYDIP 68 (272)
T ss_pred HHHHHHHHHH-CCCEEEEecchhhhcCcc---cc--------cc-CChHHhCcCCCEEEEECCcHHHHHHHHHhccCCCc
Confidence 5789999975 578888886543221000 00 00 01133445789999999999999999999989999
Q ss_pred EEEEeCCCccccccCCcccHHHHHHHHHc-CCcEEEEEeeEEEEEEeCCcccccCCCCCCccceeeeEEeecCCCCcEEE
Q psy5950 269 VMAFHLGSLGFLTPFEFENFEDQVTNVLE-GHAALTLRSRLRCIIMRKNEETAKDAKPPTNILVLNEVVIDRGPSPYLSN 347 (511)
Q Consensus 269 ILGINlG~LGFLt~~~~~~~~~~L~~il~-G~~~ie~R~rL~v~V~~~~~~~~~~~~~~~~~~ALNEVvI~Rg~~~~~~~ 347 (511)
|||||+|+||||++++++++.+.|+++++ |+|.+++|+||+|++.++++. ...++||||++|.|+..++|++
T Consensus 69 ilgIn~G~lGFL~~~~~~~~~~~l~~~~~~g~~~i~~r~~L~~~v~~~~~~-------~~~~~alNev~i~~~~~~~~~~ 141 (272)
T PRK02231 69 LIGINRGNLGFLTDIDPKNAYEQLEACLERGEFFVEERFLLEAKIERNGKI-------IATSNALNEVVIHPAKIAHMID 141 (272)
T ss_pred EEEEeCCCCcccccCCHHHHHHHHHHHHhcCCceEEEeeeEEEEEEECCeE-------eeeeEEEEEEEEecCCCCceEE
Confidence 99999999999999999999999999999 999999999999998765433 1245899999999999999999
Q ss_pred EEEEECCEEEEEEecCeeEEcCCCchhHHHhhcCCCccCCCCCceEEEEcCCCCCCCCCEEeCCCCEEEEEEccCCCCeE
Q psy5950 348 IDLYLDGKLITSVQGDGLIVSTPTGSTAYAVAAGASMIHPSVPAIMVTPICPHSLSFRPIVVPAGVELKISVSPDSRNTA 427 (511)
Q Consensus 348 i~v~idg~~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~aivITPIcPhsLs~RPiVlp~~~~I~I~v~~~sr~~a 427 (511)
+++++||+++.+|+||||||||||||||||||||||||+|++++|+|||||||+|++||||+|++++|+|++.......+
T Consensus 142 ~~v~i~~~~~~~~~~DGlIVsTPtGSTAY~lSAGGPIv~P~~~~~~itPI~Phsl~~RpiVl~~~~~I~i~~~~~~~~~~ 221 (272)
T PRK02231 142 FHVYIDDKFAFSQRSDGLIISTPTGSTAYSLSAGGPILTPNLNAIALVPMFPHTLSSRPLVIDGDSKISLRFAEYNTPQL 221 (272)
T ss_pred EEEEECCEEEEEEecCeEEEECCCcHHHHHhhCCCceeCCCCCeEEEEeccccccCCCCEEECCCCEEEEEEcCCCCccE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999865333358
Q ss_pred EEEEcCCceeecCCCCEEEEEEcCceeeEEEecCCCCcHHHHHHhhcCCCc
Q psy5950 428 WVSFDGRNRQELLHGDSLRVTTSIYPVPSICAQDQIADWFDSLGECLHWNV 478 (511)
Q Consensus 428 ~v~iDG~~~~~L~~Gd~V~I~~S~~~l~lI~~~~~~~~~f~~Lr~KL~Wg~ 478 (511)
.+++||+....+++||+|.|++|++++++|++.+ ++||++||+||+|+.
T Consensus 222 ~l~~DG~~~~~l~~~d~v~I~~s~~~~~lv~~~~--~~f~~~Lr~KL~w~~ 270 (272)
T PRK02231 222 EVSCDSQIALPFTPDDRVHVQKSPDKLRLLHLKN--YNYYNVLSSKLGWLK 270 (272)
T ss_pred EEEECCCeEEEeCCCcEEEEEEcCCEEEEEEcCC--CCHHHHHHHHhCCCC
Confidence 8999999999999999999999999999999876 799999999999994
No 13
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=1.2e-66 Score=522.23 Aligned_cols=265 Identities=23% Similarity=0.423 Sum_probs=233.7
Q ss_pred EEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEEcCc
Q psy5950 173 TVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICLGGD 252 (511)
Q Consensus 173 ~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvLGGD 252 (511)
+|+|+.|+.++++.+.+.++++|| ++ ++.++++...+... . . ..+ ..++. ++|++|++|||
T Consensus 2 ~i~iv~~~~~~~~~~~~~~i~~~l-~~-g~~~~~~~~~~~~~--~-~----------~~~--~~~~~--~~D~vi~lGGD 62 (271)
T PRK01185 2 KVAFVIRKDCKRCIKIAKSIIELL-PP-DWEIIYEMEAAKAL--G-M----------DGL--DIEEI--NADVIITIGGD 62 (271)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHH-hc-CCEEEEechhhhhc--C-c----------ccC--ccccc--CCCEEEEEcCc
Confidence 499999999999999999999999 44 67888776433211 0 0 000 01122 68999999999
Q ss_pred hhHHHHHHHcCCCCCcEEEEeCCCccccccCCcccHHHHHHHHHcCCcEEEEEeeEEEEEEeCCcccccCCCCCCcccee
Q psy5950 253 GTLLYASLLFQQSVPPVMAFHLGSLGFLTPFEFENFEDQVTNVLEGHAALTLRSRLRCIIMRKNEETAKDAKPPTNILVL 332 (511)
Q Consensus 253 GTlL~Aar~~~~~~~PILGINlG~LGFLt~~~~~~~~~~L~~il~G~~~ie~R~rL~v~V~~~~~~~~~~~~~~~~~~AL 332 (511)
||||+|+|.+. +||+|||+|+||||+++++++++++|+++++|+|.+++|++|++.+. ++. .++||
T Consensus 63 GT~L~a~~~~~---~PilGIN~G~lGFL~~~~~~~~~~~l~~i~~g~~~i~~r~~L~~~v~--g~~---------~~~aL 128 (271)
T PRK01185 63 GTILRTLQRAK---GPILGINMGGLGFLTEIEIDEVGSAIKKLIRGEYFIDERMKLKVYIN--GER---------LEDCT 128 (271)
T ss_pred HHHHHHHHHcC---CCEEEEECCCCccCcccCHHHHHHHHHHHHcCCcEEEEeeEEEEEEC--CcE---------eEEEE
Confidence 99999999874 59999999999999999999999999999999999999999999982 211 24699
Q ss_pred eeEEeecCCCCcEEEEEEEECCEEEEEEecCeeEEcCCCchhHHHhhcCCCccCCCCCceEEEEcCCCCCCCCCEEeCCC
Q psy5950 333 NEVVIDRGPSPYLSNIDLYLDGKLITSVQGDGLIVSTPTGSTAYAVAAGASMIHPSVPAIMVTPICPHSLSFRPIVVPAG 412 (511)
Q Consensus 333 NEVvI~Rg~~~~~~~i~v~idg~~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~aivITPIcPhsLs~RPiVlp~~ 412 (511)
||++|.|+..++|+++++++||+++.+|+||||||||||||||||||||||||+|++++|++||||||+++.||+|+|++
T Consensus 129 Ndvvv~~~~~~~~i~~~v~i~~~~~~~~~~DGlIVsTPTGSTAYslSAGGPIv~P~~~~~~ltPI~Ph~l~~rplVl~~~ 208 (271)
T PRK01185 129 NEAVIHTDRIAKIRQFKIYYDGHFLDTFKADGVIVATPTGSTSYSSSAGGPILLPNLEGMVISYIAPYSSRPKSVVVPSE 208 (271)
T ss_pred EEEEEecCCCCcEEEEEEEECCEEEEEEEeeEEEEeCCCchHHHHhhCCCceeCCCCCeEEEEecccCCCCCCCEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEEccCCCCeEEEEEcCCceeecCCCCEEEEEEcCceeeEEEecCCCCcHHHHHHhhcC
Q psy5950 413 VELKISVSPDSRNTAWVSFDGRNRQELLHGDSLRVTTSIYPVPSICAQDQIADWFDSLGECLH 475 (511)
Q Consensus 413 ~~I~I~v~~~sr~~a~v~iDG~~~~~L~~Gd~V~I~~S~~~l~lI~~~~~~~~~f~~Lr~KL~ 475 (511)
++|+|++.. . ..+.+++||+....+++||+|.|++|+++++++++.+ +||++||+||.
T Consensus 209 ~~I~i~~~~-~-~~~~l~~DG~~~~~l~~~d~i~i~~s~~~~~~v~~~~---~f~~~Lr~KL~ 266 (271)
T PRK01185 209 STVEIKIAG-D-QSSLLILDGQYEYKISKGDTVEISKSENYARFISFRE---SPYDRIREKLI 266 (271)
T ss_pred CEEEEEEcC-C-CCEEEEECCCceEecCCCCEEEEEECCCeeEEEEcCC---CHHHHHHHHHh
Confidence 999999864 2 3589999999999999999999999999999999853 89999999985
No 14
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=3.4e-66 Score=526.21 Aligned_cols=292 Identities=29% Similarity=0.430 Sum_probs=246.4
Q ss_pred CcEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEEc
Q psy5950 171 PLTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICLG 250 (511)
Q Consensus 171 p~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvLG 250 (511)
.++|++|.+++++++.+.+.++++||++ .++.++++....+.... ..+ .......+|+||++|
T Consensus 3 ~kkv~lI~n~~~~~~~~~~~~i~~~L~~-~g~~v~v~~~~~~~~~~-------------~~~---~~~~~~~~d~vi~~G 65 (305)
T PRK02645 3 LKQVIIAYKAGSSQAKEAAERCAKQLEA-RGCKVLMGPSGPKDNPY-------------PVF---LASASELIDLAIVLG 65 (305)
T ss_pred cCEEEEEEeCCCHHHHHHHHHHHHHHHH-CCCEEEEecCchhhccc-------------cch---hhccccCcCEEEEEC
Confidence 4689999999989999999999999975 56788776643321100 000 122234689999999
Q ss_pred CchhHHHHHHHcCCCCCcEEEEeC-CCccccccCC--cccHHHHHHHHHcCCcEEEEEeeEEEEEEeCCcccccCCCCCC
Q psy5950 251 GDGTLLYASLLFQQSVPPVMAFHL-GSLGFLTPFE--FENFEDQVTNVLEGHAALTLRSRLRCIIMRKNEETAKDAKPPT 327 (511)
Q Consensus 251 GDGTlL~Aar~~~~~~~PILGINl-G~LGFLt~~~--~~~~~~~L~~il~G~~~ie~R~rL~v~V~~~~~~~~~~~~~~~ 327 (511)
||||||++++.+...++||+|||+ |+||||+++. .++ +++|+++++|+|.+++|++|+|++.++++... .....
T Consensus 66 GDGT~l~~~~~~~~~~~pv~gin~~G~lGFL~~~~~~~~~-~~~l~~i~~g~~~i~~r~~L~~~~~~~~~~~~--~~~~~ 142 (305)
T PRK02645 66 GDGTVLAAARHLAPHDIPILSVNVGGHLGFLTHPRDLLQD-ESVWDRLQEDRYAIERRMMLQARVFEGDRSNE--EPVSE 142 (305)
T ss_pred CcHHHHHHHHHhccCCCCEEEEecCCcceEecCchhhcch-HHHHHHHHcCCceEEEeeEEEEEEEeCCcccc--ccccc
Confidence 999999999999888999999999 8999999885 344 89999999999999999999999876542100 00123
Q ss_pred ccceeeeEEeecCCCCcEE--EEEEEECCEEEEEEecCeeEEcCCCchhHHHhhcCCCccCCCCCceEEEEcCCCCCCCC
Q psy5950 328 NILVLNEVVIDRGPSPYLS--NIDLYLDGKLITSVQGDGLIVSTPTGSTAYAVAAGASMIHPSVPAIMVTPICPHSLSFR 405 (511)
Q Consensus 328 ~~~ALNEVvI~Rg~~~~~~--~i~v~idg~~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~aivITPIcPhsLs~R 405 (511)
.++||||++|.++..++++ .++|+|||+++.+|+||||||||||||||||||||||||+|++++|+|||||||+|+.|
T Consensus 143 ~~~AlNev~i~~~~~~~~~~~~~~v~id~~~~~~~~gDGlIVsTPtGSTAYslSAGGPIv~P~~~~~~vtPi~ph~l~~r 222 (305)
T PRK02645 143 SYYALNDFYLKPASEDRSPTCILELEIDGEVVDQYQGDGLIVSTPTGSTAYTMAAGGPILHPGIDAIIVTPICPMSLSSR 222 (305)
T ss_pred ceEEEeeEEEeccCcccccceEEEEEECCEEEEEEecCEEEEecCCChhhhhhhcCCcccCCCCCeEEEEecCcccccCC
Confidence 4689999999998877775 49999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEeCCCCEEEEEEccCCCCeEEEEEcCCceeecCCCCEEEEEEcCceeeEEEecCCCCcHHHHHHhhcCCCcccccc
Q psy5950 406 PIVVPAGVELKISVSPDSRNTAWVSFDGRNRQELLHGDSLRVTTSIYPVPSICAQDQIADWFDSLGECLHWNVRKRQK 483 (511)
Q Consensus 406 PiVlp~~~~I~I~v~~~sr~~a~v~iDG~~~~~L~~Gd~V~I~~S~~~l~lI~~~~~~~~~f~~Lr~KL~Wg~r~~qk 483 (511)
|+|+|++++|+|++.......+.+++||+....+++||+|.|++|+.+++++++.+ .++||+.|++||+|+.+..||
T Consensus 223 plVlp~~~~i~i~~~~~~~~~~~l~~DG~~~~~l~~~~~i~i~~s~~~~~~v~~~~-~~~f~~~L~~Kl~w~~~~~~~ 299 (305)
T PRK02645 223 PIVIPPGSRVVIWPLGDYDLNIKLWKDGVLATSIWPGQRCVIQKARHPAKFIILEE-SYSYYRTLREKLHWAGSLIHY 299 (305)
T ss_pred CEEECCCCEEEEEEcCCCCCcEEEEECCCcceecCCCCEEEEEECCCceEEEEeCC-CCCHHHHHHHHcCCCCccccc
Confidence 99999999999997654333578999999999999999999999999999998854 359999999999999876554
No 15
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=100.00 E-value=1.1e-65 Score=516.92 Aligned_cols=281 Identities=38% Similarity=0.614 Sum_probs=250.7
Q ss_pred cEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEEcC
Q psy5950 172 LTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICLGG 251 (511)
Q Consensus 172 ~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvLGG 251 (511)
++|+|+.|++++++...+.++..|+.. .+..+.++.+..+.... + ..+ .+...+.+|+|+++||
T Consensus 1 ~~~~i~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~l~~-----~-------~~~---~~~~~~~~d~ivvlGG 64 (281)
T COG0061 1 KKVGIVGRPDKPEALKIAKRLYEFLKF-KGVTVEVDQELAEELKD-----F-------ADY---VDDDEEKADLIVVLGG 64 (281)
T ss_pred CeEEEEecCCcHHHHHHHHHHHHHHHh-cCceEEEechhhhhccc-----c-------ccc---ccccccCceEEEEeCC
Confidence 479999999999999999999999985 46677777665542110 0 011 1122367899999999
Q ss_pred chhHHHHHHHcCCCCCcEEEEeCCCccccccCCcccHHHHHHHHHcCCcEEEEEeeEEEEEEeCCcccccCCCCCCccce
Q psy5950 252 DGTLLYASLLFQQSVPPVMAFHLGSLGFLTPFEFENFEDQVTNVLEGHAALTLRSRLRCIIMRKNEETAKDAKPPTNILV 331 (511)
Q Consensus 252 DGTlL~Aar~~~~~~~PILGINlG~LGFLt~~~~~~~~~~L~~il~G~~~ie~R~rL~v~V~~~~~~~~~~~~~~~~~~A 331 (511)
|||||+++|.+...++||+|||+|+|||||+++++++++.++++++|+|.+++|++|+|.+.+.+ ...++|
T Consensus 65 DGtlL~~~~~~~~~~~pilgin~G~lGFLt~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~v~~~~---------~~~~~a 135 (281)
T COG0061 65 DGTLLRAARLLARLDIPVLGINLGHLGFLTDFEPDELEKALDALLEGEYRIEERLLLEVSVNRGD---------IRRALA 135 (281)
T ss_pred cHHHHHHHHHhccCCCCEEEEeCCCcccccccCHHHHHHHHHHHhcCceEEEEeEEEEEEEEeCC---------ccccce
Confidence 99999999999999999999999999999999999999999999999999999999999998764 135689
Q ss_pred eeeEEeecCCCCcEEEEEEEECCEEEEEEecCeeEEcCCCchhHHHhhcCCCccCCCCCceEEEEcCCCCCCCCCEEeCC
Q psy5950 332 LNEVVIDRGPSPYLSNIDLYLDGKLITSVQGDGLIVSTPTGSTAYAVAAGASMIHPSVPAIMVTPICPHSLSFRPIVVPA 411 (511)
Q Consensus 332 LNEVvI~Rg~~~~~~~i~v~idg~~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~aivITPIcPhsLs~RPiVlp~ 411 (511)
|||++|.|+..++|+.+++++||+++++++||||||||||||||||+|||||||||++++|+|||||||++++||+|+|.
T Consensus 136 LNEv~I~~~~~~~~~~~~v~id~~~~~~~r~DGliVsTPTGSTAY~lSAGGPIv~P~l~ai~ltpi~p~~l~~Rpiv~p~ 215 (281)
T COG0061 136 LNEVVIHRGSPAKMIEFEVYIDDEFFESFRGDGLIVSTPTGSTAYNLSAGGPILHPGLDAIQLTPICPHSLSFRPLVLPS 215 (281)
T ss_pred eeEEEEecCCCCcEEEEEEEECCEEEEEEecCEEEEEcCCcHHHHhhhcCCCccCCCCCeEEEeecCCCcccCCCEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEEccCCCCeEEEEEcCCceeecCCCCEEEEEEcCceeeEEEecCCCCcHHHHHHhhcCCCc
Q psy5950 412 GVELKISVSPDSRNTAWVSFDGRNRQELLHGDSLRVTTSIYPVPSICAQDQIADWFDSLGECLHWNV 478 (511)
Q Consensus 412 ~~~I~I~v~~~sr~~a~v~iDG~~~~~L~~Gd~V~I~~S~~~l~lI~~~~~~~~~f~~Lr~KL~Wg~ 478 (511)
.++|++++....+..+++++||+....+.++++|.|++|+++++++++... .+||++|++||+|+.
T Consensus 216 ~~~v~i~~~~~~~~~~~~~~Dg~~~~~~~~~~~i~i~~s~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 281 (281)
T COG0061 216 SSTVRIEVLLTPKRDAVVVVDGQELLLINPGDRIEIRRSPYKARFIRLRSY-DDFFERLRSKLIWGV 281 (281)
T ss_pred CceEEEEEccCCCcceEEEEcCCceEecCCCCEEEEEECCCceeEEecCCc-ccHHHHHHHHhcCCC
Confidence 999999987655555799999999999999999999999999999987662 289999999999984
No 16
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=5.5e-66 Score=562.54 Aligned_cols=286 Identities=29% Similarity=0.508 Sum_probs=251.4
Q ss_pred cccCCCCcEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCcc
Q psy5950 165 LTWYKPPLTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKID 244 (511)
Q Consensus 165 l~w~~~p~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~D 244 (511)
-.|..+|.+|+||.|+.++++.+.+.++++||.+ .++++++++...... .. ++........+ ..++|
T Consensus 284 ~~w~~~~~~i~iv~~~~~~~~~~~~~~i~~~l~~-~~~~v~~~~~~~~~~--~~---------~~~~~~~~~~~-~~~~d 350 (569)
T PRK14076 284 NKWRIKPTKFGIVSRIDNEEAINLALKIIKYLDS-KGIPYELESFLYNKL--KN---------RLNEECNLIDD-IEEIS 350 (569)
T ss_pred hhcccCCcEEEEEcCCCCHHHHHHHHHHHHHHHH-CCCEEEEechhhhhh--cc---------ccccccccccc-ccCCC
Confidence 3899999999999999999999999999999985 578888886543221 00 00000000011 23689
Q ss_pred EEEEEcCchhHHHHHHHcCCCCCcEEEEeCCCccccccCCcccHHHHHHHHHcCCcEEEEEeeEEEEEEeCCcccccCCC
Q psy5950 245 FIICLGGDGTLLYASLLFQQSVPPVMAFHLGSLGFLTPFEFENFEDQVTNVLEGHAALTLRSRLRCIIMRKNEETAKDAK 324 (511)
Q Consensus 245 lVIvLGGDGTlL~Aar~~~~~~~PILGINlG~LGFLt~~~~~~~~~~L~~il~G~~~ie~R~rL~v~V~~~~~~~~~~~~ 324 (511)
+||+||||||||+|+|.+...++||||||+|+||||++++++++++.|+++++|+|.+++|++|+|.+.++++.
T Consensus 351 lvi~lGGDGT~L~aa~~~~~~~~PilGin~G~lGFL~~~~~~~~~~~l~~~~~g~~~i~~r~~L~~~v~~~~~~------ 424 (569)
T PRK14076 351 HIISIGGDGTVLRASKLVNGEEIPIICINMGTVGFLTEFSKEEIFKAIDSIISGEYEIEKRTKLSGFILKDGHQ------ 424 (569)
T ss_pred EEEEECCcHHHHHHHHHhcCCCCCEEEEcCCCCCcCcccCHHHHHHHHHHHHcCCceEEEeEEEEEEEEECCcc------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999865433
Q ss_pred CCCccceeeeEEeecCCCCcEEEEEEEECCEEEEEEecCeeEEcCCCchhHHHhhcCCCccCCCCCceEEEEcCCCCCCC
Q psy5950 325 PPTNILVLNEVVIDRGPSPYLSNIDLYLDGKLITSVQGDGLIVSTPTGSTAYAVAAGASMIHPSVPAIMVTPICPHSLSF 404 (511)
Q Consensus 325 ~~~~~~ALNEVvI~Rg~~~~~~~i~v~idg~~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~aivITPIcPhsLs~ 404 (511)
...++||||++|.|+..++|++++|+|||+++++|+||||||||||||||||||||||||+|++++|+|||||||+++.
T Consensus 425 -~~~~~alNdv~i~~~~~~~~~~~~v~i~~~~~~~~~~DGlivsTptGSTaYslSAGGPiv~p~~~~~~~tPI~ph~l~~ 503 (569)
T PRK14076 425 -NILPSALNEVVITTKNPAKMLHFEVYVNGELVEEVRADGIIISTPTGSTAYSLSAGGPIVEPTVDGFIIVPICPFKLSS 503 (569)
T ss_pred -eeeeEEEEEEEEccCCCCceEEEEEEECCEEEEEEECCEEEEeCCCchHHHHhhCCCceeCCCCCeEEEEeeccCCCCC
Confidence 2245899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEeCCCCEEEEEEccCCCCeEEEEEcCCceeecCCCCEEEEEEcCceeeEEEecCCCCcHHHHHHhhcCCC
Q psy5950 405 RPIVVPAGVELKISVSPDSRNTAWVSFDGRNRQELLHGDSLRVTTSIYPVPSICAQDQIADWFDSLGECLHWN 477 (511)
Q Consensus 405 RPiVlp~~~~I~I~v~~~sr~~a~v~iDG~~~~~L~~Gd~V~I~~S~~~l~lI~~~~~~~~~f~~Lr~KL~Wg 477 (511)
||||+|++++|+|++.. ..+.+++||+...+|.+||+|.|++|++++++|+. .+||++||+||+.|
T Consensus 504 rplV~~~~~~i~i~~~~---~~~~l~~DG~~~~~l~~gd~I~I~~s~~~~~~v~~----~~f~~~Lr~Kl~~~ 569 (569)
T PRK14076 504 RPLVVSANSEIKIKLLK---KSALVVIDGSIEFEAKKGDEIIFRKSDSYAYFVKG----DNFYNKLKKLSLMG 569 (569)
T ss_pred CCEEECCCCEEEEEEeC---CcEEEEECCceeeecCCCCEEEEEECCceEEEEec----chHHHHHHHHhCCC
Confidence 99999999999999853 35899999999999999999999999999999975 37999999999864
No 17
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=2.7e-65 Score=510.71 Aligned_cols=254 Identities=19% Similarity=0.349 Sum_probs=228.0
Q ss_pred cEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEEcC
Q psy5950 172 LTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICLGG 251 (511)
Q Consensus 172 ~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvLGG 251 (511)
++|+|+.+..+ ++.+.+.++.+||+++ +++++++ .+++|++|++||
T Consensus 3 ~~i~iv~~~~~-~a~~~~~~l~~~l~~~-g~~~~~~--------------------------------~~~~D~vi~lGG 48 (264)
T PRK03501 3 RNLFFFYKRDK-ELVEKVKPLKKIAEEY-GFTVVDH--------------------------------PKNANIIVSIGG 48 (264)
T ss_pred cEEEEEECCCH-HHHHHHHHHHHHHHHC-CCEEEcC--------------------------------CCCccEEEEECC
Confidence 37999999777 8999999999999864 4454311 034799999999
Q ss_pred chhHHHHHHHcCCC-CCcEEEEeC-CCccccccCCcccHHHHHHHHHcCCcEEEEEeeEEEEEEeCCcccccCCCCCCcc
Q psy5950 252 DGTLLYASLLFQQS-VPPVMAFHL-GSLGFLTPFEFENFEDQVTNVLEGHAALTLRSRLRCIIMRKNEETAKDAKPPTNI 329 (511)
Q Consensus 252 DGTlL~Aar~~~~~-~~PILGINl-G~LGFLt~~~~~~~~~~L~~il~G~~~ie~R~rL~v~V~~~~~~~~~~~~~~~~~ 329 (511)
|||||+|+|.+... .+||+|||+ |+||||++++++++++.|+++++|+|.+++|++|+|.+. ++ ..+
T Consensus 49 DGT~L~a~~~~~~~~~~pilgIn~~G~lGFL~~~~~~~~~~~l~~i~~g~~~~~~r~~l~~~v~--~~---------~~~ 117 (264)
T PRK03501 49 DGTFLQAVRKTGFREDCLYAGISTKDQLGFYCDFHIDDLDKMIQAITKEEIEVRKYPTIEVTVD--GS---------TSF 117 (264)
T ss_pred cHHHHHHHHHhcccCCCeEEeEecCCCCeEcccCCHHHHHHHHHHHHcCCcEEEEeeeEEEEEC--Cc---------cce
Confidence 99999999998765 789999999 999999999999999999999999999999999999972 21 134
Q ss_pred ceeeeEEeecCCCCcEEEEEEEECCEEEEEEecCeeEEcCCCchhHHHhhcCCCccCCCCCceEEEEcCCCCCC-C----
Q psy5950 330 LVLNEVVIDRGPSPYLSNIDLYLDGKLITSVQGDGLIVSTPTGSTAYAVAAGASMIHPSVPAIMVTPICPHSLS-F---- 404 (511)
Q Consensus 330 ~ALNEVvI~Rg~~~~~~~i~v~idg~~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~aivITPIcPhsLs-~---- 404 (511)
+||||++| ++..++|+.++++|||+++++|+||||||||||||||||||||||||+|++++|+|||||||+++ +
T Consensus 118 ~alNevvi-~~~~~~~~~~~v~id~~~~~~~~~DGlIVsTPtGSTAY~lSAGGPIv~P~~~~~~itPI~P~~~~~~~~l~ 196 (264)
T PRK03501 118 YCLNEFSI-RSSIIKTFVIDVYIDDLHFETFRGDGMVVSTPTGSTAYNKSVRGAVVDPLIPCFQVSELASLNNNTYRTLG 196 (264)
T ss_pred EEEEEEEE-cCCCCceEEEEEEECCEEeEEEecCEEEEeCCCchHHHHhhcCCcccCCCCCeEEEEeccccCccccccCC
Confidence 79999999 77788999999999999999999999999999999999999999999999999999999999987 5
Q ss_pred CCEEeCCCCEEEEEEccCCCCeEEEEEcCCceeecCCCCEEEEEEcCceeeEEEecCCCCcHHHHHHhhc
Q psy5950 405 RPIVVPAGVELKISVSPDSRNTAWVSFDGRNRQELLHGDSLRVTTSIYPVPSICAQDQIADWFDSLGECL 474 (511)
Q Consensus 405 RPiVlp~~~~I~I~v~~~sr~~a~v~iDG~~~~~L~~Gd~V~I~~S~~~l~lI~~~~~~~~~f~~Lr~KL 474 (511)
||+|+|++++|+|++.......+.+++||+. .++++||+|.|++|+++++++++.+ ++||+.||+|+
T Consensus 197 rpiVl~~~~~I~i~~~~~~~~~~~l~~DG~~-~~l~~~d~i~I~~s~~~~~lv~~~~--~~f~~~Lr~Kf 263 (264)
T PRK03501 197 SPFILSHERKLTLKIVQDGNDYPIIGMDNEA-LSIKHVEKIDIRLSDKQIKTVKLKD--NSFWEKVKRTF 263 (264)
T ss_pred CCEEECCCCEEEEEEecCCCCcEEEEEeCCE-EEcCCCCEEEEEECCCEEEEEEeCC--CCHHHHHHHhh
Confidence 9999999999999987543335789999998 8999999999999999999999876 79999999997
No 18
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=5.7e-65 Score=511.30 Aligned_cols=274 Identities=29% Similarity=0.463 Sum_probs=239.2
Q ss_pred EEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCC-CCCccEEEEEcC
Q psy5950 173 TVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDL-TDKIDFIICLGG 251 (511)
Q Consensus 173 ~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~-~~~~DlVIvLGG 251 (511)
+|+|+.++.++++.+.+.++++||++ .+++++++....... .. +. .. ...+. ..++|+||++||
T Consensus 2 ~v~iv~~~~k~~~~~~~~~I~~~L~~-~g~~v~v~~~~~~~~--~~---~~-------~~--~~~~~~~~~~d~vi~iGG 66 (277)
T PRK03708 2 RFGIVARRDKEEALKLAYRVYDFLKV-SGYEVVVDSETYEHL--PE---FS-------EE--DVLPLEEMDVDFIIAIGG 66 (277)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHH-CCCEEEEecchhhhc--Cc---cc-------cc--ccccccccCCCEEEEEeC
Confidence 59999999999999999999999986 467888765322210 00 00 00 00011 136899999999
Q ss_pred chhHHHHHHHcCCCCCcEEEEeCCCccccccCCcccHHHHHHHHHcCCcEEEEEeeEEEEEEeCCcccccCCCCCCccce
Q psy5950 252 DGTLLYASLLFQQSVPPVMAFHLGSLGFLTPFEFENFEDQVTNVLEGHAALTLRSRLRCIIMRKNEETAKDAKPPTNILV 331 (511)
Q Consensus 252 DGTlL~Aar~~~~~~~PILGINlG~LGFLt~~~~~~~~~~L~~il~G~~~ie~R~rL~v~V~~~~~~~~~~~~~~~~~~A 331 (511)
|||||+|+| +...++||+|||+|++|||+++++++++++|+++++|+|.+++|++|++.+ +++. .++|
T Consensus 67 DGTlL~a~~-~~~~~~pi~gIn~G~lGFl~~~~~~~~~~~l~~i~~g~~~~~~r~~l~~~~--~~~~---------~~~a 134 (277)
T PRK03708 67 DGTILRIEH-KTKKDIPILGINMGTLGFLTEVEPEETFFALSRLLEGDYFIDERIKLRVYI--NGEN---------VPDA 134 (277)
T ss_pred cHHHHHHHH-hcCCCCeEEEEeCCCCCccccCCHHHHHHHHHHHHcCCceEEEeEEEEEEE--CCeE---------eEEE
Confidence 999999999 667799999999999999999999999999999999999999999999987 2211 3579
Q ss_pred eeeEEeecCCCCcEEEEEEEECCEEEEEEecCeeEEcCCCchhHHHhhcCCCccCCCCCceEEEEcCCCCCCCCCEEeCC
Q psy5950 332 LNEVVIDRGPSPYLSNIDLYLDGKLITSVQGDGLIVSTPTGSTAYAVAAGASMIHPSVPAIMVTPICPHSLSFRPIVVPA 411 (511)
Q Consensus 332 LNEVvI~Rg~~~~~~~i~v~idg~~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~aivITPIcPhsLs~RPiVlp~ 411 (511)
|||++|.++..++++++++++||+++.+|+||||||||||||||||||||||||||++++|++||||||+++.||+|+|+
T Consensus 135 lNdv~v~~~~~~~~~~~~v~idg~~~~~~~gDGvIvsTptGSTAY~lSaGGpIv~p~~~~~~vtPi~p~~l~~rplV~~~ 214 (277)
T PRK03708 135 LNEVVILTGIPGKIIHLKYYVDGELADEVRADGLIISTPTGSTAYAMSAGGPFVDPRLDAILIAPLCPFKLSSRPMVVPS 214 (277)
T ss_pred eeeEEEecCCCCcEEEEEEEECCEEEEEEecCEEEEeCCCchHHHHhhCCCcccCCCCCeEEEEecccccCCCCCEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEEccCCCCeEEEEEcCCceeecCCCCEEEEEEcCceeeEEEecCCCCcHHHHHHhhcCCC
Q psy5950 412 GVELKISVSPDSRNTAWVSFDGRNRQELLHGDSLRVTTSIYPVPSICAQDQIADWFDSLGECLHWN 477 (511)
Q Consensus 412 ~~~I~I~v~~~sr~~a~v~iDG~~~~~L~~Gd~V~I~~S~~~l~lI~~~~~~~~~f~~Lr~KL~Wg 477 (511)
+++|+|++....+ .+.+++||+....+++||+|.|++|+++++++++. .+||+.||+||+|.
T Consensus 215 ~~~i~l~~~~~~~-~~~l~~DG~~~~~l~~~~~v~i~~s~~~~~~~~~~---~~f~~~lr~KL~~~ 276 (277)
T PRK03708 215 SSRIDVKLLRTGR-EIILVIDGQYYEELPPDTEITIKKSPRKTKFVRFS---KEIYPKYTMKIKER 276 (277)
T ss_pred CCEEEEEEecCCC-cEEEEECCCeeEecCCCCEEEEEECCCeEEEEecC---CcHHHHHHHHhhhc
Confidence 9999999865433 57899999999999999999999999999999885 49999999999995
No 19
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=1.8e-63 Score=497.77 Aligned_cols=251 Identities=25% Similarity=0.382 Sum_probs=224.4
Q ss_pred EEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEEcCc
Q psy5950 173 TVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICLGGD 252 (511)
Q Consensus 173 ~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvLGGD 252 (511)
+|+|+.+ .++++.+.+.++.+||.++ ++++ + .+++|+||++|||
T Consensus 2 ~i~Ii~~-~~~~~~~~~~~l~~~l~~~-g~~~--~--------------------------------~~~~Dlvi~iGGD 45 (265)
T PRK04885 2 KVAIISN-GDPKSKRVASKLKKYLKDF-GFIL--D--------------------------------EKNPDIVISVGGD 45 (265)
T ss_pred EEEEEeC-CCHHHHHHHHHHHHHHHHc-CCcc--C--------------------------------CcCCCEEEEECCc
Confidence 4899998 6888999999999999764 4331 0 1357999999999
Q ss_pred hhHHHHHHHcCC--CCCcEEEEeCCCccccccCCcccHHHHHHHHHcCCcEEEEEeeEEEEEEeCCcccccCCCCCCccc
Q psy5950 253 GTLLYASLLFQQ--SVPPVMAFHLGSLGFLTPFEFENFEDQVTNVLEGHAALTLRSRLRCIIMRKNEETAKDAKPPTNIL 330 (511)
Q Consensus 253 GTlL~Aar~~~~--~~~PILGINlG~LGFLt~~~~~~~~~~L~~il~G~~~ie~R~rL~v~V~~~~~~~~~~~~~~~~~~ 330 (511)
||||+|+|.+.. .++||+|||+|+||||++++++++++.|+++++|+|.+++|++|+|++.++++. ...++
T Consensus 46 GT~L~a~~~~~~~~~~iPilGIN~G~lGFL~~~~~~~~~~~l~~i~~g~y~i~~r~~L~~~v~~~~~~-------~~~~~ 118 (265)
T PRK04885 46 GTLLSAFHRYENQLDKVRFVGVHTGHLGFYTDWRPFEVDKLVIALAKDPGQVVSYPLLEVKITYEDGE-------KEKYL 118 (265)
T ss_pred HHHHHHHHHhcccCCCCeEEEEeCCCceecccCCHHHHHHHHHHHHcCCceEEEEeeEEEEEEeCCCc-------Eeeee
Confidence 999999999987 699999999999999999999999999999999999999999999998765432 12358
Q ss_pred eeeeEEeecCCCCcEEEEEEEECCEEEEEEecCeeEEcCCCchhHHHhhcCCCccCCCCCceEEEEcCCCCCCCC-----
Q psy5950 331 VLNEVVIDRGPSPYLSNIDLYLDGKLITSVQGDGLIVSTPTGSTAYAVAAGASMIHPSVPAIMVTPICPHSLSFR----- 405 (511)
Q Consensus 331 ALNEVvI~Rg~~~~~~~i~v~idg~~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~aivITPIcPhsLs~R----- 405 (511)
||||++|.|+. +++.++++|||+++.+|+||||||||||||||||||||||||+|++++|++||||| ++.|
T Consensus 119 alNev~i~~~~--~~~~~~v~id~~~~~~~~gDGlIVsTptGSTAYslSaGGPIv~P~~~~~~ltPI~~--l~~r~~~~~ 194 (265)
T PRK04885 119 ALNEATIKRIE--GTLVADVYINGVLFERFRGDGLCVSTPTGSTAYNKSLGGAVLHPSIEALQLTEIAS--INNRVFRTL 194 (265)
T ss_pred eeeeeeeccCC--ceEEEEEEECCEEEEEEEcCEEEEECCCChHHHHhhCCCceeCCCCCeEEEEeecc--ccccccccC
Confidence 99999999875 69999999999999999999999999999999999999999999999999999997 4555
Q ss_pred --CEEeCCCCEEEEEEccCCCCeEEEEEcCCceeecCCCCEEEEEEcCceeeEEEecCCCCcHHHHHHhhcC
Q psy5950 406 --PIVVPAGVELKISVSPDSRNTAWVSFDGRNRQELLHGDSLRVTTSIYPVPSICAQDQIADWFDSLGECLH 475 (511)
Q Consensus 406 --PiVlp~~~~I~I~v~~~sr~~a~v~iDG~~~~~L~~Gd~V~I~~S~~~l~lI~~~~~~~~~f~~Lr~KL~ 475 (511)
|+|+|++++|+|++... ..+.+++||+. ..+++||+|.|++|+++++++++.+ ++||+.||+||-
T Consensus 195 ~~plVl~~~~~I~i~~~~~--~~~~l~~DG~~-~~l~~~d~i~i~~s~~~~~li~~~~--~~f~~~Lr~Kf~ 261 (265)
T PRK04885 195 GSPLILPKHHTITLKPVND--DDYQITVDHLT-IKHKNVKSIEYRVANEKIRFARFRH--FPFWKRVKDSFI 261 (265)
T ss_pred CCCEEECCCCEEEEEEcCC--CcEEEEECCCE-eecCCCCEEEEEECCceEEEEEcCC--CCHHHHHHHHhc
Confidence 99999999999998642 35899999999 8999999999999999999999876 799999999985
No 20
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=1e-61 Score=482.77 Aligned_cols=253 Identities=26% Similarity=0.371 Sum_probs=223.8
Q ss_pred EEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEEcCc
Q psy5950 173 TVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICLGGD 252 (511)
Q Consensus 173 ~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvLGGD 252 (511)
+++|++|+ ++.+...++++||.++ +..+..+.+.. ....++|+||++|||
T Consensus 2 ~~~~~~~~---~~~~~~~~~~~~l~~~-~~~~~~~~~~~--------------------------~~~~~~d~vi~iGGD 51 (256)
T PRK14075 2 KLGIFYRE---EKEKEAKFLKEKISKE-HEVVEFCEASA--------------------------SGKVTADLIIVVGGD 51 (256)
T ss_pred EEEEEeCc---cHHHHHHHHHHHHHHc-CCeeEeecccc--------------------------cccCCCCEEEEECCc
Confidence 46778654 3678889999999875 44554442200 112467999999999
Q ss_pred hhHHHHHHHcCCCCCcEEEEeCCCccccccCCcccHHHHHHHHHcCCcEEEEEeeEEEEEEeCCcccccCCCCCCcccee
Q psy5950 253 GTLLYASLLFQQSVPPVMAFHLGSLGFLTPFEFENFEDQVTNVLEGHAALTLRSRLRCIIMRKNEETAKDAKPPTNILVL 332 (511)
Q Consensus 253 GTlL~Aar~~~~~~~PILGINlG~LGFLt~~~~~~~~~~L~~il~G~~~ie~R~rL~v~V~~~~~~~~~~~~~~~~~~AL 332 (511)
||||+|+|.+ ++||+|||+|+||||++++++++++.|+++++|+|.+++|++|+|.+..+ .++||
T Consensus 52 GT~L~a~~~~---~~Pilgin~G~lGfl~~~~~~~~~~~l~~~~~g~~~~~~r~~l~~~~~~~------------~~~al 116 (256)
T PRK14075 52 GTVLKAAKKV---GTPLVGFKAGRLGFLSSYTLEEIDRFLEDLKNWNFREEKRWFLKIESELG------------NHLAL 116 (256)
T ss_pred HHHHHHHHHc---CCCEEEEeCCCCccccccCHHHHHHHHHHHHcCCcEEEEeeEEEEEEcCC------------cEEEE
Confidence 9999999998 89999999999999999999999999999999999999999999987421 34799
Q ss_pred eeEEeecCCCCcEEEEEEEECCEEEEEEecCeeEEcCCCchhHHHhhcCCCccCCCCCceEEEEcCCCCCCCCCEEeCCC
Q psy5950 333 NEVVIDRGPSPYLSNIDLYLDGKLITSVQGDGLIVSTPTGSTAYAVAAGASMIHPSVPAIMVTPICPHSLSFRPIVVPAG 412 (511)
Q Consensus 333 NEVvI~Rg~~~~~~~i~v~idg~~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~aivITPIcPhsLs~RPiVlp~~ 412 (511)
||++|.++..++++++++++||+.+.+|+||||||||||||||||+|||||||+|+++++++||||||+++.||+|+|.+
T Consensus 117 Nev~i~~~~~~~~~~~~v~i~~~~~~~~~~DG~ivsTptGSTaY~lSaGGpiv~p~~~~l~ItPI~Ph~L~~rpiVlp~~ 196 (256)
T PRK14075 117 NDVTLERDPSQKMVEIEVSFEDHSSMWFFADGVVISTPTGSTAYSLSLGGPIILPNCEVFEITPIAPQFLATRSIVIPSN 196 (256)
T ss_pred EEEEEecCCCCcEEEEEEEECCEEEEEEecCEEEEeCCCchHHHHhhCCCceeCCCCCeEEeeeeehhhcCCCceEcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEEccCCCCeEEEEEcCCceeecCCCCEEEEEEcCceeeEEEecCCCCcHHHHHHhhcCCCcc
Q psy5950 413 VELKISVSPDSRNTAWVSFDGRNRQELLHGDSLRVTTSIYPVPSICAQDQIADWFDSLGECLHWNVR 479 (511)
Q Consensus 413 ~~I~I~v~~~sr~~a~v~iDG~~~~~L~~Gd~V~I~~S~~~l~lI~~~~~~~~~f~~Lr~KL~Wg~r 479 (511)
.+|+|++. ..+.+.+||+. +..++.|+|+.++..++++++.+ ++||+.||+||+||.+
T Consensus 197 ~~I~I~~~----~~~~l~iDGe~---~~~~~~I~I~~s~~~l~li~~~~--~~f~~~l~~kl~w~~~ 254 (256)
T PRK14075 197 EKVTVESQ----RDINLIVDGVL---VGKTNRITVKKSRRYVRILRPKD--YDFVTVIKEKLGYGRR 254 (256)
T ss_pred CEEEEEEC----CceEEEECCCC---cCCCcEEEEEECCCEEEEEEcCC--CCHHHHHHHHhcCCcC
Confidence 99999874 24789999986 46789999999999999998765 8999999999999986
No 21
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=6.9e-61 Score=477.56 Aligned_cols=245 Identities=20% Similarity=0.305 Sum_probs=212.9
Q ss_pred EEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEEcCc
Q psy5950 173 TVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICLGGD 252 (511)
Q Consensus 173 ~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvLGGD 252 (511)
+..|++++ ++++.+...+|.++++.. ++ ..+++|+||+||||
T Consensus 2 ~~~i~~~~-~~~s~~~~~~l~~~~~~~-~~------------------------------------~~~~~D~vi~iGGD 43 (259)
T PRK00561 2 KYKIFAST-TPQTEPVLPKLKKVLKKK-LA------------------------------------VEDGADYLFVLGGD 43 (259)
T ss_pred EEEEEeCC-CHHHHHHHHHHHHHHhhC-CC------------------------------------ccCCCCEEEEECCc
Confidence 46788875 566777777777777532 10 01347999999999
Q ss_pred hhHHHHHHHcCCCCCcEEEEeCCCccccccCCcccHHH-HHHHHHcCCcEEEEEeeEEEEEEeCCcccccCCCCCCccce
Q psy5950 253 GTLLYASLLFQQSVPPVMAFHLGSLGFLTPFEFENFED-QVTNVLEGHAALTLRSRLRCIIMRKNEETAKDAKPPTNILV 331 (511)
Q Consensus 253 GTlL~Aar~~~~~~~PILGINlG~LGFLt~~~~~~~~~-~L~~il~G~~~ie~R~rL~v~V~~~~~~~~~~~~~~~~~~A 331 (511)
||||+|+|.+...++||+|||+|+||||++++++++++ .++++.+ |.+++|++|++.+.+ + .++|
T Consensus 44 GT~L~a~~~~~~~~iPilGIN~G~lGFL~~~~~~~~~~~~~~~l~~--~~~~~r~~L~~~~~~--~----------~~~A 109 (259)
T PRK00561 44 GFFVSTAANYNCAGCKVVGINTGHLGFYTSFNETDLDQNFANKLDQ--LKFTQIDLLEVQIDD--Q----------IHLV 109 (259)
T ss_pred HHHHHHHHHhcCCCCcEEEEecCCCccccccCHHHHHHHHHHHHhh--CCeEEEEEEEEEECC--C----------eeEE
Confidence 99999999999999999999999999999999999999 7777765 678999999998722 1 2479
Q ss_pred eeeEEeecCCCCcEEEEEEEECCEEEEEEecCeeEEcCCCchhHHHhhcCCCccCCCCCceEEEEcCCCC-----CCCCC
Q psy5950 332 LNEVVIDRGPSPYLSNIDLYLDGKLITSVQGDGLIVSTPTGSTAYAVAAGASMIHPSVPAIMVTPICPHS-----LSFRP 406 (511)
Q Consensus 332 LNEVvI~Rg~~~~~~~i~v~idg~~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~aivITPIcPhs-----Ls~RP 406 (511)
|||++|.++. ++.++|+|||+++++|+||||||||||||||||||||||||+|++++|+|||||||+ +..||
T Consensus 110 lNE~vi~~~~---~~~~~v~idg~~~~~~~gDGlIVsTPtGSTAYslSAGGPIv~P~~~~~~itPI~Ph~~~~~~~~~rp 186 (259)
T PRK00561 110 LNELAVYTNT---AYPINIFIDNEFWEKYRGSGLLIGPRTGSTALAKSAKGAVIFPRIDVIQIIELNPLLHPNQTTIQSP 186 (259)
T ss_pred EEEEEEccCC---ceEEEEEECCEEEEEEecCEEEEeCchHHHHHHHhCCCCccCCCCCeEEEEeeCCCCcccccccCCC
Confidence 9999999765 679999999999999999999999999999999999999999999999999999998 55799
Q ss_pred EEeCCCCEEEEEEccCC--CCeEEEEEcCCceeecCCCCEEEEEEcCceee-EEEecCCCCcHHHHHHhhc
Q psy5950 407 IVVPAGVELKISVSPDS--RNTAWVSFDGRNRQELLHGDSLRVTTSIYPVP-SICAQDQIADWFDSLGECL 474 (511)
Q Consensus 407 iVlp~~~~I~I~v~~~s--r~~a~v~iDG~~~~~L~~Gd~V~I~~S~~~l~-lI~~~~~~~~~f~~Lr~KL 474 (511)
+|+|++++|+|++.... +..+.+++||+....+.+||+|.|++|+.+++ ++++.+ ++||+.||+|+
T Consensus 187 lVl~~~~~I~i~~~~~~~~~~~~~l~~DG~~~~~l~~~d~v~i~~s~~~~~~~v~~~~--~~f~~~Lr~Kf 255 (259)
T PRK00561 187 IILPIDTKVEFEIKKAFDHDQFPRFYADGAKLRLGNSDTTIEISLVRSQAMFVASLKT--RDFIQKLKSTF 255 (259)
T ss_pred eEECCCCEEEEEEccCCCCCCcEEEEEcCCeeecCCCCCEEEEEEcCccceEEEECCC--CCHHHHHHHHh
Confidence 99999999999986422 23478999999999999999999999999999 688865 79999999998
No 22
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=100.00 E-value=1.4e-60 Score=479.35 Aligned_cols=279 Identities=38% Similarity=0.641 Sum_probs=231.5
Q ss_pred EEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCcccccccc--CCCCccccccccc----cccCCCCCCCCCccEE
Q psy5950 173 TVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLA--TNPSFTVVKDKLM----TFRDGKDDLTDKIDFI 246 (511)
Q Consensus 173 ~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~--~~~~f~~~~~~l~----~~~~~~~~~~~~~DlV 246 (511)
+||||.|+.++++.+.+.++++||.++.++.++++..+.++.... .........++.. ......+...+++|+|
T Consensus 1 kVgii~np~~~~~~~~~~~~~~~L~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~i 80 (285)
T PF01513_consen 1 KVGIIANPNKPEAIELANELARWLLEKQGIEVLVEGSIAEDILEAIKKRYEVISVEKKLKTLDDTRNALEEMLEEGVDLI 80 (285)
T ss_dssp -EEEEESSCGHCCCHHHHHHHHHHHHTTTEEEEEEHHHHHSHCCCSHSCCCCCTTSHCCCCTCEEEECCHHHHCCCSSEE
T ss_pred CEEEEEcCCCHHHHHHHHHHHHHHHhCCCEEEEEChHHHHHHHHhccccccccccccccccccccchhhhhhcccCCCEE
Confidence 699999999999999999999999976578888887765532111 0000000000000 0001112235789999
Q ss_pred EEEcCchhHHHHHHHcCCCCCcEEEEeCCCccccccCCcccHHHHHHHHHcCCcEEEEEeeEEEEEEeCCcccccCCCCC
Q psy5950 247 ICLGGDGTLLYASLLFQQSVPPVMAFHLGSLGFLTPFEFENFEDQVTNVLEGHAALTLRSRLRCIIMRKNEETAKDAKPP 326 (511)
Q Consensus 247 IvLGGDGTlL~Aar~~~~~~~PILGINlG~LGFLt~~~~~~~~~~L~~il~G~~~ie~R~rL~v~V~~~~~~~~~~~~~~ 326 (511)
|++|||||+|+|+|.+.+.++||||||+|++|||++++++++++.++++++|+|.+++|++|++.+.+.+.. ...
T Consensus 81 i~lGGDGT~L~~~~~~~~~~~Pilgin~G~lgfl~~~~~~~~~~~l~~~~~g~~~~~~r~~l~~~~~~~~~~-----~~~ 155 (285)
T PF01513_consen 81 IVLGGDGTFLRAARLFGDYDIPILGINTGTLGFLTEFEPEDIEEALEKILAGEYSIEERMRLEVSVDRKKGA-----EIA 155 (285)
T ss_dssp EEEESHHHHHHHHHHCTTST-EEEEEESSSSTSSSSEEGCGHHHHHHHHHHTHCEEEEEEEEEEEEEETTE------CEE
T ss_pred EEECCCHHHHHHHHHhccCCCcEEeecCCCccccccCCHHHHHHHHHHHhcCCeEEEEeeeEEEEEecCCcc-----cee
Confidence 999999999999999999999999999999999999999999999999999999999999999999886640 012
Q ss_pred CccceeeeEEeecCCCCcEEEEEEEECCEEEEEEecCeeEEcCCCchhHHHhhcCCCccCCCCCceEEEEcCCCCCCCCC
Q psy5950 327 TNILVLNEVVIDRGPSPYLSNIDLYLDGKLITSVQGDGLIVSTPTGSTAYAVAAGASMIHPSVPAIMVTPICPHSLSFRP 406 (511)
Q Consensus 327 ~~~~ALNEVvI~Rg~~~~~~~i~v~idg~~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~aivITPIcPhsLs~RP 406 (511)
..++||||++|.++..++++++++++|++++++++|||||||||||||||++||||||++|.+++|++||||||+++.||
T Consensus 156 ~~~~alNei~i~~~~~~~~~~~~v~i~~~~~~~~~~dGlivsTptGSTay~lSaGGpiv~p~~~~~~~tpi~p~~~~~rp 235 (285)
T PF01513_consen 156 LIDYALNEIVISRGRASRMIELEVFIDGEFLETYRGDGLIVSTPTGSTAYSLSAGGPIVHPGLDVIILTPICPHSLSNRP 235 (285)
T ss_dssp EEEEESSEEEEEESSTSSEEEEEEEETTEEEEEEEESEEEEEETGGGGTHHHHTT--EE-TTSSEEEEEEESESSTT-S-
T ss_pred eeeeeecCeeEEcCCCccceEEEEEECCEEEEEEEEeeeEEEecCCceEEEEecCccEeccCcceeEEEeccccccCCce
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCEEEEEEccCCCCeEEEEEcCCceeecCCCCEEEEEEcCceeeEEEe
Q psy5950 407 IVVPAGVELKISVSPDSRNTAWVSFDGRNRQELLHGDSLRVTTSIYPVPSICA 459 (511)
Q Consensus 407 iVlp~~~~I~I~v~~~sr~~a~v~iDG~~~~~L~~Gd~V~I~~S~~~l~lI~~ 459 (511)
+|+|++++|+|++. +..+.+++||+....+++||+|.|++|++++++|+.
T Consensus 236 iVl~~~~~i~i~~~---~~~~~~~~DG~~~~~~~~~d~i~i~~s~~~~~~irv 285 (285)
T PF01513_consen 236 IVLPDDSEIEIKVE---RREAVLAIDGQREIELKPGDEIRIRKSPKPVKLIRV 285 (285)
T ss_dssp EEEETTSEEEEEEE---SCEEEEEETTTEEEEECTTEEEEEEEECCEEEEEE-
T ss_pred EEECCCCEEEEEEe---CCCEEEEEECCceEEeCCCcEEEEEEcCCccEEEeC
Confidence 99999999999987 346899999999999999999999999999999863
No 23
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=100.00 E-value=3.7e-55 Score=433.65 Aligned_cols=213 Identities=22% Similarity=0.350 Sum_probs=183.6
Q ss_pred CCccEEEEEcCchhHHHHHHHcCCCCCcEEEEeCCCcccccc-CCcccHHHHHHHHHcCCcEEEEEeeEEEEEEeCCccc
Q psy5950 241 DKIDFIICLGGDGTLLYASLLFQQSVPPVMAFHLGSLGFLTP-FEFENFEDQVTNVLEGHAALTLRSRLRCIIMRKNEET 319 (511)
Q Consensus 241 ~~~DlVIvLGGDGTlL~Aar~~~~~~~PILGINlG~LGFLt~-~~~~~~~~~L~~il~G~~~ie~R~rL~v~V~~~~~~~ 319 (511)
+++|+||+||||||||+|+|.+...++||+|||+|+||||++ ++++++.+.|+++..+. ++.|.+ ++. ..++.
T Consensus 24 ~~~Dlvi~iGGDGTlL~a~~~~~~~~~PvlGIN~G~lGFL~~~~~~~e~~~~l~~~~~~~--~~~l~~-~~~--~~~~~- 97 (246)
T PRK04761 24 EEADVIVALGGDGFMLQTLHRYMNSGKPVYGMNRGSVGFLMNEYSEDDLLERIAAAEPTV--LHPLRM-TAT--DVSGE- 97 (246)
T ss_pred ccCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCCCCcccCCCCHHHHHHHHHHhhcCc--EEEEEE-EEE--ECCCc-
Confidence 357999999999999999999999999999999999999996 89999999999988773 344443 333 22211
Q ss_pred ccCCCCCCccceeeeEEeecCCCCcEEEEEEEECCEE-EEEEecCeeEEcCCCchhHHHhhcCCCccCCCCCceEEEEcC
Q psy5950 320 AKDAKPPTNILVLNEVVIDRGPSPYLSNIDLYLDGKL-ITSVQGDGLIVSTPTGSTAYAVAAGASMIHPSVPAIMVTPIC 398 (511)
Q Consensus 320 ~~~~~~~~~~~ALNEVvI~Rg~~~~~~~i~v~idg~~-v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~aivITPIc 398 (511)
...++||||++|.|+. .+++.++++|||++ +.+|+||||||||||||||||||||||||+|++++|+|||||
T Consensus 98 ------~~~~~ALNev~i~~~~-~~~~~~~v~idg~~~~~~~~gDGlIVSTPtGSTAY~lSAGGPIv~P~~~~~~itPI~ 170 (246)
T PRK04761 98 ------VHEALAINEVSLFRQT-RQAAKLRISIDGKVRMEELVCDGVLVATPAGSTAYNLSAHGPILPLGSNLLALTPIS 170 (246)
T ss_pred ------EeeeeeeeheeeecCC-CceEEEEEEECCEEEEEEEecCeEEEeCCcCHHHHHhhCCCcccCCCCCeEEEEeec
Confidence 1235899999999987 68999999999997 999999999999999999999999999999999999999999
Q ss_pred CCCCC-CCCEEeCCCCEEEEEEccCCCCeEEEEEcCCceeecCCCCEEEEEEcCce-eeEEEecCCCCcHHHHHH
Q psy5950 399 PHSLS-FRPIVVPAGVELKISVSPDSRNTAWVSFDGRNRQELLHGDSLRVTTSIYP-VPSICAQDQIADWFDSLG 471 (511)
Q Consensus 399 PhsLs-~RPiVlp~~~~I~I~v~~~sr~~a~v~iDG~~~~~L~~Gd~V~I~~S~~~-l~lI~~~~~~~~~f~~Lr 471 (511)
||++. +||+|+|++++|+|++....+..+.+++||+... .+|+|.|++|... +++++..+ .+||+.|-
T Consensus 171 P~~~~~~RplVlp~~~~I~i~~~~~~~~~~~l~~DG~~~~---~~~~v~I~~s~~~~~~l~~~~~--~~~~~~~~ 240 (246)
T PRK04761 171 PFRPRRWRGALLPNSATVRFDVLEPDKRPVSAVADNTEVR---DVVEVTIREDKDITVTLLFDPG--HSLEERIL 240 (246)
T ss_pred ccCCcCCccEEECCCCEEEEEEecCCCCcEEEEEcCCCcc---cCcEEEEEEcCCccEEEEECCC--CCHHHHHH
Confidence 99986 8999999999999998654433588999998864 4899999999987 88888755 78999875
No 24
>PLN02929 NADH kinase
Probab=100.00 E-value=5.7e-54 Score=435.31 Aligned_cols=204 Identities=25% Similarity=0.409 Sum_probs=188.9
Q ss_pred CCccEEEEEcCchhHHHHHHHcCCCCCcEEEEeCC------------------CccccccCCcccHHHHHHHHHcCCcEE
Q psy5950 241 DKIDFIICLGGDGTLLYASLLFQQSVPPVMAFHLG------------------SLGFLTPFEFENFEDQVTNVLEGHAAL 302 (511)
Q Consensus 241 ~~~DlVIvLGGDGTlL~Aar~~~~~~~PILGINlG------------------~LGFLt~~~~~~~~~~L~~il~G~~~i 302 (511)
.++|+||++|||||||+|+|.+ ..++||||||+| ++|||++++++++++.|+++++|+|.+
T Consensus 63 ~~~Dlvi~lGGDGT~L~aa~~~-~~~iPvlGIN~Gp~~~~~~~~~~~~~~~~r~lGfL~~~~~~~~~~~L~~il~g~~~~ 141 (301)
T PLN02929 63 RDVDLVVAVGGDGTLLQASHFL-DDSIPVLGVNSDPTQKDEVEEYSDEFDARRSTGHLCAATAEDFEQVLDDVLFGRLKP 141 (301)
T ss_pred CCCCEEEEECCcHHHHHHHHHc-CCCCcEEEEECCCcccccccccccccccccCccccccCCHHHHHHHHHHHHcCCceE
Confidence 5689999999999999999999 889999999999 799999999999999999999999999
Q ss_pred EEEeeEEEEEEeCCcccccCCCCCCccceeeeEEeecCCCCcEEEEEEEEC-----CEEEEEEecCeeEEcCCCchhHHH
Q psy5950 303 TLRSRLRCIIMRKNEETAKDAKPPTNILVLNEVVIDRGPSPYLSNIDLYLD-----GKLITSVQGDGLIVSTPTGSTAYA 377 (511)
Q Consensus 303 e~R~rL~v~V~~~~~~~~~~~~~~~~~~ALNEVvI~Rg~~~~~~~i~v~id-----g~~v~~~rgDGLIVSTPTGSTAYs 377 (511)
++|+||+|.+.+ +. ...+||||++|.++..+++++++++|| |+++.+++|||||||||||||||+
T Consensus 142 ~~r~~L~~~v~g--~~--------~~~~ALNEv~I~~~~~~~~~~~~v~i~~~g~~~~~~~~~~~DGliVsTpTGSTAY~ 211 (301)
T PLN02929 142 TELSRISTVVNG--TL--------LETPALNDVLIAHPSPAAVSRFSFRVGRQGGSSGPLINVRSSGLRVSTAAGSTAAM 211 (301)
T ss_pred EEeeeEEEEecC--Cc--------ccceEeeEEEEccCCCccEEEEEEEEcCccCCCceeEEeecCcEEEeCCccHHHHH
Confidence 999999999832 11 123899999999999999999999999 889999999999999999999999
Q ss_pred hhcCC---CccCCCCCceEEEEcCCCCCCCCCE---EeCCCCEEEEEEccCCCCeEEEEEcC-CceeecCCCCEEEEEEc
Q psy5950 378 VAAGA---SMIHPSVPAIMVTPICPHSLSFRPI---VVPAGVELKISVSPDSRNTAWVSFDG-RNRQELLHGDSLRVTTS 450 (511)
Q Consensus 378 LSAGG---PIV~P~v~aivITPIcPhsLs~RPi---Vlp~~~~I~I~v~~~sr~~a~v~iDG-~~~~~L~~Gd~V~I~~S 450 (511)
||||| ||++|++++|++||||||+ +.||+ |++++++|+|++.. ..+.+++|| +....++.||+|.|+++
T Consensus 212 lSAGG~i~Piv~P~l~~~vltPI~Ph~-~~r~l~~~vv~~~~~i~i~~~~---~~~~i~iDG~~~~~~l~~gd~i~I~~s 287 (301)
T PLN02929 212 LSAGGFPMPLLSRDLQYMVREPISPGH-PPKSLMHGFYKPGQHMQVRWNS---RKGTIYIDGSHVMHSIKLGDTIEISSD 287 (301)
T ss_pred HhcCCCCCCCCCcccceEEEEeeCCCC-CCCCccccEECCCCeEEEEEeC---CCEEEEECCCcceEecCCCCEEEEEEC
Confidence 99999 9999999999999999999 99999 99999999999843 247999999 56778999999999999
Q ss_pred CceeeEEEe
Q psy5950 451 IYPVPSICA 459 (511)
Q Consensus 451 ~~~l~lI~~ 459 (511)
+.+++++..
T Consensus 288 ~~~l~l~~~ 296 (301)
T PLN02929 288 APPLKVFLS 296 (301)
T ss_pred CCeEEEEEe
Confidence 999999975
No 25
>KOG4180|consensus
Probab=99.81 E-value=9.5e-20 Score=184.80 Aligned_cols=140 Identities=29% Similarity=0.381 Sum_probs=118.8
Q ss_pred CCCccEEEEEcCchhHHHHHHHcCCCCCcEEEEeC---CCccccc-c-CCcccHHHHHHHHHcCCcEEEEEeeEEEEEEe
Q psy5950 240 TDKIDFIICLGGDGTLLYASLLFQQSVPPVMAFHL---GSLGFLT-P-FEFENFEDQVTNVLEGHAALTLRSRLRCIIMR 314 (511)
Q Consensus 240 ~~~~DlVIvLGGDGTlL~Aar~~~~~~~PILGINl---G~LGFLt-~-~~~~~~~~~L~~il~G~~~ie~R~rL~v~V~~ 314 (511)
...+|+||++|||||||.||+.+.+..+||+|||. |+-|.|+ + -.+++...+|.++..|+|+...|.|++.++..
T Consensus 103 i~waD~VisvGGDGTfL~Aasrv~~~~~PViGvNtDP~~Seg~lcL~~~~~~n~~~al~k~~sgnF~wv~r~rir~tv~g 182 (395)
T KOG4180|consen 103 IRWADMVISVGGDGTFLLAASRVIDDSKPVIGVNTDPTGSEGHLCLPDKYPSNPAGALCKLTSGNFEWVLRQRIRGTVVG 182 (395)
T ss_pred CchhhEEEEecCccceeehhhhhhccCCceeeecCCCCcCcceEeccccCCCCcHHHHHHHHhccHHHhhhheeEEEEec
Confidence 56789999999999999999988888899999997 7888887 2 22378899999999999999999999999986
Q ss_pred CCccccc-----------------------------CCCCCCccceeeeEEeecCCCCcEEEEEEEECCEEEEEEecCee
Q psy5950 315 KNEETAK-----------------------------DAKPPTNILVLNEVVIDRGPSPYLSNIDLYLDGKLITSVQGDGL 365 (511)
Q Consensus 315 ~~~~~~~-----------------------------~~~~~~~~~ALNEVvI~Rg~~~~~~~i~v~idg~~v~~~rgDGL 365 (511)
.++.... .......+.|||||.|...-+++++.|++.||+......++.|+
T Consensus 183 ~~gip~p~dlh~~q~s~nqr~sa~~i~~~~~s~sea~~~~~LpvlALNEVfIgE~lsarVS~y~i~idd~~~~KqKssgl 262 (395)
T KOG4180|consen 183 DDGIPDPIDLHDQQLSDNQRSSAKEIEETLLSHSEAVEIVALPVLALNEVFIGESLSARVSYYEISIDDKDGVKQKSSGL 262 (395)
T ss_pred CCCCCCchhhhhhhhccccccchhhHHHHHHhhhhhccccccchhhhcceeecCcccccceeEEEEecCcccccccCCCe
Confidence 5432110 01123356799999999999999999999999999989999999
Q ss_pred EEcCCCchhHHHhh
Q psy5950 366 IVSTPTGSTAYAVA 379 (511)
Q Consensus 366 IVSTPTGSTAYsLS 379 (511)
+|+|.||||+|+++
T Consensus 263 ~vctgTGstsw~~~ 276 (395)
T KOG4180|consen 263 VVCTGTGSTSWTFN 276 (395)
T ss_pred eEecCCCcceEeec
Confidence 99999999999875
No 26
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=99.03 E-value=2.9e-08 Score=99.88 Aligned_cols=112 Identities=19% Similarity=0.225 Sum_probs=77.4
Q ss_pred cEEEEEecC--CChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEE
Q psy5950 172 LTVLVIKKV--RDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICL 249 (511)
Q Consensus 172 ~~VlII~K~--~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvL 249 (511)
++++||.+| .+....+.+.++.++|.++ ++.+.+....... .... +. ......++|+||++
T Consensus 2 ~~~~ii~Np~sg~~~~~~~~~~i~~~l~~~-~~~~~~~~t~~~~-------~~~~----~~-----~~~~~~~~d~ivv~ 64 (293)
T TIGR00147 2 AEAPAILNPTAGKSNDNKPLREVIMLLREE-GMEIHVRVTWEKG-------DAAR----YV-----EEARKFGVDTVIAG 64 (293)
T ss_pred ceEEEEECCCccchhhHHHHHHHHHHHHHC-CCEEEEEEecCcc-------cHHH----HH-----HHHHhcCCCEEEEE
Confidence 588999988 5555667788999999764 4444332111110 0000 00 01112457999999
Q ss_pred cCchhHHHHHHHcCC-CCCcEEE-EeCCCcccccc-CC-cccHHHHHHHHHcCCc
Q psy5950 250 GGDGTLLYASLLFQQ-SVPPVMA-FHLGSLGFLTP-FE-FENFEDQVTNVLEGHA 300 (511)
Q Consensus 250 GGDGTlL~Aar~~~~-~~~PILG-INlG~LGFLt~-~~-~~~~~~~L~~il~G~~ 300 (511)
|||||+..+++.+.. ...|.+| |+.|+.++|+. +. +++..++++.+.+|+.
T Consensus 65 GGDGTl~~v~~~l~~~~~~~~lgiiP~Gt~N~~a~~l~i~~~~~~~~~~l~~~~~ 119 (293)
T TIGR00147 65 GGDGTINEVVNALIQLDDIPALGILPLGTANDFARSLGIPEDLDKAAKLVIAGDA 119 (293)
T ss_pred CCCChHHHHHHHHhcCCCCCcEEEEcCcCHHHHHHHcCCCCCHHHHHHHHHcCCc
Confidence 999999999987765 3556777 99999999986 77 6789999999999874
No 27
>PRK13057 putative lipid kinase; Reviewed
Probab=98.09 E-value=0.00025 Score=71.76 Aligned_cols=60 Identities=27% Similarity=0.372 Sum_probs=50.1
Q ss_pred CCccEEEEEcCchhHHHHHHHcCCCCCcEEEEeCCCccccc-cCC-cccHHHHHHHHHcCCc
Q psy5950 241 DKIDFIICLGGDGTLLYASLLFQQSVPPVMAFHLGSLGFLT-PFE-FENFEDQVTNVLEGHA 300 (511)
Q Consensus 241 ~~~DlVIvLGGDGTlL~Aar~~~~~~~PILGINlG~LGFLt-~~~-~~~~~~~L~~il~G~~ 300 (511)
.++|.||++|||||+-.++..+...++|+.-|-+|+-.-++ .+. +.+++++++.+..|..
T Consensus 49 ~~~d~iiv~GGDGTv~~v~~~l~~~~~~lgiiP~GT~Ndfar~Lg~~~~~~~a~~~i~~~~~ 110 (287)
T PRK13057 49 DGVDLVIVGGGDGTLNAAAPALVETGLPLGILPLGTANDLARTLGIPLDLEAAARVIATGQV 110 (287)
T ss_pred cCCCEEEEECchHHHHHHHHHHhcCCCcEEEECCCCccHHHHHcCCCCCHHHHHHHHHcCCe
Confidence 45799999999999999999888888998889999877776 333 4678999999998863
No 28
>PRK00861 putative lipid kinase; Reviewed
Probab=98.06 E-value=0.0021 Score=65.40 Aligned_cols=112 Identities=16% Similarity=0.227 Sum_probs=71.2
Q ss_pred CcEEEEEecCCC--hhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEE
Q psy5950 171 PLTVLVIKKVRD--VSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIIC 248 (511)
Q Consensus 171 p~~VlII~K~~~--~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIv 248 (511)
.++++||.+|.. -.....+.++...|.+...+.++..+...+.. ++. .+...+.+|+||+
T Consensus 2 ~~~~~iI~NP~sG~~~~~~~~~~i~~~l~~~~~~~~~~t~~~~~a~-------------~~a-----~~~~~~~~d~vv~ 63 (300)
T PRK00861 2 TRSACLIFNPVAGQGNPEVDLALIRAILEPEMDLDIYLTTPEIGAD-------------QLA-----QEAIERGAELIIA 63 (300)
T ss_pred CceEEEEECCCCCCCchhhhHHHHHHHHHhcCceEEEEccCCCCHH-------------HHH-----HHHHhcCCCEEEE
Confidence 458899998763 23344567788888653233443332211100 000 0111345799999
Q ss_pred EcCchhHHHHHHHcCCCCCcEEEEeCCCccccc-cCC-cccHHHHHHHHHcCCc
Q psy5950 249 LGGDGTLLYASLLFQQSVPPVMAFHLGSLGFLT-PFE-FENFEDQVTNVLEGHA 300 (511)
Q Consensus 249 LGGDGTlL~Aar~~~~~~~PILGINlG~LGFLt-~~~-~~~~~~~L~~il~G~~ 300 (511)
+|||||+=.++..+....+|+--|-.|+-.-++ .+. +.+++++++.+.+|..
T Consensus 64 ~GGDGTl~evv~~l~~~~~~lgviP~GTgNdfAr~lgi~~~~~~a~~~i~~g~~ 117 (300)
T PRK00861 64 SGGDGTLSAVAGALIGTDIPLGIIPRGTANAFAAALGIPDTIEEACRTILQGKT 117 (300)
T ss_pred ECChHHHHHHHHHHhcCCCcEEEEcCCchhHHHHHcCCCCCHHHHHHHHHcCCc
Confidence 999999999999887777776667788654443 343 3578899999999874
No 29
>PRK12361 hypothetical protein; Provisional
Probab=97.96 E-value=0.0021 Score=70.97 Aligned_cols=245 Identities=16% Similarity=0.154 Sum_probs=131.0
Q ss_pred CcEEEEEecCCC--hhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEE
Q psy5950 171 PLTVLVIKKVRD--VSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIIC 248 (511)
Q Consensus 171 p~~VlII~K~~~--~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIv 248 (511)
.++++||.+|.. -.....+.++.+.|.+....+++..+...+. .. +. .+...+.+|.||+
T Consensus 242 ~~~~~iI~NP~SG~g~~~~~~~~i~~~L~~~~~~~v~~t~~~~~a---------~~----la-----~~~~~~~~d~Viv 303 (547)
T PRK12361 242 HKRAWLIANPVSGGGKWQEYGEQIQRELKAYFDLTVKLTTPEISA---------EA----LA-----KQARKAGADIVIA 303 (547)
T ss_pred CCceEEEECCCCCCCcHHHHHHHHHHHHhcCCceEEEECCCCccH---------HH----HH-----HHHHhcCCCEEEE
Confidence 467888888763 3345667788888875322233222211100 00 00 0111245799999
Q ss_pred EcCchhHHHHHHHcCCCCCcEEEEeCCCccccc-cC---Cc--ccHHHHHHHHHcCCcEEEEEeeEEEEEEeCCcccccC
Q psy5950 249 LGGDGTLLYASLLFQQSVPPVMAFHLGSLGFLT-PF---EF--ENFEDQVTNVLEGHAALTLRSRLRCIIMRKNEETAKD 322 (511)
Q Consensus 249 LGGDGTlL~Aar~~~~~~~PILGINlG~LGFLt-~~---~~--~~~~~~L~~il~G~~~ie~R~rL~v~V~~~~~~~~~~ 322 (511)
+|||||+=.++..+.+.++|+-=|-.|+---++ .+ .. .+.+++++.+.+|...--... ++ + +
T Consensus 304 ~GGDGTl~ev~~~l~~~~~~lgiiP~GTgNdfAr~L~gi~~~~~~~~~a~~~i~~g~~~~iD~g--~v---n--~----- 371 (547)
T PRK12361 304 CGGDGTVTEVASELVNTDITLGIIPLGTANALSHALFGLGSKLIPVEQACDNIIQGHTQRIDTA--RC---N--D----- 371 (547)
T ss_pred ECCCcHHHHHHHHHhcCCCCEEEecCCchhHHHHHhcCCCCCCccHHHHHHHHHhCCCeEEEEE--EE---c--C-----
Confidence 999999999998887777776667778655443 22 11 478889999998864321111 11 0 0
Q ss_pred CCCCCccceeeeEEee----------c------CC------------CCcEEEEEEEECCEEEEEEecCeeEEcCCCchh
Q psy5950 323 AKPPTNILVLNEVVID----------R------GP------------SPYLSNIDLYLDGKLITSVQGDGLIVSTPTGST 374 (511)
Q Consensus 323 ~~~~~~~~ALNEVvI~----------R------g~------------~~~~~~i~v~idg~~v~~~rgDGLIVSTPTGST 374 (511)
.+.+|=+.+. + |. ..+...+.+.+||+.......--++|+- |+.
T Consensus 372 ------~~fln~agiG~da~v~~~~~~~~k~~~G~laY~~~~~~~l~~~~~~~l~i~~dg~~~~~~~~~~l~v~N--~~~ 443 (547)
T PRK12361 372 ------RLMLLLVGIGFEQKMIESADRERKNALGQLAYLDGLWRAVNENETLTLTVTLDDAEPQTISTHSLVVAN--AAP 443 (547)
T ss_pred ------eEEEEEEeechhHHHHHhccHHHHhccCHHHHHHHHHHHhhcCCCeeEEEEECCCCceEEEEEEEEEEc--CCC
Confidence 0122222210 0 00 0122467788898765555666666654 211
Q ss_pred HH-HhhcCCCccCCC---CCceEEEEcCCC---CC--------------CCCCEEeCCCCEEEEEEccCCCCeEEEEEcC
Q psy5950 375 AY-AVAAGASMIHPS---VPAIMVTPICPH---SL--------------SFRPIVVPAGVELKISVSPDSRNTAWVSFDG 433 (511)
Q Consensus 375 AY-sLSAGGPIV~P~---v~aivITPIcPh---sL--------------s~RPiVlp~~~~I~I~v~~~sr~~a~v~iDG 433 (511)
-+ .++-||+.-.|+ ++++++.+..+. .+ ....+..-...+++|+.. ....+.+||
T Consensus 444 ~~~~~~~Ggg~~~~~DG~Ldv~~v~~~~~~~~~l~~l~~~~~~g~~~~~~~~~v~~~~~k~v~I~~~----~~~~~~iDG 519 (547)
T PRK12361 444 FTSLLAQGGGEPNMTDGLLDITWLDSGGEPGEQLLSLAELALSGLGKEPEANKVHHAHAKKVTISSQ----KPIKYVIDG 519 (547)
T ss_pred cccccccCCCCCCCCCceeEEEEEcCCCcchHHHHHHHHHHHHHhcccCCCCceEEEEeeEEEEEeC----CceEEEECC
Confidence 10 123355443333 445555443220 00 011111112234555532 236788999
Q ss_pred CceeecCCCCEEEEEEcCceeeEEEecC
Q psy5950 434 RNRQELLHGDSLRVTTSIYPVPSICAQD 461 (511)
Q Consensus 434 ~~~~~L~~Gd~V~I~~S~~~l~lI~~~~ 461 (511)
.... ...++|+..+..++++....
T Consensus 520 E~~~----~~p~~i~v~p~al~vlvp~~ 543 (547)
T PRK12361 520 ELFE----DEDLTIEVQPASLKVFVPYQ 543 (547)
T ss_pred ccCC----ceEEEEEEecCceEEEecCc
Confidence 8653 36799999999999987543
No 30
>PRK13059 putative lipid kinase; Reviewed
Probab=97.93 E-value=0.0021 Score=65.56 Aligned_cols=110 Identities=15% Similarity=0.213 Sum_probs=67.8
Q ss_pred cEEEEEecCC--ChhhHHHHHHHHHHHHhcCCeEEEE-cCCccccccccCCCCccccccccccccCCCCCCCCCccEEEE
Q psy5950 172 LTVLVIKKVR--DVSVLQPFVKLVKWLIQEKSMLVYV-EQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIIC 248 (511)
Q Consensus 172 ~~VlII~K~~--~~~~~~~~~el~~~L~~~~~~~V~v-e~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIv 248 (511)
+++++|.+|. +-...+.+.++.++|.+. +.++.+ ......+... . .+...+.+|.||+
T Consensus 2 ~~~~~I~NP~aG~g~~~~~~~~i~~~l~~~-g~~~~~~~~~~~~~~~~--------~----------~~~~~~~~d~vi~ 62 (295)
T PRK13059 2 KKVKFIYNPYSGENAIISELDKVIRIHQEK-GYLVVPYRISLEYDLKN--------A----------FKDIDESYKYILI 62 (295)
T ss_pred cEEEEEECCcccchhHHHHHHHHHHHHHHC-CcEEEEEEccCcchHHH--------H----------HHHhhcCCCEEEE
Confidence 4688888875 233445667888888765 444322 2211111000 0 0112345799999
Q ss_pred EcCchhHHHHHHHcCC--CCCcEEEEeCCCccccc-cCC-cccHHHHHHHHHcCCc
Q psy5950 249 LGGDGTLLYASLLFQQ--SVPPVMAFHLGSLGFLT-PFE-FENFEDQVTNVLEGHA 300 (511)
Q Consensus 249 LGGDGTlL~Aar~~~~--~~~PILGINlG~LGFLt-~~~-~~~~~~~L~~il~G~~ 300 (511)
+|||||+=.++.-+.. ..+|+-=|-+|+---++ .+. +.+..++++.+..|..
T Consensus 63 ~GGDGTv~evv~gl~~~~~~~~lgviP~GTgNdfAr~lgi~~~~~~a~~~i~~g~~ 118 (295)
T PRK13059 63 AGGDGTVDNVVNAMKKLNIDLPIGILPVGTANDFAKFLGMPTDIGEACEQILKSKP 118 (295)
T ss_pred ECCccHHHHHHHHHHhcCCCCcEEEECCCCHhHHHHHhCCCCCHHHHHHHHHhCCc
Confidence 9999999888877653 35675556778654443 333 4678899999998863
No 31
>PRK13337 putative lipid kinase; Reviewed
Probab=97.75 E-value=0.0032 Score=64.34 Aligned_cols=110 Identities=19% Similarity=0.227 Sum_probs=66.1
Q ss_pred cEEEEEecCCC--hhhHHHHHHHHHHHHhcCCeE--EEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEE
Q psy5950 172 LTVLVIKKVRD--VSVLQPFVKLVKWLIQEKSML--VYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFII 247 (511)
Q Consensus 172 ~~VlII~K~~~--~~~~~~~~el~~~L~~~~~~~--V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVI 247 (511)
++++||.+|.. ......+.++.+.|.+. ++. ++..+...+...+ .. +...+..|.||
T Consensus 2 ~r~~~I~Np~aG~~~~~~~~~~~~~~l~~~-~~~~~~~~t~~~~~a~~~-------------a~-----~~~~~~~d~vv 62 (304)
T PRK13337 2 KRARIIYNPTSGRELFKKNLPDVLQKLEQA-GYETSAHATTGPGDATLA-------------AE-----RAVERKFDLVI 62 (304)
T ss_pred ceEEEEECCcccchhHHHHHHHHHHHHHHc-CCEEEEEEecCCCCHHHH-------------HH-----HHHhcCCCEEE
Confidence 57889998763 23345667888888765 333 3222211110000 00 01124569999
Q ss_pred EEcCchhHHHHHHHcCCC--CCcEEEEeCCCccccc-cCC-cccHHHHHHHHHcCCc
Q psy5950 248 CLGGDGTLLYASLLFQQS--VPPVMAFHLGSLGFLT-PFE-FENFEDQVTNVLEGHA 300 (511)
Q Consensus 248 vLGGDGTlL~Aar~~~~~--~~PILGINlG~LGFLt-~~~-~~~~~~~L~~il~G~~ 300 (511)
++|||||+=.++.-+... .+|+-=|-.|+---++ .+. +.+++++++.+.+|..
T Consensus 63 v~GGDGTl~~vv~gl~~~~~~~~lgiiP~GT~NdfAr~lgi~~~~~~a~~~i~~g~~ 119 (304)
T PRK13337 63 AAGGDGTLNEVVNGIAEKENRPKLGIIPVGTTNDFARALHVPRDIEKAADVIIEGHT 119 (304)
T ss_pred EEcCCCHHHHHHHHHhhCCCCCcEEEECCcCHhHHHHHcCCCCCHHHHHHHHHcCCe
Confidence 999999998888765533 4555556677654443 333 3578889999888864
No 32
>PRK13055 putative lipid kinase; Reviewed
Probab=97.67 E-value=0.0079 Score=62.55 Aligned_cols=113 Identities=13% Similarity=0.120 Sum_probs=67.7
Q ss_pred CcEEEEEecCCC--hhhHHHHHHHHHHHHhcCC-eEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEE
Q psy5950 171 PLTVLVIKKVRD--VSVLQPFVKLVKWLIQEKS-MLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFII 247 (511)
Q Consensus 171 p~~VlII~K~~~--~~~~~~~~el~~~L~~~~~-~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVI 247 (511)
.++++||.+|.. ......+.++.+.|.+.+. ..++.......+. . ++.. +.....+|+||
T Consensus 2 ~~r~~iI~NP~sG~~~~~~~~~~i~~~l~~~g~~~~i~~t~~~~~~a--------~----~~~~-----~~~~~~~d~vv 64 (334)
T PRK13055 2 QKRARLIYNPTSGQEIMKKNVADILDILEQAGYETSAFQTTPEPNSA--------K----NEAK-----RAAEAGFDLII 64 (334)
T ss_pred CceEEEEECCCCCchhHHHHHHHHHHHHHHcCCeEEEEEeecCCccH--------H----HHHH-----HHhhcCCCEEE
Confidence 367899998763 3345667888888876542 2343332111100 0 0000 01124579999
Q ss_pred EEcCchhHHHHHHHcCCC--CCcEEEEeCCCccccc-cCC-cc-cHHHHHHHHHcCCc
Q psy5950 248 CLGGDGTLLYASLLFQQS--VPPVMAFHLGSLGFLT-PFE-FE-NFEDQVTNVLEGHA 300 (511)
Q Consensus 248 vLGGDGTlL~Aar~~~~~--~~PILGINlG~LGFLt-~~~-~~-~~~~~L~~il~G~~ 300 (511)
++|||||+=.++.-+... .+|+-=|-+|+---++ .+. +. +..++++.+..|..
T Consensus 65 v~GGDGTl~evvngl~~~~~~~~LgiiP~GTgNdfAr~Lgi~~~~~~~a~~~l~~g~~ 122 (334)
T PRK13055 65 AAGGDGTINEVVNGIAPLEKRPKMAIIPAGTTNDYARALKIPRDNPVEAAKVILKNQT 122 (334)
T ss_pred EECCCCHHHHHHHHHhhcCCCCcEEEECCCchhHHHHHcCCCCcCHHHHHHHHHcCCc
Confidence 999999999888876642 4444446677654433 333 23 68889999988864
No 33
>PRK11914 diacylglycerol kinase; Reviewed
Probab=97.43 E-value=0.00079 Score=68.63 Aligned_cols=112 Identities=16% Similarity=0.181 Sum_probs=73.8
Q ss_pred CcEEEEEecCCC--hhhHHHHHHHHHHHHhcCCeE--EEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEE
Q psy5950 171 PLTVLVIKKVRD--VSVLQPFVKLVKWLIQEKSML--VYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFI 246 (511)
Q Consensus 171 p~~VlII~K~~~--~~~~~~~~el~~~L~~~~~~~--V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlV 246 (511)
+++++||.+|.. -.....+.++.+.|++. +++ ++..+. ..+. . ++. .+.....+|+|
T Consensus 8 ~~~~~iI~NP~sG~g~~~~~~~~~~~~l~~~-g~~~~~~~t~~-~~~~-~-----------~~a-----~~~~~~~~d~v 68 (306)
T PRK11914 8 IGKVTVLTNPLSGHGAAPHAAERAIARLHHR-GVDVVEIVGTD-AHDA-R-----------HLV-----AAALAKGTDAL 68 (306)
T ss_pred CceEEEEECCCCCCCcHHHHHHHHHHHHHHc-CCeEEEEEeCC-HHHH-H-----------HHH-----HHHHhcCCCEE
Confidence 578999998763 34566778899989765 444 332222 1110 0 000 01113457999
Q ss_pred EEEcCchhHHHHHHHcCCCCCcEEEEeCCCccccc-cCCc--ccHHHHHHHHHcCCcE
Q psy5950 247 ICLGGDGTLLYASLLFQQSVPPVMAFHLGSLGFLT-PFEF--ENFEDQVTNVLEGHAA 301 (511)
Q Consensus 247 IvLGGDGTlL~Aar~~~~~~~PILGINlG~LGFLt-~~~~--~~~~~~L~~il~G~~~ 301 (511)
|++|||||+=.++..+...++|+-=|-.|+--=++ .+.. ++.+++++.+.+|...
T Consensus 69 vv~GGDGTi~evv~~l~~~~~~lgiiP~GT~NdfAr~lg~~~~~~~~a~~~i~~g~~~ 126 (306)
T PRK11914 69 VVVGGDGVISNALQVLAGTDIPLGIIPAGTGNDHAREFGIPTGDPEAAADVIVDGWTE 126 (306)
T ss_pred EEECCchHHHHHhHHhccCCCcEEEEeCCCcchhHHHcCCCCCCHHHHHHHHHcCCce
Confidence 99999999999998887778887767888765444 4442 4688999999988653
No 34
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=97.33 E-value=0.029 Score=57.94 Aligned_cols=252 Identities=14% Similarity=0.103 Sum_probs=130.7
Q ss_pred CcEEEEEecCC--ChhhHHHHHHHHHHHHhcCCeEEEEcCCcc-ccccccCCCCccccccccccccCCCCCCCCCccEEE
Q psy5950 171 PLTVLVIKKVR--DVSVLQPFVKLVKWLIQEKSMLVYVEQSVM-DDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFII 247 (511)
Q Consensus 171 p~~VlII~K~~--~~~~~~~~~el~~~L~~~~~~~V~ve~~~~-~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVI 247 (511)
.+++.+|..+. +......+.++.+.|++++.........-. +...+ . .+.....+|.||
T Consensus 2 ~~~~~~i~Np~sG~~~~~~~~~~~~~~l~~~g~~~~~~~t~~~g~a~~~-------------a-----~~a~~~~~D~vi 63 (301)
T COG1597 2 MKKALLIYNPTSGKGKAKKLLREVEELLEEAGHELSVRVTEEAGDAIEI-------------A-----REAAVEGYDTVI 63 (301)
T ss_pred CceEEEEEcccccccchhhHHHHHHHHHHhcCCeEEEEEeecCccHHHH-------------H-----HHHHhcCCCEEE
Confidence 35677777654 446778889999999877543322221111 10000 0 011123789999
Q ss_pred EEcCchhHHHHHHHcCCCCCcEEEE-eCCCccccc---cCCcccHHHHHHHHHcCCcEEEE------E-eeEE-EEEEeC
Q psy5950 248 CLGGDGTLLYASLLFQQSVPPVMAF-HLGSLGFLT---PFEFENFEDQVTNVLEGHAALTL------R-SRLR-CIIMRK 315 (511)
Q Consensus 248 vLGGDGTlL~Aar~~~~~~~PILGI-NlG~LGFLt---~~~~~~~~~~L~~il~G~~~ie~------R-~rL~-v~V~~~ 315 (511)
+.|||||+=.++.-+...+.|.||| -+|+---++ .+..+++.++++.+.+|.-+... + ..+. +.+--.
T Consensus 64 a~GGDGTv~evingl~~~~~~~LgilP~GT~NdfAr~Lgip~~~~~~Al~~i~~g~~~~vDlg~~~~~~~fin~a~~G~~ 143 (301)
T COG1597 64 AAGGDGTVNEVANGLAGTDDPPLGILPGGTANDFARALGIPLDDIEAALELIKSGETRKVDLGQVNGRRYFINNAGIGFD 143 (301)
T ss_pred EecCcchHHHHHHHHhcCCCCceEEecCCchHHHHHHcCCCchhHHHHHHHHHcCCeEEEeehhcCCcceEEEEeecchh
Confidence 9999999999998877766664664 456554443 34444699999999998743221 1 1111 100000
Q ss_pred Cccc------ccCCCCCCc-cceeeeEEeecCCCCcEEEEEEEECCEEEEEEecCeeEEcCCCchhHHHhhcCC-CccCC
Q psy5950 316 NEET------AKDAKPPTN-ILVLNEVVIDRGPSPYLSNIDLYLDGKLITSVQGDGLIVSTPTGSTAYAVAAGA-SMIHP 387 (511)
Q Consensus 316 ~~~~------~~~~~~~~~-~~ALNEVvI~Rg~~~~~~~i~v~idg~~v~~~rgDGLIVSTPTGSTAYsLSAGG-PIV~P 387 (511)
-+.. .+....... ..+...+.. .-+...+++.+|++.+..-..=-++.-|+ +.|| ..+.|
T Consensus 144 a~~~~~~~~~~k~~~g~~~y~~~~~~~l~----~~~~~~~~i~~d~~~~~~~~~~~~~~~~~--------~~gg~~~~~p 211 (301)
T COG1597 144 AEVVAAVEEERKKGFGRLAYALAGLAVLA----RLKPFRIEIEYDGKTFEGEALALLVFNGN--------SYGGGMKLAP 211 (301)
T ss_pred HHHHHhhcHHHHhccchHHHHHHHHHhcc----ccCCCcEEEEEcCcEEEEEEEEEEEecCc--------ccccccccCC
Confidence 0000 000000000 011111111 12335788888988765333333333333 4444 45555
Q ss_pred CC-------CceEEEEcCCCC-------------CCCCCEEeCCCCEEEEEEccCCCCeEEEEEcCCceeecCCCCEEEE
Q psy5950 388 SV-------PAIMVTPICPHS-------------LSFRPIVVPAGVELKISVSPDSRNTAWVSFDGRNRQELLHGDSLRV 447 (511)
Q Consensus 388 ~v-------~aivITPIcPhs-------------Ls~RPiVlp~~~~I~I~v~~~sr~~a~v~iDG~~~~~L~~Gd~V~I 447 (511)
+. +.+++.+.+... .....+.......++|... ....+.+||....... +.|
T Consensus 212 ~a~~~dG~l~~~i~~~~~~~~~~~l~~~~~~G~~~~~~~v~~~~~~~~~i~~~----~~~~~~~DGE~~~~~p----~~i 283 (301)
T COG1597 212 DASLDDGLLDVYILKPQSLLELLALLPDLLRGKHLENPDVEYLRAKKLEITSD----PPIPVNLDGEYLGKTP----VTI 283 (301)
T ss_pred cCCCCCceEEEEEEccccHHHHHHHHHHHhCCCccCCCCeEEEeccEEEEEcC----CCceEeeCCccCCCCc----EEE
Confidence 43 344555543211 1111233334444555433 2367999998765443 888
Q ss_pred EEcCceeeEEEec
Q psy5950 448 TTSIYPVPSICAQ 460 (511)
Q Consensus 448 ~~S~~~l~lI~~~ 460 (511)
+.-+.-++++...
T Consensus 284 ~~~p~al~vl~p~ 296 (301)
T COG1597 284 EVLPGALRVLVPP 296 (301)
T ss_pred EEecccEEEEcCC
Confidence 8888888887554
No 35
>PRK13054 lipid kinase; Reviewed
Probab=96.93 E-value=0.0045 Score=63.14 Aligned_cols=111 Identities=19% Similarity=0.167 Sum_probs=67.0
Q ss_pred CCcEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEE--cCCccccccccCCCCccccccccccccCCCCCCCCCccEEE
Q psy5950 170 PPLTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYV--EQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFII 247 (511)
Q Consensus 170 ~p~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~v--e~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVI 247 (511)
++++++||.++... ....+.++.++|.+. ++.+-+ .+. ..+ ...+ . .+.....+|.||
T Consensus 2 ~~~~~~~i~N~~~~-~~~~~~~~~~~l~~~-g~~~~v~~t~~-~~~--------a~~~----a-----~~~~~~~~d~vv 61 (300)
T PRK13054 2 TFPKSLLILNGKSA-GNEELREAVGLLREE-GHTLHVRVTWE-KGD--------AARY----V-----EEALALGVATVI 61 (300)
T ss_pred CCceEEEEECCCcc-chHHHHHHHHHHHHc-CCEEEEEEecC-CCc--------HHHH----H-----HHHHHcCCCEEE
Confidence 46788899986543 456677788888754 444322 221 110 0000 0 011124579999
Q ss_pred EEcCchhHHHHHHHcCCC----CCcEEEEeCCCccccc-cCC-cccHHHHHHHHHcCCc
Q psy5950 248 CLGGDGTLLYASLLFQQS----VPPVMAFHLGSLGFLT-PFE-FENFEDQVTNVLEGHA 300 (511)
Q Consensus 248 vLGGDGTlL~Aar~~~~~----~~PILGINlG~LGFLt-~~~-~~~~~~~L~~il~G~~ 300 (511)
++|||||+=.++.-+.+. .+|+--|-.|+---++ .+. +.+.+++++.+.+|..
T Consensus 62 v~GGDGTl~evv~~l~~~~~~~~~~lgiiP~GTgNdfar~lgi~~~~~~a~~~i~~g~~ 120 (300)
T PRK13054 62 AGGGDGTINEVATALAQLEGDARPALGILPLGTANDFATAAGIPLEPDKALKLAIEGRA 120 (300)
T ss_pred EECCccHHHHHHHHHHhhccCCCCcEEEEeCCcHhHHHHhcCCCCCHHHHHHHHHhCCc
Confidence 999999999988876532 3565556777543332 333 3568889999888864
No 36
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=96.83 E-value=0.0016 Score=68.25 Aligned_cols=69 Identities=23% Similarity=0.318 Sum_probs=58.6
Q ss_pred CCccEEEEEcCchhHHHHHHHcCCCCCcEEEEeCCCccccc--cCCcccHHHHHHHHHcCCcEEEEEeeEEE
Q psy5950 241 DKIDFIICLGGDGTLLYASLLFQQSVPPVMAFHLGSLGFLT--PFEFENFEDQVTNVLEGHAALTLRSRLRC 310 (511)
Q Consensus 241 ~~~DlVIvLGGDGTlL~Aar~~~~~~~PILGINlG~LGFLt--~~~~~~~~~~L~~il~G~~~ie~R~rL~v 310 (511)
..+|+|+.+|||||.=-++... +.++|||||-.|.-=|.. .++|++....+..+++|++++++|...+.
T Consensus 99 ~gVdlIvfaGGDGTarDVa~av-~~~vPvLGipaGvk~~SgvfA~~P~~aa~l~~~~lkg~~r~~~r~V~di 169 (355)
T COG3199 99 RGVDLIVFAGGDGTARDVAEAV-GADVPVLGIPAGVKNYSGVFALSPEDAARLLGAFLKGNARLENREVVDI 169 (355)
T ss_pred cCceEEEEeCCCccHHHHHhhc-cCCCceEeeccccceeccccccChHHHHHHHHHHhcccccccccccccc
Confidence 3699999999999998888776 678999999999665553 67788999999999999999998876664
No 37
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=96.42 E-value=0.013 Score=59.65 Aligned_cols=60 Identities=23% Similarity=0.238 Sum_probs=42.1
Q ss_pred CCccEEEEEcCchhHHHHHHHcCCC----CCcEEEEeCCCccccc-cCC-cccHHHHHHHHHcCCc
Q psy5950 241 DKIDFIICLGGDGTLLYASLLFQQS----VPPVMAFHLGSLGFLT-PFE-FENFEDQVTNVLEGHA 300 (511)
Q Consensus 241 ~~~DlVIvLGGDGTlL~Aar~~~~~----~~PILGINlG~LGFLt-~~~-~~~~~~~L~~il~G~~ 300 (511)
.+.|.||++|||||+=.++.-+... .+|+-=|-+|+--=++ .+. +.+.+++++.++.|..
T Consensus 51 ~~~d~vv~~GGDGTi~ev~ngl~~~~~~~~~~lgiiP~GTgNdfAr~l~ip~~~~~a~~~i~~g~~ 116 (293)
T TIGR03702 51 LGVSTVIAGGGDGTLREVATALAQIRDDAAPALGLLPLGTANDFATAAGIPLEPAKALKLALNGAA 116 (293)
T ss_pred cCCCEEEEEcCChHHHHHHHHHHhhCCCCCCcEEEEcCCchhHHHHhcCCCCCHHHHHHHHHhCCc
Confidence 3468999999999988888766432 3355556777654333 444 4678899999988864
No 38
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=96.41 E-value=0.0076 Score=53.88 Aligned_cols=38 Identities=29% Similarity=0.281 Sum_probs=29.0
Q ss_pred ccEEEEEcCchhHHHHHHHcCCCCC----cEEEEeCCCcccc
Q psy5950 243 IDFIICLGGDGTLLYASLLFQQSVP----PVMAFHLGSLGFL 280 (511)
Q Consensus 243 ~DlVIvLGGDGTlL~Aar~~~~~~~----PILGINlG~LGFL 280 (511)
.|.||++|||||+-.++..+..... |+.=|-+|+---|
T Consensus 55 ~~~ivv~GGDGTl~~vv~~l~~~~~~~~~~l~iiP~GT~N~~ 96 (130)
T PF00781_consen 55 PDVIVVVGGDGTLNEVVNGLMGSDREDKPPLGIIPAGTGNDF 96 (130)
T ss_dssp -SEEEEEESHHHHHHHHHHHCTSTSSS--EEEEEE-SSS-HH
T ss_pred ccEEEEEcCccHHHHHHHHHhhcCCCccceEEEecCCChhHH
Confidence 5999999999999999998887654 7766788865444
No 39
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=96.28 E-value=0.021 Score=62.61 Aligned_cols=116 Identities=16% Similarity=0.177 Sum_probs=67.9
Q ss_pred cCCCCcEEEEEecCC--ChhhHHHHH-HHHHHHHhcCCeE--EEEcCCccccccccCCCCccccccccccccCCCCCCCC
Q psy5950 167 WYKPPLTVLVIKKVR--DVSVLQPFV-KLVKWLIQEKSML--VYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTD 241 (511)
Q Consensus 167 w~~~p~~VlII~K~~--~~~~~~~~~-el~~~L~~~~~~~--V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~ 241 (511)
+...|++++||.+|. +-.+...+. ++...|++. ++. ++.-+...+... +.. +....
T Consensus 107 ~~~~~kr~lvIvNP~SGkg~a~k~~~~~v~~~L~~~-gi~~~v~~T~~~ghA~~-------------la~-----~~~~~ 167 (481)
T PLN02958 107 SLGRPKRLLVFVNPFGGKKSASKIFFDVVKPLLEDA-DIQLTIQETKYQLHAKE-------------VVR-----TMDLS 167 (481)
T ss_pred hccCCcEEEEEEcCCCCCcchhHHHHHHHHHHHHHc-CCeEEEEeccCccHHHH-------------HHH-----Hhhhc
Confidence 445688999999875 344555554 466678654 443 332221111000 000 00124
Q ss_pred CccEEEEEcCchhHHHHHHHcCCC-------CCcEEEEeCCCcc-ccccC----C-cccHHHHHHHHHcCCcE
Q psy5950 242 KIDFIICLGGDGTLLYASLLFQQS-------VPPVMAFHLGSLG-FLTPF----E-FENFEDQVTNVLEGHAA 301 (511)
Q Consensus 242 ~~DlVIvLGGDGTlL~Aar~~~~~-------~~PILGINlG~LG-FLt~~----~-~~~~~~~L~~il~G~~~ 301 (511)
++|.||++||||||=.++.-+... .+|+-=|-+|+-- |-..+ . +.+..+++..|+.|...
T Consensus 168 ~~D~VV~vGGDGTlnEVvNGL~~~~~~~~~~~~pLGiIPaGTgNdfArsL~~~~gip~~~~~A~~~I~~g~~~ 240 (481)
T PLN02958 168 KYDGIVCVSGDGILVEVVNGLLEREDWKTAIKLPIGMVPAGTGNGMAKSLLDSVGEPCSATNAVLAIIRGHKC 240 (481)
T ss_pred CCCEEEEEcCCCHHHHHHHHHhhCccccccccCceEEecCcCcchhhhhhccccCCCcCHHHHHHHHHcCCce
Confidence 579999999999988888765432 4565556777542 22232 2 45788888889998743
No 40
>PLN02204 diacylglycerol kinase
Probab=94.50 E-value=0.2 Score=56.59 Aligned_cols=78 Identities=18% Similarity=0.139 Sum_probs=45.8
Q ss_pred CCCcEEEEEecCC--ChhhHHHHHHHHHHHHhcCC-eEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccE
Q psy5950 169 KPPLTVLVIKKVR--DVSVLQPFVKLVKWLIQEKS-MLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDF 245 (511)
Q Consensus 169 ~~p~~VlII~K~~--~~~~~~~~~el~~~L~~~~~-~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~Dl 245 (511)
..|++++||.+|. +-.......++...|...+. ..|++.+...+...+ +... .+...+.+|.
T Consensus 157 ~r~k~llVivNP~sGkg~~~~~~~~V~p~f~~a~i~~~v~~T~~aghA~d~------------~~~~---~~~~l~~~D~ 221 (601)
T PLN02204 157 GRPKNLLVFVHPLSGKGSGSRTWETVSPIFIRAKVKTKVIVTERAGHAFDV------------MASI---SNKELKSYDG 221 (601)
T ss_pred CCCceEEEEECCCCCCcchHHHHHHHHHHHHHcCCeEEEEEecCcchHHHH------------HHHH---hhhhccCCCE
Confidence 4588999998874 44556667788888876542 234444332211000 0000 0111346899
Q ss_pred EEEEcCchhHHHHHHH
Q psy5950 246 IICLGGDGTLLYASLL 261 (511)
Q Consensus 246 VIvLGGDGTlL~Aar~ 261 (511)
||++||||||=.++.-
T Consensus 222 VVaVGGDGt~nEVlNG 237 (601)
T PLN02204 222 VIAVGGDGFFNEILNG 237 (601)
T ss_pred EEEEcCccHHHHHHHH
Confidence 9999999997766653
No 41
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=93.57 E-value=0.15 Score=45.60 Aligned_cols=35 Identities=34% Similarity=0.626 Sum_probs=27.8
Q ss_pred CccEEEEEcCchhHHHHHHHcCCCC-----CcEEEEeCCC
Q psy5950 242 KIDFIICLGGDGTLLYASLLFQQSV-----PPVMAFHLGS 276 (511)
Q Consensus 242 ~~DlVIvLGGDGTlL~Aar~~~~~~-----~PILGINlG~ 276 (511)
..|.||+.|||||+=.++.-+.... +|+.=|-+|+
T Consensus 49 ~~d~vvv~GGDGTi~~vvn~l~~~~~~~~~~plgiiP~GT 88 (124)
T smart00046 49 KFDRVLVCGGDGTVGWVLNALDKRELPLPEPPVAVLPLGT 88 (124)
T ss_pred cCCEEEEEccccHHHHHHHHHHhcccccCCCcEEEeCCCC
Confidence 4689999999999999988776443 6777677774
No 42
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=91.30 E-value=0.29 Score=50.93 Aligned_cols=55 Identities=27% Similarity=0.492 Sum_probs=42.4
Q ss_pred CCccEEEEEcCchhHHHHHHHcCCCCCcEEEEeC-------C---CccccccCCcccHHHHHHHHHc
Q psy5950 241 DKIDFIICLGGDGTLLYASLLFQQSVPPVMAFHL-------G---SLGFLTPFEFENFEDQVTNVLE 297 (511)
Q Consensus 241 ~~~DlVIvLGGDGTlL~Aar~~~~~~~PILGINl-------G---~LGFLt~~~~~~~~~~L~~il~ 297 (511)
.++|.+|++|||||+-.|..+....++||+||-. | ++||-|..+ .+.+++.++..
T Consensus 90 ~~Id~Li~IGGdgs~~~a~~L~e~~~i~vigiPkTIDNDl~~td~s~GfdTA~~--~~~~~i~~i~~ 154 (301)
T TIGR02482 90 LGIEGLVVIGGDGSYTGAQKLYEEGGIPVIGLPGTIDNDIPGTDYTIGFDTALN--TIIDAVDKIRD 154 (301)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHhhCCCEEeecccccCCCcCcccCcChhHHHH--HHHHHHHHHHH
Confidence 3789999999999998888877657899999854 3 788888764 45566666643
No 43
>PRK14071 6-phosphofructokinase; Provisional
Probab=89.95 E-value=0.41 Score=50.92 Aligned_cols=55 Identities=25% Similarity=0.298 Sum_probs=42.2
Q ss_pred CCccEEEEEcCchhHHHHHHHcCCCCCcEEEEeC----------CCccccccCCcccHHHHHHHHHc
Q psy5950 241 DKIDFIICLGGDGTLLYASLLFQQSVPPVMAFHL----------GSLGFLTPFEFENFEDQVTNVLE 297 (511)
Q Consensus 241 ~~~DlVIvLGGDGTlL~Aar~~~~~~~PILGINl----------G~LGFLt~~~~~~~~~~L~~il~ 297 (511)
.++|.+|++|||||+-.+.++.+...+|++||-- =++||-|..+. ..++|+++..
T Consensus 106 ~~Id~Li~IGGdgS~~~a~~L~~~~~i~vIgiPkTIDNDl~~td~t~Gf~TA~~~--~~~~id~i~~ 170 (360)
T PRK14071 106 LGLDALIGIGGDGSLAILRRLAQQGGINLVGIPKTIDNDVGATEVSIGFDTAVNI--ATEALDRLHF 170 (360)
T ss_pred cCCCEEEEECChhHHHHHHHHHHhcCCcEEEecccccCCCcCcccCcChhHHHHH--HHHHHHHHHh
Confidence 3789999999999997766665544899999843 28899988765 5667777665
No 44
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=89.74 E-value=0.31 Score=51.76 Aligned_cols=54 Identities=30% Similarity=0.434 Sum_probs=43.0
Q ss_pred CCccEEEEEcCchhHHHHHHHcCCCCCcEEEEeC----------CCccccccCCcccHHHHHHHHH
Q psy5950 241 DKIDFIICLGGDGTLLYASLLFQQSVPPVMAFHL----------GSLGFLTPFEFENFEDQVTNVL 296 (511)
Q Consensus 241 ~~~DlVIvLGGDGTlL~Aar~~~~~~~PILGINl----------G~LGFLt~~~~~~~~~~L~~il 296 (511)
..+|.+|++|||||+-.|+.+.....+|++||-- =++||.|..+ -+.++|.++.
T Consensus 93 ~gId~LvvIGGDgS~~gA~~Lae~~~i~vVGvPkTIDNDi~~td~tiGfdTA~~--~~~eaid~l~ 156 (347)
T COG0205 93 LGIDALVVIGGDGSYTGAALLAEEGGIPVVGVPKTIDNDISGTDFTIGFDTALE--TAVEAIDNLR 156 (347)
T ss_pred cCCCEEEEECCCChHHHHHHHHHhcCCcEEecCCCccCCCcccccCccHHHHHH--HHHHHHHHHH
Confidence 4789999999999999999988776699999742 2789998765 4556666665
No 45
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=89.08 E-value=0.47 Score=49.84 Aligned_cols=54 Identities=30% Similarity=0.410 Sum_probs=41.4
Q ss_pred CCccEEEEEcCchhHHHHHHHcCCCCCcEEEEeC-------C---CccccccCCcccHHHHHHHHHc
Q psy5950 241 DKIDFIICLGGDGTLLYASLLFQQSVPPVMAFHL-------G---SLGFLTPFEFENFEDQVTNVLE 297 (511)
Q Consensus 241 ~~~DlVIvLGGDGTlL~Aar~~~~~~~PILGINl-------G---~LGFLt~~~~~~~~~~L~~il~ 297 (511)
.++|.+|++|||||+-.|..+.+ ..+||+||-. | ++||-|..+. +.+.++.+..
T Consensus 93 ~~Id~LivIGGdgS~~~a~~L~~-~gi~vigiPkTIDNDl~gtd~tiGfdTA~~~--~~~~i~~i~~ 156 (324)
T TIGR02483 93 LGLDALIAIGGDGTLGIARRLAD-KGLPVVGVPKTIDNDLEATDYTFGFDTAVEI--ATEALDRLHT 156 (324)
T ss_pred cCCCEEEEECCchHHHHHHHHHh-cCCCEEeeccccCCCCcCCccCcCHHHHHHH--HHHHHHHHHH
Confidence 46899999999999987776654 4699999853 3 7899887664 6666766655
No 46
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=88.42 E-value=0.49 Score=52.04 Aligned_cols=54 Identities=26% Similarity=0.411 Sum_probs=40.5
Q ss_pred CCccEEEEEcCchhHHHHHHHcC-----CCCCcEEEEeC----------CCccccccCCcccHHHHHHHHH
Q psy5950 241 DKIDFIICLGGDGTLLYASLLFQ-----QSVPPVMAFHL----------GSLGFLTPFEFENFEDQVTNVL 296 (511)
Q Consensus 241 ~~~DlVIvLGGDGTlL~Aar~~~-----~~~~PILGINl----------G~LGFLt~~~~~~~~~~L~~il 296 (511)
.++|.+|++|||||+-.|..+.. ...+||+||-- =++||-|.++ ...++|+++.
T Consensus 175 ~~I~~L~vIGGdgT~~~A~~L~ee~~~~g~~I~VIGIPKTIDNDI~~td~S~GFdTAv~--~~~~aI~~~~ 243 (459)
T PTZ00286 175 HGINILFTLGGDGTHRGALAIYKELRRRKLNISVVGIPKTIDNDIPIIDESFGFQTAVE--EAQNAIRAAY 243 (459)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccccCCCCCCcccCcCchHHHH--HHHHHHHHHH
Confidence 47899999999999998887665 35689999843 2788988765 4555565554
No 47
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=87.91 E-value=1.6 Score=46.12 Aligned_cols=89 Identities=20% Similarity=0.224 Sum_probs=52.4
Q ss_pred CcEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEEc
Q psy5950 171 PLTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICLG 250 (511)
Q Consensus 171 p~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvLG 250 (511)
.++++||+-..-. ....+.++.+.|++. ++.+.+-..+...+ ....+.+-...+. ..++|+||.+|
T Consensus 23 ~~r~livt~~~~~-~~g~~~~v~~~L~~~-gi~~~~~~~v~~~p------~~~~v~~~~~~~~------~~~~D~IIaiG 88 (375)
T cd08194 23 GKRPLIVTDKVMV-KLGLVDKLTDSLKKE-GIESAIFDDVVSEP------TDESVEEGVKLAK------EGGCDVIIALG 88 (375)
T ss_pred CCeEEEEcCcchh-hcchHHHHHHHHHHC-CCeEEEECCCCCCc------CHHHHHHHHHHHH------hcCCCEEEEeC
Confidence 3689999843211 123667888999754 45554433333222 1111211111111 24789999999
Q ss_pred CchhHHHHHHHcC-------------------CCCCcEEEEeC
Q psy5950 251 GDGTLLYASLLFQ-------------------QSVPPVMAFHL 274 (511)
Q Consensus 251 GDGTlL~Aar~~~-------------------~~~~PILGINl 274 (511)
| |+.+-+++.+. ...+|++.|.+
T Consensus 89 G-GS~~D~AKaia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPT 130 (375)
T cd08194 89 G-GSPIDTAKAIAVLATNGGSIRDYKGPRIVDKPGLPLIAIPT 130 (375)
T ss_pred C-chHHHHHHHHHHHHhCCCCHHHHhCcccccCCCCCEEEECC
Confidence 9 99999998653 23578888875
No 48
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=87.60 E-value=0.55 Score=51.43 Aligned_cols=54 Identities=28% Similarity=0.370 Sum_probs=39.9
Q ss_pred CCccEEEEEcCchhHHHHHHHcC-----CCCCcEEEEeC----------CCccccccCCcccHHHHHHHHH
Q psy5950 241 DKIDFIICLGGDGTLLYASLLFQ-----QSVPPVMAFHL----------GSLGFLTPFEFENFEDQVTNVL 296 (511)
Q Consensus 241 ~~~DlVIvLGGDGTlL~Aar~~~-----~~~~PILGINl----------G~LGFLt~~~~~~~~~~L~~il 296 (511)
.++|.+|++|||||+-.|.++.. ...+||+||-- =++||-|.++ ...++|+++.
T Consensus 171 ~~I~~L~vIGGdgT~~gA~~l~ee~~~~g~~I~VIGIPKTIDNDi~~td~S~GFdTAv~--~a~~aI~~~~ 239 (443)
T PRK06830 171 MNINILFVIGGDGTLRGASAIAEEIERRGLKISVIGIPKTIDNDINFIQKSFGFETAVE--KATEAIRCAH 239 (443)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccccCCCCcCcccCCCHHHHHH--HHHHHHHHHH
Confidence 47899999999999988877654 35689999843 2788888765 4455555553
No 49
>PLN02884 6-phosphofructokinase
Probab=86.73 E-value=0.54 Score=51.01 Aligned_cols=55 Identities=22% Similarity=0.325 Sum_probs=40.9
Q ss_pred CCccEEEEEcCchhHHHHHHHcC-----CCCCcEEEEeC-------C---CccccccCCcccHHHHHHHHHc
Q psy5950 241 DKIDFIICLGGDGTLLYASLLFQ-----QSVPPVMAFHL-------G---SLGFLTPFEFENFEDQVTNVLE 297 (511)
Q Consensus 241 ~~~DlVIvLGGDGTlL~Aar~~~-----~~~~PILGINl-------G---~LGFLt~~~~~~~~~~L~~il~ 297 (511)
.++|.+|++|||||+-.|.++.. ...+||+||-- | ++||-|.++ .+.++|+++..
T Consensus 142 ~~Id~LivIGGdgS~~~a~~L~~~~~~~g~~i~vIGIPkTIDNDi~~tD~TiGFdTAv~--~~~~ai~~l~~ 211 (411)
T PLN02884 142 RGINMLFVLGGNGTHAGANAIHNECRKRKMKVSVVGVPKTIDNDILLMDKTFGFDTAVE--EAQRAINSAYI 211 (411)
T ss_pred cCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEeccccccCCCcCcccCCCHHHHHH--HHHHHHHHHHH
Confidence 47899999999999988877654 24599999832 2 788888765 45666666543
No 50
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=86.61 E-value=1.4 Score=46.64 Aligned_cols=77 Identities=22% Similarity=0.254 Sum_probs=44.5
Q ss_pred cEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEEcC
Q psy5950 172 LTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICLGG 251 (511)
Q Consensus 172 ~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvLGG 251 (511)
++++||.-..-......+.++.+.|++. ++.+.+-..+...+ .+..+.+-...+. ..++|+||.+||
T Consensus 24 ~r~livt~~~~~~~~g~~~~v~~~L~~~-g~~~~~~~~v~~~p------~~~~v~~~~~~~~------~~~~D~IIavGG 90 (375)
T cd08179 24 KKAFIVTGGGSMKKFGFLDKVEAYLKEA-GIEVEVFEGVEPDP------SVETVLKGAEAMR------EFEPDWIIALGG 90 (375)
T ss_pred CeEEEEeCchHHHhCChHHHHHHHHHHc-CCeEEEeCCCCCCc------CHHHHHHHHHHHH------hcCCCEEEEeCC
Confidence 6889998432233345667888989754 55554333322222 2222211111111 247899999999
Q ss_pred chhHHHHHHHc
Q psy5950 252 DGTLLYASLLF 262 (511)
Q Consensus 252 DGTlL~Aar~~ 262 (511)
|+.+-+++.+
T Consensus 91 -GSviD~AK~i 100 (375)
T cd08179 91 -GSPIDAAKAM 100 (375)
T ss_pred -ccHHHHHHHH
Confidence 8999998875
No 51
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=86.51 E-value=1.8 Score=45.95 Aligned_cols=78 Identities=14% Similarity=0.097 Sum_probs=45.0
Q ss_pred CcEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEEc
Q psy5950 171 PLTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICLG 250 (511)
Q Consensus 171 p~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvLG 250 (511)
.++++||+-..-......+.++.+.|++. ++.+.+-..+..++ .+..+.+-...+. ..++|+||.+|
T Consensus 26 ~kr~livtd~~~~~~~g~~~~v~~~L~~~-gi~~~~f~~v~~~p------~~~~v~~~~~~~~------~~~~D~IIaiG 92 (383)
T cd08186 26 ISKVLLVTGKSAYKKSGAWDKVEPALDEH-GIEYVLYNKVTPNP------TVDQVDEAAKLGR------EFGAQAVIAIG 92 (383)
T ss_pred CCEEEEEcCccHHhhcChHHHHHHHHHHc-CCeEEEeCCCCCCC------CHHHHHHHHHHHH------HcCCCEEEEeC
Confidence 47899998433223344567888889754 55544433332222 2222211111111 23679999999
Q ss_pred CchhHHHHHHHc
Q psy5950 251 GDGTLLYASLLF 262 (511)
Q Consensus 251 GDGTlL~Aar~~ 262 (511)
| |+++-+++.+
T Consensus 93 G-GS~iD~aK~i 103 (383)
T cd08186 93 G-GSPIDSAKSA 103 (383)
T ss_pred C-ccHHHHHHHH
Confidence 9 9999988865
No 52
>PLN02564 6-phosphofructokinase
Probab=86.49 E-value=0.68 Score=51.24 Aligned_cols=55 Identities=25% Similarity=0.334 Sum_probs=40.0
Q ss_pred CCccEEEEEcCchhHHHHHHHcC-----CCCCcEEEEeC----------CCccccccCCcccHHHHHHHHHc
Q psy5950 241 DKIDFIICLGGDGTLLYASLLFQ-----QSVPPVMAFHL----------GSLGFLTPFEFENFEDQVTNVLE 297 (511)
Q Consensus 241 ~~~DlVIvLGGDGTlL~Aar~~~-----~~~~PILGINl----------G~LGFLt~~~~~~~~~~L~~il~ 297 (511)
.++|.+|++|||||+-.|..+.. ...++|+||-- =++||-|.++ .+.++|+++..
T Consensus 175 ~~Id~LivIGGDGS~~gA~~L~e~~~~~g~~i~VIGIPKTIDNDI~~tD~T~GFdTAv~--~~~~aI~~i~~ 244 (484)
T PLN02564 175 RGINQVYIIGGDGTQKGASVIYEEIRRRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVE--EAQRAINAAHV 244 (484)
T ss_pred hCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEEecccccCCCcCcccCCCHHHHHH--HHHHHHHHHHH
Confidence 37899999999999998887664 23455999843 2788888765 45666666643
No 53
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=86.36 E-value=1.5 Score=46.39 Aligned_cols=76 Identities=24% Similarity=0.304 Sum_probs=43.6
Q ss_pred cEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEEcC
Q psy5950 172 LTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICLGG 251 (511)
Q Consensus 172 ~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvLGG 251 (511)
++++||.-..-. ....+.++.+.|.+. ++.+.+...+...+. ...+.+-...+. ..++|+||.+||
T Consensus 29 ~~~lvv~~~~~~-~~~~~~~v~~~L~~~-~~~~~~f~~v~~~p~------~~~v~~~~~~~~------~~~~D~IIavGG 94 (377)
T cd08176 29 KKALIVTDKGLV-KIGVVEKVTDVLDEA-GIDYVIYDGVKPNPT------ITNVKDGLAVFK------KEGCDFIISIGG 94 (377)
T ss_pred CeEEEECCchHh-hcCcHHHHHHHHHHc-CCeEEEeCCCCCCCC------HHHHHHHHHHHH------hcCCCEEEEeCC
Confidence 689999843211 124677899999754 555544333222221 111111111110 246899999999
Q ss_pred chhHHHHHHHc
Q psy5950 252 DGTLLYASLLF 262 (511)
Q Consensus 252 DGTlL~Aar~~ 262 (511)
|+++-+++.+
T Consensus 95 -GS~iD~aK~i 104 (377)
T cd08176 95 -GSPHDCAKAI 104 (377)
T ss_pred -cHHHHHHHHH
Confidence 9999999865
No 54
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=86.30 E-value=0.68 Score=50.16 Aligned_cols=71 Identities=27% Similarity=0.237 Sum_probs=47.7
Q ss_pred CCccEEEEEcCchhHHHHHHHcC-----CCCCcEEEEeC-------C---CccccccCCcccHHHHHHHHHcCCcEEEEE
Q psy5950 241 DKIDFIICLGGDGTLLYASLLFQ-----QSVPPVMAFHL-------G---SLGFLTPFEFENFEDQVTNVLEGHAALTLR 305 (511)
Q Consensus 241 ~~~DlVIvLGGDGTlL~Aar~~~-----~~~~PILGINl-------G---~LGFLt~~~~~~~~~~L~~il~G~~~ie~R 305 (511)
.++|.+|++|||||+-.|.++.. .+++||+||-- | ++||-|..+ .+.++++++..-. .-..|
T Consensus 111 ~~Id~Li~IGGdgS~~~a~~L~~~~~~~g~~i~vvgIPkTIDNDl~~td~t~Gf~TA~~--~~~~ai~~l~~ta-~s~~r 187 (403)
T PRK06555 111 DGVDILHTIGGDDTNTTAADLAAYLAENGYDLTVVGLPKTIDNDVVPIRQSLGAWTAAE--QGARFFDNVINEH-SANPR 187 (403)
T ss_pred cCCCEEEEECChhHHHHHHHHHHHHHHhCCCceEEEeeeeeeCCCCCccCCcCHHHHHH--HHHHHHHHHHHHH-HhcCC
Confidence 37899999999999999888754 35799999843 2 788888755 4556666665421 22224
Q ss_pred eeEEEEEEe
Q psy5950 306 SRLRCIIMR 314 (511)
Q Consensus 306 ~rL~v~V~~ 314 (511)
..+-++++.
T Consensus 188 ~~~vvEvMG 196 (403)
T PRK06555 188 MLIIHEVMG 196 (403)
T ss_pred EEEEEEccC
Confidence 444445654
No 55
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=86.03 E-value=2.2 Score=45.17 Aligned_cols=77 Identities=19% Similarity=0.248 Sum_probs=45.8
Q ss_pred cEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEEcC
Q psy5950 172 LTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICLGG 251 (511)
Q Consensus 172 ~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvLGG 251 (511)
++++||+-.........+.++.+.|++. ++++.+-..+...+ .+..+.+-...+. ..++|+||.+||
T Consensus 26 ~r~livt~~~~~~~~g~~~~v~~~L~~~-~~~~~~~~~v~~~p------~~~~v~~~~~~~~------~~~~D~IiavGG 92 (380)
T cd08185 26 KKALIVTGNGSSKKTGYLDRVIELLKQA-GVEVVVFDKVEPNP------TTTTVMEGAALAR------EEGCDFVVGLGG 92 (380)
T ss_pred CeEEEEeCCCchhhccHHHHHHHHHHHc-CCeEEEeCCccCCC------CHHHHHHHHHHHH------HcCCCEEEEeCC
Confidence 6899999543222346778899999764 55554433332222 2222221111110 247899999999
Q ss_pred chhHHHHHHHc
Q psy5950 252 DGTLLYASLLF 262 (511)
Q Consensus 252 DGTlL~Aar~~ 262 (511)
|..+-+++.+
T Consensus 93 -GS~iD~aK~i 102 (380)
T cd08185 93 -GSSMDTAKAI 102 (380)
T ss_pred -ccHHHHHHHH
Confidence 8999988865
No 56
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=85.93 E-value=0.76 Score=48.16 Aligned_cols=54 Identities=24% Similarity=0.463 Sum_probs=40.3
Q ss_pred CCccEEEEEcCchhHHHHHHHcCCCCCcEEEEeC-------C---CccccccCCcccHHHHHHHHHc
Q psy5950 241 DKIDFIICLGGDGTLLYASLLFQQSVPPVMAFHL-------G---SLGFLTPFEFENFEDQVTNVLE 297 (511)
Q Consensus 241 ~~~DlVIvLGGDGTlL~Aar~~~~~~~PILGINl-------G---~LGFLt~~~~~~~~~~L~~il~ 297 (511)
.++|.+|++|||||+-.|.++.. .++||+||-. | ++||-|.++ .+.+.++++..
T Consensus 91 ~~Id~Li~IGGdgs~~~a~~L~e-~~i~vigiPkTIDNDi~gtd~t~Gf~TA~~--~~~~~i~~i~~ 154 (317)
T cd00763 91 HGIDALVVIGGDGSYMGAMRLTE-HGFPCVGLPGTIDNDIPGTDYTIGFDTALN--TVVEAIDRIRD 154 (317)
T ss_pred cCCCEEEEECCchHHHHHHHHHH-cCCCEEEecccccCCCCCCccCCCHHHHHH--HHHHHHHHHHH
Confidence 47899999999999988877654 4799999843 3 789988765 34455665543
No 57
>PRK14072 6-phosphofructokinase; Provisional
Probab=85.83 E-value=0.71 Score=50.11 Aligned_cols=53 Identities=15% Similarity=0.154 Sum_probs=39.2
Q ss_pred CCccEEEEEcCchhHHHHHHHcC-----CCCCcEEEEeC----------CCccccccCCcccHHHHHHHH
Q psy5950 241 DKIDFIICLGGDGTLLYASLLFQ-----QSVPPVMAFHL----------GSLGFLTPFEFENFEDQVTNV 295 (511)
Q Consensus 241 ~~~DlVIvLGGDGTlL~Aar~~~-----~~~~PILGINl----------G~LGFLt~~~~~~~~~~L~~i 295 (511)
.++|.+|++|||||+-.|.++.. .+.+||+||-- -++||-|..+ .+.++|.++
T Consensus 102 ~~Id~LivIGGdgS~~~a~~L~e~~~~~g~~i~vIgIPkTIDNDl~gtD~t~GF~TA~~--~i~~ai~~l 169 (416)
T PRK14072 102 HDIGYFFYNGGNDSMDTALKVSQLAKKMGYPIRCIGIPKTIDNDLPGTDHCPGFGSAAK--YIATSVLEA 169 (416)
T ss_pred cCCCEEEEECChHHHHHHHHHHHHHHHhCCCceEEEeeecccCCCCCCCCCCChHHHHH--HHHHHHHHH
Confidence 47899999999999988887654 34599999843 3778888755 344555555
No 58
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=85.77 E-value=1.8 Score=45.98 Aligned_cols=89 Identities=17% Similarity=0.272 Sum_probs=51.6
Q ss_pred cEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEEcC
Q psy5950 172 LTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICLGG 251 (511)
Q Consensus 172 ~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvLGG 251 (511)
++++||.-...-.....+.++.+.|++. ++.+.+-..+..++. ...+.+-+..+. ..++|+||.+||
T Consensus 29 ~r~livt~~~~~~~~~~~~~v~~~L~~~-g~~~~~~~~v~~~p~------~~~v~~~~~~~~------~~~~D~IIaiGG 95 (382)
T cd08187 29 KKVLLVYGGGSIKKNGLYDRVIASLKEA-GIEVVELGGVEPNPR------LETVREGIELCK------EEKVDFILAVGG 95 (382)
T ss_pred CEEEEEeCCcHHHhcCcHHHHHHHHHHc-CCeEEEECCccCCCC------HHHHHHHHHHHH------HcCCCEEEEeCC
Confidence 7899998432222234567788888754 455543333322221 111111111111 246899999999
Q ss_pred chhHHHHHHHcCC-------------------CCCcEEEEeC
Q psy5950 252 DGTLLYASLLFQQ-------------------SVPPVMAFHL 274 (511)
Q Consensus 252 DGTlL~Aar~~~~-------------------~~~PILGINl 274 (511)
|+.+-+++.+.- ..+|++.|..
T Consensus 96 -GS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPT 136 (382)
T cd08187 96 -GSVIDSAKAIAAGAPYDGDVWDFFTGKAKIEKALPVGTVLT 136 (382)
T ss_pred -hHHHHHHHHHHhHhhCCCCHHHHhcccCCCCCCCCEEEEeC
Confidence 999999986532 2568888875
No 59
>KOG4435|consensus
Probab=85.58 E-value=1.7 Score=47.24 Aligned_cols=86 Identities=16% Similarity=0.128 Sum_probs=44.1
Q ss_pred CCccEEEEEcCchhHHHHHHHcCC---CCCcEEEE-----eCCCccccc----cCC-cccHHHHHHHHHcCCcEEEEEee
Q psy5950 241 DKIDFIICLGGDGTLLYASLLFQQ---SVPPVMAF-----HLGSLGFLT----PFE-FENFEDQVTNVLEGHAALTLRSR 307 (511)
Q Consensus 241 ~~~DlVIvLGGDGTlL~Aar~~~~---~~~PILGI-----NlG~LGFLt----~~~-~~~~~~~L~~il~G~~~ie~R~r 307 (511)
...|.|+|.|||||+=.+.--+.+ ...||-=+ |++.---|- +.+ ...+-++...+++++-. +.
T Consensus 115 t~~Dii~VaGGDGT~~eVVTGi~Rrr~~~~pv~~~P~G~~~l~~~s~l~~vfe~~d~V~h~~~a~~avikde~k----sv 190 (535)
T KOG4435|consen 115 TQEDIIYVAGGDGTIGEVVTGIFRRRKAQLPVGFYPGGYDNLWLKSMLPSVFENSDDVRHACEAAMAVIKDEKK----SV 190 (535)
T ss_pred cCCCeEEEecCCCcHHHhhHHHHhcccccCceeeccCccchHhhhhhchhhhccchHHHHHHHHHHHHhccccc----ce
Confidence 345999999999998766542222 23444222 222111111 111 23445566777777532 33
Q ss_pred EEEEEEeCCcccccCCCCCCccceeeeEEe
Q psy5950 308 LRCIIMRKNEETAKDAKPPTNILVLNEVVI 337 (511)
Q Consensus 308 L~v~V~~~~~~~~~~~~~~~~~~ALNEVvI 337 (511)
..-.|...+.. ....++||++.-
T Consensus 191 ~~fdv~~~gs~-------l~P~fgl~glsw 213 (535)
T KOG4435|consen 191 YAFDVTTEGST-------LAPEFGLGGLSW 213 (535)
T ss_pred EEEEeccCCCc-------cccccccCccch
Confidence 33334333332 334588998854
No 60
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=85.54 E-value=2 Score=45.22 Aligned_cols=77 Identities=17% Similarity=0.193 Sum_probs=43.7
Q ss_pred cEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEEcC
Q psy5950 172 LTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICLGG 251 (511)
Q Consensus 172 ~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvLGG 251 (511)
++++||.-..-......+.++.+.|.+. ++++.+-..+..++ ....+.+-...+ ...++|+||.+||
T Consensus 26 ~r~lvVt~~~~~~~~g~~~~v~~~L~~~-g~~~~~~~~v~~~p------~~~~v~~~~~~~------~~~~~D~IIavGG 92 (357)
T cd08181 26 KRALIVTGKSSAKKNGSLDDVTKALEEL-GIEYEIFDEVEENP------SLETIMEAVEIA------KKFNADFVIGIGG 92 (357)
T ss_pred CEEEEEeCCchHhhcCcHHHHHHHHHHc-CCeEEEeCCCCCCc------CHHHHHHHHHHH------HhcCCCEEEEeCC
Confidence 6899998433222234567788888754 44544333222222 111121111111 1246899999999
Q ss_pred chhHHHHHHHc
Q psy5950 252 DGTLLYASLLF 262 (511)
Q Consensus 252 DGTlL~Aar~~ 262 (511)
|+++-+++.+
T Consensus 93 -GSviD~aK~i 102 (357)
T cd08181 93 -GSPLDAAKAI 102 (357)
T ss_pred -chHHHHHHHH
Confidence 9999999853
No 61
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=85.29 E-value=2.4 Score=44.37 Aligned_cols=97 Identities=16% Similarity=0.155 Sum_probs=56.6
Q ss_pred cEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEEcC
Q psy5950 172 LTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICLGG 251 (511)
Q Consensus 172 ~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvLGG 251 (511)
++++||.-. ........++.+.|++. ++.+.+-..+..++ ....+.+-...+ ...++|+||.+||
T Consensus 23 ~r~liv~d~--~~~~~~~~~v~~~l~~~-~~~~~~~~~~~~~p------~~~~v~~~~~~~------~~~~~d~iiavGG 87 (345)
T cd08171 23 KKVVVIGGK--TALAAAKDKIKAALEQS-GIEITDFIWYGGES------TYENVERLKKNP------AVQEADMIFAVGG 87 (345)
T ss_pred CEEEEEeCH--HHHHHHHHHHHHHHHHC-CCeEEEEEecCCCC------CHHHHHHHHHHH------hhcCCCEEEEeCC
Confidence 689999832 22334567788888754 44443221111111 111111111111 1347899999999
Q ss_pred chhHHHHHHHcCC-CCCcEEEEeC--CCccccccCC
Q psy5950 252 DGTLLYASLLFQQ-SVPPVMAFHL--GSLGFLTPFE 284 (511)
Q Consensus 252 DGTlL~Aar~~~~-~~~PILGINl--G~LGFLt~~~ 284 (511)
|+++-+++.+.. ..+|++.|.. |+=+..+.+.
T Consensus 88 -Gs~~D~aK~ia~~~~~p~i~VPTt~gtgse~t~~a 122 (345)
T cd08171 88 -GKAIDTVKVLADKLGKPVFTFPTIASNCAAVTAVS 122 (345)
T ss_pred -cHHHHHHHHHHHHcCCCEEEecCccccCccccceE
Confidence 999999997653 4789999986 5555555554
No 62
>KOG0782|consensus
Probab=85.27 E-value=1.1 Score=50.15 Aligned_cols=68 Identities=28% Similarity=0.325 Sum_probs=42.9
Q ss_pred EEEEEcCchhH---HHHHHHcCCC-CCcEEEEeCC-------CccccccCCcccHHHHHHHHHcCCcEEEEEeeEEEEE
Q psy5950 245 FIICLGGDGTL---LYASLLFQQS-VPPVMAFHLG-------SLGFLTPFEFENFEDQVTNVLEGHAALTLRSRLRCII 312 (511)
Q Consensus 245 lVIvLGGDGTl---L~Aar~~~~~-~~PILGINlG-------~LGFLt~~~~~~~~~~L~~il~G~~~ie~R~rL~v~V 312 (511)
-|++-|||||+ |.+.-.++-. .||+-=.-+| .||.=-.+.-+-+.+.+..|..|...-..|-+|.++-
T Consensus 419 RILaCGGDGTVGWiLStLD~L~l~p~PPvailPLGTGNDLARtlnWGGgytDEPvSkil~~ve~gtvVqLDRW~lhvEp 497 (1004)
T KOG0782|consen 419 RILACGGDGTVGWILSTLDNLNLPPYPPVAILPLGTGNDLARTLNWGGGYTDEPVSKILQAVEHGTVVQLDRWRLHVEP 497 (1004)
T ss_pred EEEEecCCCceeehhhhhhhcCCCCCCCeeEeecCCcchHHHhcccCCCcCcchHHHHHHHHhcCcEEeeeeeeecccC
Confidence 47889999996 4444444433 3444322343 3333334444557788889999998877888888753
No 63
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=84.92 E-value=3.8 Score=39.21 Aligned_cols=35 Identities=14% Similarity=0.282 Sum_probs=24.5
Q ss_pred CCccEEEEEcCch---h---HHHHHHHcCCCCCcEEEEeCCC
Q psy5950 241 DKIDFIICLGGDG---T---LLYASLLFQQSVPPVMAFHLGS 276 (511)
Q Consensus 241 ~~~DlVIvLGGDG---T---lL~Aar~~~~~~~PILGINlG~ 276 (511)
+.+|.||+.||-| . ++...+.+ ..++|||||-+|.
T Consensus 42 ~~~d~iIi~gGp~~~~~~~~~~~~i~~~-~~~~PiLGIClG~ 82 (190)
T PRK06895 42 ENFSHILISPGPDVPRAYPQLFAMLERY-HQHKSILGVCLGH 82 (190)
T ss_pred ccCCEEEECCCCCChHHhhHHHHHHHHh-cCCCCEEEEcHHH
Confidence 3579999999988 2 22333332 3478999999984
No 64
>PRK06186 hypothetical protein; Validated
Probab=84.60 E-value=2.4 Score=42.78 Aligned_cols=36 Identities=22% Similarity=0.207 Sum_probs=30.1
Q ss_pred CCCccEEEEEcCchh-----HHHHHHHcCCCCCcEEEEeCC
Q psy5950 240 TDKIDFIICLGGDGT-----LLYASLLFQQSVPPVMAFHLG 275 (511)
Q Consensus 240 ~~~~DlVIvLGGDGT-----lL~Aar~~~~~~~PILGINlG 275 (511)
.+.+|-|++.||=|. .+.|++.....++|+|||-+|
T Consensus 51 l~~~dgilvpgGfg~rg~~Gki~ai~~Are~~iP~LGIClG 91 (229)
T PRK06186 51 LAGFDGIWCVPGSPYRNDDGALTAIRFARENGIPFLGTCGG 91 (229)
T ss_pred HhhCCeeEeCCCCCcccHhHHHHHHHHHHHcCCCeEeechh
Confidence 356799999999664 577888888889999999988
No 65
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=84.00 E-value=2.1 Score=46.15 Aligned_cols=78 Identities=21% Similarity=0.192 Sum_probs=52.1
Q ss_pred CCcEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEE
Q psy5950 170 PPLTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICL 249 (511)
Q Consensus 170 ~p~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvL 249 (511)
..++++||+-+. -.-...+.++.+.|.+. ++++.+..++..+|.+ ..+.+-...+. ..++|.||.|
T Consensus 28 g~~r~liVTd~~-~~~~g~~~~v~~~L~~~-~i~~~if~~v~p~P~~------~~v~~~~~~~~------~~~~D~iIal 93 (377)
T COG1454 28 GAKRALIVTDRG-LAKLGLLDKVLDSLDAA-GIEYEVFDEVEPEPTI------ETVEAGAEVAR------EFGPDTIIAL 93 (377)
T ss_pred CCCceEEEECCc-cccchhHHHHHHHHHhc-CCeEEEecCCCCCCCH------HHHHHHHHHHH------hcCCCEEEEe
Confidence 347899999654 33456789999999865 5677776666654432 22221111111 3578999999
Q ss_pred cCchhHHHHHHHc
Q psy5950 250 GGDGTLLYASLLF 262 (511)
Q Consensus 250 GGDGTlL~Aar~~ 262 (511)
|| |..+-+|+..
T Consensus 94 GG-GS~~D~AK~i 105 (377)
T COG1454 94 GG-GSVIDAAKAI 105 (377)
T ss_pred CC-ccHHHHHHHH
Confidence 99 9999998864
No 66
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=83.69 E-value=3 Score=43.89 Aligned_cols=74 Identities=19% Similarity=0.190 Sum_probs=42.5
Q ss_pred CcEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEEc
Q psy5950 171 PLTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICLG 250 (511)
Q Consensus 171 p~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvLG 250 (511)
.++++||+- ..+. ....+.+.|++. ++.+.+-..+...+ .+..+.+-...+. ..++|+||.+|
T Consensus 23 ~~~~livtd---~~~~-~~~~~~~~l~~~-~~~~~~~~~~~~~p------~~~~v~~~~~~~~------~~~~D~IIavG 85 (367)
T cd08182 23 GKRVLLVTG---PRSA-IASGLTDILKPL-GTLVVVFDDVQPNP------DLEDLAAGIRLLR------EFGPDAVLAVG 85 (367)
T ss_pred CCeEEEEeC---chHH-HHHHHHHHHHHc-CCeEEEEcCcCCCc------CHHHHHHHHHHHH------hcCcCEEEEeC
Confidence 368999983 3233 456677888754 45554443333222 2222221111111 24689999999
Q ss_pred CchhHHHHHHHc
Q psy5950 251 GDGTLLYASLLF 262 (511)
Q Consensus 251 GDGTlL~Aar~~ 262 (511)
| |+.+.+++.+
T Consensus 86 G-Gs~~D~aK~i 96 (367)
T cd08182 86 G-GSVLDTAKAL 96 (367)
T ss_pred C-cHHHHHHHHH
Confidence 9 9999998865
No 67
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=83.20 E-value=2.8 Score=44.38 Aligned_cols=77 Identities=25% Similarity=0.243 Sum_probs=44.2
Q ss_pred CcEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEEc
Q psy5950 171 PLTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICLG 250 (511)
Q Consensus 171 p~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvLG 250 (511)
.++++||+-.. -.....+.++.+.|++. ++++.+-..+... +....+.+-...+. ..++|+||.+|
T Consensus 26 ~~~~livt~~~-~~~~~~~~~v~~~L~~~-~~~~~~~~~v~~~------p~~~~v~~~~~~~~------~~~~D~IIaiG 91 (376)
T cd08193 26 AKRVLVVTDPG-ILKAGLIDPLLASLEAA-GIEVTVFDDVEAD------PPEAVVEAAVEAAR------AAGADGVIGFG 91 (376)
T ss_pred CCeEEEEcCcc-hhhCccHHHHHHHHHHc-CCeEEEECCCCCC------cCHHHHHHHHHHHH------hcCCCEEEEeC
Confidence 36899998432 11233567888888754 4555433322222 22222222111111 24789999999
Q ss_pred CchhHHHHHHHc
Q psy5950 251 GDGTLLYASLLF 262 (511)
Q Consensus 251 GDGTlL~Aar~~ 262 (511)
| |+++-+++.+
T Consensus 92 G-Gs~iD~aK~i 102 (376)
T cd08193 92 G-GSSMDVAKLV 102 (376)
T ss_pred C-chHHHHHHHH
Confidence 9 9999999865
No 68
>PRK07053 glutamine amidotransferase; Provisional
Probab=82.82 E-value=6.8 Score=39.17 Aligned_cols=81 Identities=19% Similarity=0.112 Sum_probs=46.2
Q ss_pred CCcEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEE
Q psy5950 170 PPLTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICL 249 (511)
Q Consensus 170 ~p~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvL 249 (511)
+.++|+||.+...+.. ..+.+||.+.+ ..+-+-.....+ +. ..+ ..++|.+|+.
T Consensus 1 ~m~~ilviqh~~~e~~----g~i~~~L~~~g-~~~~v~~~~~~~--------~~------------~~~-~~~~d~lii~ 54 (234)
T PRK07053 1 MMKTAVAIRHVAFEDL----GSFEQVLGARG-YRVRYVDVGVDD--------LE------------TLD-ALEPDLLVVL 54 (234)
T ss_pred CCceEEEEECCCCCCC----hHHHHHHHHCC-CeEEEEecCCCc--------cC------------CCC-ccCCCEEEEC
Confidence 3568999998655543 34788887653 333221100000 00 011 2458999999
Q ss_pred cCchh------------HHHHHHHcCCCCCcEEEEeCCC
Q psy5950 250 GGDGT------------LLYASLLFQQSVPPVMAFHLGS 276 (511)
Q Consensus 250 GGDGT------------lL~Aar~~~~~~~PILGINlG~ 276 (511)
||-.. ++...+.+...++|||||-+|.
T Consensus 55 Ggp~~~~d~~~~p~~~~~~~~i~~~~~~~~PvlGIC~G~ 93 (234)
T PRK07053 55 GGPIGVYDDELYPFLAPEIALLRQRLAAGLPTLGICLGA 93 (234)
T ss_pred CCCCCCCCCCcCCcHHHHHHHHHHHHHCCCCEEEECccH
Confidence 97532 2333343445688999999985
No 69
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes []. One enzyme that utilises this reaction is phosphofructokinase (PFK), which catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6- bisphosphate, a key regulatory step in the glycolytic pathway [, ]. PFK exists as a homotetramer in bacteria and mammals (where each monomer possesses 2 similar domains), and as an octomer in yeast (where there are 4 alpha- (PFK1) and 4 beta-chains (PFK2), the latter, like the mammalian monomers, possessing 2 similar domains []). PFK is ~300 amino acids in length, and structural studies of the bacterial enzyme have shown it comprises two similar (alpha/beta) lobes: one involved in ATP binding and the other housing both the substrate-binding site and the allosteric site (a regulatory binding site distinct from the active site, but that affects enzyme activity). The identical tetramer subunits adopt 2 different conformations: in a 'closed' state, the bound magnesium ion bridges the phosphoryl groups of the enzyme products (ADP and fructose-1,6- bisphosphate); and in an 'open' state, the magnesium ion binds only the ADP [], as the 2 products are now further apart. These conformations are thought to be successive stages of a reaction pathway that requires subunit closure to bring the 2 molecules sufficiently close to react []. Deficiency in PFK leads to glycogenosis type VII (Tauri's disease), an autosomal recessive disorder characterised by severe nausea, vomiting, muscle cramps and myoglobinuria in response to bursts of intense or vigorous exercise []. Sufferers are usually able to lead a reasonably ordinary life by learning to adjust activity levels [].; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex; PDB: 3O8O_E 3OPY_H 1PFK_A 2PFK_D 1MTO_F 3U39_C 6PFK_A 4PFK_A 3PFK_A 3HNO_B ....
Probab=82.71 E-value=0.61 Score=47.97 Aligned_cols=54 Identities=31% Similarity=0.473 Sum_probs=38.1
Q ss_pred CCccEEEEEcCchhHHHHHHHcCCCCCcEEEEeC-------C---CccccccCCcccHHHHHHHHH
Q psy5950 241 DKIDFIICLGGDGTLLYASLLFQQSVPPVMAFHL-------G---SLGFLTPFEFENFEDQVTNVL 296 (511)
Q Consensus 241 ~~~DlVIvLGGDGTlL~Aar~~~~~~~PILGINl-------G---~LGFLt~~~~~~~~~~L~~il 296 (511)
.++|.+|++|||||+-.|..+.+...+||+||-. | ++||-|..+ .+-++++++.
T Consensus 91 ~~Id~Li~IGG~gs~~~a~~L~~~~~i~vigiPkTIDNDi~gtd~siGf~TA~~--~~~~~i~~i~ 154 (282)
T PF00365_consen 91 LGIDALIVIGGDGSMKGAHKLSEEFGIPVIGIPKTIDNDIPGTDYSIGFDTAVN--YIAEAIDNIK 154 (282)
T ss_dssp TTESEEEEEESHHHHHHHHHHHHHHHSEEEEEEEETTSSCTTSSS-BTHHHHHH--HHHHHHHHHH
T ss_pred hCCCEEEEecCCCHHHHHHHHHhcCceEEEEEeccccCCcCCCCCCcccCchhH--HHHHHHHHHH
Confidence 4789999999999988777765455689999843 3 678877654 3445555543
No 70
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=82.46 E-value=2.4 Score=44.63 Aligned_cols=78 Identities=18% Similarity=0.275 Sum_probs=43.9
Q ss_pred CcEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEEc
Q psy5950 171 PLTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICLG 250 (511)
Q Consensus 171 p~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvLG 250 (511)
.++++||.-..-.. .....++.+.|.+. ++.+.+-..+...+ ....+.+-+..+. ..++|+||.+|
T Consensus 23 ~~~~lvv~~~~~~~-~~~~~~v~~~L~~~-~~~~~~~~~~~~~p------~~~~v~~~~~~~~------~~~~d~IiaiG 88 (370)
T cd08551 23 GRKALIVTDPGLVK-TGVLDKVIDSLKEA-GIEVVIFDGVEPNP------TLSNVDAAVAAYR------EEGCDGVIAVG 88 (370)
T ss_pred CCeEEEEeCcchhh-CccHHHHHHHHHHc-CCeEEEECCCCCCC------CHHHHHHHHHHHH------hcCCCEEEEeC
Confidence 46899998433222 25667888888754 44444332222211 1111211111110 24689999999
Q ss_pred CchhHHHHHHHcC
Q psy5950 251 GDGTLLYASLLFQ 263 (511)
Q Consensus 251 GDGTlL~Aar~~~ 263 (511)
| |+++.+++.+.
T Consensus 89 G-Gs~~D~AK~va 100 (370)
T cd08551 89 G-GSVLDTAKAIA 100 (370)
T ss_pred C-chHHHHHHHHH
Confidence 9 99999998753
No 71
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=82.02 E-value=3 Score=44.51 Aligned_cols=78 Identities=15% Similarity=0.161 Sum_probs=45.6
Q ss_pred CcEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEEc
Q psy5950 171 PLTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICLG 250 (511)
Q Consensus 171 p~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvLG 250 (511)
-++++||+-.. -.....+.++.+.|++. ++.+.+-..+..+| .+..+.+-...+. ..++|+||.+|
T Consensus 31 ~~~~livt~~~-~~~~g~~~~v~~~L~~~-~i~~~~f~~v~~np------~~~~v~~~~~~~~------~~~~D~IiaiG 96 (383)
T PRK09860 31 FTRTLIVTDNM-LTKLGMAGDVQKALEER-NIFSVIYDGTQPNP------TTENVAAGLKLLK------ENNCDSVISLG 96 (383)
T ss_pred CCEEEEEcCcc-hhhCccHHHHHHHHHHc-CCeEEEeCCCCCCc------CHHHHHHHHHHHH------HcCCCEEEEeC
Confidence 36899998421 12234667889999754 55554443333222 1222211111111 25789999999
Q ss_pred CchhHHHHHHHcC
Q psy5950 251 GDGTLLYASLLFQ 263 (511)
Q Consensus 251 GDGTlL~Aar~~~ 263 (511)
| |..+-+++.+.
T Consensus 97 G-GS~iD~AK~ia 108 (383)
T PRK09860 97 G-GSPHDCAKGIA 108 (383)
T ss_pred C-chHHHHHHHHH
Confidence 9 89999998753
No 72
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=81.97 E-value=3.2 Score=42.83 Aligned_cols=87 Identities=22% Similarity=0.229 Sum_probs=49.9
Q ss_pred CcEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEEc
Q psy5950 171 PLTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICLG 250 (511)
Q Consensus 171 p~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvLG 250 (511)
.++++||+-..-. .....++.+.|.+. +.+.+......+ +.+..+.+-...+. ..++|+||.+|
T Consensus 23 ~~~~liv~~~~~~--~~~~~~v~~~l~~~--~~~~~~~~~~~~------p~~~~v~~~~~~~~------~~~~d~IIaiG 86 (332)
T cd07766 23 FDRALVVSDEGVV--KGVGEKVADSLKKL--IAVHIFDGVGPN------PTFEEVKEAVERAR------AAEVDAVIAVG 86 (332)
T ss_pred CCeEEEEeCCchh--hhHHHHHHHHHHhc--CcEEEeCCcCCC------cCHHHHHHHHHHHH------hcCcCEEEEeC
Confidence 4689999842211 14566788888653 333222211111 11222211111111 24689999999
Q ss_pred CchhHHHHHHHcCC-C--CCcEEEEeC
Q psy5950 251 GDGTLLYASLLFQQ-S--VPPVMAFHL 274 (511)
Q Consensus 251 GDGTlL~Aar~~~~-~--~~PILGINl 274 (511)
| |+++-+++.+.. . .+|++.|-+
T Consensus 87 G-Gs~~D~aK~ia~~~~~~~p~i~iPT 112 (332)
T cd07766 87 G-GSTLDTAKAVAALLNRGLPIIIVPT 112 (332)
T ss_pred C-chHHHHHHHHHHHhcCCCCEEEEeC
Confidence 9 999999987643 2 789998875
No 73
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=81.52 E-value=3.8 Score=43.56 Aligned_cols=74 Identities=18% Similarity=0.314 Sum_probs=42.8
Q ss_pred cEEEEEecCCChhhHH--HHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEE
Q psy5950 172 LTVLVIKKVRDVSVLQ--PFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICL 249 (511)
Q Consensus 172 ~~VlII~K~~~~~~~~--~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvL 249 (511)
++++||+-. .+.+ ...++.+.|++. ++.+.+-..+..++ ....+.+-+..+ ...++|+||.+
T Consensus 31 ~~~lvvtd~---~~~~~g~~~~v~~~L~~~-g~~~~~~~~v~~~p------~~~~v~~~~~~~------~~~~~D~IIai 94 (382)
T PRK10624 31 KKALIVTDK---TLVKCGVVAKVTDVLDAA-GLAYEIYDGVKPNP------TIEVVKEGVEVF------KASGADYLIAI 94 (382)
T ss_pred CEEEEEeCc---chhhCcchHHHHHHHHHC-CCeEEEeCCCCCCc------CHHHHHHHHHHH------HhcCCCEEEEe
Confidence 689999842 3333 567888888754 44544433333222 122221111111 02468999999
Q ss_pred cCchhHHHHHHHc
Q psy5950 250 GGDGTLLYASLLF 262 (511)
Q Consensus 250 GGDGTlL~Aar~~ 262 (511)
|| |+.+-+++.+
T Consensus 95 GG-GS~iD~aK~i 106 (382)
T PRK10624 95 GG-GSPQDTCKAI 106 (382)
T ss_pred CC-hHHHHHHHHH
Confidence 99 9999999753
No 74
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=81.38 E-value=4.2 Score=42.49 Aligned_cols=86 Identities=15% Similarity=0.092 Sum_probs=51.4
Q ss_pred cEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEEcC
Q psy5950 172 LTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICLGG 251 (511)
Q Consensus 172 ~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvLGG 251 (511)
++++||+-. ........++.+.|.+. ++.+.++. +..+ +....+.+-...+ ...++|+||.+||
T Consensus 23 ~r~livt~~--~~~~~~~~~v~~~L~~~-~i~~~~~~-~~~~------p~~~~v~~~~~~~------~~~~~D~IIavGG 86 (351)
T cd08170 23 KRALIIADE--FVLDLVGAKIEESLAAA-GIDARFEV-FGGE------CTRAEIERLAEIA------RDNGADVVIGIGG 86 (351)
T ss_pred CeEEEEECH--HHHHHHHHHHHHHHHhC-CCeEEEEE-eCCc------CCHHHHHHHHHHH------hhcCCCEEEEecC
Confidence 789999832 22225667888888754 44442221 1111 1111121111111 1257899999999
Q ss_pred chhHHHHHHHcCC-CCCcEEEEeC
Q psy5950 252 DGTLLYASLLFQQ-SVPPVMAFHL 274 (511)
Q Consensus 252 DGTlL~Aar~~~~-~~~PILGINl 274 (511)
|+.+-+++.+.. ..+|++.|-.
T Consensus 87 -GS~iD~aK~ia~~~~~P~iaIPT 109 (351)
T cd08170 87 -GKTLDTAKAVADYLGAPVVIVPT 109 (351)
T ss_pred -chhhHHHHHHHHHcCCCEEEeCC
Confidence 999999998753 4789999875
No 75
>PRK03202 6-phosphofructokinase; Provisional
Probab=81.32 E-value=1.5 Score=45.99 Aligned_cols=53 Identities=26% Similarity=0.448 Sum_probs=39.9
Q ss_pred CCccEEEEEcCchhHHHHHHHcCCCCCcEEEEeC-------C---CccccccCCcccHHHHHHHHH
Q psy5950 241 DKIDFIICLGGDGTLLYASLLFQQSVPPVMAFHL-------G---SLGFLTPFEFENFEDQVTNVL 296 (511)
Q Consensus 241 ~~~DlVIvLGGDGTlL~Aar~~~~~~~PILGINl-------G---~LGFLt~~~~~~~~~~L~~il 296 (511)
.++|.+|++|||||+-.|.++. ..++||+||-. | ++||-|..+ .+.+++.++.
T Consensus 92 ~~Id~Li~IGGd~s~~~a~~L~-e~~i~vigiPkTIDNDl~gtd~s~Gf~TA~~--~~~~~i~~l~ 154 (320)
T PRK03202 92 LGIDALVVIGGDGSYMGAKRLT-EHGIPVIGLPGTIDNDIAGTDYTIGFDTALN--TAVEAIDRLR 154 (320)
T ss_pred cCCCEEEEeCChHHHHHHHHHH-hcCCcEEEecccccCCCCCCccCcCHHHHHH--HHHHHHHHHH
Confidence 4789999999999999888776 45899999843 3 788888755 3445555553
No 76
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=81.16 E-value=4.8 Score=41.85 Aligned_cols=86 Identities=23% Similarity=0.316 Sum_probs=48.5
Q ss_pred CcEEEEEecCCChhhHH--HHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEE
Q psy5950 171 PLTVLVIKKVRDVSVLQ--PFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIIC 248 (511)
Q Consensus 171 p~~VlII~K~~~~~~~~--~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIv 248 (511)
.++++||.- +.+.+ ...++.+.|.+. +.+.+...+..++ ....+.+-+..+. ..++|+||.
T Consensus 22 ~~~~lvv~~---~~~~~~g~~~~v~~~l~~~--~~~~~~~~v~~~p------~~~~v~~~~~~~~------~~~~d~Iia 84 (332)
T cd08180 22 NKRVLIVTD---PFMVKSGMLDKVTDHLDSS--IEVEIFSDVVPDP------PIEVVAKGIKKFL------DFKPDIVIA 84 (332)
T ss_pred CCeEEEEeC---chhhhCccHHHHHHHHHhc--CcEEEeCCCCCCc------CHHHHHHHHHHHH------hcCCCEEEE
Confidence 368999983 33433 567788888753 3333332222221 1221211111110 246899999
Q ss_pred EcCchhHHHHHHHc----C----CCCCcEEEEeC
Q psy5950 249 LGGDGTLLYASLLF----Q----QSVPPVMAFHL 274 (511)
Q Consensus 249 LGGDGTlL~Aar~~----~----~~~~PILGINl 274 (511)
+|| |..+-+++.+ . ...+|++.|..
T Consensus 85 iGG-Gs~~D~aKa~a~~~~~~~~~~~~p~i~VPT 117 (332)
T cd08180 85 LGG-GSAIDAAKAIIYFAKKLGKKKKPLFIAIPT 117 (332)
T ss_pred ECC-chHHHHHHHHHHHHhCCCCCCCCCEEEeCC
Confidence 999 8999999843 1 12468888875
No 77
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=80.77 E-value=3.5 Score=43.78 Aligned_cols=75 Identities=20% Similarity=0.305 Sum_probs=43.3
Q ss_pred CcEEEEEecCCChhhHH--HHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEE
Q psy5950 171 PLTVLVIKKVRDVSVLQ--PFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIIC 248 (511)
Q Consensus 171 p~~VlII~K~~~~~~~~--~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIv 248 (511)
.++++||+-. .+.+ .+.++.+.|++. ++.+.+-..+..++ ....+.+-...+ ...++|+||.
T Consensus 29 ~~r~lvvt~~---~~~~~g~~~~v~~~L~~~-~i~~~~~~~v~~~p------~~~~v~~~~~~~------~~~~~D~Iia 92 (379)
T TIGR02638 29 FKKALVVTDK---DLIKFGVADKVTDLLDEA-GIAYELFDEVKPNP------TITVVKAGVAAF------KASGADYLIA 92 (379)
T ss_pred CCEEEEEcCc---chhhccchHHHHHHHHHC-CCeEEEECCCCCCc------CHHHHHHHHHHH------HhcCCCEEEE
Confidence 3689999843 2333 567888888754 55544433332222 122221111111 0246899999
Q ss_pred EcCchhHHHHHHHc
Q psy5950 249 LGGDGTLLYASLLF 262 (511)
Q Consensus 249 LGGDGTlL~Aar~~ 262 (511)
+|| |.++-+++.+
T Consensus 93 iGG-GSviD~aKai 105 (379)
T TIGR02638 93 IGG-GSPIDTAKAI 105 (379)
T ss_pred eCC-hHHHHHHHHH
Confidence 999 9999999753
No 78
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=80.74 E-value=4.6 Score=42.78 Aligned_cols=72 Identities=24% Similarity=0.293 Sum_probs=42.7
Q ss_pred cEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEEcC
Q psy5950 172 LTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICLGG 251 (511)
Q Consensus 172 ~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvLGG 251 (511)
++++||+-. .+. .+.++.+.|++. ++.+.+.. ...++ ....+.+.+..+. ..++|+||.+||
T Consensus 23 ~r~livtd~---~~~-~~~~v~~~L~~~-g~~~~~~~-~~~~p------~~~~v~~~~~~~~------~~~~D~IIaiGG 84 (374)
T cd08183 23 RRVLLVTGA---SSL-RAAWLIEALRAA-GIEVTHVV-VAGEP------SVELVDAAVAEAR------NAGCDVVIAIGG 84 (374)
T ss_pred CcEEEEECC---chH-HHHHHHHHHHHc-CCeEEEec-CCCCc------CHHHHHHHHHHHH------hcCCCEEEEecC
Confidence 689999843 233 678888889764 45544332 22222 1112221111111 247899999999
Q ss_pred chhHHHHHHHc
Q psy5950 252 DGTLLYASLLF 262 (511)
Q Consensus 252 DGTlL~Aar~~ 262 (511)
|+.+-+++.+
T Consensus 85 -GS~~D~aK~i 94 (374)
T cd08183 85 -GSVIDAGKAI 94 (374)
T ss_pred -chHHHHHHHH
Confidence 9999998864
No 79
>CHL00101 trpG anthranilate synthase component 2
Probab=80.29 E-value=6 Score=37.93 Aligned_cols=35 Identities=23% Similarity=0.260 Sum_probs=25.5
Q ss_pred CccEEEEEcCchhHHH-----HHHHcCCCCCcEEEEeCCC
Q psy5950 242 KIDFIICLGGDGTLLY-----ASLLFQQSVPPVMAFHLGS 276 (511)
Q Consensus 242 ~~DlVIvLGGDGTlL~-----Aar~~~~~~~PILGINlG~ 276 (511)
.+|.||+.||.|..-. .........+|||||-+|.
T Consensus 43 ~~dgiiisgGpg~~~~~~~~~~i~~~~~~~~PiLGIClG~ 82 (190)
T CHL00101 43 NIRHIIISPGPGHPRDSGISLDVISSYAPYIPILGVCLGH 82 (190)
T ss_pred CCCEEEECCCCCChHHCcchHHHHHHhcCCCcEEEEchhH
Confidence 5799999999998633 1222234579999999984
No 80
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=79.73 E-value=1.4 Score=46.44 Aligned_cols=55 Identities=25% Similarity=0.473 Sum_probs=40.5
Q ss_pred CCccEEEEEcCchhHHHHHHHcCC-----CCCcEEEEeC-------C---CccccccCCcccHHHHHHHHHc
Q psy5950 241 DKIDFIICLGGDGTLLYASLLFQQ-----SVPPVMAFHL-------G---SLGFLTPFEFENFEDQVTNVLE 297 (511)
Q Consensus 241 ~~~DlVIvLGGDGTlL~Aar~~~~-----~~~PILGINl-------G---~LGFLt~~~~~~~~~~L~~il~ 297 (511)
.++|.+|++|||||+-.|..+... .++||+||-. | ++||-|..+ .+.+++.++..
T Consensus 91 ~~I~~Lv~IGGd~s~~~a~~L~e~~~~~~~~i~vigiPkTIDNDl~~td~s~Gf~TA~~--~~~~~i~~l~~ 160 (338)
T cd00363 91 HGIDALVVIGGDGSYTGADLLTEEWPSKYQGFNVIGLPGTIDNDIKGTDYTIGFDTALK--TIVEAIDRIRD 160 (338)
T ss_pred hCCCEEEEeCCHHHHHHHHHHHHHHHhcCCCccEEEeeecccCCCcCcccCcCHHHHHH--HHHHHHHHHHH
Confidence 478999999999999888776542 3799999853 2 678877654 45566666654
No 81
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=79.46 E-value=5.7 Score=37.95 Aligned_cols=34 Identities=21% Similarity=0.248 Sum_probs=25.8
Q ss_pred CccEEEEEcCchhH------HHHHHHcCCCCCcEEEEeCCC
Q psy5950 242 KIDFIICLGGDGTL------LYASLLFQQSVPPVMAFHLGS 276 (511)
Q Consensus 242 ~~DlVIvLGGDGTl------L~Aar~~~~~~~PILGINlG~ 276 (511)
++|.||+.||.|.. +...+.+ ...+|||||-+|.
T Consensus 43 ~~~~iilsgGP~~~~~~~~~~~~i~~~-~~~~PiLGIC~G~ 82 (191)
T PRK06774 43 APSHLVISPGPCTPNEAGISLAVIRHF-ADKLPILGVCLGH 82 (191)
T ss_pred CCCeEEEcCCCCChHhCCCchHHHHHh-cCCCCEEEECHHH
Confidence 57999999999984 3334444 3479999999884
No 82
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=79.11 E-value=6.5 Score=38.69 Aligned_cols=36 Identities=19% Similarity=0.215 Sum_probs=27.1
Q ss_pred CCccEEEEEcCchhHH------HHHHHcCCCCCcEEEEeCCC
Q psy5950 241 DKIDFIICLGGDGTLL------YASLLFQQSVPPVMAFHLGS 276 (511)
Q Consensus 241 ~~~DlVIvLGGDGTlL------~Aar~~~~~~~PILGINlG~ 276 (511)
.++|.+|+.||.|..- ...+.+....+|||||-+|.
T Consensus 45 ~~~dgliisGGp~~~~~~~~~~~~i~~~~~~~~PiLGIC~G~ 86 (214)
T PRK07765 45 AQFDGVLLSPGPGTPERAGASIDMVRACAAAGTPLLGVCLGH 86 (214)
T ss_pred cCCCEEEECCCCCChhhcchHHHHHHHHHhCCCCEEEEccCH
Confidence 4689999999997653 33444445689999999995
No 83
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=79.05 E-value=6.8 Score=41.28 Aligned_cols=32 Identities=19% Similarity=0.181 Sum_probs=26.8
Q ss_pred CccEEEEEcCchhHHHHHHHcC---CCCCcEEEEeC
Q psy5950 242 KIDFIICLGGDGTLLYASLLFQ---QSVPPVMAFHL 274 (511)
Q Consensus 242 ~~DlVIvLGGDGTlL~Aar~~~---~~~~PILGINl 274 (511)
+.|+||.+|| |+++-+++.+. ..++|++.|.+
T Consensus 92 r~d~IIavGG-Gsv~D~aK~iA~~~~~gip~i~IPT 126 (358)
T PRK00002 92 RSDTLIALGG-GVIGDLAGFAAATYMRGIRFIQVPT 126 (358)
T ss_pred CCCEEEEEcC-cHHHHHHHHHHHHhcCCCCEEEcCc
Confidence 5699999999 99999998764 45788888876
No 84
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=78.85 E-value=6.7 Score=40.90 Aligned_cols=84 Identities=18% Similarity=0.159 Sum_probs=49.3
Q ss_pred cEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEEcC
Q psy5950 172 LTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICLGG 251 (511)
Q Consensus 172 ~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvLGG 251 (511)
++++||.-..- ......++.+.|.+.+...+++..+ + ....+.+-...+ . ..++|+||.+||
T Consensus 26 ~~~liv~d~~~--~~~~~~~v~~~l~~~~~~~~~~~~~----~------~~~~v~~~~~~~----~--~~~~d~iIaiGG 87 (339)
T cd08173 26 GRVLVVTGPTT--KSIAGKKVEALLEDEGEVDVVIVED----A------TYEEVEKVESSA----R--DIGADFVIGVGG 87 (339)
T ss_pred CeEEEEECCch--HHHHHHHHHHHHHhcCCeEEEEeCC----C------CHHHHHHHHHHh----h--hcCCCEEEEeCC
Confidence 68899984321 1235567888887544233333221 1 111111111111 0 136899999999
Q ss_pred chhHHHHHHHcCC-CCCcEEEEeC
Q psy5950 252 DGTLLYASLLFQQ-SVPPVMAFHL 274 (511)
Q Consensus 252 DGTlL~Aar~~~~-~~~PILGINl 274 (511)
|+++-+++.+.. ..+|++.|.+
T Consensus 88 -Gs~~D~aK~~a~~~~~p~i~iPT 110 (339)
T cd08173 88 -GRVIDVAKVAAYKLGIPFISVPT 110 (339)
T ss_pred -chHHHHHHHHHHhcCCCEEEecC
Confidence 999999997753 4789998875
No 85
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=78.78 E-value=5 Score=41.86 Aligned_cols=86 Identities=13% Similarity=0.198 Sum_probs=49.4
Q ss_pred cEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEE-cCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEEc
Q psy5950 172 LTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYV-EQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICLG 250 (511)
Q Consensus 172 ~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~v-e~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvLG 250 (511)
++++||+-..-. .....++.+.|.+. ++++.+ ...... ++....+.+-... +.+++|+||.+|
T Consensus 25 ~kvlivtd~~~~--~~~~~~i~~~L~~~-~~~~~i~~~~~~~------~p~~~~v~~~~~~-------~~~~~d~IIaiG 88 (332)
T cd08549 25 SKIMIVCGNNTY--KVAGKEIIERLESN-NFTKEVLERDSLL------IPDEYELGEVLIK-------LDKDTEFLLGIG 88 (332)
T ss_pred CcEEEEECCcHH--HHHHHHHHHHHHHc-CCeEEEEecCCCC------CCCHHHHHHHHHH-------hhcCCCEEEEEC
Confidence 689999843222 22347788888754 333322 211111 1112212111111 112789999999
Q ss_pred CchhHHHHHHHcCC-CCCcEEEEeC
Q psy5950 251 GDGTLLYASLLFQQ-SVPPVMAFHL 274 (511)
Q Consensus 251 GDGTlL~Aar~~~~-~~~PILGINl 274 (511)
| |+++-+++.+.. ..+|++.|.+
T Consensus 89 G-Gsv~D~aK~iA~~~gip~I~VPT 112 (332)
T cd08549 89 S-GTIIDLVKFVSFKVGKPFISVPT 112 (332)
T ss_pred C-cHHHHHHHHHHHHcCCCEEEeCC
Confidence 9 999999987653 4789998875
No 86
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=78.17 E-value=4.1 Score=42.93 Aligned_cols=77 Identities=18% Similarity=0.247 Sum_probs=43.7
Q ss_pred CcEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEEc
Q psy5950 171 PLTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICLG 250 (511)
Q Consensus 171 p~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvLG 250 (511)
.++++||.-..- .-...+.++.+.|.+. ++.+.+-..+... +....+.+.+..+. ..++|+||.+|
T Consensus 24 ~~~~liv~~~~~-~~~~~~~~v~~~L~~~-g~~~~~~~~v~~~------p~~~~v~~~~~~~~------~~~~d~IIaiG 89 (370)
T cd08192 24 IKRPLIVTDPGL-AALGLVARVLALLEDA-GLAAALFDEVPPN------PTEAAVEAGLAAYR------AGGCDGVIAFG 89 (370)
T ss_pred CCeEEEEcCcch-hhCccHHHHHHHHHHc-CCeEEEeCCCCCC------CCHHHHHHHHHHHH------hcCCCEEEEeC
Confidence 368999984322 1223567888888754 4554433222221 12222222111111 24789999999
Q ss_pred CchhHHHHHHHc
Q psy5950 251 GDGTLLYASLLF 262 (511)
Q Consensus 251 GDGTlL~Aar~~ 262 (511)
| |+++-+++.+
T Consensus 90 G-GSviD~aK~i 100 (370)
T cd08192 90 G-GSALDLAKAV 100 (370)
T ss_pred C-chHHHHHHHH
Confidence 9 9999998865
No 87
>KOG1116|consensus
Probab=77.93 E-value=3.5 Score=46.53 Aligned_cols=75 Identities=23% Similarity=0.235 Sum_probs=47.8
Q ss_pred CCCCcEEEEEecCC--ChhhHHHHHHHHHHHHhcCCe--EEEEcCCccccccccCCCCccccccccccccCCCCCCCCCc
Q psy5950 168 YKPPLTVLVIKKVR--DVSVLQPFVKLVKWLIQEKSM--LVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKI 243 (511)
Q Consensus 168 ~~~p~~VlII~K~~--~~~~~~~~~el~~~L~~~~~~--~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~ 243 (511)
.+.+++++|+..|+ +-.+.+.++..++-|....++ +|.+-+.-... ..+. .+....++
T Consensus 176 ~~r~~~lLV~iNP~gGkGka~~~F~~~v~Pll~~A~i~~evv~T~~~~HA-------------rei~-----rt~dl~ky 237 (579)
T KOG1116|consen 176 LKRPRRLLVFINPFGGKGKAKKLFKNHVEPLLSEAGISFEVVLTTRPNHA-------------REIV-----RTLDLGKY 237 (579)
T ss_pred cCCCccEEEEECCCCCCccHHHHHHhhhhhhhhhcCceEEEEEecCccHH-------------HHHH-----Hhhhcccc
Confidence 35688999999875 557788888777777655443 33332221110 0111 11134678
Q ss_pred cEEEEEcCchhHHHHHH
Q psy5950 244 DFIICLGGDGTLLYASL 260 (511)
Q Consensus 244 DlVIvLGGDGTlL~Aar 260 (511)
|-|||+||||++-.+..
T Consensus 238 DgIv~vsGDGl~hEVlN 254 (579)
T KOG1116|consen 238 DGIVCVSGDGLLHEVLN 254 (579)
T ss_pred ceEEEecCCcCHHHhhh
Confidence 99999999999988776
No 88
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=77.92 E-value=5.7 Score=41.54 Aligned_cols=33 Identities=27% Similarity=0.411 Sum_probs=27.6
Q ss_pred CCccEEEEEcCchhHHHHHHHcCC-CCCcEEEEeC
Q psy5950 241 DKIDFIICLGGDGTLLYASLLFQQ-SVPPVMAFHL 274 (511)
Q Consensus 241 ~~~DlVIvLGGDGTlL~Aar~~~~-~~~PILGINl 274 (511)
.++|+||.+|| |+++-+++.+.. ..+|++.|.+
T Consensus 75 ~~~D~iIavGG-Gs~~D~aK~ia~~~~~p~i~VPT 108 (347)
T cd08172 75 NGADVIIGIGG-GKVLDTAKAVADRLGVPVITVPT 108 (347)
T ss_pred cCCCEEEEeCC-cHHHHHHHHHHHHhCCCEEEecC
Confidence 46899999999 999999998753 4679988875
No 89
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=77.78 E-value=3.2 Score=42.18 Aligned_cols=96 Identities=23% Similarity=0.261 Sum_probs=50.7
Q ss_pred CCcEEEEEecCCChhhHHHH-HHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCC-CCCccEEE
Q psy5950 170 PPLTVLVIKKVRDVSVLQPF-VKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDL-TDKIDFII 247 (511)
Q Consensus 170 ~p~~VlII~K~~~~~~~~~~-~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~-~~~~DlVI 247 (511)
..++++||.- +...+.+ +++.+.|+. .++.+.+-......+. ...+.+ + .+.+ ..++|+||
T Consensus 18 ~~~~~lvv~d---~~t~~~~g~~v~~~l~~-~g~~v~~~~~~~~~~~------~~~~~~-~------~~~~~~~~~d~ii 80 (250)
T PF13685_consen 18 GLKKVLVVTD---ENTYKAAGEKVEESLKS-AGIEVAVIEEFVGDAD------EDEVEK-L------VEALRPKDADLII 80 (250)
T ss_dssp T-SEEEEEEE---TTHHHHHHHHHHHHHHT-TT-EEEEEE-EE---B------HHHHHH-H------HTTS--TT--EEE
T ss_pred CCCcEEEEEc---CCHHHHHHHHHHHHHHH-cCCeEEEEecCCCCCC------HHHHHH-H------HHHhcccCCCEEE
Confidence 3479999994 4445544 466666764 4555542110000000 000100 0 1122 35789999
Q ss_pred EEcCchhHHHHHHHcCC-CCCcEEEEeC--CCccccccC
Q psy5950 248 CLGGDGTLLYASLLFQQ-SVPPVMAFHL--GSLGFLTPF 283 (511)
Q Consensus 248 vLGGDGTlL~Aar~~~~-~~~PILGINl--G~LGFLt~~ 283 (511)
.+|| ||+.-.++.... .++|.+.|-+ -+=||-+++
T Consensus 81 ~vGg-G~i~D~~K~~A~~~~~p~isVPTa~S~DG~aS~~ 118 (250)
T PF13685_consen 81 GVGG-GTIIDIAKYAAFELGIPFISVPTAASHDGFASPV 118 (250)
T ss_dssp EEES-HHHHHHHHHHHHHHT--EEEEES--SSGGGTSSE
T ss_pred EeCC-cHHHHHHHHHHHhcCCCEEEeccccccccccCCC
Confidence 9999 999999998764 6889998865 344666554
No 90
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=77.33 E-value=12 Score=39.82 Aligned_cols=93 Identities=13% Similarity=0.137 Sum_probs=51.3
Q ss_pred CCCcEEEEEecCCChhhHH-HHHHHHHHHHhcCCeEE--EEcCCccccccccCCCCccccccccccccCCCCCCCCCccE
Q psy5950 169 KPPLTVLVIKKVRDVSVLQ-PFVKLVKWLIQEKSMLV--YVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDF 245 (511)
Q Consensus 169 ~~p~~VlII~K~~~~~~~~-~~~el~~~L~~~~~~~V--~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~Dl 245 (511)
+.+++++||.- +.+.. ...++.+.|.+. ++.+ ++-+..-. ++.+..+.+-...+. ......++|+
T Consensus 24 ~~~~~~lvVtd---~~v~~~~~~~v~~~l~~~-g~~~~~~v~~~~e~------~~s~~~v~~~~~~l~--~~~~~r~~d~ 91 (354)
T cd08199 24 EGSGRRFVVVD---QNVDKLYGKKLREYFAHH-NIPLTILVLRAGEA------AKTMDTVLKIVDALD--AFGISRRREP 91 (354)
T ss_pred cCCCeEEEEEC---ccHHHHHHHHHHHHHHhc-CCceEEEEeCCCCC------CCCHHHHHHHHHHHH--HcCCCCCCCE
Confidence 35788999983 33333 446788888754 3332 22121111 111111111111110 1122345599
Q ss_pred EEEEcCchhHHHHHHHcC---CCCCcEEEEeC
Q psy5950 246 IICLGGDGTLLYASLLFQ---QSVPPVMAFHL 274 (511)
Q Consensus 246 VIvLGGDGTlL~Aar~~~---~~~~PILGINl 274 (511)
||.+|| |+++.+++.+. ..++|++-|.+
T Consensus 92 IVaiGG-G~v~D~ak~~A~~~~rg~p~i~VPT 122 (354)
T cd08199 92 VLAIGG-GVLTDVAGLAASLYRRGTPYVRIPT 122 (354)
T ss_pred EEEECC-cHHHHHHHHHHHHhcCCCCEEEEcC
Confidence 999999 99999998775 45788877765
No 91
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=77.10 E-value=8.7 Score=40.09 Aligned_cols=33 Identities=21% Similarity=0.207 Sum_probs=26.6
Q ss_pred CCccEEEEEcCchhHHHHHHHcC---CCCCcEEEEeC
Q psy5950 241 DKIDFIICLGGDGTLLYASLLFQ---QSVPPVMAFHL 274 (511)
Q Consensus 241 ~~~DlVIvLGGDGTlL~Aar~~~---~~~~PILGINl 274 (511)
.+.|+||.+|| |+++-+++.+. ...+|++.|.+
T Consensus 80 ~r~d~IIavGG-Gsv~D~aK~iA~~~~~~~p~i~VPT 115 (344)
T TIGR01357 80 DRSSTIIALGG-GVVGDLAGFVAATYMRGIRFIQVPT 115 (344)
T ss_pred CCCCEEEEEcC-hHHHHHHHHHHHHHccCCCEEEecC
Confidence 35699999999 99999988764 45778888776
No 92
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=76.85 E-value=3.8 Score=42.75 Aligned_cols=33 Identities=21% Similarity=0.341 Sum_probs=27.6
Q ss_pred CCccEEEEEcCchhHHHHHHHcCC-CCCcEEEEeC
Q psy5950 241 DKIDFIICLGGDGTLLYASLLFQQ-SVPPVMAFHL 274 (511)
Q Consensus 241 ~~~DlVIvLGGDGTlL~Aar~~~~-~~~PILGINl 274 (511)
.++|+||.+|| |+++-+++.+.. ..+|++.|-.
T Consensus 76 ~~~d~IIaiGG-Gs~iD~aK~ia~~~~~p~i~IPT 109 (337)
T cd08177 76 AGADGIVAIGG-GSTIDLAKAIALRTGLPIIAIPT 109 (337)
T ss_pred cCCCEEEEeCC-cHHHHHHHHHHHHhcCCEEEEcC
Confidence 47899999999 999999997653 4789988875
No 93
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=76.36 E-value=9.3 Score=40.28 Aligned_cols=91 Identities=12% Similarity=0.024 Sum_probs=50.0
Q ss_pred CcEEEEEecCCChhhH-HHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEE
Q psy5950 171 PLTVLVIKKVRDVSVL-QPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICL 249 (511)
Q Consensus 171 p~~VlII~K~~~~~~~-~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvL 249 (511)
.++++||.- +.+. ....++.+.|++..++.+++-...... +.+..+.+-+..+. +.-..+.|+||.+
T Consensus 23 ~~k~livtd---~~v~~~~~~~v~~~L~~~~~~~~~~~~~~e~~------k~~~~v~~~~~~~~---~~~~~r~d~IIai 90 (344)
T cd08169 23 FDQYFFISD---SGVADLIAHYIAEYLSKILPVHILVIEGGEEY------KTFETVTRILERAI---ALGANRRTAIVAV 90 (344)
T ss_pred CCeEEEEEC---ccHHHHHHHHHHHHHHhhcCceEEEeCCCCCC------CCHHHHHHHHHHHH---HcCCCCCcEEEEE
Confidence 468999984 3233 355678888864134444432222211 11111111110110 1112458999999
Q ss_pred cCchhHHHHHHHcC---CCCCcEEEEeC
Q psy5950 250 GGDGTLLYASLLFQ---QSVPPVMAFHL 274 (511)
Q Consensus 250 GGDGTlL~Aar~~~---~~~~PILGINl 274 (511)
|| |+++-++..+. ...+|++.|.+
T Consensus 91 GG-Gsv~D~ak~vA~~~~rgip~i~VPT 117 (344)
T cd08169 91 GG-GATGDVAGFVASTLFRGIAFIRVPT 117 (344)
T ss_pred CC-cHHHHHHHHHHHHhccCCcEEEecC
Confidence 99 99998888754 34788888876
No 94
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase. Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyzes the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes. TIGR02482 represents the ATP-dependent 6-phosphofructokinase enzyme contained within Pfam pfam00365: Phosphofructokinase. This model hits primarily bacterial, plant alpha, and plant beta sequences.
Probab=76.34 E-value=2.5 Score=47.49 Aligned_cols=53 Identities=26% Similarity=0.392 Sum_probs=37.4
Q ss_pred CCccEEEEEcCchhHHHHHHHcC-----CCCCcEEEEeC-------C-----CccccccCCcccHHHHHHHH
Q psy5950 241 DKIDFIICLGGDGTLLYASLLFQ-----QSVPPVMAFHL-------G-----SLGFLTPFEFENFEDQVTNV 295 (511)
Q Consensus 241 ~~~DlVIvLGGDGTlL~Aar~~~-----~~~~PILGINl-------G-----~LGFLt~~~~~~~~~~L~~i 295 (511)
-++|.+|++|||||+-.|+.+.. +..++|+||-- | ++||-|..+ -+-+.|.++
T Consensus 160 ~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGIPkTIDNDl~~~~td~s~GFdTA~~--~~~~~I~~i 229 (539)
T TIGR02477 160 LKLDGLVIIGGDDSNTNAALLAEYFAKHGLKTQVIGVPKTIDGDLKNQFIETSFGFDTACK--IYSELIGNI 229 (539)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEeeeecCCCCCCCCCCCcCHHHHHH--HHHHHHHHH
Confidence 46899999999999998887664 35699999843 2 667766544 233444444
No 95
>PRK06490 glutamine amidotransferase; Provisional
Probab=75.99 E-value=11 Score=37.89 Aligned_cols=36 Identities=14% Similarity=0.170 Sum_probs=25.5
Q ss_pred CCccEEEEEcCchhH------H----HHHHHcCCCCCcEEEEeCCC
Q psy5950 241 DKIDFIICLGGDGTL------L----YASLLFQQSVPPVMAFHLGS 276 (511)
Q Consensus 241 ~~~DlVIvLGGDGTl------L----~Aar~~~~~~~PILGINlG~ 276 (511)
+++|.+|+.||=++. + ...+.+....+|||||-+|+
T Consensus 51 ~~~dgvii~Ggp~~~~d~~~wi~~~~~~i~~~~~~~~PvLGIC~G~ 96 (239)
T PRK06490 51 EDHAGAVIFGGPMSANDPDDFIRREIDWISVPLKENKPFLGICLGA 96 (239)
T ss_pred cccCEEEEECCCCCCCCCchHHHHHHHHHHHHHHCCCCEEEECHhH
Confidence 458999999998753 2 22233334579999999985
No 96
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=75.61 E-value=10 Score=36.32 Aligned_cols=34 Identities=21% Similarity=0.207 Sum_probs=25.1
Q ss_pred CccEEEEEcCchhHH------HHHHHcCCCCCcEEEEeCCC
Q psy5950 242 KIDFIICLGGDGTLL------YASLLFQQSVPPVMAFHLGS 276 (511)
Q Consensus 242 ~~DlVIvLGGDGTlL------~Aar~~~~~~~PILGINlG~ 276 (511)
++|.+|+.||.|..- ...+.+ ...+|||||-+|.
T Consensus 43 ~~~~iilsgGp~~~~~~~~~~~~i~~~-~~~~PiLGIClG~ 82 (193)
T PRK08857 43 NPTHLVISPGPCTPNEAGISLQAIEHF-AGKLPILGVCLGH 82 (193)
T ss_pred CCCEEEEeCCCCChHHCcchHHHHHHh-cCCCCEEEEcHHH
Confidence 468999999998753 333343 3579999999884
No 97
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=75.58 E-value=9.1 Score=40.07 Aligned_cols=92 Identities=15% Similarity=0.097 Sum_probs=49.6
Q ss_pred CcEEEEEecCCChhhHHHHHHHHHHHHhcC-CeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEE
Q psy5950 171 PLTVLVIKKVRDVSVLQPFVKLVKWLIQEK-SMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICL 249 (511)
Q Consensus 171 p~~VlII~K~~~~~~~~~~~el~~~L~~~~-~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvL 249 (511)
.++++||+-.+-.+ ....++.+.|.+.+ ...+++-..... ++.+..+.+-+..+. +.-..+.|+||.+
T Consensus 24 ~~~~livtd~~~~~--~~~~~l~~~L~~~g~~~~~~~~~~~e~------~~~~~~v~~~~~~~~---~~~~~r~d~IIai 92 (345)
T cd08195 24 GSKILIVTDENVAP--LYLEKLKAALEAAGFEVEVIVIPAGEA------SKSLETLEKLYDALL---EAGLDRKSLIIAL 92 (345)
T ss_pred CCeEEEEECCchHH--HHHHHHHHHHHhcCCceEEEEeCCCCC------cCCHHHHHHHHHHHH---HcCCCCCCeEEEE
Confidence 47899998432222 35677888887543 233332111111 111222211111110 1112345999999
Q ss_pred cCchhHHHHHHHcC---CCCCcEEEEeC
Q psy5950 250 GGDGTLLYASLLFQ---QSVPPVMAFHL 274 (511)
Q Consensus 250 GGDGTlL~Aar~~~---~~~~PILGINl 274 (511)
|| |+++-++..+. ..++|++.|.+
T Consensus 93 GG-Gsv~D~ak~vA~~~~rgip~i~VPT 119 (345)
T cd08195 93 GG-GVVGDLAGFVAATYMRGIDFIQIPT 119 (345)
T ss_pred CC-hHHHhHHHHHHHHHhcCCCeEEcch
Confidence 99 99999998764 45778877765
No 98
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=75.51 E-value=8.6 Score=40.57 Aligned_cols=86 Identities=17% Similarity=0.098 Sum_probs=49.8
Q ss_pred cEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEEcC
Q psy5950 172 LTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICLGG 251 (511)
Q Consensus 172 ~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvLGG 251 (511)
++++||+-.. .......++.+.|.+. ++.+.+.. +..++ ....+.+-...+ ...++|+||.+||
T Consensus 30 ~~~livtd~~--~~~~~~~~v~~~l~~~-~~~~~~~~-~~~ep------~~~~v~~~~~~~------~~~~~d~IIavGG 93 (366)
T PRK09423 30 KRALVIADEF--VLGIVGDRVEASLKEA-GLTVVFEV-FNGEC------SDNEIDRLVAIA------EENGCDVVIGIGG 93 (366)
T ss_pred CEEEEEEChh--HHHHHHHHHHHHHHhC-CCeEEEEE-eCCCC------CHHHHHHHHHHH------HhcCCCEEEEecC
Confidence 7899998322 1223567788888754 44432221 11111 111111111111 0236899999999
Q ss_pred chhHHHHHHHcCC-CCCcEEEEeC
Q psy5950 252 DGTLLYASLLFQQ-SVPPVMAFHL 274 (511)
Q Consensus 252 DGTlL~Aar~~~~-~~~PILGINl 274 (511)
|+++-+++.+.. ..+|++.|-.
T Consensus 94 -Gsv~D~aK~iA~~~~~p~i~IPT 116 (366)
T PRK09423 94 -GKTLDTAKAVADYLGVPVVIVPT 116 (366)
T ss_pred -hHHHHHHHHHHHHcCCCEEEeCC
Confidence 999999997753 4789998875
No 99
>PLN02251 pyrophosphate-dependent phosphofructokinase
Probab=75.20 E-value=2.7 Score=47.52 Aligned_cols=54 Identities=26% Similarity=0.392 Sum_probs=37.9
Q ss_pred CCccEEEEEcCchhHHHHHHHcC-----CCCCcEEEEeC-------C-----CccccccCCcccHHHHHHHHH
Q psy5950 241 DKIDFIICLGGDGTLLYASLLFQ-----QSVPPVMAFHL-------G-----SLGFLTPFEFENFEDQVTNVL 296 (511)
Q Consensus 241 ~~~DlVIvLGGDGTlL~Aar~~~-----~~~~PILGINl-------G-----~LGFLt~~~~~~~~~~L~~il 296 (511)
-++|.+|++|||||+-.|+.+.. +..++|+||-- | ++||=|... -+-+.|.++.
T Consensus 189 l~Id~LViIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDL~~td~e~s~GFdTA~k--~~a~~I~ni~ 259 (568)
T PLN02251 189 LDLDGLVVIGGDDSNTNACLLAEYFRAKNLKTRVIGCPKTIDGDLKSKEVPTSFGFDTACK--IYSEMIGNVM 259 (568)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHHHHhcCCCeeEEEeCceEeCCCCCCcCCCCCCHHHHHH--HHHHHHHHHH
Confidence 36899999999999999988654 35689999843 2 567776544 3444455444
No 100
>PRK07567 glutamine amidotransferase; Provisional
Probab=75.12 E-value=7.1 Score=39.16 Aligned_cols=36 Identities=14% Similarity=-0.051 Sum_probs=24.8
Q ss_pred CCccEEEEEcCchhH------------------HHHHHHcCCCCCcEEEEeCCC
Q psy5950 241 DKIDFIICLGGDGTL------------------LYASLLFQQSVPPVMAFHLGS 276 (511)
Q Consensus 241 ~~~DlVIvLGGDGTl------------------L~Aar~~~~~~~PILGINlG~ 276 (511)
+++|.||+.||-+.. ..+.+.+...++|||||-+|.
T Consensus 50 ~~~dgvIi~Gg~~~~~d~~~~~~pw~~~~~~~i~~~i~~~~~~~~PvLGIC~G~ 103 (242)
T PRK07567 50 DDYSGVIVGGSPFNVSDPAESKSPWQRRVEAELSGLLDEVVARDFPFLGACYGV 103 (242)
T ss_pred hhccEEEEcCCCCcCCCCCCccchHHHHHHHHHHHHHHHHHhcCCCEEEEchhH
Confidence 468999999996432 112233335689999999985
No 101
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=75.11 E-value=2.9 Score=47.22 Aligned_cols=53 Identities=25% Similarity=0.414 Sum_probs=37.2
Q ss_pred CCccEEEEEcCchhHHHHHHHcC-----CCCCcEEEEeC-------C-----CccccccCCcccHHHHHHHH
Q psy5950 241 DKIDFIICLGGDGTLLYASLLFQ-----QSVPPVMAFHL-------G-----SLGFLTPFEFENFEDQVTNV 295 (511)
Q Consensus 241 ~~~DlVIvLGGDGTlL~Aar~~~-----~~~~PILGINl-------G-----~LGFLt~~~~~~~~~~L~~i 295 (511)
-++|.+|++|||||+-.|+.+.. ...+||+||-- | ++||=|..+ -+-+.|.++
T Consensus 163 ~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIGIPkTIDNDl~~~~id~s~GFdTA~~--~~~~~I~~i 232 (555)
T PRK07085 163 LKLDGLVIIGGDDSNTNAAILAEYFAKHGCKTQVIGVPKTIDGDLKNEFIETSFGFDTATK--TYSEMIGNI 232 (555)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHHHHHhCCCccEEEEeeeecCCCCCCcccccCCHHHHHH--HHHHHHHHH
Confidence 37899999999999999887654 35899999832 1 567766544 233444444
No 102
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=74.73 E-value=4.7 Score=43.29 Aligned_cols=77 Identities=17% Similarity=0.174 Sum_probs=44.9
Q ss_pred CcEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEEc
Q psy5950 171 PLTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICLG 250 (511)
Q Consensus 171 p~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvLG 250 (511)
.++++|+.... -.....+.++.+.|++. ++.+.+...+..+|. ...+.+-+..+. ..++|+||.+|
T Consensus 49 ~~~~lvv~~~~-~~~~g~~~~v~~~L~~~-gi~~~~~~~v~~~P~------~~~v~~~~~~~r------~~~~D~IiavG 114 (395)
T PRK15454 49 LKHLFVMADSF-LHQAGMTAGLTRSLAVK-GIAMTLWPCPVGEPC------ITDVCAAVAQLR------ESGCDGVIAFG 114 (395)
T ss_pred CCEEEEEcCcc-hhhCccHHHHHHHHHHc-CCeEEEECCCCCCcC------HHHHHHHHHHHH------hcCcCEEEEeC
Confidence 46888887422 11234467888889754 556554443333222 111211111111 25789999999
Q ss_pred CchhHHHHHHHc
Q psy5950 251 GDGTLLYASLLF 262 (511)
Q Consensus 251 GDGTlL~Aar~~ 262 (511)
| |..+-+++.+
T Consensus 115 G-GS~iD~AKai 125 (395)
T PRK15454 115 G-GSVLDAAKAV 125 (395)
T ss_pred C-hHHHHHHHHH
Confidence 9 8999999864
No 103
>PRK10586 putative oxidoreductase; Provisional
Probab=74.55 E-value=10 Score=40.38 Aligned_cols=33 Identities=27% Similarity=0.411 Sum_probs=28.2
Q ss_pred CCccEEEEEcCchhHHHHHHHcCC-CCCcEEEEeC
Q psy5950 241 DKIDFIICLGGDGTLLYASLLFQQ-SVPPVMAFHL 274 (511)
Q Consensus 241 ~~~DlVIvLGGDGTlL~Aar~~~~-~~~PILGINl 274 (511)
.++|+||.+|| |..+.+++.+.. ..+|++.|.+
T Consensus 85 ~~~d~iiavGG-Gs~iD~aK~~a~~~~~p~i~vPT 118 (362)
T PRK10586 85 DDRQVVIGVGG-GALLDTAKALARRLGLPFVAIPT 118 (362)
T ss_pred cCCCEEEEecC-cHHHHHHHHHHhhcCCCEEEEeC
Confidence 46799999999 999999998754 5789999986
No 104
>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=74.43 E-value=3 Score=47.56 Aligned_cols=32 Identities=22% Similarity=0.241 Sum_probs=27.0
Q ss_pred CCccEEEEEcCchhHHHHHHHcC-----CCCCcEEEE
Q psy5950 241 DKIDFIICLGGDGTLLYASLLFQ-----QSVPPVMAF 272 (511)
Q Consensus 241 ~~~DlVIvLGGDGTlL~Aar~~~-----~~~~PILGI 272 (511)
-++|.+|++|||||+-.|+.+.. ...++|+||
T Consensus 172 l~Id~LvvIGGddS~~~A~~Lae~~~~~~~~i~VIGI 208 (610)
T PLN03028 172 LKLDGLVIIGGVTSNTDAAQLAETFAEAKCKTKVVGV 208 (610)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHHHHHcCCCceEEEe
Confidence 36899999999999998887654 347999998
No 105
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=74.01 E-value=11 Score=36.05 Aligned_cols=34 Identities=24% Similarity=0.168 Sum_probs=25.7
Q ss_pred CccEEEEEcCchhHHH------HHHHcCCCCCcEEEEeCCC
Q psy5950 242 KIDFIICLGGDGTLLY------ASLLFQQSVPPVMAFHLGS 276 (511)
Q Consensus 242 ~~DlVIvLGGDGTlL~------Aar~~~~~~~PILGINlG~ 276 (511)
++|.||..||-|..-. ..+.+ ...+|||||-+|.
T Consensus 43 ~~d~iilsgGpg~p~~~~~~~~~i~~~-~~~~PvLGIC~G~ 82 (188)
T TIGR00566 43 LPLLIVISPGPCTPNEAGISLEAIRHF-AGKLPILGVCLGH 82 (188)
T ss_pred CCCEEEEcCCCCChhhcchhHHHHHHh-ccCCCEEEECHHH
Confidence 4789999999988633 34444 4578999999884
No 106
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=73.99 E-value=11 Score=39.48 Aligned_cols=88 Identities=17% Similarity=0.166 Sum_probs=49.5
Q ss_pred cEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEEcC
Q psy5950 172 LTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICLGG 251 (511)
Q Consensus 172 ~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvLGG 251 (511)
++++||+-+.-.+ ....++.+.|.+. ++.+.+....... .++.+..+.+-.. ...+++|+||.+||
T Consensus 24 ~~~livtd~~~~~--~~~~~v~~~l~~~-~i~~~~~~~~~~~----~~pt~~~v~~~~~-------~~~~~~d~IIaIGG 89 (348)
T cd08175 24 KKALIVADENTYA--AAGKKVEALLKRA-GVVVLLIVLPAGD----LIADEKAVGRVLK-------ELERDTDLIIAVGS 89 (348)
T ss_pred CcEEEEECCcHHH--HHHHHHHHHHHHC-CCeeEEeecCCCc----ccCCHHHHHHHHH-------HhhccCCEEEEECC
Confidence 6789998432222 2357888888754 4433221111110 0112222211111 11127899999999
Q ss_pred chhHHHHHHHcCC-CCCcEEEEeC
Q psy5950 252 DGTLLYASLLFQQ-SVPPVMAFHL 274 (511)
Q Consensus 252 DGTlL~Aar~~~~-~~~PILGINl 274 (511)
|.++-+++.+.. ..+|++.|-+
T Consensus 90 -Gs~~D~aK~vA~~~~~p~i~IPT 112 (348)
T cd08175 90 -GTINDITKYVSYKTGIPYISVPT 112 (348)
T ss_pred -cHHHHHHHHHHHhcCCCEEEecC
Confidence 999999998743 4689999875
No 107
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=73.87 E-value=6.7 Score=41.94 Aligned_cols=76 Identities=22% Similarity=0.235 Sum_probs=43.6
Q ss_pred CcEEEEEecCCChhhH--HHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEE
Q psy5950 171 PLTVLVIKKVRDVSVL--QPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIIC 248 (511)
Q Consensus 171 p~~VlII~K~~~~~~~--~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIv 248 (511)
.++++||+- +.+. ..+.++.+.|++. ++.+.+-..+...+ ....+.+-...+ ...++|+||.
T Consensus 21 ~~k~liVtd---~~~~~~g~~~~v~~~L~~~-gi~~~~f~~v~~~p------~~~~v~~~~~~~------~~~~~D~IIa 84 (398)
T cd08178 21 KKRAFIVTD---RFMVKLGYVDKVIDVLKRR-GVETEVFSDVEPDP------SLETVRKGLELM------NSFKPDTIIA 84 (398)
T ss_pred CCeEEEEcC---hhHHhCccHHHHHHHHHHC-CCeEEEecCCCCCc------CHHHHHHHHHHH------HhcCCCEEEE
Confidence 368999983 3333 2566788888754 55554433332222 112121111111 1246899999
Q ss_pred EcCchhHHHHHHHcC
Q psy5950 249 LGGDGTLLYASLLFQ 263 (511)
Q Consensus 249 LGGDGTlL~Aar~~~ 263 (511)
+|| |+.+-+++.+.
T Consensus 85 iGG-GS~iD~AK~iA 98 (398)
T cd08178 85 LGG-GSPMDAAKIMW 98 (398)
T ss_pred eCC-ccHHHHHHHHH
Confidence 999 89998887653
No 108
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=73.83 E-value=10 Score=39.73 Aligned_cols=33 Identities=24% Similarity=0.370 Sum_probs=28.0
Q ss_pred CCccEEEEEcCchhHHHHHHHcCC-CCCcEEEEeC
Q psy5950 241 DKIDFIICLGGDGTLLYASLLFQQ-SVPPVMAFHL 274 (511)
Q Consensus 241 ~~~DlVIvLGGDGTlL~Aar~~~~-~~~PILGINl 274 (511)
.++|+||.+|| |+++-+++.+.. ..+|++.|..
T Consensus 76 ~~~d~IIavGG-Gs~~D~aK~ia~~~~~p~i~VPT 109 (349)
T cd08550 76 QEADVIIGVGG-GKTLDTAKAVADRLDKPIVIVPT 109 (349)
T ss_pred cCCCEEEEecC-cHHHHHHHHHHHHcCCCEEEeCC
Confidence 46899999999 999999998753 4789998876
No 109
>PRK05670 anthranilate synthase component II; Provisional
Probab=73.21 E-value=8.1 Score=36.84 Aligned_cols=34 Identities=26% Similarity=0.298 Sum_probs=24.4
Q ss_pred CccEEEEEcCchhHH------HHHHHcCCCCCcEEEEeCCC
Q psy5950 242 KIDFIICLGGDGTLL------YASLLFQQSVPPVMAFHLGS 276 (511)
Q Consensus 242 ~~DlVIvLGGDGTlL------~Aar~~~~~~~PILGINlG~ 276 (511)
++|.||+.||-|+.- ...+.+ ...+|||||-+|.
T Consensus 43 ~~dglIlsgGpg~~~d~~~~~~~l~~~-~~~~PvLGIClG~ 82 (189)
T PRK05670 43 NPDAIVLSPGPGTPAEAGISLELIREF-AGKVPILGVCLGH 82 (189)
T ss_pred CCCEEEEcCCCCChHHcchHHHHHHHh-cCCCCEEEECHHH
Confidence 379999999998862 222333 2468999999884
No 110
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent phosphofructokinases. These are found in bacteria as well as plants. These may be dimeric nonallosteric enzymes as in bacteria or allosteric heterotetramers as in plants.
Probab=73.01 E-value=3.3 Score=46.64 Aligned_cols=54 Identities=26% Similarity=0.399 Sum_probs=37.7
Q ss_pred CCccEEEEEcCchhHHHHHHHcC-----CCCCcEEEEeC-------C-----CccccccCCcccHHHHHHHHH
Q psy5950 241 DKIDFIICLGGDGTLLYASLLFQ-----QSVPPVMAFHL-------G-----SLGFLTPFEFENFEDQVTNVL 296 (511)
Q Consensus 241 ~~~DlVIvLGGDGTlL~Aar~~~-----~~~~PILGINl-------G-----~LGFLt~~~~~~~~~~L~~il 296 (511)
-++|.+|++|||||+-.|+.+.. +..++|+||-- | ++||=|..+ -+-+.|.++.
T Consensus 165 ~~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~t~id~s~GFdTA~k--~~a~~I~ni~ 235 (550)
T cd00765 165 LDLDALVVIGGDDSNTNAALLAENFRSKGLKTRVIGVPKTIDGDLKNKEIETSFGFDTATK--IYSELIGNVM 235 (550)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEeeeecCCCCCCCCCCCcCHHHHHH--HHHHHHHHHH
Confidence 36899999999999998887654 35589999843 3 567776654 2334444444
No 111
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=72.58 E-value=6.9 Score=41.43 Aligned_cols=77 Identities=21% Similarity=0.254 Sum_probs=43.8
Q ss_pred CcEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEEc
Q psy5950 171 PLTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICLG 250 (511)
Q Consensus 171 p~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvLG 250 (511)
.++++||+-..- .-...+.++.+.|++. ++.+.+...+...+ ....+.+-...+. ..++|+||.+|
T Consensus 26 ~~~~lvvt~~~~-~~~g~~~~v~~~L~~~-g~~~~~~~~v~~~p------~~~~v~~~~~~~~------~~~~d~IIaiG 91 (374)
T cd08189 26 VKKVLIVTDKGL-VKLGLLDKVLEALEGA-GIEYAVYDGVPPDP------TIENVEAGLALYR------ENGCDAILAVG 91 (374)
T ss_pred CCeEEEEeCcch-hhcccHHHHHHHHHhc-CCeEEEeCCCCCCc------CHHHHHHHHHHHH------hcCCCEEEEeC
Confidence 368999984321 1122567888888754 45554443333222 2222221111111 24689999999
Q ss_pred CchhHHHHHHHc
Q psy5950 251 GDGTLLYASLLF 262 (511)
Q Consensus 251 GDGTlL~Aar~~ 262 (511)
| |+.+-+++.+
T Consensus 92 G-GS~~D~aK~i 102 (374)
T cd08189 92 G-GSVIDCAKAI 102 (374)
T ss_pred C-ccHHHHHHHH
Confidence 9 8999999864
No 112
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=72.55 E-value=14 Score=38.88 Aligned_cols=32 Identities=22% Similarity=0.369 Sum_probs=26.4
Q ss_pred CccEEEEEcCchhHHHHHHHcCC-CCCcEEEEeC
Q psy5950 242 KIDFIICLGGDGTLLYASLLFQQ-SVPPVMAFHL 274 (511)
Q Consensus 242 ~~DlVIvLGGDGTlL~Aar~~~~-~~~PILGINl 274 (511)
++|+||.+|| |+++-+++.+.. ..+|++-|.+
T Consensus 87 ~~d~IIaiGG-Gsv~D~ak~vA~~rgip~I~IPT 119 (350)
T PRK00843 87 NAGFLIGVGG-GKVIDVAKLAAYRLGIPFISVPT 119 (350)
T ss_pred CCCEEEEeCC-chHHHHHHHHHHhcCCCEEEeCC
Confidence 4799999999 999999987653 4778888875
No 113
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=72.16 E-value=8 Score=41.16 Aligned_cols=77 Identities=23% Similarity=0.236 Sum_probs=43.3
Q ss_pred cEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEEcC
Q psy5950 172 LTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICLGG 251 (511)
Q Consensus 172 ~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvLGG 251 (511)
++++||+-..-.. ...+.++.+.|.+. ++.+.+-..+...+ ....+.+....+ ...++|+||.+||
T Consensus 23 ~~~livt~~~~~~-~~~~~~v~~~L~~~-~~~~~~f~~v~~~~------~~~~v~~~~~~~------~~~~~D~IIaiGG 88 (386)
T cd08191 23 SRALIVTDERMAG-TPVFAELVQALAAA-GVEVEVFDGVLPDL------PRSELCDAASAA------ARAGPDVIIGLGG 88 (386)
T ss_pred CeEEEEECcchhh-cchHHHHHHHHHHc-CCeEEEECCCCCCc------CHHHHHHHHHHH------HhcCCCEEEEeCC
Confidence 6899999432111 35677888888754 45544333222111 111111111111 1257899999999
Q ss_pred chhHHHHHHHcC
Q psy5950 252 DGTLLYASLLFQ 263 (511)
Q Consensus 252 DGTlL~Aar~~~ 263 (511)
|.++-+++.+.
T Consensus 89 -GS~iD~aK~ia 99 (386)
T cd08191 89 -GSCIDLAKIAG 99 (386)
T ss_pred -chHHHHHHHHH
Confidence 99999998753
No 114
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=72.16 E-value=3.2 Score=50.82 Aligned_cols=44 Identities=20% Similarity=0.257 Sum_probs=34.2
Q ss_pred CCccEEEEEcCchhHHHHHHHcCC----------CCCcEEEEeC-------C-----CccccccCC
Q psy5950 241 DKIDFIICLGGDGTLLYASLLFQQ----------SVPPVMAFHL-------G-----SLGFLTPFE 284 (511)
Q Consensus 241 ~~~DlVIvLGGDGTlL~Aar~~~~----------~~~PILGINl-------G-----~LGFLt~~~ 284 (511)
.++|.+|++|||||+-.|+.+... ..+||+||-. | ++||-|..+
T Consensus 799 ~~Id~LVvIGGDgS~t~A~~Lae~~~~~~~~~~~~gi~VIgVPkTIDNDl~~~~te~TiGFDTA~~ 864 (1328)
T PTZ00468 799 FNMRAIAIVGNSEAATFGASLSEQLICMSLNGMKSEIPVVFVPVCLENSISHQMIETCIGFDSVTK 864 (1328)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHHHhhhccccccCCCcEEEeCccccCCCCCCCccccccHHhHHH
Confidence 468999999999999999887543 3799999843 2 567777654
No 115
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=71.91 E-value=7.2 Score=42.04 Aligned_cols=76 Identities=16% Similarity=0.202 Sum_probs=43.0
Q ss_pred cEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEEcC
Q psy5950 172 LTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICLGG 251 (511)
Q Consensus 172 ~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvLGG 251 (511)
++++||+-.. -.-...+.++.+.|++. ++.+.+-..+...+ ....+.+-+..+ ...++|+||.+||
T Consensus 24 ~~vlivt~~~-~~~~g~~~~v~~~L~~~-gi~~~~f~~v~~~p------~~~~v~~~~~~~------~~~~~D~IIaiGG 89 (414)
T cd08190 24 RRVCLVTDPN-LAQLPPVKVVLDSLEAA-GINFEVYDDVRVEP------TDESFKDAIAFA------KKGQFDAFVAVGG 89 (414)
T ss_pred CeEEEEECcc-hhhcchHHHHHHHHHHc-CCcEEEeCCCCCCc------CHHHHHHHHHHH------HhcCCCEEEEeCC
Confidence 6899998433 11223568899999754 44444333222222 111121111111 1246899999999
Q ss_pred chhHHHHHHHc
Q psy5950 252 DGTLLYASLLF 262 (511)
Q Consensus 252 DGTlL~Aar~~ 262 (511)
|+++-+++.+
T Consensus 90 -GSviD~AKai 99 (414)
T cd08190 90 -GSVIDTAKAA 99 (414)
T ss_pred -ccHHHHHHHH
Confidence 8999888764
No 116
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=71.78 E-value=3.6 Score=48.02 Aligned_cols=55 Identities=25% Similarity=0.289 Sum_probs=40.1
Q ss_pred CCccEEEEEcCchhHHHHHHHcC------CCCCcEEEEeC-------C---CccccccCCcccHHHHHHHHHc
Q psy5950 241 DKIDFIICLGGDGTLLYASLLFQ------QSVPPVMAFHL-------G---SLGFLTPFEFENFEDQVTNVLE 297 (511)
Q Consensus 241 ~~~DlVIvLGGDGTlL~Aar~~~------~~~~PILGINl-------G---~LGFLt~~~~~~~~~~L~~il~ 297 (511)
.++|.+|++|||||+-.|..+.. ...+||+||-. | ++||-|..+ .+.++++++..
T Consensus 477 ~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~~i~vvgIPkTIDNDi~gtd~t~GfdTA~~--~~~~~id~i~~ 547 (745)
T TIGR02478 477 HKIDGLLIIGGFEAFEALLQLEQAREKYPAFRIPMVVIPATISNNVPGTEYSLGSDTALN--EITEYCDNIKQ 547 (745)
T ss_pred cCCCEEEEeCChHHHHHHHHHHHHHhhCCCCCccEEEecccccCCCCCCccCCCHHHHHH--HHHHHHHHHHH
Confidence 36899999999999988877654 25699999843 2 788888765 34555665543
No 117
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=71.29 E-value=3.8 Score=47.92 Aligned_cols=55 Identities=22% Similarity=0.193 Sum_probs=40.6
Q ss_pred CCccEEEEEcCchhHHHHHHHcC------CCCCcEEEEeC-------C---CccccccCCcccHHHHHHHHHc
Q psy5950 241 DKIDFIICLGGDGTLLYASLLFQ------QSVPPVMAFHL-------G---SLGFLTPFEFENFEDQVTNVLE 297 (511)
Q Consensus 241 ~~~DlVIvLGGDGTlL~Aar~~~------~~~~PILGINl-------G---~LGFLt~~~~~~~~~~L~~il~ 297 (511)
.++|.+|++|||||+-.|..+.+ ..++|++||-. | ++||=|.++ .+-++++++..
T Consensus 477 ~~Id~LivIGGdgs~~~a~~L~~~~~~y~~~~i~vVgIPkTIDNDv~gTd~siGfdTAln--~~~~~id~i~~ 547 (762)
T cd00764 477 YGIDGLIIVGGFEAYKGLLQLREAREQYEEFCIPMVLIPATVSNNVPGTDFSLGSDTALN--ALMKYCDRIKQ 547 (762)
T ss_pred cCCCEEEEECChhHHHHHHHHHHHHhhCCCCCccEEEecccccCCCCCCcCCCCHHHHHH--HHHHHHHHHHH
Confidence 46899999999999988876654 25799999843 3 788888765 45556666643
No 118
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=70.78 E-value=3.5 Score=38.95 Aligned_cols=36 Identities=19% Similarity=0.194 Sum_probs=26.0
Q ss_pred CCccEEEEEcCchhHH-----HHHHHcCCCCCcEEEEeCCC
Q psy5950 241 DKIDFIICLGGDGTLL-----YASLLFQQSVPPVMAFHLGS 276 (511)
Q Consensus 241 ~~~DlVIvLGGDGTlL-----~Aar~~~~~~~PILGINlG~ 276 (511)
..+|.||+.||.|+.. ...+......+|||||-+|.
T Consensus 41 ~~~dgvil~gG~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~ 81 (184)
T cd01743 41 LNPDAIVISPGPGHPEDAGISLEIIRALAGKVPILGVCLGH 81 (184)
T ss_pred cCCCEEEECCCCCCcccchhHHHHHHHHhcCCCEEEECHhH
Confidence 4689999999999843 23333234579999999884
No 119
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=70.55 E-value=34 Score=29.51 Aligned_cols=92 Identities=12% Similarity=0.172 Sum_probs=54.4
Q ss_pred cEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEEcC
Q psy5950 172 LTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICLGG 251 (511)
Q Consensus 172 ~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvLGG 251 (511)
++|+++.-..=....-...++-+.|.++ ++.+-++.-.. . . .+...+++|+||+-.
T Consensus 3 ~kILvvCgsG~~TS~m~~~ki~~~l~~~-gi~~~v~~~~~-----~-------------e----~~~~~~~~D~iv~t~- 58 (94)
T PRK10310 3 RKIIVACGGAVATSTMAAEEIKELCQSH-NIPVELIQCRV-----N-------------E----IETYMDGVHLICTTA- 58 (94)
T ss_pred CeEEEECCCchhHHHHHHHHHHHHHHHC-CCeEEEEEecH-----H-------------H----HhhhcCCCCEEEECC-
Confidence 4799999765444444457888888764 55554443100 0 0 011124579886532
Q ss_pred chhHHHHHHHcCCCCCcEEEEeCCCccccccCCcccHHHHHHHHHcC
Q psy5950 252 DGTLLYASLLFQQSVPPVMAFHLGSLGFLTPFEFENFEDQVTNVLEG 298 (511)
Q Consensus 252 DGTlL~Aar~~~~~~~PILGINlG~LGFLt~~~~~~~~~~L~~il~G 298 (511)
+ + ...+ .++|++-+ ++||+.++.+++++.|..++.|
T Consensus 59 ~---~--~~~~--~~ip~~~~----~~llt~~~~~~~~e~i~~~l~~ 94 (94)
T PRK10310 59 R---V--DRSF--GDIPLVHG----MPFVSGVGIEALQNKILTILQG 94 (94)
T ss_pred c---c--cccc--CCCCEEEE----eecccccCHHHHHHHHHHHHcC
Confidence 1 1 1111 15775433 4799999999999999988876
No 120
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=70.16 E-value=7.5 Score=36.75 Aligned_cols=35 Identities=20% Similarity=0.236 Sum_probs=26.0
Q ss_pred CccEEEEEcCchh------HHHHHHHcCCCCCcEEEEeCCC
Q psy5950 242 KIDFIICLGGDGT------LLYASLLFQQSVPPVMAFHLGS 276 (511)
Q Consensus 242 ~~DlVIvLGGDGT------lL~Aar~~~~~~~PILGINlG~ 276 (511)
++|.||..||-|. .+...+.+...++|||||-+|.
T Consensus 39 ~~dgiil~GG~~~~~~~~~~~~~~~~~~~~~~PvlGIC~G~ 79 (178)
T cd01744 39 DPDGIFLSNGPGDPALLDEAIKTVRKLLGKKIPIFGICLGH 79 (178)
T ss_pred CCCEEEECCCCCChhHhHHHHHHHHHHHhCCCCEEEECHHH
Confidence 5799999999654 3444555555679999999883
No 121
>PTZ00287 6-phosphofructokinase; Provisional
Probab=70.04 E-value=4 Score=50.37 Aligned_cols=55 Identities=24% Similarity=0.356 Sum_probs=38.2
Q ss_pred CCccEEEEEcCchhHHHHHHHcC---CCCCc--EEEEeC-------C-----CccccccCCcccHHHHHHHHHc
Q psy5950 241 DKIDFIICLGGDGTLLYASLLFQ---QSVPP--VMAFHL-------G-----SLGFLTPFEFENFEDQVTNVLE 297 (511)
Q Consensus 241 ~~~DlVIvLGGDGTlL~Aar~~~---~~~~P--ILGINl-------G-----~LGFLt~~~~~~~~~~L~~il~ 297 (511)
.++|.+|++|||||+-.|+.+.. ..+.| |+||-. | ++||=|..+ -+.++|.++..
T Consensus 927 l~ID~LVvIGGDgS~t~A~~LaE~f~~~gi~i~VIGVPkTIDNDL~~~~tD~TiGFDTAv~--~~seaI~nL~~ 998 (1419)
T PTZ00287 927 LQLNGLVMPGSNVTITEAALLAEYFLEKKIPTSVVGIPLTGSNNLIHELIETCVGFDSSTK--VYASLIGNVLT 998 (1419)
T ss_pred hCCCEEEEECCchHHHHHHHHHHHHHhcCCCccEEEeCceeeCCCCCCCCcCCCCHHHHHH--HHHHHHHHHHH
Confidence 37899999999999999888654 24566 999843 3 667766544 34455555543
No 122
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=69.12 E-value=4.2 Score=42.65 Aligned_cols=75 Identities=23% Similarity=0.243 Sum_probs=44.6
Q ss_pred cEEEEEecCCChhhHH--HHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEE
Q psy5950 172 LTVLVIKKVRDVSVLQ--PFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICL 249 (511)
Q Consensus 172 ~~VlII~K~~~~~~~~--~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvL 249 (511)
.+++||+- +.+.. .+.++.+.|++ .++.+.+...+...+ .+..+.+-...+. ..++|+||.+
T Consensus 22 gr~lvVt~---~~~~~~~~~~~v~~~L~~-~~i~~~~~~~~~~~p------~~~~v~~~~~~~~------~~~~D~IIai 85 (366)
T PF00465_consen 22 GRVLVVTD---PSLSKSGLVDRVLDALEE-AGIEVQVFDGVGPNP------TLEDVDEAAEQAR------KFGADCIIAI 85 (366)
T ss_dssp TEEEEEEE---HHHHHHTHHHHHHHHHHH-TTCEEEEEEEESSS-------BHHHHHHHHHHHH------HTTSSEEEEE
T ss_pred CCEEEEEC---chHHhCccHHHHHHHHhh-CceEEEEEecCCCCC------cHHHHHHHHHHHH------hcCCCEEEEc
Confidence 38999993 33433 57888888975 455665444333222 1222221111111 2368999999
Q ss_pred cCchhHHHHHHHcC
Q psy5950 250 GGDGTLLYASLLFQ 263 (511)
Q Consensus 250 GGDGTlL~Aar~~~ 263 (511)
|| |+.+.+++.+.
T Consensus 86 GG-GS~~D~aK~va 98 (366)
T PF00465_consen 86 GG-GSVMDAAKAVA 98 (366)
T ss_dssp ES-HHHHHHHHHHH
T ss_pred CC-CCcCcHHHHHH
Confidence 99 99999998653
No 123
>KOG2387|consensus
Probab=69.05 E-value=15 Score=40.70 Aligned_cols=96 Identities=19% Similarity=0.292 Sum_probs=55.7
Q ss_pred CCcEEEEEecCCCh--hhHHHHHHHHHHHHh--cCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccE
Q psy5950 170 PPLTVLVIKKVRDV--SVLQPFVKLVKWLIQ--EKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDF 245 (511)
Q Consensus 170 ~p~~VlII~K~~~~--~~~~~~~el~~~L~~--~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~Dl 245 (511)
.+-+|++|.|.-+- +-+...+.|..--.. ++-...|++..-.|.....+++. .|.... +....+|-
T Consensus 297 ~~V~IalVGKYt~l~DsY~Sv~KAL~Ha~~~~~~kl~i~wi~s~dLE~~t~~e~~~---------~~~~aW-~~l~~adG 366 (585)
T KOG2387|consen 297 VPVRIALVGKYTKLSDSYLSVVKALEHAALAINRKLEIVWIDSSDLEPETEQEDPR---------KYHAAW-QKLKSADG 366 (585)
T ss_pred CcEEEEEEeccccchHHHHHHHHHHHHHHHHhcccceEEEEehhcccccccccChh---------HHHHHH-HHhccCCe
Confidence 56789999997532 222222222222111 23345778776555322222111 010011 12356899
Q ss_pred EEEEcCchh-----HHHHHHHcCCCCCcEEEEeCC
Q psy5950 246 IICLGGDGT-----LLYASLLFQQSVPPVMAFHLG 275 (511)
Q Consensus 246 VIvLGGDGT-----lL~Aar~~~~~~~PILGINlG 275 (511)
|++=||=|. ++.|++......+|.|||-+|
T Consensus 367 ilvPGGFG~RGveG~i~Aak~ARen~iP~LGiCLG 401 (585)
T KOG2387|consen 367 ILVPGGFGDRGVEGKILAAKWARENKIPFLGICLG 401 (585)
T ss_pred EEeCCcccccchhHHHHHHHHHHhcCCCeEeeehh
Confidence 999998764 677888888889999999988
No 124
>PLN02335 anthranilate synthase
Probab=69.04 E-value=19 Score=35.70 Aligned_cols=34 Identities=18% Similarity=0.227 Sum_probs=24.6
Q ss_pred CccEEEEEcCchhHH------HHHHHcCCCCCcEEEEeCCC
Q psy5950 242 KIDFIICLGGDGTLL------YASLLFQQSVPPVMAFHLGS 276 (511)
Q Consensus 242 ~~DlVIvLGGDGTlL------~Aar~~~~~~~PILGINlG~ 276 (511)
++|.||+.||-|..- ...+.+ ...+|||||-+|.
T Consensus 62 ~~d~iVisgGPg~p~d~~~~~~~~~~~-~~~~PiLGIClG~ 101 (222)
T PLN02335 62 NPRGVLISPGPGTPQDSGISLQTVLEL-GPLVPLFGVCMGL 101 (222)
T ss_pred CCCEEEEcCCCCChhhccchHHHHHHh-CCCCCEEEecHHH
Confidence 579999999998553 333333 3468999999884
No 125
>PRK13566 anthranilate synthase; Provisional
Probab=67.95 E-value=17 Score=42.45 Aligned_cols=79 Identities=16% Similarity=0.126 Sum_probs=48.3
Q ss_pred CCcEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEE
Q psy5950 170 PPLTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICL 249 (511)
Q Consensus 170 ~p~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvL 249 (511)
..++|+||-.- +. ....|.+||++. +..|.+-....... . .+ ..++|.||+.
T Consensus 525 ~g~~IlvID~~-ds----f~~~l~~~Lr~~-G~~v~vv~~~~~~~----------------~----~~--~~~~DgVVLs 576 (720)
T PRK13566 525 EGKRVLLVDHE-DS----FVHTLANYFRQT-GAEVTTVRYGFAEE----------------M----LD--RVNPDLVVLS 576 (720)
T ss_pred CCCEEEEEECC-Cc----hHHHHHHHHHHC-CCEEEEEECCCChh----------------H----hh--hcCCCEEEEC
Confidence 45689999864 22 245788899865 44443322111000 0 01 1358999999
Q ss_pred cCchh-----HHHHHHHcCCCCCcEEEEeCCC
Q psy5950 250 GGDGT-----LLYASLLFQQSVPPVMAFHLGS 276 (511)
Q Consensus 250 GGDGT-----lL~Aar~~~~~~~PILGINlG~ 276 (511)
||-|+ +....+.+...++|||||-+|.
T Consensus 577 gGpgsp~d~~~~~lI~~a~~~~iPILGIClG~ 608 (720)
T PRK13566 577 PGPGRPSDFDCKATIDAALARNLPIFGVCLGL 608 (720)
T ss_pred CCCCChhhCCcHHHHHHHHHCCCcEEEEehhH
Confidence 99875 3444455555689999999984
No 126
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=67.56 E-value=11 Score=40.16 Aligned_cols=75 Identities=17% Similarity=0.191 Sum_probs=42.4
Q ss_pred CcEEEEEecCCChhhHH--HHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEE
Q psy5950 171 PLTVLVIKKVRDVSVLQ--PFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIIC 248 (511)
Q Consensus 171 p~~VlII~K~~~~~~~~--~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIv 248 (511)
.++++||.-. .+.+ ...++.+.|.+. ++.+.+...+...+ ....+.+.+..+. ..++|+||.
T Consensus 28 ~~~~livt~~---~~~~~~~~~~v~~~L~~~-~~~~~~~~~v~~~p------~~~~v~~~~~~~~------~~~~d~IIa 91 (377)
T cd08188 28 AKKVLLVSDP---GVIKAGWVDRVIESLEEA-GLEYVVFSDVSPNP------RDEEVMAGAELYL------ENGCDVIIA 91 (377)
T ss_pred CCeEEEEeCc---chhhCccHHHHHHHHHHc-CCeEEEeCCCCCCC------CHHHHHHHHHHHH------hcCCCEEEE
Confidence 3689999842 2333 467788888754 44443332222211 1222221111111 246899999
Q ss_pred EcCchhHHHHHHHc
Q psy5950 249 LGGDGTLLYASLLF 262 (511)
Q Consensus 249 LGGDGTlL~Aar~~ 262 (511)
+|| |..+-+++.+
T Consensus 92 iGG-GsviD~AK~i 104 (377)
T cd08188 92 VGG-GSPIDCAKGI 104 (377)
T ss_pred eCC-chHHHHHHHH
Confidence 999 9999999754
No 127
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=67.53 E-value=14 Score=36.97 Aligned_cols=36 Identities=25% Similarity=0.312 Sum_probs=25.0
Q ss_pred CCCccEEEEEcCchh-----HHHHHHHcCCCCCcEEEEeCC
Q psy5950 240 TDKIDFIICLGGDGT-----LLYASLLFQQSVPPVMAFHLG 275 (511)
Q Consensus 240 ~~~~DlVIvLGGDGT-----lL~Aar~~~~~~~PILGINlG 275 (511)
..++|.||.-||-|+ .+.+.+.....++|+|||-+|
T Consensus 53 l~~~dgivl~GG~~~~~~~~~~~~i~~~~~~~~PvlGIClG 93 (235)
T cd01746 53 LKGADGILVPGGFGIRGVEGKILAIKYARENNIPFLGICLG 93 (235)
T ss_pred hccCCEEEECCCCCCcchhhHHHHHHHHHHCCceEEEEEhH
Confidence 346788888888432 233445555568999999987
No 128
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=67.22 E-value=16 Score=42.63 Aligned_cols=78 Identities=18% Similarity=0.140 Sum_probs=46.8
Q ss_pred CcEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEEc
Q psy5950 171 PLTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICLG 250 (511)
Q Consensus 171 p~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvLG 250 (511)
.++|+||-.. +. ....+.+||++. +..+.+-...... .+ .+ ..++|.||+.|
T Consensus 516 ~~~IlVID~g-ds----~~~~l~~~L~~~-G~~v~vv~~~~~~--------------~~------~~--~~~~DgLILsg 567 (717)
T TIGR01815 516 GRRILLVDHE-DS----FVHTLANYLRQT-GASVTTLRHSHAE--------------AA------FD--ERRPDLVVLSP 567 (717)
T ss_pred CCEEEEEECC-Ch----hHHHHHHHHHHC-CCeEEEEECCCCh--------------hh------hh--hcCCCEEEEcC
Confidence 5689999753 32 245788888865 4444322110000 00 00 13589999999
Q ss_pred CchhH-----HHHHHHcCCCCCcEEEEeCCC
Q psy5950 251 GDGTL-----LYASLLFQQSVPPVMAFHLGS 276 (511)
Q Consensus 251 GDGTl-----L~Aar~~~~~~~PILGINlG~ 276 (511)
|-|+. ....+.+...++|||||-+|.
T Consensus 568 GPGsp~d~~~~~~I~~~~~~~iPvLGICLG~ 598 (717)
T TIGR01815 568 GPGRPADFDVAGTIDAALARGLPVFGVCLGL 598 (717)
T ss_pred CCCCchhcccHHHHHHHHHCCCCEEEECHHH
Confidence 99885 333444445689999999984
No 129
>PRK08250 glutamine amidotransferase; Provisional
Probab=66.70 E-value=27 Score=34.83 Aligned_cols=36 Identities=22% Similarity=0.301 Sum_probs=25.0
Q ss_pred CCccEEEEEcCchhH---------------HHHHHHcCCCCCcEEEEeCCC
Q psy5950 241 DKIDFIICLGGDGTL---------------LYASLLFQQSVPPVMAFHLGS 276 (511)
Q Consensus 241 ~~~DlVIvLGGDGTl---------------L~Aar~~~~~~~PILGINlG~ 276 (511)
.++|.+|+.||=.+. ....+.+...++|||||-.|.
T Consensus 44 ~~~d~vii~GGp~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~PvlGIC~G~ 94 (235)
T PRK08250 44 DGFDLLIVMGGPQSPRTTREECPYFDSKAEQRLINQAIKAGKAVIGVCLGA 94 (235)
T ss_pred cccCEEEECCCCCChhhccccccccchHHHHHHHHHHHHcCCCEEEEChhH
Confidence 468999999994331 223344445689999999884
No 130
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=66.14 E-value=14 Score=41.52 Aligned_cols=85 Identities=18% Similarity=0.265 Sum_probs=51.3
Q ss_pred CcEEEEEecCCChhhHHHHHHHHHHHHhcC---CeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEE
Q psy5950 171 PLTVLVIKKVRDVSVLQPFVKLVKWLIQEK---SMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFII 247 (511)
Q Consensus 171 p~~VlII~K~~~~~~~~~~~el~~~L~~~~---~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVI 247 (511)
..+|++|.|..+ ...+...+.+.|...+ ++.|.+. ......+ ... ..+..+++|.||
T Consensus 289 ~v~IalVGKY~~--~~daY~SI~eAL~~ag~~~~~~V~~~--~i~se~i-------------~~~---~~~~L~~~dGIi 348 (525)
T TIGR00337 289 EVTIGIVGKYVE--LKDSYLSVIEALKHAGAKLDTKVNIK--WIDSEDL-------------EEE---GAEFLKGVDGIL 348 (525)
T ss_pred CcEEEEEeCCcC--CHHHHHHHHHHHHhCccccCCEEEEE--EecHHHh-------------hhh---hhhhhcCCCEEE
Confidence 468999999754 4445578899997653 2222221 1111000 000 001235589999
Q ss_pred EEcCchh-----HHHHHHHcCCCCCcEEEEeCC
Q psy5950 248 CLGGDGT-----LLYASLLFQQSVPPVMAFHLG 275 (511)
Q Consensus 248 vLGGDGT-----lL~Aar~~~~~~~PILGINlG 275 (511)
.-||=|. .+.+++.+...++|+|||-+|
T Consensus 349 LpGG~G~~~~~g~i~ai~~a~e~~iP~LGIClG 381 (525)
T TIGR00337 349 VPGGFGERGVEGKILAIKYARENNIPFLGICLG 381 (525)
T ss_pred eCCCCCChhhcChHHHHHHHHHcCCCEEEEcHH
Confidence 9998754 445677666678999999987
No 131
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=65.50 E-value=6.9 Score=35.49 Aligned_cols=79 Identities=11% Similarity=0.069 Sum_probs=53.6
Q ss_pred cEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEEcC
Q psy5950 172 LTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICLGG 251 (511)
Q Consensus 172 ~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvLGG 251 (511)
++|+|++-++.++-.+.+.+|+++|++..|++|.++...... +... . ...| ......++|.||++=-
T Consensus 1 ~kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~--i~~~-g-------~~~W---~~~~~~~ad~Vliv~S 67 (150)
T PF08357_consen 1 RKVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNE--IARQ-G-------PPRW---MERQIREADKVLIVCS 67 (150)
T ss_pred CeEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcc--cccC-C-------HHHH---HHHHHhcCCEEEEEec
Confidence 589999999888888999999999997658999988643321 0000 0 0111 1122467899999988
Q ss_pred chhHHHHHHHcC
Q psy5950 252 DGTLLYASLLFQ 263 (511)
Q Consensus 252 DGTlL~Aar~~~ 263 (511)
-|+.-.......
T Consensus 68 ~~~~~~~~~~~~ 79 (150)
T PF08357_consen 68 PGYKERYDKKAD 79 (150)
T ss_pred cchhHHHHHhhc
Confidence 888766655543
No 132
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=65.40 E-value=5.4 Score=46.59 Aligned_cols=55 Identities=20% Similarity=0.382 Sum_probs=39.2
Q ss_pred CCccEEEEEcCchhHHHHHHHcC----------------------CCCCcEEEEeC-------C---CccccccCCcccH
Q psy5950 241 DKIDFIICLGGDGTLLYASLLFQ----------------------QSVPPVMAFHL-------G---SLGFLTPFEFENF 288 (511)
Q Consensus 241 ~~~DlVIvLGGDGTlL~Aar~~~----------------------~~~~PILGINl-------G---~LGFLt~~~~~~~ 288 (511)
.++|.+|++|||||+-.|..+.+ ...+||+||-- | ++||-|..+ .+
T Consensus 93 ~~Id~LivIGGdgS~~~a~~l~~e~~~~~~~l~~~~~i~~~~~~~~~~l~vvGiPkTIDNDl~gTd~TiGfdTA~~--~i 170 (745)
T TIGR02478 93 RGIDNLVVIGGDGSLTGADLFREEWPSLLEELVDTGKITAEQAEEHRHLTIVGLVGSIDNDMCGTDMTIGADSALH--RI 170 (745)
T ss_pred hCCCEEEEECChhHHHHHHHHHHHhHHHHHHHHHccchhHHHHhcCCCCcEEEEccccccCCCCCcCCCCHHHHHH--HH
Confidence 47899999999999988764322 23789999842 3 688888765 45
Q ss_pred HHHHHHHHc
Q psy5950 289 EDQVTNVLE 297 (511)
Q Consensus 289 ~~~L~~il~ 297 (511)
-++|+++..
T Consensus 171 ~~aid~i~~ 179 (745)
T TIGR02478 171 CEAIDAISS 179 (745)
T ss_pred HHHHHHHHh
Confidence 566666654
No 133
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=65.22 E-value=19 Score=37.33 Aligned_cols=32 Identities=16% Similarity=0.268 Sum_probs=27.0
Q ss_pred CccEEEEEcCchhHHHHHHHcCC-CCCcEEEEeC
Q psy5950 242 KIDFIICLGGDGTLLYASLLFQQ-SVPPVMAFHL 274 (511)
Q Consensus 242 ~~DlVIvLGGDGTlL~Aar~~~~-~~~PILGINl 274 (511)
+.|+||.+|| |+++-+++.+.. .++|++.|.+
T Consensus 75 ~~d~iIaiGG-Gsv~D~aK~vA~~~~~p~i~vPT 107 (331)
T cd08174 75 NVDAVVGIGG-GKVIDVAKYAAFLRGIPLSVPTT 107 (331)
T ss_pred CCCEEEEeCC-cHHHHHHHHHHhhcCCCEEEecC
Confidence 5799999999 999999997653 4788888875
No 134
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=65.22 E-value=18 Score=36.41 Aligned_cols=58 Identities=19% Similarity=0.242 Sum_probs=41.9
Q ss_pred CCCCCCccEEEEEcCchhHHHHHHHcCCCCCcEEEEeC-----------------CCccccccC---CcccHHHHHHHHH
Q psy5950 237 DDLTDKIDFIICLGGDGTLLYASLLFQQSVPPVMAFHL-----------------GSLGFLTPF---EFENFEDQVTNVL 296 (511)
Q Consensus 237 ~~~~~~~DlVIvLGGDGTlL~Aar~~~~~~~PILGINl-----------------G~LGFLt~~---~~~~~~~~L~~il 296 (511)
.++...+|++|+-+|-+|++.|... ++|++.+.. +..|++.+. +.+++.++|..++
T Consensus 247 ~~~l~~ad~~v~~sg~~t~~Eam~~----G~Pvv~~~~~~~~~~~~~~~~~~l~~~g~g~~v~~~~~~~~~l~~~i~~ll 322 (350)
T cd03785 247 AAAYAAADLVISRAGASTVAELAAL----GLPAILIPLPYAADDHQTANARALVKAGAAVLIPQEELTPERLAAALLELL 322 (350)
T ss_pred HHHHHhcCEEEECCCHhHHHHHHHh----CCCEEEeecCCCCCCcHHHhHHHHHhCCCEEEEecCCCCHHHHHHHHHHHh
Confidence 3445688999998887787777755 789998643 234777653 5788888888887
Q ss_pred cC
Q psy5950 297 EG 298 (511)
Q Consensus 297 ~G 298 (511)
+.
T Consensus 323 ~~ 324 (350)
T cd03785 323 SD 324 (350)
T ss_pred cC
Confidence 63
No 135
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=64.49 E-value=24 Score=41.74 Aligned_cols=79 Identities=22% Similarity=0.198 Sum_probs=42.7
Q ss_pred CCcEEEEEecCCChhhHHHHHHHHHHHHh-cCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEE
Q psy5950 170 PPLTVLVIKKVRDVSVLQPFVKLVKWLIQ-EKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIIC 248 (511)
Q Consensus 170 ~p~~VlII~K~~~~~~~~~~~el~~~L~~-~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIv 248 (511)
..++++||.-.. -.....+.++.+.|.. ..++.+.+-..+...+. ...+.+-...+ ...++|+||.
T Consensus 479 ~~~~~lvVtd~~-~~~~g~~~~v~~~L~~~~~~i~~~~~~~v~~np~------~~~v~~~~~~~------~~~~~D~IIa 545 (862)
T PRK13805 479 GKKRAFIVTDRF-MVELGYVDKVTDVLKKRENGVEYEVFSEVEPDPT------LSTVRKGAELM------RSFKPDTIIA 545 (862)
T ss_pred CCCEEEEEECcc-hhhcchHHHHHHHHhcccCCCeEEEeCCCCCCcC------HHHHHHHHHHH------HhcCCCEEEE
Confidence 347888888422 1112256678888862 23455444333322221 11111111111 0246899999
Q ss_pred EcCchhHHHHHHHc
Q psy5950 249 LGGDGTLLYASLLF 262 (511)
Q Consensus 249 LGGDGTlL~Aar~~ 262 (511)
+|| |+++-+++.+
T Consensus 546 iGG-GSviD~AK~i 558 (862)
T PRK13805 546 LGG-GSPMDAAKIM 558 (862)
T ss_pred eCC-chHHHHHHHH
Confidence 999 8999998875
No 136
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=64.48 E-value=24 Score=38.00 Aligned_cols=34 Identities=15% Similarity=0.305 Sum_probs=26.6
Q ss_pred CCccEEEEEcCchhHHHHHHHcC---CCCCcEEEEeCC
Q psy5950 241 DKIDFIICLGGDGTLLYASLLFQ---QSVPPVMAFHLG 275 (511)
Q Consensus 241 ~~~DlVIvLGGDGTlL~Aar~~~---~~~~PILGINlG 275 (511)
.+.|+||.+|| |+++-++..+. ..++|++-|.+=
T Consensus 110 dr~d~IIaiGG-Gsv~D~ak~iA~~~~rgip~I~IPTT 146 (389)
T PRK06203 110 DRHSYVLAIGG-GAVLDMVGYAAATAHRGVRLIRIPTT 146 (389)
T ss_pred CCCceEEEeCC-cHHHHHHHHHHHHhcCCCCEEEEcCC
Confidence 45679999999 99999987663 347888888753
No 137
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=63.12 E-value=1.5e+02 Score=29.57 Aligned_cols=101 Identities=22% Similarity=0.299 Sum_probs=63.5
Q ss_pred EEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEE----
Q psy5950 173 TVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIIC---- 248 (511)
Q Consensus 173 ~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIv---- 248 (511)
+|+||- +++++. .-|..+|.++ +..|....+..+. +..+ . .. +|+||.
T Consensus 2 ~ILive--Dd~~i~---~~l~~~L~~~-g~~v~~~~~~~~a---------------~~~~----~--~~-~dlviLD~~l 53 (229)
T COG0745 2 RILLVE--DDPELA---ELLKEYLEEE-GYEVDVAADGEEA---------------LEAA----R--EQ-PDLVLLDLML 53 (229)
T ss_pred eEEEEc--CCHHHH---HHHHHHHHHC-CCEEEEECCHHHH---------------HHHH----h--cC-CCEEEEECCC
Confidence 688887 566554 4466677654 5555443322110 0000 0 12 777776
Q ss_pred EcCch-hHHHHHHHcCCCCCcEEEEe-------------CCCccccc-cCCcccHHHHHHHHHcCCcE
Q psy5950 249 LGGDG-TLLYASLLFQQSVPPVMAFH-------------LGSLGFLT-PFEFENFEDQVTNVLEGHAA 301 (511)
Q Consensus 249 LGGDG-TlL~Aar~~~~~~~PILGIN-------------lG~LGFLt-~~~~~~~~~~L~~il~G~~~ 301 (511)
-++|| ++++-.|......+||+-+. .|-=-|++ ||++.++...|..++.....
T Consensus 54 P~~dG~~~~~~iR~~~~~~~PIi~Lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR~~~ 121 (229)
T COG0745 54 PDLDGLELCRRLRAKKGSGPPIIVLTARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRRNAG 121 (229)
T ss_pred CCCCHHHHHHHHHhhcCCCCcEEEEECCCcHHHHHHHHhCcCCeeeeCCCCHHHHHHHHHHHHCcCcC
Confidence 36789 77887774456788897554 36667777 99999999999888876543
No 138
>PRK09065 glutamine amidotransferase; Provisional
Probab=61.79 E-value=26 Score=35.01 Aligned_cols=36 Identities=14% Similarity=0.066 Sum_probs=26.1
Q ss_pred CCccEEEEEcCchhH----------HHHHHHcCCCCCcEEEEeCCC
Q psy5950 241 DKIDFIICLGGDGTL----------LYASLLFQQSVPPVMAFHLGS 276 (511)
Q Consensus 241 ~~~DlVIvLGGDGTl----------L~Aar~~~~~~~PILGINlG~ 276 (511)
.++|.||+.||=.+. +...+.+...++|||||-+|+
T Consensus 53 ~~~dgvvi~Gg~~~~~d~~~w~~~~~~~i~~~~~~~~PvlGIC~G~ 98 (237)
T PRK09065 53 DDFAGVIITGSWAMVTDRLDWSERTADWLRQAAAAGMPLLGICYGH 98 (237)
T ss_pred hhcCEEEEeCCCcccCCCchhHHHHHHHHHHHHHCCCCEEEEChhH
Confidence 468999999997652 333344444689999999995
No 139
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=61.26 E-value=31 Score=36.62 Aligned_cols=92 Identities=13% Similarity=0.100 Sum_probs=49.1
Q ss_pred CcEEEEEecCCChhhHH-HHHHHHHHHHhcCC-eEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEE
Q psy5950 171 PLTVLVIKKVRDVSVLQ-PFVKLVKWLIQEKS-MLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIIC 248 (511)
Q Consensus 171 p~~VlII~K~~~~~~~~-~~~el~~~L~~~~~-~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIv 248 (511)
.++++||+-.+ +.+ ...++.+.|++.+. +.+++-..... ++.+..+.+-+..+. +.-.+.-|+||.
T Consensus 23 ~~rvlvVtd~~---v~~~~~~~l~~~L~~~g~~~~~~~~~~~e~------~k~~~~v~~~~~~~~---~~~~dr~~~IIA 90 (355)
T cd08197 23 ADKYLLVTDSN---VEDLYGHRLLEYLREAGAPVELLSVPSGEE------HKTLSTLSDLVERAL---ALGATRRSVIVA 90 (355)
T ss_pred CCeEEEEECcc---HHHHHHHHHHHHHHhcCCceEEEEeCCCCC------CCCHHHHHHHHHHHH---HcCCCCCcEEEE
Confidence 36899998533 333 55678888875432 22222211111 111111111111110 000122259999
Q ss_pred EcCchhHHHHHHHcC---CCCCcEEEEeCC
Q psy5950 249 LGGDGTLLYASLLFQ---QSVPPVMAFHLG 275 (511)
Q Consensus 249 LGGDGTlL~Aar~~~---~~~~PILGINlG 275 (511)
+|| |+++-++..+. ..++|++.|.+.
T Consensus 91 vGG-Gsv~D~ak~~A~~~~rgip~I~IPTT 119 (355)
T cd08197 91 LGG-GVVGNIAGLLAALLFRGIRLVHIPTT 119 (355)
T ss_pred ECC-cHHHHHHHHHHHHhccCCCEEEecCc
Confidence 999 99999998764 247899888873
No 140
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=60.95 E-value=7.7 Score=47.70 Aligned_cols=44 Identities=25% Similarity=0.350 Sum_probs=33.0
Q ss_pred CCccEEEEEcCchhHHHHHHHcC-----CCCCcEEEEeC-------C-----CccccccCC
Q psy5950 241 DKIDFIICLGGDGTLLYASLLFQ-----QSVPPVMAFHL-------G-----SLGFLTPFE 284 (511)
Q Consensus 241 ~~~DlVIvLGGDGTlL~Aar~~~-----~~~~PILGINl-------G-----~LGFLt~~~ 284 (511)
-++|.+|++|||||+-.|+.+.. +..++|+||-- | ++||=|...
T Consensus 195 l~Id~LVvIGGDgS~t~A~~LaEy~~~~g~~I~VIGIPKTIDNDL~g~~tD~S~GFdTA~k 255 (1328)
T PTZ00468 195 LKLHGLVVIGGDDSNTNAAVLAEYFKRNSSSTVVVGCPKTIDGDLKNEVIETSFGYDTAVK 255 (1328)
T ss_pred hCCCEEEEECCchHHHHHHHHHHHHHhcCCCeeEEEEeEEEcCCCCCCcCCCCCCHHHHHH
Confidence 36899999999999998887654 34589999842 2 667766544
No 141
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=60.36 E-value=8 Score=45.32 Aligned_cols=55 Identities=20% Similarity=0.301 Sum_probs=38.0
Q ss_pred CCccEEEEEcCchhHHHHHHHc----------------------CCCCCcEEEEeC-------C---CccccccCCcccH
Q psy5950 241 DKIDFIICLGGDGTLLYASLLF----------------------QQSVPPVMAFHL-------G---SLGFLTPFEFENF 288 (511)
Q Consensus 241 ~~~DlVIvLGGDGTlL~Aar~~----------------------~~~~~PILGINl-------G---~LGFLt~~~~~~~ 288 (511)
.++|.+|++|||||+-.|..+. ....++|+||-- | ++||-|..+ .+
T Consensus 96 ~~Id~LvvIGGdgSl~gA~~l~~e~~~l~~el~~~g~i~~~~~~~~~~l~vVGiPkTIDNDl~gTD~TiGfdTAl~--~i 173 (762)
T cd00764 96 RGITNLCVIGGDGSLTGADLFRSEWPSLLEELVKDGKITEEEVAKYQHLNIVGMVGSIDNDFCGTDMTIGTDSALH--RI 173 (762)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHhhhHHHHHHHhcCcccHHHHhcCCCceEEEeccceeCCCCCCcCCCCHHHHHH--HH
Confidence 4789999999999998876432 123678999732 3 688888765 34
Q ss_pred HHHHHHHHc
Q psy5950 289 EDQVTNVLE 297 (511)
Q Consensus 289 ~~~L~~il~ 297 (511)
-++|+++..
T Consensus 174 ~eaId~i~~ 182 (762)
T cd00764 174 CEVVDAITT 182 (762)
T ss_pred HHHHHHHHH
Confidence 555555543
No 142
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=60.05 E-value=20 Score=35.93 Aligned_cols=85 Identities=20% Similarity=0.228 Sum_probs=49.3
Q ss_pred CCcEEEEEecCCChhhHHHHHHHHHHHHhcC--CeEEEEcCCccccccccCCCCcccccccccccc-CCCCCCCCCccEE
Q psy5950 170 PPLTVLVIKKVRDVSVLQPFVKLVKWLIQEK--SMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFR-DGKDDLTDKIDFI 246 (511)
Q Consensus 170 ~p~~VlII~K~~~~~~~~~~~el~~~L~~~~--~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~-~~~~~~~~~~DlV 246 (511)
..+.|+|..-..+.. +++++|.+-. .+.|+ -.. ..+.. ..+ + .+..|. ....+....+|+|
T Consensus 191 ~~~~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~-g~~-~~~~~-~~n-----i--~~~~~~~~~~~~~m~~ad~v 254 (318)
T PF13528_consen 191 DEPKILVYFGGGGPG------DLIEALKALPDYQFIVF-GPN-AADPR-PGN-----I--HVRPFSTPDFAELMAAADLV 254 (318)
T ss_pred CCCEEEEEeCCCcHH------HHHHHHHhCCCCeEEEE-cCC-ccccc-CCC-----E--EEeecChHHHHHHHHhCCEE
Confidence 456788888665554 5566665543 33333 222 11111 011 1 012222 2234455678999
Q ss_pred EEEcCchhHHHHHHHcCCCCCcEEEEeC
Q psy5950 247 ICLGGDGTLLYASLLFQQSVPPVMAFHL 274 (511)
Q Consensus 247 IvLGGDGTlL~Aar~~~~~~~PILGINl 274 (511)
|+-||-+|+..++.+ ++|++-|-.
T Consensus 255 Is~~G~~t~~Ea~~~----g~P~l~ip~ 278 (318)
T PF13528_consen 255 ISKGGYTTISEALAL----GKPALVIPR 278 (318)
T ss_pred EECCCHHHHHHHHHc----CCCEEEEeC
Confidence 999999999998866 789987764
No 143
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=59.83 E-value=27 Score=32.84 Aligned_cols=37 Identities=24% Similarity=0.269 Sum_probs=26.4
Q ss_pred CCCccEEEEEcCchhH-----------HHHHHHcCCCCCcEEEEeCCC
Q psy5950 240 TDKIDFIICLGGDGTL-----------LYASLLFQQSVPPVMAFHLGS 276 (511)
Q Consensus 240 ~~~~DlVIvLGGDGTl-----------L~Aar~~~~~~~PILGINlG~ 276 (511)
.+++|.||.-||-++. +...+.+...+.|++||-.|.
T Consensus 44 ~~~~dgvil~Gg~~~~~~~~~~~~~~~~~~i~~~~~~~~pilgiC~G~ 91 (188)
T cd01741 44 LDDYDGLVILGGPMSVDEDDYPWLKKLKELIRQALAAGKPVLGICLGH 91 (188)
T ss_pred cccCCEEEECCCCccCCccCChHHHHHHHHHHHHHHCCCCEEEECccH
Confidence 3578999999997654 333344445679999999884
No 144
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=59.73 E-value=18 Score=36.55 Aligned_cols=84 Identities=14% Similarity=0.133 Sum_probs=45.4
Q ss_pred EEEEEecCC--Ch-hhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEE
Q psy5950 173 TVLVIKKVR--DV-SVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICL 249 (511)
Q Consensus 173 ~VlII~K~~--~~-~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvL 249 (511)
.|+|..... .. .........++.+.+.+++.|.+.....++.. .++..+.+|-+|..
T Consensus 9 ~Igi~~~~~~~~~~~~~~~~~~y~~~i~~aGg~pv~lp~~~~~~~~--------------------~~~~l~~~DGlil~ 68 (254)
T PRK11366 9 VIGVVMCRNRLKGHATQTLQEKYLNAIIHAGGLPIALPHALAEPSL--------------------LEQLLPKLDGIYLP 68 (254)
T ss_pred EEEEeCCCcccCcchHHHHHHHHHHHHHHCCCEEEEecCCCCCHHH--------------------HHHHHHhCCEEEeC
Confidence 588875221 11 11123345667777777777766632111000 11223457889999
Q ss_pred cCchhH----------------------HHHHHHcCCCCCcEEEEeCCC
Q psy5950 250 GGDGTL----------------------LYASLLFQQSVPPVMAFHLGS 276 (511)
Q Consensus 250 GGDGTl----------------------L~Aar~~~~~~~PILGINlG~ 276 (511)
||...+ +...+.+...++|||||-.|.
T Consensus 69 GG~~dv~P~~yg~~~~~~~~~~~rD~~e~~li~~a~~~~~PILGICrG~ 117 (254)
T PRK11366 69 GSPSNVQPHLYGENGDEPDADPGRDLLSMALINAALERRIPIFAICRGL 117 (254)
T ss_pred CCCCCcCHhhcCCCCCCCCCChhHHHHHHHHHHHHHHCCCCEEEECHhH
Confidence 973221 333444445689999999884
No 145
>PLN02834 3-dehydroquinate synthase
Probab=59.55 E-value=28 Score=38.12 Aligned_cols=32 Identities=16% Similarity=0.051 Sum_probs=24.8
Q ss_pred ccEEEEEcCchhHHHHHHHc---CCCCCcEEEEeCC
Q psy5950 243 IDFIICLGGDGTLLYASLLF---QQSVPPVMAFHLG 275 (511)
Q Consensus 243 ~DlVIvLGGDGTlL~Aar~~---~~~~~PILGINlG 275 (511)
.|+||.+|| |+++-++..+ ...++|++-|.+.
T Consensus 164 ~~~VIAiGG-Gsv~D~ak~~A~~y~rgiplI~VPTT 198 (433)
T PLN02834 164 RCTFVALGG-GVIGDMCGFAAASYQRGVNFVQIPTT 198 (433)
T ss_pred CcEEEEECC-hHHHHHHHHHHHHhcCCCCEEEECCc
Confidence 469999999 8999998854 2457888777663
No 146
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=59.07 E-value=27 Score=33.85 Aligned_cols=34 Identities=24% Similarity=0.307 Sum_probs=24.9
Q ss_pred CccEEEEEcCchhHH------HHHHHcCCCCCcEEEEeCCC
Q psy5950 242 KIDFIICLGGDGTLL------YASLLFQQSVPPVMAFHLGS 276 (511)
Q Consensus 242 ~~DlVIvLGGDGTlL------~Aar~~~~~~~PILGINlG~ 276 (511)
++|.||..||=|... ...+.+ ...+|||||-+|.
T Consensus 43 ~~d~iIlsgGP~~p~~~~~~~~~i~~~-~~~~PvLGIClG~ 82 (195)
T PRK07649 43 KPDFLMISPGPCSPNEAGISMEVIRYF-AGKIPIFGVCLGH 82 (195)
T ss_pred CCCEEEECCCCCChHhCCCchHHHHHh-cCCCCEEEEcHHH
Confidence 579999999988743 333333 3478999999884
No 147
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=59.05 E-value=35 Score=36.74 Aligned_cols=34 Identities=21% Similarity=0.347 Sum_probs=26.8
Q ss_pred CCccEEEEEcCchhHHHHHHHcC---CCCCcEEEEeCC
Q psy5950 241 DKIDFIICLGGDGTLLYASLLFQ---QSVPPVMAFHLG 275 (511)
Q Consensus 241 ~~~DlVIvLGGDGTlL~Aar~~~---~~~~PILGINlG 275 (511)
++.|+||.||| |.++-++..+. ..++|++-|.+-
T Consensus 98 ~r~~~IIalGG-G~v~D~ag~vA~~~~rGip~I~IPTT 134 (369)
T cd08198 98 DRHSYVIAIGG-GAVLDAVGYAAATAHRGVRLIRIPTT 134 (369)
T ss_pred CcCcEEEEECC-hHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 34579999999 99999987664 457898888754
No 148
>PRK15138 aldehyde reductase; Provisional
Probab=58.60 E-value=14 Score=39.57 Aligned_cols=75 Identities=19% Similarity=0.292 Sum_probs=41.0
Q ss_pred cEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEEcC
Q psy5950 172 LTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICLGG 251 (511)
Q Consensus 172 ~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvLGG 251 (511)
++++||+-...-.....+.++.+.|. ++.+.+...+..++ ....+.+-...+. ..++|+||.+||
T Consensus 30 ~~~livt~~~~~~~~g~~~~v~~~L~---~~~~~~f~~v~~~p------~~~~v~~~~~~~~------~~~~D~IIaiGG 94 (387)
T PRK15138 30 ARVLITYGGGSVKKTGVLDQVLDALK---GMDVLEFGGIEPNP------TYETLMKAVKLVR------EEKITFLLAVGG 94 (387)
T ss_pred CeEEEECCCchHHhcCcHHHHHHHhc---CCeEEEECCccCCC------CHHHHHHHHHHHH------HcCCCEEEEeCC
Confidence 68999973222233445667777774 33443333222222 1111211111110 247899999999
Q ss_pred chhHHHHHHHc
Q psy5950 252 DGTLLYASLLF 262 (511)
Q Consensus 252 DGTlL~Aar~~ 262 (511)
|..+-+++.+
T Consensus 95 -GS~iD~AK~i 104 (387)
T PRK15138 95 -GSVLDGTKFI 104 (387)
T ss_pred -hHHHHHHHHH
Confidence 8999888865
No 149
>COG1370 Prefoldin, molecular chaperone implicated in de novo protein folding, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=57.61 E-value=33 Score=32.76 Aligned_cols=112 Identities=18% Similarity=0.262 Sum_probs=69.3
Q ss_pred eeeeEEeecCCCCcEEEEEEEECCEEEEEEe-cCeeEEcCCCchhHHHhhcCCCccCCCCCceEEEEcCCCC-----CCC
Q psy5950 331 VLNEVVIDRGPSPYLSNIDLYLDGKLITSVQ-GDGLIVSTPTGSTAYAVAAGASMIHPSVPAIMVTPICPHS-----LSF 404 (511)
Q Consensus 331 ALNEVvI~Rg~~~~~~~i~v~idg~~v~~~r-gDGLIVSTPTGSTAYsLSAGGPIV~P~v~aivITPIcPhs-----Ls~ 404 (511)
.-+|+-|..+...++ =.|+.+|+.+.+.+ .||++.-|+-|.+=-=-+ +=+|..++++--...|+. ...
T Consensus 28 ~~~~v~~~~s~tGRi--RqV~~~G~~~~t~Ra~DG~~tL~~~Ga~~L~~~----l~~P~~RVvV~~E~e~f~r~Gk~VFa 101 (155)
T COG1370 28 FPDDVKIVLSKTGRI--RQVFVDGERIATVRANDGLFTLTIEGARRLHRA----LPFPRMRVVVSDEAEEFVRKGKSVFA 101 (155)
T ss_pred ccCCceEEEcCCCce--EEEEECCEEEEEEEcCCceEEechhhhHHHHhc----CCCCceEEEeccccHHHHHhccchhh
Confidence 346666654444444 34788999999999 999999998876644333 446777777766666653 111
Q ss_pred C------CEEeCCCCEEEEEEccCCC--CeEEEEEcCCceeecCCCCEEEEEEc
Q psy5950 405 R------PIVVPAGVELKISVSPDSR--NTAWVSFDGRNRQELLHGDSLRVTTS 450 (511)
Q Consensus 405 R------PiVlp~~~~I~I~v~~~sr--~~a~v~iDG~~~~~L~~Gd~V~I~~S 450 (511)
. |=+-|.+..+- +..+.+ ....+.+.|.+..+++.|.-|.|+.+
T Consensus 102 KfVi~~D~~iR~~dEvlV--Vne~d~LlAvGra~ls~~E~~~~~~G~AVkVr~G 153 (155)
T COG1370 102 KFVIDVDEEIRAGDEVLV--VNEDDELLAVGRALLSGAEMREFERGMAVKVREG 153 (155)
T ss_pred hheeccCcccCCCCeEEE--ECCCCcEEEeeeEeecHHHHhhccccEEEEEecC
Confidence 1 21222222221 222211 12356788888888999999998865
No 150
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=56.04 E-value=40 Score=32.46 Aligned_cols=36 Identities=19% Similarity=0.189 Sum_probs=25.9
Q ss_pred CCccEEEEEcCchhHH----------HHHHHcCCCCCcEEEEeCCC
Q psy5950 241 DKIDFIICLGGDGTLL----------YASLLFQQSVPPVMAFHLGS 276 (511)
Q Consensus 241 ~~~DlVIvLGGDGTlL----------~Aar~~~~~~~PILGINlG~ 276 (511)
.++|.||.-||-++.. ...+.+...+.|||||-.|.
T Consensus 42 ~~~d~iii~GG~~~~~~~~~~~~~~~~~i~~~~~~~~pilGIC~G~ 87 (200)
T PRK13527 42 PDCDALIIPGGESTTIGRLMKREGILDEIKEKIEEGLPILGTCAGL 87 (200)
T ss_pred ccCCEEEECCCcHHHHHHHHhhccHHHHHHHHHHCCCeEEEECHHH
Confidence 3589999999988753 23333334678999999884
No 151
>PRK05380 pyrG CTP synthetase; Validated
Probab=55.68 E-value=26 Score=39.64 Aligned_cols=36 Identities=25% Similarity=0.342 Sum_probs=26.8
Q ss_pred CCCccEEEEEcCch-----hHHHHHHHcCCCCCcEEEEeCC
Q psy5950 240 TDKIDFIICLGGDG-----TLLYASLLFQQSVPPVMAFHLG 275 (511)
Q Consensus 240 ~~~~DlVIvLGGDG-----TlL~Aar~~~~~~~PILGINlG 275 (511)
..++|-||+-||=| -.+.+++.+...++|+|||-+|
T Consensus 341 L~~~DGIIlpGGfG~~~~~g~i~~i~~a~e~~iPiLGIClG 381 (533)
T PRK05380 341 LKGVDGILVPGGFGERGIEGKILAIRYARENNIPFLGICLG 381 (533)
T ss_pred hhcCCEEEecCCCCccccccHHHHHHHHHHCCCcEEEEchH
Confidence 45688999988843 2455666666678999999987
No 152
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=55.55 E-value=17 Score=34.87 Aligned_cols=35 Identities=17% Similarity=0.202 Sum_probs=24.5
Q ss_pred CCccEEEEEcCch-----------------------hHHHHHHHcCCCCCcEEEEeCC
Q psy5950 241 DKIDFIICLGGDG-----------------------TLLYASLLFQQSVPPVMAFHLG 275 (511)
Q Consensus 241 ~~~DlVIvLGGDG-----------------------TlL~Aar~~~~~~~PILGINlG 275 (511)
..+|.||.-||-+ ......+.+...++|||||-.|
T Consensus 52 ~~~dglvl~GG~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~PilgiC~G 109 (189)
T cd01745 52 ELLDGLLLTGGGDVDPPLYGEEPHPELGPIDPERDAFELALLRAALERGKPILGICRG 109 (189)
T ss_pred hhCCEEEECCCCCCChhhcCCCCCcccCCCChhHHHHHHHHHHHHHHCCCCEEEEcch
Confidence 4578999999942 2244445554567899999988
No 153
>PRK05637 anthranilate synthase component II; Provisional
Probab=55.12 E-value=32 Score=33.79 Aligned_cols=35 Identities=26% Similarity=0.286 Sum_probs=25.3
Q ss_pred CccEEEEEcCchhHHHHH---HHcC--CCCCcEEEEeCCC
Q psy5950 242 KIDFIICLGGDGTLLYAS---LLFQ--QSVPPVMAFHLGS 276 (511)
Q Consensus 242 ~~DlVIvLGGDGTlL~Aa---r~~~--~~~~PILGINlG~ 276 (511)
++|.||..||-|..-.+. +.+. ...+|||||-+|.
T Consensus 44 ~~~~iIlsgGPg~~~d~~~~~~li~~~~~~~PiLGIClG~ 83 (208)
T PRK05637 44 NPDLICLSPGPGHPRDAGNMMALIDRTLGQIPLLGICLGF 83 (208)
T ss_pred CCCEEEEeCCCCCHHHhhHHHHHHHHHhCCCCEEEEcHHH
Confidence 578999999999885541 2221 1368999999884
No 154
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=54.66 E-value=77 Score=33.08 Aligned_cols=33 Identities=24% Similarity=0.282 Sum_probs=27.6
Q ss_pred CCCCCccEEEEEcCchhHHHHHHHcCCCCCcEEEEeC
Q psy5950 238 DLTDKIDFIICLGGDGTLLYASLLFQQSVPPVMAFHL 274 (511)
Q Consensus 238 ~~~~~~DlVIvLGGDGTlL~Aar~~~~~~~PILGINl 274 (511)
++...+|++|+-||-||++.|+.. ++|.+.+-.
T Consensus 287 ~ll~~~~~~I~hgG~~t~~Eal~~----G~P~v~~p~ 319 (392)
T TIGR01426 287 EILKKADAFITHGGMNSTMEALFN----GVPMVAVPQ 319 (392)
T ss_pred HHHhhCCEEEECCCchHHHHHHHh----CCCEEecCC
Confidence 455678999999999999998866 789988754
No 155
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=53.81 E-value=37 Score=38.14 Aligned_cols=33 Identities=27% Similarity=0.362 Sum_probs=28.6
Q ss_pred ccEEEEEcCchh-----HHHHHHHcCCCCCcEEEEeCC
Q psy5950 243 IDFIICLGGDGT-----LLYASLLFQQSVPPVMAFHLG 275 (511)
Q Consensus 243 ~DlVIvLGGDGT-----lL~Aar~~~~~~~PILGINlG 275 (511)
+|-|++-||=|. -+.|++.....++|.|||-+|
T Consensus 344 ~dgIlVPGGFG~RG~eGkI~Ai~yAREn~iP~lGIClG 381 (533)
T COG0504 344 VDGILVPGGFGYRGVEGKIAAIRYARENNIPFLGICLG 381 (533)
T ss_pred CCEEEeCCCCCcCchHHHHHHHHHHHhcCCCEEEEchh
Confidence 899999999764 567888888889999999988
No 156
>COG4069 Uncharacterized protein conserved in archaea [Function unknown]
Probab=53.30 E-value=11 Score=39.80 Aligned_cols=36 Identities=19% Similarity=0.347 Sum_probs=28.0
Q ss_pred CCCCccEEEEEcCchhHHHHHHHcCCCCCcEEEEeCC
Q psy5950 239 LTDKIDFIICLGGDGTLLYASLLFQQSVPPVMAFHLG 275 (511)
Q Consensus 239 ~~~~~DlVIvLGGDGTlL~Aar~~~~~~~PILGINlG 275 (511)
+.+..+++|++|-|=|.+ |+..+.+.++||+||--|
T Consensus 263 l~~~~~lvvTvGDDTT~v-agdIl~RfgipiiGItDg 298 (367)
T COG4069 263 LIEGAGLVVTVGDDTTEV-AGDILYRFGIPIIGITDG 298 (367)
T ss_pred hhccCceEEEEcCcchhH-HHHHHHhcCCcEEecccC
Confidence 345678999999996655 566667889999998655
No 157
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=52.55 E-value=22 Score=37.51 Aligned_cols=76 Identities=16% Similarity=0.202 Sum_probs=40.0
Q ss_pred cEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEEcC
Q psy5950 172 LTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICLGG 251 (511)
Q Consensus 172 ~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvLGG 251 (511)
++++||+-+. -.-...+.++.+.|.+ ....+ -..+..++ ....+.+-...+. +...++|+||.+||
T Consensus 24 ~r~lvVtd~~-~~~~g~~~~v~~~L~~-~~~~~--~~~v~~~p------t~~~v~~~~~~~~----~~~~~~D~IIaiGG 89 (355)
T TIGR03405 24 RRVVVVTFPE-ARALGLARRLEALLGG-RLAAL--IDDVAPNP------DVAQLDGLYARLW----GDEGACDLVIALGG 89 (355)
T ss_pred CeEEEEECcc-hhhcchHHHHHHHhcc-CcEEE--eCCCCCCc------CHHHHHHHHHHHH----hcCCCCCEEEEeCC
Confidence 6899998432 1123456777777753 22222 22222222 1111111111111 11135899999999
Q ss_pred chhHHHHHHHc
Q psy5950 252 DGTLLYASLLF 262 (511)
Q Consensus 252 DGTlL~Aar~~ 262 (511)
|+++-+++.+
T Consensus 90 -GSviD~aK~i 99 (355)
T TIGR03405 90 -GSVIDTAKVL 99 (355)
T ss_pred -ccHHHHHHHH
Confidence 9999988764
No 158
>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.
Probab=51.36 E-value=39 Score=32.50 Aligned_cols=36 Identities=36% Similarity=0.357 Sum_probs=26.5
Q ss_pred CCccEEEEEcCchhHHH----------HHHHcCCCCCcEEEEeCCC
Q psy5950 241 DKIDFIICLGGDGTLLY----------ASLLFQQSVPPVMAFHLGS 276 (511)
Q Consensus 241 ~~~DlVIvLGGDGTlL~----------Aar~~~~~~~PILGINlG~ 276 (511)
+++|.+|+-||.++... ..+.+...+.||+||-.|.
T Consensus 35 ~~~d~liipGG~~~~~~~l~~~~~l~~~i~~~~~~g~pilGIC~G~ 80 (184)
T TIGR03800 35 DEIDGLIIPGGESTTLSRLLDKYGMFEPLRNFILSGLPVFGTCAGL 80 (184)
T ss_pred ccCCEEEECCCCHHHHHHHHHhccHHHHHHHHHHcCCcEEEECHHH
Confidence 46899999999988632 2233334679999999885
No 159
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=50.86 E-value=46 Score=35.31 Aligned_cols=20 Identities=25% Similarity=0.283 Sum_probs=18.1
Q ss_pred CccEEEEEcCchhHHHHHHHc
Q psy5950 242 KIDFIICLGGDGTLLYASLLF 262 (511)
Q Consensus 242 ~~DlVIvLGGDGTlL~Aar~~ 262 (511)
++|+||.+|| |..+-+++.+
T Consensus 81 ~~D~IIaiGG-GS~iD~AKai 100 (347)
T cd08184 81 LPCAIVGIGG-GSTLDVAKAV 100 (347)
T ss_pred CCCEEEEeCC-cHHHHHHHHH
Confidence 7899999999 8999999875
No 160
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=50.01 E-value=5.7 Score=36.44 Aligned_cols=33 Identities=27% Similarity=0.407 Sum_probs=24.0
Q ss_pred CCCCCCCccEEEEEcCchhHHHHHHHcCCCCCcEEEE
Q psy5950 236 KDDLTDKIDFIICLGGDGTLLYASLLFQQSVPPVMAF 272 (511)
Q Consensus 236 ~~~~~~~~DlVIvLGGDGTlL~Aar~~~~~~~PILGI 272 (511)
..+....+|+||+-||=||+..++.. ++|.+.|
T Consensus 66 m~~~m~~aDlvIs~aG~~Ti~E~l~~----g~P~I~i 98 (167)
T PF04101_consen 66 MAELMAAADLVISHAGAGTIAEALAL----GKPAIVI 98 (167)
T ss_dssp HHHHHHHHSEEEECS-CHHHHHHHHC----T--EEEE
T ss_pred HHHHHHHcCEEEeCCCccHHHHHHHc----CCCeecc
Confidence 34455678999999999999998876 7788765
No 161
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=49.94 E-value=25 Score=32.86 Aligned_cols=36 Identities=19% Similarity=0.183 Sum_probs=26.0
Q ss_pred CCccEEEEEcCchhHHH-----HHHHcCCCCCcEEEEeCCC
Q psy5950 241 DKIDFIICLGGDGTLLY-----ASLLFQQSVPPVMAFHLGS 276 (511)
Q Consensus 241 ~~~DlVIvLGGDGTlL~-----Aar~~~~~~~PILGINlG~ 276 (511)
.++|.||.-||.+.... ..+.+....+|+|||-+|.
T Consensus 40 ~~~dgvIl~Gg~~~~~~~~~~~~~~~~~~~~~PilGIC~G~ 80 (181)
T cd01742 40 KNPKGIILSGGPSSVYEEDAPRVDPEIFELGVPVLGICYGM 80 (181)
T ss_pred cCCCEEEECCCcccccccccchhhHHHHhcCCCEEEEcHHH
Confidence 46899999999765422 2344445689999999883
No 162
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=49.11 E-value=44 Score=36.06 Aligned_cols=41 Identities=20% Similarity=0.293 Sum_probs=32.5
Q ss_pred CCccEEEEEcCchhHHHHHHHcCC-CCCcEEEEeC--CCcccccc
Q psy5950 241 DKIDFIICLGGDGTLLYASLLFQQ-SVPPVMAFHL--GSLGFLTP 282 (511)
Q Consensus 241 ~~~DlVIvLGGDGTlL~Aar~~~~-~~~PILGINl--G~LGFLt~ 282 (511)
.++|.||-+|| |+.+-+++.+.. .+.|++.|-. -+=|+-++
T Consensus 83 ~~~d~vIGVGG-Gk~iD~aK~~A~~~~~pfIsvPT~AS~Da~~Sp 126 (360)
T COG0371 83 DGADVVIGVGG-GKTIDTAKAAAYRLGLPFISVPTIASTDAITSP 126 (360)
T ss_pred cCCCEEEEecC-cHHHHHHHHHHHHcCCCEEEecCccccccccCC
Confidence 56899999999 999999998764 6889998764 34455555
No 163
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=48.25 E-value=30 Score=37.29 Aligned_cols=59 Identities=27% Similarity=0.345 Sum_probs=44.2
Q ss_pred CCCCCCccEEEEEcCchhHHHHHHHcCCCCCcEEEEeCC-------------Ccccccc---CCcccHHHHHHHHHcCC
Q psy5950 237 DDLTDKIDFIICLGGDGTLLYASLLFQQSVPPVMAFHLG-------------SLGFLTP---FEFENFEDQVTNVLEGH 299 (511)
Q Consensus 237 ~~~~~~~DlVIvLGGDGTlL~Aar~~~~~~~PILGINlG-------------~LGFLt~---~~~~~~~~~L~~il~G~ 299 (511)
..+.+.+|++|+-||=||+..+.+. ++|++.+-.+ ..|.... ...+.+.++|++++...
T Consensus 295 ~~~l~~ad~vI~hGG~gtt~eaL~~----gvP~vv~P~~~DQ~~nA~rve~~G~G~~l~~~~l~~~~l~~av~~vL~~~ 369 (406)
T COG1819 295 LELLPRADAVIHHGGAGTTSEALYA----GVPLVVIPDGADQPLNAERVEELGAGIALPFEELTEERLRAAVNEVLADD 369 (406)
T ss_pred HHHhhhcCEEEecCCcchHHHHHHc----CCCEEEecCCcchhHHHHHHHHcCCceecCcccCCHHHHHHHHHHHhcCH
Confidence 3456789999999999999998866 8899987554 3454433 45667778888887754
No 164
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=47.70 E-value=70 Score=32.78 Aligned_cols=41 Identities=29% Similarity=0.468 Sum_probs=28.6
Q ss_pred CCCccEEEEEcC----c----hh---------HHHHHHHcCCCCCcEEEEeCC-----Ccccc
Q psy5950 240 TDKIDFIICLGG----D----GT---------LLYASLLFQQSVPPVMAFHLG-----SLGFL 280 (511)
Q Consensus 240 ~~~~DlVIvLGG----D----GT---------lL~Aar~~~~~~~PILGINlG-----~LGFL 280 (511)
.+++|.||+.|| | |. +..+.+.+...+.||+||-.| .+|.|
T Consensus 46 l~~~DgLvipGGfs~gD~l~~g~~~~~~l~~~l~~~Ik~f~~~gkpVLGICnG~QlLa~~GlL 108 (261)
T PRK01175 46 VSDYDCLVIPGGFSAGDYIRAGAIFAARLKAVLRKDIEEFIDEGYPIIGICNGFQVLVELGLL 108 (261)
T ss_pred hhhCCEEEECCCCCcccccccchhhHHHHHHHHHHHHHHHHHCCCeEEEECHHHHHHHHCCCC
Confidence 357899999999 3 11 124455666678999999877 35666
No 165
>PLN02327 CTP synthase
Probab=47.04 E-value=47 Score=37.78 Aligned_cols=35 Identities=26% Similarity=0.375 Sum_probs=26.6
Q ss_pred CCCccEEEEEcCc------hhHHHHHHHcCCCCCcEEEEeCC
Q psy5950 240 TDKIDFIICLGGD------GTLLYASLLFQQSVPPVMAFHLG 275 (511)
Q Consensus 240 ~~~~DlVIvLGGD------GTlL~Aar~~~~~~~PILGINlG 275 (511)
..++|.||+-||= |-+ .+++.....++|+|||-+|
T Consensus 360 L~~~DGIvvpGGfG~~~~~G~i-~ai~~are~~iP~LGIClG 400 (557)
T PLN02327 360 LKGADGILVPGGFGDRGVEGKI-LAAKYARENKVPYLGICLG 400 (557)
T ss_pred hccCCEEEeCCCCCCcccccHH-HHHHHHHHcCCCEEEEcHH
Confidence 4678999988883 553 4566666679999999988
No 166
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=47.01 E-value=2.7e+02 Score=26.83 Aligned_cols=102 Identities=15% Similarity=0.142 Sum_probs=54.8
Q ss_pred EEEEEecCC----ChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEE
Q psy5950 173 TVLVIKKVR----DVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIIC 248 (511)
Q Consensus 173 ~VlII~K~~----~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIv 248 (511)
+||||.+.. ..++......|.+.|++..+++|.+..+... + .++..+++|+||.
T Consensus 1 kvLi~~g~~~~~~h~~~~~~~~~l~~ll~~~~~~~v~~~~~~~~---------~-------------~~~~L~~~Dvvv~ 58 (217)
T PF06283_consen 1 KVLIFSGGWSGYRHDSIPAAKKALAQLLEESEGFEVTVTEDPDD---------L-------------TPENLKGYDVVVF 58 (217)
T ss_dssp EEEEEES-SHHHCSHHHHHHHHHHHHHHHHTTCEEEEECCSGGC---------T-------------SHHCHCT-SEEEE
T ss_pred CEEEEeCCcCCccCccHHHHHHHHHHHhccCCCEEEEEEeCccc---------C-------------ChhHhcCCCEEEE
Confidence 689999862 3333444455555555466777765543111 0 0112357899999
Q ss_pred EcCchh-----HHHHHHHcCCCCCcEEEEe-CCCccccccCCcccHHHHHHHHHcCCcEEE
Q psy5950 249 LGGDGT-----LLYASLLFQQSVPPVMAFH-LGSLGFLTPFEFENFEDQVTNVLEGHAALT 303 (511)
Q Consensus 249 LGGDGT-----lL~Aar~~~~~~~PILGIN-lG~LGFLt~~~~~~~~~~L~~il~G~~~ie 303 (511)
....|. -..+.+.+...+.+++|++ .+...|- +.++ ..+++-|.+.-.
T Consensus 59 ~~~~~~~l~~~~~~al~~~v~~Ggglv~lH~~~~~~~~------~~~~-~~~l~Gg~f~~h 112 (217)
T PF06283_consen 59 YNTGGDELTDEQRAALRDYVENGGGLVGLHGAATDSFP------DWPE-YNELLGGYFKGH 112 (217)
T ss_dssp E-SSCCGS-HHHHHHHHHHHHTT-EEEEEGGGGGCCHT------T-HH-HHHHHS--SEEE
T ss_pred ECCCCCcCCHHHHHHHHHHHHcCCCEEEEcccccccch------hHHH-HHHeeCccccCC
Confidence 888774 2344444556789999999 4444552 2333 334777877655
No 167
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=46.93 E-value=11 Score=35.43 Aligned_cols=37 Identities=27% Similarity=0.314 Sum_probs=28.4
Q ss_pred CCCccEEEEEcCc------hhHHHHHHHcCCCCCcEEEEeCCC
Q psy5950 240 TDKIDFIICLGGD------GTLLYASLLFQQSVPPVMAFHLGS 276 (511)
Q Consensus 240 ~~~~DlVIvLGGD------GTlL~Aar~~~~~~~PILGINlG~ 276 (511)
..++|.||+.||= +..+.+.+.+....+|||||-+|.
T Consensus 40 ~~~~d~iii~Gg~~~~~d~~~~~~~i~~~~~~~~PilGIC~G~ 82 (192)
T PF00117_consen 40 LDDYDGIIISGGPGSPYDIEGLIELIREARERKIPILGICLGH 82 (192)
T ss_dssp TTTSSEEEEECESSSTTSHHHHHHHHHHHHHTTSEEEEETHHH
T ss_pred hcCCCEEEECCcCCccccccccccccccccccceEEEEEeehh
Confidence 4578999999994 455566666666789999999884
No 168
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=46.81 E-value=63 Score=32.51 Aligned_cols=58 Identities=14% Similarity=0.135 Sum_probs=39.7
Q ss_pred CCCCCCccEEEEEcCchhHHHHHHHcCCCCCcEEEEeCC----------------CccccccC---CcccHHHHHHHHHc
Q psy5950 237 DDLTDKIDFIICLGGDGTLLYASLLFQQSVPPVMAFHLG----------------SLGFLTPF---EFENFEDQVTNVLE 297 (511)
Q Consensus 237 ~~~~~~~DlVIvLGGDGTlL~Aar~~~~~~~PILGINlG----------------~LGFLt~~---~~~~~~~~L~~il~ 297 (511)
.++...+|++|+-+|=.|++.|+.. ++|++.++.+ ..|++.+. +++++.++|+++++
T Consensus 245 ~~~l~~ad~~v~~~g~~~l~Ea~~~----g~Pvv~~~~~~~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ll~ 320 (348)
T TIGR01133 245 AAAYAAADLVISRAGASTVAELAAA----GVPAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLKLLL 320 (348)
T ss_pred HHHHHhCCEEEECCChhHHHHHHHc----CCCEEEeeCCCCccchhhHHHHHHHCCCEEEEecccCCHHHHHHHHHHHHc
Confidence 3445678999999884467776644 7899987642 34777543 36777778887775
Q ss_pred C
Q psy5950 298 G 298 (511)
Q Consensus 298 G 298 (511)
.
T Consensus 321 ~ 321 (348)
T TIGR01133 321 D 321 (348)
T ss_pred C
Confidence 3
No 169
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=46.76 E-value=1.5e+02 Score=24.48 Aligned_cols=88 Identities=19% Similarity=0.155 Sum_probs=53.5
Q ss_pred cEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEEcC
Q psy5950 172 LTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICLGG 251 (511)
Q Consensus 172 ~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvLGG 251 (511)
++|+++.-.+-....-...++.+++.+. ++.+.++..... . .++..+++|+||+---
T Consensus 1 ~~ilivC~~G~~tS~~l~~~i~~~~~~~-~i~~~v~~~~~~------------------~----~~~~~~~~Dliist~~ 57 (89)
T cd05566 1 KKILVACGTGVATSTVVASKVKELLKEN-GIDVKVEQCKIA------------------E----VPSLLDDADLIVSTTK 57 (89)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHHC-CCceEEEEecHH------------------H----hhcccCCCcEEEEcCC
Confidence 4688888765555555667888888643 444433321110 0 0112357898887432
Q ss_pred chhHHHHHHHcCCCCCcEEEEeCCCccccccCCcccHHHHHHHH
Q psy5950 252 DGTLLYASLLFQQSVPPVMAFHLGSLGFLTPFEFENFEDQVTNV 295 (511)
Q Consensus 252 DGTlL~Aar~~~~~~~PILGINlG~LGFLt~~~~~~~~~~L~~i 295 (511)
.-.....|++=|+ .||++.+.+++.+.|+.+
T Consensus 58 ---------~~~~~~~p~i~v~----~~l~~~d~~~i~~~I~~~ 88 (89)
T cd05566 58 ---------VPEDYGIPVINGL----PFLTGIGEDKVYEEILEA 88 (89)
T ss_pred ---------cCCCCCCCEEEEe----eccccCChHHHHHHHHHh
Confidence 1112367888777 699999988888888765
No 170
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=46.45 E-value=59 Score=32.92 Aligned_cols=110 Identities=15% Similarity=0.128 Sum_probs=53.1
Q ss_pred CcEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEEc
Q psy5950 171 PLTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICLG 250 (511)
Q Consensus 171 p~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvLG 250 (511)
.++|+|+..+..+.......++.+...+ .++++..- .+... ..+... .+.+.++.|.+ .+.
T Consensus 131 ~k~igvl~~~~~~~~~~~~~~~~~~a~~-~g~~l~~~-~v~~~---------~~~~~~-------~~~l~~~~da~-~~~ 191 (294)
T PF04392_consen 131 AKRIGVLYDPSEPNSVAQIEQLRKAAKK-LGIELVEI-PVPSS---------EDLEQA-------LEALAEKVDAL-YLL 191 (294)
T ss_dssp --EEEEEEETT-HHHHHHHHHHHHHHHH-TT-EEEEE-EESSG---------GGHHHH-------HHHHCTT-SEE-EE-
T ss_pred CCEEEEEecCCCccHHHHHHHHHHHHHH-cCCEEEEE-ecCcH---------hHHHHH-------HHHhhccCCEE-EEE
Confidence 5899999987766556667777777765 45554311 11110 001111 12234567855 456
Q ss_pred CchhHHHH----HHHcCCCCCcEEEEeCC--CccccccCCcc------cHHHHHHHHHcCC
Q psy5950 251 GDGTLLYA----SLLFQQSVPPVMAFHLG--SLGFLTPFEFE------NFEDQVTNVLEGH 299 (511)
Q Consensus 251 GDGTlL~A----ar~~~~~~~PILGINlG--~LGFLt~~~~~------~~~~~L~~il~G~ 299 (511)
.|+++... .+......+|++|.+-. .-|.|..+..+ ..-+...++++|.
T Consensus 192 ~~~~~~~~~~~i~~~~~~~~iPv~~~~~~~v~~Gal~~~~~~~~~~G~~Aa~~a~~IL~G~ 252 (294)
T PF04392_consen 192 PDNLVDSNFEAILQLANEAKIPVFGSSDFYVKAGALGGYSVDYYEQGRQAAEMAVRILKGE 252 (294)
T ss_dssp S-HHHHHTHHHHHHHCCCTT--EEESSHHHHCTT-SEEEE--HHHHHHHHHHHHHHHCTT-
T ss_pred CCcchHhHHHHHHHHHHhcCCCEEECCHHHhcCCcEEEEccCHHHHHHHHHHHHHHHHCCC
Confidence 78887754 33445678999997641 22555444332 2234566788875
No 171
>KOG1115|consensus
Probab=46.07 E-value=17 Score=39.86 Aligned_cols=20 Identities=30% Similarity=0.358 Sum_probs=15.8
Q ss_pred CCccEEEEEcCchhHHHHHH
Q psy5950 241 DKIDFIICLGGDGTLLYASL 260 (511)
Q Consensus 241 ~~~DlVIvLGGDGTlL~Aar 260 (511)
..+|-||++||||-|-...+
T Consensus 216 ~~yDGiv~VGGDG~FnEiL~ 235 (516)
T KOG1115|consen 216 HTYDGIVAVGGDGFFNEILN 235 (516)
T ss_pred hhcccEEEecCchhHHHHHh
Confidence 46899999999998755544
No 172
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=45.60 E-value=32 Score=35.22 Aligned_cols=36 Identities=25% Similarity=0.266 Sum_probs=22.0
Q ss_pred CCCccEEEEEcCchhH-----HHHHH----Hc---CC--CCCcEEEEeCC
Q psy5950 240 TDKIDFIICLGGDGTL-----LYASL----LF---QQ--SVPPVMAFHLG 275 (511)
Q Consensus 240 ~~~~DlVIvLGGDGTl-----L~Aar----~~---~~--~~~PILGINlG 275 (511)
.+.+|-||+.||.-.+ +.+++ .+ .+ ...||+||-+|
T Consensus 52 l~~~dG~l~~Gg~~~~~~~~~~~~~~~l~~~a~~~~~~g~~~Pv~GiClG 101 (273)
T cd01747 52 FKSINGILFPGGAVDIDTSGYARTAKIIYNLALERNDAGDYFPVWGTCLG 101 (273)
T ss_pred HhhCCEEEECCCCCcCCccccchHHHHHHHHHHHhhhcCCCCcEEEEcHH
Confidence 4567889999995222 22222 21 11 13899999987
No 173
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=42.13 E-value=32 Score=36.88 Aligned_cols=35 Identities=17% Similarity=0.224 Sum_probs=25.8
Q ss_pred CccEEEEEcCchh------HHHHHHHcCCCCCcEEEEeCCC
Q psy5950 242 KIDFIICLGGDGT------LLYASLLFQQSVPPVMAFHLGS 276 (511)
Q Consensus 242 ~~DlVIvLGGDGT------lL~Aar~~~~~~~PILGINlG~ 276 (511)
++|.||.-||.|. .+..++.+...++|||||-+|.
T Consensus 218 ~~DGIvLSgGPgdp~~~~~~~~~i~~~~~~~~PilGIClG~ 258 (360)
T PRK12564 218 NPDGVFLSNGPGDPAALDYAIEMIRELLEKKIPIFGICLGH 258 (360)
T ss_pred CCCEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEECHHH
Confidence 5799999999765 3344555555679999999884
No 174
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=41.89 E-value=1e+02 Score=30.54 Aligned_cols=36 Identities=19% Similarity=0.228 Sum_probs=25.6
Q ss_pred CCccEEEEEcCchh--------------HHHHHHHcCCCCCcEEEEeCCC
Q psy5950 241 DKIDFIICLGGDGT--------------LLYASLLFQQSVPPVMAFHLGS 276 (511)
Q Consensus 241 ~~~DlVIvLGGDGT--------------lL~Aar~~~~~~~PILGINlG~ 276 (511)
+++|.||+-||-.. ++...+.+...+.||+||-.|.
T Consensus 39 ~~~d~lilpGG~~~~d~~~~~~~~~~~~~~~~l~~~~~~g~pvlgIC~G~ 88 (227)
T TIGR01737 39 PDYDGVVLPGGFSYGDYLRAGAIAAASPIMQEVREFAEKGVPVLGICNGF 88 (227)
T ss_pred CCCCEEEECCCCcccccccccchhcchHHHHHHHHHHHcCCEEEEECHHH
Confidence 35899999998421 4444555556789999999873
No 175
>PF00885 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase) catalyses the biosynthesis of riboflavin according to the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine. The biosynthesis of one riboflavin molecule requires one molecule of GTP and two molecules of ribulose 5-phosphate as substrates. The final step in the biosynthesis of the vitamin involves the dismutation of 6,7-dimethyl-8-ribityllumazine catalyzed by riboflavin synthase. The second product, 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, is recycled in the biosynthetic pathway by 6,7-dimethyl-8-ribityllumazine synthase []. N-[2,4-dioxo-6-d-ribitylamino-1,2,3,4-tetrahydropyrimidin-5-yl]oxalamic acid derivatives inhibit riboflavin synthase []. This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex; PDB: 2O6H_D 1C41_C 2OBX_H 1VSX_H 1VSW_3 3JV8_C 3MK3_r 3NQ4_G 2A58_A 2A57_D ....
Probab=41.81 E-value=99 Score=28.96 Aligned_cols=99 Identities=19% Similarity=0.192 Sum_probs=54.1
Q ss_pred CcEEEEEecCCChhhHHH-HHHHHHHHHhcC----CeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccE
Q psy5950 171 PLTVLVIKKVRDVSVLQP-FVKLVKWLIQEK----SMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDF 245 (511)
Q Consensus 171 p~~VlII~K~~~~~~~~~-~~el~~~L~~~~----~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~Dl 245 (511)
..+|+||.-..++++... +....+.|.+.+ .++++-=+..+|-|... +++.. ..++|.
T Consensus 3 ~~ri~IV~s~~n~~i~~~ll~~a~~~l~~~g~~~~~i~~~~VPGa~ElP~a~---------~~l~~--------~~~~Da 65 (144)
T PF00885_consen 3 GLRIAIVVSRFNEEITDRLLEGALEELKRHGVAEENIEVIRVPGAFELPLAA---------KRLAE--------SGRYDA 65 (144)
T ss_dssp TEEEEEEEESTTHHHHHHHHHHHHHHHHHTTTTGGCEEEEEESSGGGHHHHH---------HHHHH--------CSTESE
T ss_pred CCEEEEEEEeccHHHHHHHHHHHHHHHHHcCCCccceEEEEcCCHHHHHHHH---------HHHhc--------ccCccE
Confidence 347888876556655554 456777887654 23443333344433211 11211 246999
Q ss_pred EEEEc--Cc-hhH----------HHHHHHcCCCCCcEEEEeCCCccccccCCcccHHHHHHHH
Q psy5950 246 IICLG--GD-GTL----------LYASLLFQQSVPPVMAFHLGSLGFLTPFEFENFEDQVTNV 295 (511)
Q Consensus 246 VIvLG--GD-GTl----------L~Aar~~~~~~~PILGINlG~LGFLt~~~~~~~~~~L~~i 295 (511)
||+|| =. +|. -...+.-..+++||. .|.|+. ++.+++++++
T Consensus 66 vi~lG~VI~G~T~H~~~v~~~v~~gl~~lsl~~~~PV~------~gvlt~---~~~eqa~~R~ 119 (144)
T PF00885_consen 66 VIALGCVIRGETDHFEYVANAVSRGLMDLSLEYGIPVI------FGVLTP---DTEEQALERA 119 (144)
T ss_dssp EEEEEEEE--SSTHHHHHHHHHHHHHHHHHHHHTSEEE------EEEEEE---SSHHHHHHHC
T ss_pred EEEeccccCCCchHHHHHHHHHHHHHHHHhccCCccEE------EEecCC---CCHHHHHHHh
Confidence 99999 12 221 111222234688998 578887 4566666654
No 176
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=41.26 E-value=34 Score=35.51 Aligned_cols=59 Identities=19% Similarity=0.176 Sum_probs=41.8
Q ss_pred CCCCCCCccEEEEEcCchhHHHHHHHcCCCCCcEEEEeCC-------------Cccccc---cCCcccHHHHHHHHHcC
Q psy5950 236 KDDLTDKIDFIICLGGDGTLLYASLLFQQSVPPVMAFHLG-------------SLGFLT---PFEFENFEDQVTNVLEG 298 (511)
Q Consensus 236 ~~~~~~~~DlVIvLGGDGTlL~Aar~~~~~~~PILGINlG-------------~LGFLt---~~~~~~~~~~L~~il~G 298 (511)
...+...+|++|+-||=||+..+... ++|.+.+-.+ ..|... .++.+++.++|+++++.
T Consensus 298 ~~~ll~~~d~~I~hgG~~t~~eal~~----GvP~v~~P~~~dQ~~~a~~~~~~G~g~~l~~~~~~~~~l~~al~~~l~~ 372 (401)
T cd03784 298 HDWLLPRCAAVVHHGGAGTTAAALRA----GVPQLVVPFFGDQPFWAARVAELGAGPALDPRELTAERLAAALRRLLDP 372 (401)
T ss_pred HHHHhhhhheeeecCCchhHHHHHHc----CCCEEeeCCCCCcHHHHHHHHHCCCCCCCCcccCCHHHHHHHHHHHhCH
Confidence 34556779999999999999998865 8899888442 123332 23566777788877764
No 177
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=41.21 E-value=64 Score=37.86 Aligned_cols=36 Identities=22% Similarity=0.218 Sum_probs=24.7
Q ss_pred CCccEEEEEcCchhH-----HHHHHHcCC----CCCcEEEEeCCC
Q psy5950 241 DKIDFIICLGGDGTL-----LYASLLFQQ----SVPPVMAFHLGS 276 (511)
Q Consensus 241 ~~~DlVIvLGGDGTl-----L~Aar~~~~----~~~PILGINlG~ 276 (511)
.++|.||+.||-|.- ...+..+.. ..+|||||-+|.
T Consensus 52 ~~~D~VVIspGPG~p~~~~~~~i~~~i~~~~~~~~iPvLGIClG~ 96 (742)
T TIGR01823 52 PLFDAIVVGPGPGNPNNAQDMGIISELWELANLDEVPVLGICLGF 96 (742)
T ss_pred cCCCEEEECCCCCCccchhhhHHHHHHHHhcccCCCcEEEEchhh
Confidence 467999999999974 222222222 359999999984
No 178
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=39.50 E-value=2.2e+02 Score=25.21 Aligned_cols=87 Identities=9% Similarity=0.028 Sum_probs=49.6
Q ss_pred cEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEE-EcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEEc
Q psy5950 172 LTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVY-VEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICLG 250 (511)
Q Consensus 172 ~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~-ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvLG 250 (511)
|+|.||.-..++. ....+++++|.+ .+..|| |..+..+.. . ...|. ...+....+|++++.-
T Consensus 1 ksiAVvGaS~~~~--~~g~~v~~~l~~-~G~~v~~Vnp~~~~i~---G----------~~~y~-sl~e~p~~iDlavv~~ 63 (116)
T PF13380_consen 1 KSIAVVGASDNPG--KFGYRVLRNLKA-AGYEVYPVNPKGGEIL---G----------IKCYP-SLAEIPEPIDLAVVCV 63 (116)
T ss_dssp -EEEEET--SSTT--SHHHHHHHHHHH-TT-EEEEESTTCSEET---T----------EE-BS-SGGGCSST-SEEEE-S
T ss_pred CEEEEEcccCCCC--ChHHHHHHHHHh-CCCEEEEECCCceEEC---c----------EEeec-cccCCCCCCCEEEEEc
Confidence 5789999765554 346789999987 454444 443322210 0 01121 1233467899999999
Q ss_pred CchhHHHHHHHcCCCCCcEEEEeCC
Q psy5950 251 GDGTLLYASLLFQQSVPPVMAFHLG 275 (511)
Q Consensus 251 GDGTlL~Aar~~~~~~~PILGINlG 275 (511)
.-..+..+.+.+...++.-+=|..|
T Consensus 64 ~~~~~~~~v~~~~~~g~~~v~~~~g 88 (116)
T PF13380_consen 64 PPDKVPEIVDEAAALGVKAVWLQPG 88 (116)
T ss_dssp -HHHHHHHHHHHHHHT-SEEEE-TT
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 9999999888887667777777777
No 179
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=39.07 E-value=1.2e+02 Score=28.17 Aligned_cols=36 Identities=22% Similarity=0.068 Sum_probs=29.1
Q ss_pred CCccEEEEEcCchhHHHHHHHcCCCCCcEEEEeCCC
Q psy5950 241 DKIDFIICLGGDGTLLYASLLFQQSVPPVMAFHLGS 276 (511)
Q Consensus 241 ~~~DlVIvLGGDGTlL~Aar~~~~~~~PILGINlG~ 276 (511)
.++|.+|+.+.+...+.++..+....+|++.++...
T Consensus 54 ~~~d~ii~~~~~~~~~~~~~~l~~~~ip~v~~~~~~ 89 (264)
T cd01537 54 RGVDGIIIAPSDLTAPTIVKLARKAGIPVVLVDRDI 89 (264)
T ss_pred cCCCEEEEecCCCcchhHHHHhhhcCCCEEEeccCC
Confidence 468999999998777666677777889999998763
No 180
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=39.00 E-value=39 Score=36.27 Aligned_cols=34 Identities=21% Similarity=0.247 Sum_probs=24.9
Q ss_pred CccEEEEEcCchhH------HHHHHHcCCCCCcEEEEeCCC
Q psy5950 242 KIDFIICLGGDGTL------LYASLLFQQSVPPVMAFHLGS 276 (511)
Q Consensus 242 ~~DlVIvLGGDGTl------L~Aar~~~~~~~PILGINlG~ 276 (511)
.+|.||.-||-|.. +..++.+.. .+|||||-+|.
T Consensus 214 ~pDGIiLSgGPgdp~~~~~~i~~i~~~~~-~~PILGIClG~ 253 (358)
T TIGR01368 214 NPDGIFLSNGPGDPAAVEPAIETIRKLLE-KIPIFGICLGH 253 (358)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHHc-CCCEEEECHHH
Confidence 35999999996553 444555555 89999999884
No 181
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=37.60 E-value=2.2e+02 Score=27.94 Aligned_cols=35 Identities=26% Similarity=0.115 Sum_probs=22.3
Q ss_pred CccEEEEEcCc----------hhHHHHHHHcCCCCCcEEEEeCCC
Q psy5950 242 KIDFIICLGGD----------GTLLYASLLFQQSVPPVMAFHLGS 276 (511)
Q Consensus 242 ~~DlVIvLGGD----------GTlL~Aar~~~~~~~PILGINlG~ 276 (511)
++|.+|+.||= +........+....+|||||=+|.
T Consensus 45 ~~~giIlsGgp~sv~~~~~w~~~~~~~i~~~~~p~~pvLGIC~G~ 89 (198)
T COG0518 45 SPDGIIISGGPMSVYDEDPWLPREKDLIKDAGVPGKPVLGICLGH 89 (198)
T ss_pred CCCEEEEcCCCCCCccccccchhHHHHHHHhCCCCCCEEEEChhH
Confidence 34999999994 233333333333445699999995
No 182
>cd08196 DHQS-like1 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=37.24 E-value=85 Score=33.33 Aligned_cols=29 Identities=10% Similarity=0.163 Sum_probs=21.3
Q ss_pred ccEEEEEcCchhHHHHHHHcC---CCCCcEEEE
Q psy5950 243 IDFIICLGGDGTLLYASLLFQ---QSVPPVMAF 272 (511)
Q Consensus 243 ~DlVIvLGGDGTlL~Aar~~~---~~~~PILGI 272 (511)
-|+||.+|| |.++.++..+. ..++|.+-|
T Consensus 77 ~d~iIaiGG-Gsv~D~ak~vA~~~~rgi~~i~i 108 (346)
T cd08196 77 NTHLVAIGG-GIIQDVTTFVASIYMRGVSWSFV 108 (346)
T ss_pred CcEEEEECC-hHHHHHHHHHHHHHHcCCCeEEe
Confidence 489999999 89999888764 334555443
No 183
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=36.83 E-value=70 Score=32.38 Aligned_cols=83 Identities=14% Similarity=0.131 Sum_probs=42.0
Q ss_pred EEEEEecCCChhhHHHHHHHHHHHHhcCCeE--EEEc-CCccccccccCCCCccccccccccccCCCCCCCCCccEEEEE
Q psy5950 173 TVLVIKKVRDVSVLQPFVKLVKWLIQEKSML--VYVE-QSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICL 249 (511)
Q Consensus 173 ~VlII~K~~~~~~~~~~~el~~~L~~~~~~~--V~ve-~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvL 249 (511)
+|+|+.=...+...+...-+.+-|.+.+... +.++ .+...+. ..+.+.+..+ ...++|+||++
T Consensus 1 ~v~i~~~~~~~~~~~~~~gf~~~L~~~g~~~~~~~~~~~~a~~d~--------~~~~~~~~~l------~~~~~DlIi~~ 66 (294)
T PF04392_consen 1 KVGILQFISHPALDDIVRGFKDGLKELGYDEKNVEIEYKNAEGDP--------EKLRQIARKL------KAQKPDLIIAI 66 (294)
T ss_dssp EEEEEESS--HHHHHHHHHHHHHHHHTT--CCCEEEEEEE-TT-H--------HHHHHHHHHH------CCTS-SEEEEE
T ss_pred CeEEEEEeccHHHHHHHHHHHHHHHHcCCccccEEEEEecCCCCH--------HHHHHHHHHH------hcCCCCEEEEe
Confidence 5888887778888888888888897654222 1111 1111111 1111111111 13579999999
Q ss_pred cCchhHHHHHHHcCCCCCcEEE
Q psy5950 250 GGDGTLLYASLLFQQSVPPVMA 271 (511)
Q Consensus 250 GGDGTlL~Aar~~~~~~~PILG 271 (511)
|.+-+..- ++.+.+. +||+-
T Consensus 67 gt~aa~~~-~~~~~~~-iPVVf 86 (294)
T PF04392_consen 67 GTPAAQAL-AKHLKDD-IPVVF 86 (294)
T ss_dssp SHHHHHHH-HHH-SS--S-EEE
T ss_pred CcHHHHHH-HHhcCCC-cEEEE
Confidence 99877654 4444433 88863
No 184
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=36.28 E-value=94 Score=33.35 Aligned_cols=34 Identities=26% Similarity=0.298 Sum_probs=25.0
Q ss_pred CccEEEEEcCchhH------HHHHHHcCCCCCcEEEEeCCC
Q psy5950 242 KIDFIICLGGDGTL------LYASLLFQQSVPPVMAFHLGS 276 (511)
Q Consensus 242 ~~DlVIvLGGDGTl------L~Aar~~~~~~~PILGINlG~ 276 (511)
++|.||.-||-|.. +...+.+... +|||||-+|+
T Consensus 208 ~~DGIiLsgGPgdp~~~~~~~~~i~~~~~~-~PvlGIClG~ 247 (354)
T PRK12838 208 NPDGIVLSNGPGDPKELQPYLPEIKKLISS-YPILGICLGH 247 (354)
T ss_pred CCCEEEEcCCCCChHHhHHHHHHHHHHhcC-CCEEEECHHH
Confidence 68999999998863 3444444444 8999999884
No 185
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=36.25 E-value=60 Score=32.01 Aligned_cols=37 Identities=16% Similarity=0.291 Sum_probs=23.4
Q ss_pred CccEEEEEcCchhH------------HHHHHHcCCCCCcEEEEeCCCccc
Q psy5950 242 KIDFIICLGGDGTL------------LYASLLFQQSVPPVMAFHLGSLGF 279 (511)
Q Consensus 242 ~~DlVIvLGGDGTl------------L~Aar~~~~~~~PILGINlG~LGF 279 (511)
++|.|| ++|-|.+ +...+.+.....|||||=+|.--+
T Consensus 39 ~~d~iI-lPG~g~~~~~~~~l~~~gl~~~i~~~~~~~~pvlGIClG~Qll 87 (210)
T CHL00188 39 QVHALV-LPGVGSFDLAMKKLEKKGLITPIKKWIAEGNPFIGICLGLHLL 87 (210)
T ss_pred hCCEEE-ECCCCchHHHHHHHHHCCHHHHHHHHHHcCCCEEEECHHHHHH
Confidence 478877 6775553 233343334578999999985333
No 186
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=36.09 E-value=1.4e+02 Score=27.29 Aligned_cols=36 Identities=19% Similarity=0.147 Sum_probs=28.6
Q ss_pred CCccEEEEEcCchhHHHHHHHcCCCCCcEEEEeCCC
Q psy5950 241 DKIDFIICLGGDGTLLYASLLFQQSVPPVMAFHLGS 276 (511)
Q Consensus 241 ~~~DlVIvLGGDGTlL~Aar~~~~~~~PILGINlG~ 276 (511)
.++|.||..+.+.+...+...+...++|++.++...
T Consensus 57 ~~~d~ii~~~~~~~~~~~~~~~~~~~ip~v~~~~~~ 92 (269)
T cd01391 57 QGVDGIIGPPSSSSALAVVELAAAAGIPVVSLDATA 92 (269)
T ss_pred cCCCEEEecCCCHHHHHHHHHHHHcCCcEEEecCCC
Confidence 368999999998776656666677789999998754
No 187
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=36.04 E-value=1.4e+02 Score=27.83 Aligned_cols=85 Identities=14% Similarity=-0.082 Sum_probs=49.6
Q ss_pred EEEEecC-CChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEEcCc
Q psy5950 174 VLVIKKV-RDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICLGGD 252 (511)
Q Consensus 174 VlII~K~-~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvLGGD 252 (511)
|+++... .++-.......+.+.+.+. ++.+.+...-. ++.. ... . +. .-+..++|.+|+.+.|
T Consensus 2 i~~v~~~~~~~~~~~~~~g~~~~~~~~-g~~~~~~~~~~-~~~~----~~~-~---~~------~~~~~~~d~iii~~~~ 65 (264)
T cd06267 2 IGVIVPDISNPFFAELLRGIEEAAREA-GYSVLLCNSDE-DPEK----ERE-A---LE------LLLSRRVDGIILAPSR 65 (264)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHc-CCEEEEEcCCC-CHHH----HHH-H---HH------HHHHcCcCEEEEecCC
Confidence 5555543 4555556666777777654 45544332211 1100 000 0 00 1123578999999999
Q ss_pred hhHHHHHHHcCCCCCcEEEEeCC
Q psy5950 253 GTLLYASLLFQQSVPPVMAFHLG 275 (511)
Q Consensus 253 GTlL~Aar~~~~~~~PILGINlG 275 (511)
.+-+. .+.+...++|++.++..
T Consensus 66 ~~~~~-~~~~~~~~ipvv~~~~~ 87 (264)
T cd06267 66 LDDEL-LEELAALGIPVVLVDRP 87 (264)
T ss_pred cchHH-HHHHHHcCCCEEEeccc
Confidence 88877 66666778999999875
No 188
>KOG3349|consensus
Probab=35.78 E-value=28 Score=33.58 Aligned_cols=32 Identities=22% Similarity=0.350 Sum_probs=24.7
Q ss_pred CCCCCccEEEEEcCchhHHHHHHHcCCCCCcEE-EEe
Q psy5950 238 DLTDKIDFIICLGGDGTLLYASLLFQQSVPPVM-AFH 273 (511)
Q Consensus 238 ~~~~~~DlVIvLGGDGTlL~Aar~~~~~~~PIL-GIN 273 (511)
+...++|+||+-+|-||.|.+.++ +.|.+ -||
T Consensus 76 e~I~~AdlVIsHAGaGS~letL~l----~KPlivVvN 108 (170)
T KOG3349|consen 76 EDIRSADLVISHAGAGSCLETLRL----GKPLIVVVN 108 (170)
T ss_pred HHHhhccEEEecCCcchHHHHHHc----CCCEEEEeC
Confidence 334568999999999999999877 55655 445
No 189
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=35.29 E-value=24 Score=33.51 Aligned_cols=34 Identities=24% Similarity=0.191 Sum_probs=24.9
Q ss_pred ccEEEEEcCchhH-----HHHHHHcCCCCCcEEEEeCCC
Q psy5950 243 IDFIICLGGDGTL-----LYASLLFQQSVPPVMAFHLGS 276 (511)
Q Consensus 243 ~DlVIvLGGDGTl-----L~Aar~~~~~~~PILGINlG~ 276 (511)
+|.||..||.+.. ....+.+...++|||||-+|.
T Consensus 42 ~~glii~Gg~~~~~~~~~~~~i~~~~~~~~PilGIC~G~ 80 (188)
T TIGR00888 42 PKGIILSGGPSSVYAENAPRADEKIFELGVPVLGICYGM 80 (188)
T ss_pred CCEEEECCCCCCcCcCCchHHHHHHHhCCCCEEEECHHH
Confidence 5689999997652 344555555689999999883
No 190
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=34.59 E-value=1.1e+02 Score=29.17 Aligned_cols=34 Identities=24% Similarity=0.239 Sum_probs=24.3
Q ss_pred CccEEEEEcCchhH------HHHHHHcCCCCCcEEEEeCCC
Q psy5950 242 KIDFIICLGGDGTL------LYASLLFQQSVPPVMAFHLGS 276 (511)
Q Consensus 242 ~~DlVIvLGGDGTl------L~Aar~~~~~~~PILGINlG~ 276 (511)
++|.||.-||=|+. +...+.+ ...+|||||-+|.
T Consensus 43 ~~d~iils~GPg~p~~~~~~~~~~~~~-~~~~PiLGIClG~ 82 (187)
T PRK08007 43 KPQKIVISPGPCTPDEAGISLDVIRHY-AGRLPILGVCLGH 82 (187)
T ss_pred CCCEEEEcCCCCChHHCCccHHHHHHh-cCCCCEEEECHHH
Confidence 57889999997554 3344443 3578999999884
No 191
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=34.30 E-value=1.5e+02 Score=28.74 Aligned_cols=56 Identities=21% Similarity=0.243 Sum_probs=38.5
Q ss_pred CCCCccEEEEEcCchh---------HHHHHHHcCCCCCcEEEEeCC---------CccccccC-CcccHHHHHHHHHcC
Q psy5950 239 LTDKIDFIICLGGDGT---------LLYASLLFQQSVPPVMAFHLG---------SLGFLTPF-EFENFEDQVTNVLEG 298 (511)
Q Consensus 239 ~~~~~DlVIvLGGDGT---------lL~Aar~~~~~~~PILGINlG---------~LGFLt~~-~~~~~~~~L~~il~G 298 (511)
+...+|++|.....++ ++.|+. .+.||++.+.| ..|++.+. +.+++.++|.+++..
T Consensus 291 ~~~~~di~i~~~~~~~~~~~~~p~~~~Ea~~----~G~pvi~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~ 365 (394)
T cd03794 291 LLAAADVGLVPLKPGPAFEGVSPSKLFEYMA----AGKPVLASVDGESAELVEEAGAGLVVPPGDPEALAAAILELLDD 365 (394)
T ss_pred HHHhhCeeEEeccCcccccccCchHHHHHHH----CCCcEEEecCCCchhhhccCCcceEeCCCCHHHHHHHHHHHHhC
Confidence 3457899988766554 355443 37899987664 35777654 678888888888754
No 192
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=34.07 E-value=37 Score=34.45 Aligned_cols=33 Identities=27% Similarity=0.320 Sum_probs=26.1
Q ss_pred CCCCCCccEEEEEcCchhHHHHHHHcCCCCCcEEEEeC
Q psy5950 237 DDLTDKIDFIICLGGDGTLLYASLLFQQSVPPVMAFHL 274 (511)
Q Consensus 237 ~~~~~~~DlVIvLGGDGTlL~Aar~~~~~~~PILGINl 274 (511)
.++...+|++|+-|| +|+..++.. ++|.+.|..
T Consensus 236 ~~lm~~aDl~Is~~G-~T~~E~~a~----g~P~i~i~~ 268 (279)
T TIGR03590 236 AELMNEADLAIGAAG-STSWERCCL----GLPSLAICL 268 (279)
T ss_pred HHHHHHCCEEEECCc-hHHHHHHHc----CCCEEEEEe
Confidence 344568899999999 998887755 789987754
No 193
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=34.05 E-value=50 Score=24.58 Aligned_cols=37 Identities=30% Similarity=0.273 Sum_probs=26.0
Q ss_pred CCCccEEEEEcCchhHHHH---------HHHcCCCCCcEEEEeCCC
Q psy5950 240 TDKIDFIICLGGDGTLLYA---------SLLFQQSVPPVMAFHLGS 276 (511)
Q Consensus 240 ~~~~DlVIvLGGDGTlL~A---------ar~~~~~~~PILGINlG~ 276 (511)
..++|.+|+.||.++.... ...+.....|++|+..|.
T Consensus 44 ~~~~~~lii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 89 (92)
T cd03128 44 LDDYDGLILPGGPGTPDDLAWDEALLALLREAAAAGKPVLGICLGA 89 (92)
T ss_pred cccCCEEEECCCCcchhhhccCHHHHHHHHHHHHcCCEEEEEeccc
Confidence 4578999999998777332 333333467999998875
No 194
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=33.33 E-value=2.2e+02 Score=28.20 Aligned_cols=34 Identities=29% Similarity=0.343 Sum_probs=24.2
Q ss_pred CccEEEEEcCc------hhHHHHHHHcCCCCCcEEEEeCCC
Q psy5950 242 KIDFIICLGGD------GTLLYASLLFQQSVPPVMAFHLGS 276 (511)
Q Consensus 242 ~~DlVIvLGGD------GTlL~Aar~~~~~~~PILGINlG~ 276 (511)
++|.||.==|= |-.+.+.+.+ ...+|||||-+|+
T Consensus 45 ~pd~iviSPGPG~P~d~G~~~~~i~~~-~~~~PiLGVCLGH 84 (191)
T COG0512 45 KPDAIVISPGPGTPKDAGISLELIRRF-AGRIPILGVCLGH 84 (191)
T ss_pred CCCEEEEcCCCCChHHcchHHHHHHHh-cCCCCEEEECccH
Confidence 35666655554 4477788887 4468999999996
No 195
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=32.95 E-value=32 Score=33.12 Aligned_cols=36 Identities=33% Similarity=0.344 Sum_probs=26.6
Q ss_pred CCccEEEEEcCchhHHH----------HHHHcCCCCCcEEEEeCCC
Q psy5950 241 DKIDFIICLGGDGTLLY----------ASLLFQQSVPPVMAFHLGS 276 (511)
Q Consensus 241 ~~~DlVIvLGGDGTlL~----------Aar~~~~~~~PILGINlG~ 276 (511)
+++|.||.-||-++... ..+.+...++||+||-.|.
T Consensus 37 ~~~dgiii~GG~~~~~~~~~~~~~~~~~i~~~~~~g~PilGIC~G~ 82 (189)
T PRK13525 37 DEIDGLILPGGESTTMGKLLRDFGLLEPLREFIASGLPVFGTCAGM 82 (189)
T ss_pred ccCCEEEECCCChHHHHHHHHhccHHHHHHHHHHCCCeEEEECHHH
Confidence 45899999999876532 2344555689999999873
No 196
>PRK11249 katE hydroperoxidase II; Provisional
Probab=30.72 E-value=2.3e+02 Score=33.58 Aligned_cols=99 Identities=12% Similarity=0.042 Sum_probs=52.4
Q ss_pred ccCCCCcEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCC-CCCcc
Q psy5950 166 TWYKPPLTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDL-TDKID 244 (511)
Q Consensus 166 ~w~~~p~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~-~~~~D 244 (511)
.|.-.-++|+|+.-.. -....+..+.+.|.+.+....+|-.+... +....... +... .+ .++. ...+|
T Consensus 592 ~~~~~gRKIaILVaDG--~d~~ev~~~~daL~~AGa~V~VVSp~~G~---V~~s~G~~-I~aD-~t----~~~~~Sv~FD 660 (752)
T PRK11249 592 DGDIKGRKVAILLNDG--VDAADLLAILKALKAKGVHAKLLYPRMGE---VTADDGTV-LPIA-AT----FAGAPSLTFD 660 (752)
T ss_pred CCCccccEEEEEecCC--CCHHHHHHHHHHHHHCCCEEEEEECCCCe---EECCCCCE-Eecc-ee----eccCCccCCC
Confidence 4555567899888533 23344567888887665433333332211 10000000 0000 01 1222 23689
Q ss_pred EEEEEcCc---------hhHHHHHHHcCCCCCcEEEEeCC
Q psy5950 245 FIICLGGD---------GTLLYASLLFQQSVPPVMAFHLG 275 (511)
Q Consensus 245 lVIvLGGD---------GTlL~Aar~~~~~~~PILGINlG 275 (511)
.|++.||. +-++...+.+....++|.+|..|
T Consensus 661 AVvVPGG~~~~~~L~~d~~al~fL~eaykHgK~IAAiCaG 700 (752)
T PRK11249 661 AVIVPGGKANIADLADNGDARYYLLEAYKHLKPIALAGDA 700 (752)
T ss_pred EEEECCCchhHHHHhhCHHHHHHHHHHHHcCCEEEEeCcc
Confidence 99999994 23444455555678899888776
No 197
>PTZ00287 6-phosphofructokinase; Provisional
Probab=30.61 E-value=45 Score=41.69 Aligned_cols=33 Identities=24% Similarity=0.469 Sum_probs=25.8
Q ss_pred CCccEEEEEcCchhHHHHHHHcC---CCCCc--EEEEe
Q psy5950 241 DKIDFIICLGGDGTLLYASLLFQ---QSVPP--VMAFH 273 (511)
Q Consensus 241 ~~~DlVIvLGGDGTlL~Aar~~~---~~~~P--ILGIN 273 (511)
-++|.+|++|||||+-.|+.+.. ..++| |+||-
T Consensus 270 l~Id~LViIGGddS~~~A~~Lae~~~~~gi~i~VIGIP 307 (1419)
T PTZ00287 270 LKLNGLVIIGGDGSNSNAALISEYFAERQIPISIIGIP 307 (1419)
T ss_pred cCCCEEEEECChhHHHHHHHHHHHHHhcCCCeeEEEEe
Confidence 37899999999999998887653 24667 68873
No 198
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=29.11 E-value=46 Score=31.94 Aligned_cols=35 Identities=29% Similarity=0.265 Sum_probs=21.3
Q ss_pred CCccEEEEEcC-c-hh---------HHHHHHHcCCCCCcEEEEeCC
Q psy5950 241 DKIDFIICLGG-D-GT---------LLYASLLFQQSVPPVMAFHLG 275 (511)
Q Consensus 241 ~~~DlVIvLGG-D-GT---------lL~Aar~~~~~~~PILGINlG 275 (511)
.++|.||.=|| + ++ +..+.+.+...+.|||||-.|
T Consensus 36 ~~~d~lilpG~g~~~~~~~~l~~~~~~~~i~~~~~~~~PvlGiC~G 81 (199)
T PRK13181 36 AGADKVILPGVGAFGQAMRSLRESGLDEALKEHVEKKQPVLGICLG 81 (199)
T ss_pred ccCCEEEECCCCCHHHHHHHHHHCChHHHHHHHHHCCCCEEEECHh
Confidence 35798885442 2 22 123334333568999999988
No 199
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=28.90 E-value=92 Score=30.11 Aligned_cols=86 Identities=9% Similarity=-0.108 Sum_probs=50.2
Q ss_pred EEEEec-CCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEEcCc
Q psy5950 174 VLVIKK-VRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICLGGD 252 (511)
Q Consensus 174 VlII~K-~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvLGGD 252 (511)
||+|.+ ..++-....+..+.+.+++. ++.+.+...-. +.... .+.+. .-+..++|.+|+.+.+
T Consensus 2 ~g~~~~~~~~~~~~~~~~~~~~~a~~~-g~~~~~~~~~~-~~~~~--------~~~i~------~l~~~~vdgiIi~~~~ 65 (273)
T cd06309 2 VGFSQVGAESPWRTAETKSIKDAAEKR-GFDLKFADAQQ-KQENQ--------ISAIR------SFIAQGVDVIILAPVV 65 (273)
T ss_pred eeeccCCCCCHHHHHHHHHHHHHHHhc-CCEEEEeCCCC-CHHHH--------HHHHH------HHHHcCCCEEEEcCCc
Confidence 666655 66776677778888888764 56665543211 11000 00010 1123578999998877
Q ss_pred hhH-HHHHHHcCCCCCcEEEEeCC
Q psy5950 253 GTL-LYASLLFQQSVPPVMAFHLG 275 (511)
Q Consensus 253 GTl-L~Aar~~~~~~~PILGINlG 275 (511)
... -...+.+...++|++.+|..
T Consensus 66 ~~~~~~~i~~~~~~~iPvV~~~~~ 89 (273)
T cd06309 66 ETGWDPVLKEAKAAGIPVILVDRG 89 (273)
T ss_pred cccchHHHHHHHHCCCCEEEEecC
Confidence 542 23345555668999999964
No 200
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=28.83 E-value=45 Score=33.22 Aligned_cols=35 Identities=23% Similarity=0.220 Sum_probs=27.3
Q ss_pred CCccEEEEEcCchh---------------HHHHHHHcCCCCCcEEEEeCC
Q psy5950 241 DKIDFIICLGGDGT---------------LLYASLLFQQSVPPVMAFHLG 275 (511)
Q Consensus 241 ~~~DlVIvLGGDGT---------------lL~Aar~~~~~~~PILGINlG 275 (511)
+++|.||.-||-.. ++...+.+...+.||+||-.|
T Consensus 42 ~~~d~liipGG~~~~d~l~~~~~~~~~~~~~~~l~~~~~~g~pvlGIC~G 91 (238)
T cd01740 42 DDYDGVVLPGGFSYGDYLRAGAIAAASPLLMEEVKEFAERGGLVLGICNG 91 (238)
T ss_pred hhCCEEEECCCCCcccccccccccccChhHHHHHHHHHhCCCeEEEECcH
Confidence 46899999999431 556677777789999999876
No 201
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=28.75 E-value=43 Score=34.17 Aligned_cols=58 Identities=19% Similarity=0.301 Sum_probs=40.8
Q ss_pred CCCCCCccEEEEEcCchhHHHHHHHcCCCCCcEEEEeCC-----------------CccccccC---CcccHHHHHHHHH
Q psy5950 237 DDLTDKIDFIICLGGDGTLLYASLLFQQSVPPVMAFHLG-----------------SLGFLTPF---EFENFEDQVTNVL 296 (511)
Q Consensus 237 ~~~~~~~DlVIvLGGDGTlL~Aar~~~~~~~PILGINlG-----------------~LGFLt~~---~~~~~~~~L~~il 296 (511)
.++...+|++|+-+|=+|++.|+.. ++|++.+..| ..|++.+. +++++.++|++++
T Consensus 247 ~~~~~~~d~~i~~~g~~~~~Ea~~~----g~Pvv~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~l~~~i~~ll 322 (357)
T PRK00726 247 AAAYAAADLVICRAGASTVAELAAA----GLPAILVPLPHAADDHQTANARALVDAGAALLIPQSDLTPEKLAEKLLELL 322 (357)
T ss_pred HHHHHhCCEEEECCCHHHHHHHHHh----CCCEEEecCCCCCcCcHHHHHHHHHHCCCEEEEEcccCCHHHHHHHHHHHH
Confidence 4455688999998876777777644 7899987542 24666643 2677888888877
Q ss_pred cC
Q psy5950 297 EG 298 (511)
Q Consensus 297 ~G 298 (511)
+.
T Consensus 323 ~~ 324 (357)
T PRK00726 323 SD 324 (357)
T ss_pred cC
Confidence 64
No 202
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=28.73 E-value=2.1e+02 Score=29.43 Aligned_cols=95 Identities=16% Similarity=0.192 Sum_probs=50.0
Q ss_pred cccCCCCcEEEEEecCCChhhHHHHHHHHHHHHhcC-CeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCc
Q psy5950 165 LTWYKPPLTVLVIKKVRDVSVLQPFVKLVKWLIQEK-SMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKI 243 (511)
Q Consensus 165 l~w~~~p~~VlII~K~~~~~~~~~~~el~~~L~~~~-~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~ 243 (511)
++....|++|+||+-+... ....++.-+..+. .+.+++-+.... .+.....+.+.|..+.. ......+
T Consensus 8 ~~lP~~p~~I~vITs~~gA----a~~D~~~~~~~r~~~~~~~~~p~~vQ-----G~~A~~~I~~al~~~~~--~~~~~~~ 76 (319)
T PF02601_consen 8 KPLPKFPKRIAVITSPTGA----AIQDFLRTLKRRNPIVEIILYPASVQ-----GEGAAASIVSALRKANE--MGQADDF 76 (319)
T ss_pred CCCCCCCCEEEEEeCCchH----HHHHHHHHHHHhCCCcEEEEEecccc-----ccchHHHHHHHHHHHHh--ccccccc
Confidence 3455679999999965443 3345555555443 355554433221 00001112222222210 1112468
Q ss_pred cEEEEEcCchhHH--------HHHHHcCCCCCcEE
Q psy5950 244 DFIICLGGDGTLL--------YASLLFQQSVPPVM 270 (511)
Q Consensus 244 DlVIvLGGDGTlL--------~Aar~~~~~~~PIL 270 (511)
|+||+.=|=|.+- ..++.+..+.+||+
T Consensus 77 Dviii~RGGGs~eDL~~FN~e~varai~~~~~Pvi 111 (319)
T PF02601_consen 77 DVIIIIRGGGSIEDLWAFNDEEVARAIAASPIPVI 111 (319)
T ss_pred cEEEEecCCCChHHhcccChHHHHHHHHhCCCCEE
Confidence 9988887768653 34566667788988
No 203
>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=28.46 E-value=75 Score=29.58 Aligned_cols=44 Identities=25% Similarity=0.211 Sum_probs=32.3
Q ss_pred CCCccEEEEEcCchh--------HHHHHHHcCCCCCcEEEEeCCC-----ccccccC
Q psy5950 240 TDKIDFIICLGGDGT--------LLYASLLFQQSVPPVMAFHLGS-----LGFLTPF 283 (511)
Q Consensus 240 ~~~~DlVIvLGGDGT--------lL~Aar~~~~~~~PILGINlG~-----LGFLt~~ 283 (511)
..++|++|+.||++. ++...+.+.....+|.+|-.|. .|.|..-
T Consensus 62 ~~~~D~liipGg~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~aGlL~~~ 118 (187)
T cd03137 62 LAAADTVIVPGGPDVDGRPPPPALLAALRRAAARGARVASVCTGAFVLAEAGLLDGR 118 (187)
T ss_pred cCCCCEEEECCCcccccccCCHHHHHHHHHHHhcCCEEEEECHHHHHHHHccCcCCC
Confidence 347899999999876 5556666666788999998774 4666543
No 204
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=27.27 E-value=1.7e+02 Score=29.95 Aligned_cols=92 Identities=12% Similarity=-0.042 Sum_probs=53.4
Q ss_pred CCCcEEEEEec-CCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEE
Q psy5950 169 KPPLTVLVIKK-VRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFII 247 (511)
Q Consensus 169 ~~p~~VlII~K-~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVI 247 (511)
+++++|+++.. ..++-..+.+..+.+.+.+.++..+++.... .+.... .+.+.. -....+|.+|
T Consensus 22 ~~~~~Igvv~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~--------~~~i~~------l~~~~vdgiI 86 (330)
T PRK15395 22 AADTRIGVTIYKYDDNFMSVVRKAIEKDAKAAPDVQLLMNDSQ-NDQSKQ--------NDQIDV------LLAKGVKALA 86 (330)
T ss_pred cCCceEEEEEecCcchHHHHHHHHHHHHHHhcCCeEEEEecCC-CCHHHH--------HHHHHH------HHHcCCCEEE
Confidence 56788998875 4455555566677788876555555542211 110000 000000 1135789999
Q ss_pred EEcCchhHHHH-HHHcCCCCCcEEEEeCC
Q psy5950 248 CLGGDGTLLYA-SLLFQQSVPPVMAFHLG 275 (511)
Q Consensus 248 vLGGDGTlL~A-ar~~~~~~~PILGINlG 275 (511)
+.+.|...... ...+...++|++-|+..
T Consensus 87 i~~~~~~~~~~~l~~l~~~giPvV~vd~~ 115 (330)
T PRK15395 87 INLVDPAAAPTVIEKARGQDVPVVFFNKE 115 (330)
T ss_pred EeccCHHHHHHHHHHHHHCCCcEEEEcCC
Confidence 99888765543 45555678999999863
No 205
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=27.10 E-value=73 Score=35.50 Aligned_cols=54 Identities=13% Similarity=0.185 Sum_probs=40.2
Q ss_pred CCccEEEEEcCchhHHHHHHHcCCCCCcEEEEeCC-----------C--cccc---ccCCcccHHHHHHHHHcC
Q psy5950 241 DKIDFIICLGGDGTLLYASLLFQQSVPPVMAFHLG-----------S--LGFL---TPFEFENFEDQVTNVLEG 298 (511)
Q Consensus 241 ~~~DlVIvLGGDGTlL~Aar~~~~~~~PILGINlG-----------~--LGFL---t~~~~~~~~~~L~~il~G 298 (511)
.+++++|+-||=||+..|+.. ++|++++-.. . .|-. ..++.+++.++|.++++.
T Consensus 363 p~v~~fItHGG~~s~~Eal~~----GvP~v~iP~~~DQ~~Na~rv~~~G~G~~l~~~~~t~~~l~~ai~~vl~~ 432 (507)
T PHA03392 363 KNVKAFVTQGGVQSTDEAIDA----LVPMVGLPMMGDQFYNTNKYVELGIGRALDTVTVSAAQLVLAIVDVIEN 432 (507)
T ss_pred CCCCEEEecCCcccHHHHHHc----CCCEEECCCCccHHHHHHHHHHcCcEEEeccCCcCHHHHHHHHHHHhCC
Confidence 568999999999999998865 8899987542 1 2321 245667788888888764
No 206
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=26.70 E-value=56 Score=30.54 Aligned_cols=36 Identities=28% Similarity=0.417 Sum_probs=27.5
Q ss_pred CCccEEEEEcCchh--------HHHHHHHcCCCCCcEEEEeCCC
Q psy5950 241 DKIDFIICLGGDGT--------LLYASLLFQQSVPPVMAFHLGS 276 (511)
Q Consensus 241 ~~~DlVIvLGGDGT--------lL~Aar~~~~~~~PILGINlG~ 276 (511)
.++|++|+.||.|+ ++...+.+.....||.+|..|.
T Consensus 75 ~~~D~liv~GG~~~~~~~~~~~~~~~l~~~~~~~k~i~~ic~G~ 118 (180)
T cd03169 75 DDYDALVIPGGRAPEYLRLDEKVLAIVRHFAEANKPVAAICHGP 118 (180)
T ss_pred hHCCEEEEcCCCChhhhccCHHHHHHHHHHHHcCCEEEEECcHH
Confidence 36799999999663 4455555556789999999985
No 207
>COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion]
Probab=26.58 E-value=71 Score=34.46 Aligned_cols=77 Identities=18% Similarity=0.333 Sum_probs=45.1
Q ss_pred CcEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEEc
Q psy5950 171 PLTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICLG 250 (511)
Q Consensus 171 p~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvLG 250 (511)
-++|||++--..-.-.-...++.+-|+ ++.++ |- ..+..++++..+.+...-.. .+++|+++.+|
T Consensus 29 ~~kVLi~YGGGSIKrnGvydqV~~~Lk---g~~~~-E~-----~GVEPNP~~~Tv~kaV~i~k------ee~idflLAVG 93 (384)
T COG1979 29 DAKVLIVYGGGSIKKNGVYDQVVEALK---GIEVI-EF-----GGVEPNPRLETLMKAVEICK------EENIDFLLAVG 93 (384)
T ss_pred cCeEEEEecCccccccchHHHHHHHhc---CceEE-Ee-----cCCCCCchHHHHHHHHHHHH------HcCceEEEEec
Confidence 478999986543333455677888785 44432 21 12333455544433221111 36799999999
Q ss_pred CchhHHHHHHHcC
Q psy5950 251 GDGTLLYASLLFQ 263 (511)
Q Consensus 251 GDGTlL~Aar~~~ 263 (511)
| |.++..++.+.
T Consensus 94 G-GSViD~tK~IA 105 (384)
T COG1979 94 G-GSVIDGTKFIA 105 (384)
T ss_pred C-cchhhhHHHHH
Confidence 9 77777766543
No 208
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=25.90 E-value=2.7e+02 Score=31.04 Aligned_cols=102 Identities=17% Similarity=0.215 Sum_probs=57.8
Q ss_pred cCCCCcEEEEEecCCChhhHHHHHHHHHHHHhcC-CeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccE
Q psy5950 167 WYKPPLTVLVIKKVRDVSVLQPFVKLVKWLIQEK-SMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDF 245 (511)
Q Consensus 167 w~~~p~~VlII~K~~~~~~~~~~~el~~~L~~~~-~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~Dl 245 (511)
-.+.|++||||+-+.. ..+..+++-+..+. .+.|++-+-.-. .+..-..+-+.+..++ . ..++|+
T Consensus 131 LP~~p~~IGVITS~tg----AairDIl~~~~rR~P~~~viv~pt~VQ-----G~~A~~eIv~aI~~an----~-~~~~Dv 196 (440)
T COG1570 131 LPFFPKKIGVITSPTG----AALRDILHTLSRRFPSVEVIVYPTLVQ-----GEGAAEEIVEAIERAN----Q-RGDVDV 196 (440)
T ss_pred CCCCCCeEEEEcCCch----HHHHHHHHHHHhhCCCCeEEEEecccc-----CCCcHHHHHHHHHHhh----c-cCCCCE
Confidence 3467999999996543 34567777776653 366665443221 1111111222222321 1 234899
Q ss_pred EEEEcCchhHH--------HHHHHcCCCCCcEEEEeCCCccccccCCcc
Q psy5950 246 IICLGGDGTLL--------YASLLFQQSVPPVMAFHLGSLGFLTPFEFE 286 (511)
Q Consensus 246 VIvLGGDGTlL--------~Aar~~~~~~~PILGINlG~LGFLt~~~~~ 286 (511)
+|+-=|=|.+= ..+|.+..+.+||+. -+|.=|++...
T Consensus 197 lIVaRGGGSiEDLW~FNdE~vaRAi~~s~iPvIS----AVGHEtD~tL~ 241 (440)
T COG1570 197 LIVARGGGSIEDLWAFNDEIVARAIAASRIPVIS----AVGHETDFTLA 241 (440)
T ss_pred EEEecCcchHHHHhccChHHHHHHHHhCCCCeEe----ecccCCCccHH
Confidence 99988878872 345666677899985 24555555533
No 209
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=25.53 E-value=50 Score=30.12 Aligned_cols=35 Identities=23% Similarity=0.301 Sum_probs=26.2
Q ss_pred CccEEEEEcCchh--------HHHHHHHcCCCCCcEEEEeCCC
Q psy5950 242 KIDFIICLGGDGT--------LLYASLLFQQSVPPVMAFHLGS 276 (511)
Q Consensus 242 ~~DlVIvLGGDGT--------lL~Aar~~~~~~~PILGINlG~ 276 (511)
++|+||+.||.|. ++...+.+.....||.+|-.|.
T Consensus 60 ~~D~vvv~Gg~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~ 102 (166)
T TIGR01382 60 EYDALVIPGGRAPEYLRLNNKAVRLVREFVEKGKPVAAICHGP 102 (166)
T ss_pred HCcEEEECCCCCHHHhccCHHHHHHHHHHHHcCCEEEEEChHH
Confidence 5899999999763 3444445556788999999885
No 210
>PRK01293 phosphoribosyl-dephospho-CoA transferase; Provisional
Probab=25.13 E-value=41 Score=33.55 Aligned_cols=27 Identities=22% Similarity=0.422 Sum_probs=22.6
Q ss_pred CCCchhHHHhhcCCCccCCCCCceEEE
Q psy5950 369 TPTGSTAYAVAAGASMIHPSVPAIMVT 395 (511)
Q Consensus 369 TPTGSTAYsLSAGGPIV~P~v~aivIT 395 (511)
=+|||+||-|+.|=|.+|+..+.=++.
T Consensus 113 gv~GS~g~qlaTGl~~l~~~SDLDLli 139 (207)
T PRK01293 113 GVTGSAGFELATGIPVLHADSDLDLLI 139 (207)
T ss_pred eeehhHHHHHhhCCccccCCCCccEee
Confidence 389999999999999999987654444
No 211
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=25.12 E-value=70 Score=28.69 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=29.6
Q ss_pred CccEEEEEcCchhHHHHHHHcCCCCCcEEEEeCC
Q psy5950 242 KIDFIICLGGDGTLLYASLLFQQSVPPVMAFHLG 275 (511)
Q Consensus 242 ~~DlVIvLGGDGTlL~Aar~~~~~~~PILGINlG 275 (511)
.+|.+|.+.|||-++-+++.+...+..|..+...
T Consensus 99 ~~d~ivLvSgD~Df~~~i~~lr~~G~~V~v~~~~ 132 (149)
T cd06167 99 RIDTIVLVSGDSDFVPLVERLRELGKRVIVVGFE 132 (149)
T ss_pred CCCEEEEEECCccHHHHHHHHHHcCCEEEEEccC
Confidence 6899999999999999999999888888776544
No 212
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=24.87 E-value=58 Score=29.11 Aligned_cols=36 Identities=22% Similarity=0.141 Sum_probs=26.3
Q ss_pred CCccEEEEEcCchh---------HHHHHHHcCCCCCcEEEEeCCC
Q psy5950 241 DKIDFIICLGGDGT---------LLYASLLFQQSVPPVMAFHLGS 276 (511)
Q Consensus 241 ~~~DlVIvLGGDGT---------lL~Aar~~~~~~~PILGINlG~ 276 (511)
.++|++|+.||.+. ++...+.+.....||.+|-.|.
T Consensus 61 ~~~D~liVpGg~~~~~~~~~~~~l~~~l~~~~~~~~~I~aic~G~ 105 (142)
T cd03132 61 VLFDAVVVPGGAEAAFALAPSGRALHFVTEAFKHGKPIGAVGEGS 105 (142)
T ss_pred hhcCEEEECCCccCHHHHccChHHHHHHHHHHhcCCeEEEcCchH
Confidence 36899999999765 3344555555688999998874
No 213
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=24.83 E-value=3e+02 Score=26.79 Aligned_cols=56 Identities=23% Similarity=0.213 Sum_probs=36.5
Q ss_pred CCCCccEEEEEcCc----hhHHHHHHHcCCCCCcEEEEeCC---------Ccccccc-CCcccHHHHHHHHHcC
Q psy5950 239 LTDKIDFIICLGGD----GTLLYASLLFQQSVPPVMAFHLG---------SLGFLTP-FEFENFEDQVTNVLEG 298 (511)
Q Consensus 239 ~~~~~DlVIvLGGD----GTlL~Aar~~~~~~~PILGINlG---------~LGFLt~-~~~~~~~~~L~~il~G 298 (511)
+...+|++|.-... .|+|.|.. .++||++-+.| ..|++.+ -+.+++.+.|.++++.
T Consensus 263 ~~~~~d~~l~~s~~e~~~~~~lEa~a----~g~PvI~~~~~~~~~~i~~~~~g~~~~~~~~~~l~~~i~~l~~~ 332 (364)
T cd03814 263 AYASADVFVFPSRTETFGLVVLEAMA----SGLPVVAPDAGGPADIVTDGENGLLVEPGDAEAFAAALAALLAD 332 (364)
T ss_pred HHHhCCEEEECcccccCCcHHHHHHH----cCCCEEEcCCCCchhhhcCCcceEEcCCCCHHHHHHHHHHHHcC
Confidence 34577998876654 45666553 38899987765 4567653 3445577777777664
No 214
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=24.82 E-value=4e+02 Score=24.84 Aligned_cols=38 Identities=29% Similarity=0.317 Sum_probs=31.4
Q ss_pred CCCccEEEEEcCc---------hhHHHHHHHcCCCCCcEEEEeCCCc
Q psy5950 240 TDKIDFIICLGGD---------GTLLYASLLFQQSVPPVMAFHLGSL 277 (511)
Q Consensus 240 ~~~~DlVIvLGGD---------GTlL~Aar~~~~~~~PILGINlG~L 277 (511)
.+++|++++-||+ -.++..++.|...+.||.+|--|..
T Consensus 64 ~~~ydal~ipGG~~~~~~~~~~~~~~~~v~~~~~~~k~vaaIC~g~~ 110 (188)
T COG0693 64 AADYDALVIPGGDHGPEYLRPDPDLLAFVRDFYANGKPVAAICHGPA 110 (188)
T ss_pred HhHCCEEEECCCccchhhccCcHHHHHHHHHHHHcCCEEEEEChhHH
Confidence 3689999999994 4578888888888999999988754
No 215
>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional
Probab=24.73 E-value=2.8e+02 Score=32.10 Aligned_cols=95 Identities=15% Similarity=0.271 Sum_probs=56.5
Q ss_pred CCCcEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEE
Q psy5950 169 KPPLTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIIC 248 (511)
Q Consensus 169 ~~p~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIv 248 (511)
+++.+|+++.-..=....-...++-++|+++ ++.+-+++.... + .+...+++|++|+
T Consensus 504 ~k~mKILvaCGsGiGTStmva~kIkk~Lke~-GI~veV~~~~Vs-----e-----------------v~s~~~~aDIIVt 560 (602)
T PRK09548 504 GKPVRILAVCGQGQGSSMMMKMKIKKYLDKR-GIPIIMDSCAVN-----D-----------------YKGKLETIDIIVC 560 (602)
T ss_pred CcccEEEEECCCCchHHHHHHHHHHHHHHHc-CCCeEEEEechH-----h-----------------CcccCCCCCEEEE
Confidence 3566899999766566666677888899864 555544432111 0 1112345788886
Q ss_pred EcC-chhHHHHHHHcC-CCCCcEEEEeCCCccccccCCcccHHHHHHHHHcCCc
Q psy5950 249 LGG-DGTLLYASLLFQ-QSVPPVMAFHLGSLGFLTPFEFENFEDQVTNVLEGHA 300 (511)
Q Consensus 249 LGG-DGTlL~Aar~~~-~~~~PILGINlG~LGFLt~~~~~~~~~~L~~il~G~~ 300 (511)
--- +.. +. ...++++ |+++-++.+++++.|.++++.++
T Consensus 561 t~~La~~-------i~i~~~~~VI-------gl~N~i~~dei~ekI~e~Lk~~~ 600 (602)
T PRK09548 561 SKHLANE-------IEFGEGKFVL-------GVQNMLNPNSFGDELLELIKKNF 600 (602)
T ss_pred cccchhh-------hccCCCceEE-------EEecCCChHHHHHHHHHHHHHhh
Confidence 432 222 11 1224454 45555788899888888877654
No 216
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=24.51 E-value=91 Score=27.89 Aligned_cols=126 Identities=19% Similarity=0.229 Sum_probs=64.7
Q ss_pred ccCCCCcEEEEEecCCChhhHHHHHHHHHHHHh--cCCeEEEEcCCccc---cccccCCCCccccccccc--cccC--CC
Q psy5950 166 TWYKPPLTVLVIKKVRDVSVLQPFVKLVKWLIQ--EKSMLVYVEQSVMD---DTLLATNPSFTVVKDKLM--TFRD--GK 236 (511)
Q Consensus 166 ~w~~~p~~VlII~K~~~~~~~~~~~el~~~L~~--~~~~~V~ve~~~~~---~~~l~~~~~f~~~~~~l~--~~~~--~~ 236 (511)
.....+..|+.+.+.....-...+.+++..+.+ ...+.+.+--.... ......... +.+.+. .+.. ..
T Consensus 10 ~~~~~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~l 86 (172)
T PF00534_consen 10 KIPDKKKIILFIGRLDPEKGIDLLIEAFKKLKEKKNPNYKLVIVGDGEYKKELKNLIEKLN---LKENIIFLGYVPDDEL 86 (172)
T ss_dssp TT-TTSEEEEEESESSGGGTHHHHHHHHHHHHHHHHTTEEEEEESHCCHHHHHHHHHHHTT---CGTTEEEEESHSHHHH
T ss_pred CCCCCCeEEEEEecCccccCHHHHHHHHHHHHhhcCCCeEEEEEccccccccccccccccc---cccccccccccccccc
Confidence 444567789999987765555666666666653 34554444331110 000000000 001110 1100 11
Q ss_pred CCCCCCccEEEEE----cCchhHHHHHHHcCCCCCcEEEEeCC---------Cccccc-cCCcccHHHHHHHHHcC
Q psy5950 237 DDLTDKIDFIICL----GGDGTLLYASLLFQQSVPPVMAFHLG---------SLGFLT-PFEFENFEDQVTNVLEG 298 (511)
Q Consensus 237 ~~~~~~~DlVIvL----GGDGTlL~Aar~~~~~~~PILGINlG---------~LGFLt-~~~~~~~~~~L~~il~G 298 (511)
.++...+|++|+. |.=.+++.|... +.|++.-+.| .-|++. +.+.+++.++|.++++.
T Consensus 87 ~~~~~~~di~v~~s~~e~~~~~~~Ea~~~----g~pvI~~~~~~~~e~~~~~~~g~~~~~~~~~~l~~~i~~~l~~ 158 (172)
T PF00534_consen 87 DELYKSSDIFVSPSRNEGFGLSLLEAMAC----GCPVIASDIGGNNEIINDGVNGFLFDPNDIEELADAIEKLLND 158 (172)
T ss_dssp HHHHHHTSEEEE-BSSBSS-HHHHHHHHT----T-EEEEESSTHHHHHSGTTTSEEEESTTSHHHHHHHHHHHHHH
T ss_pred ccccccceecccccccccccccccccccc----ccceeeccccCCceeeccccceEEeCCCCHHHHHHHHHHHHCC
Confidence 2233467999987 444566665533 7899988864 446776 44567788888877753
No 217
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=24.16 E-value=1.4e+02 Score=28.80 Aligned_cols=36 Identities=28% Similarity=0.231 Sum_probs=23.3
Q ss_pred CCccEEEEEcCc--hh-------HHHHHHHcCCCCCcEEEEeCCC
Q psy5950 241 DKIDFIICLGGD--GT-------LLYASLLFQQSVPPVMAFHLGS 276 (511)
Q Consensus 241 ~~~DlVIvLGGD--GT-------lL~Aar~~~~~~~PILGINlG~ 276 (511)
+++|.+|.-||- +. +....+.+...+.|||||=.|.
T Consensus 37 ~~~d~iii~G~~~~~~~~~~~~~~~~~i~~~~~~~~PilgIC~G~ 81 (200)
T PRK13143 37 LDADGIVLPGVGAFGAAMENLSPLRDVILEAARSGKPFLGICLGM 81 (200)
T ss_pred ccCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECHHH
Confidence 357988887752 22 2334444445678999998773
No 218
>KOG1169|consensus
Probab=24.10 E-value=1.6e+02 Score=34.23 Aligned_cols=69 Identities=23% Similarity=0.277 Sum_probs=44.4
Q ss_pred EEEEEcCchhH---HHHHHHcCC----CCCcEEEEeCCC-------ccccccCCccc--HHHHHHHHHcCCcEEEEEeeE
Q psy5950 245 FIICLGGDGTL---LYASLLFQQ----SVPPVMAFHLGS-------LGFLTPFEFEN--FEDQVTNVLEGHAALTLRSRL 308 (511)
Q Consensus 245 lVIvLGGDGTl---L~Aar~~~~----~~~PILGINlG~-------LGFLt~~~~~~--~~~~L~~il~G~~~ie~R~rL 308 (511)
-|++-|||||+ |.+...+.. ..|||-=+-+|+ ||-=..++.++ +...|+++.........|.-+
T Consensus 326 riLVcGGDGTvGWVL~~i~~~n~~~~~~~PpVAilPLGTGNDLsR~l~WGgg~~g~~~~~~~iL~~i~~a~v~~lDrW~v 405 (634)
T KOG1169|consen 326 RILVCGGDGTVGWVLGCIDKLNKQNAIPPPPVAILPLGTGNDLSRVLRWGGGYPGEDRNLIKILKDIEEAPVTKLDRWKV 405 (634)
T ss_pred eEEEecCCCcchhhhhhHHHhhccccCCCCCeEEEecCCCCchHhhcCCCCCCCcchhhHHHHHHhhhhccceecceeeE
Confidence 79999999996 555544321 245665445552 33334455444 889999999888777777766
Q ss_pred EEEEE
Q psy5950 309 RCIIM 313 (511)
Q Consensus 309 ~v~V~ 313 (511)
.++-.
T Consensus 406 ~v~~~ 410 (634)
T KOG1169|consen 406 LVEPQ 410 (634)
T ss_pred Eeecc
Confidence 66543
No 219
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=23.65 E-value=1e+02 Score=33.53 Aligned_cols=35 Identities=17% Similarity=0.242 Sum_probs=23.7
Q ss_pred CccEEEEEcCchhH------HHHHHHcCCCCCcEEEEeCCC
Q psy5950 242 KIDFIICLGGDGTL------LYASLLFQQSVPPVMAFHLGS 276 (511)
Q Consensus 242 ~~DlVIvLGGDGTl------L~Aar~~~~~~~PILGINlG~ 276 (511)
++|.||.-||-|.. +...+.+....+||+||-+|+
T Consensus 233 ~~dgIilSgGPg~p~~~~~~i~~i~~~~~~~~PilGIClGh 273 (382)
T CHL00197 233 QPDGILLSNGPGDPSAIHYGIKTVKKLLKYNIPIFGICMGH 273 (382)
T ss_pred CCCEEEEcCCCCChhHHHHHHHHHHHHHhCCCCEEEEcHHH
Confidence 57999999986632 122233334478999999985
No 220
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=22.92 E-value=3.8e+02 Score=21.75 Aligned_cols=37 Identities=22% Similarity=0.182 Sum_probs=24.9
Q ss_pred CcEEEEEecCC-ChhhHHHHHHHHHHHHhcCCeEEEEcC
Q psy5950 171 PLTVLVIKKVR-DVSVLQPFVKLVKWLIQEKSMLVYVEQ 208 (511)
Q Consensus 171 p~~VlII~K~~-~~~~~~~~~el~~~L~~~~~~~V~ve~ 208 (511)
|..|.|+.-.. +++....+.+++.-|+.. ++.|.++.
T Consensus 1 P~qv~i~p~~~~~~~~~~~a~~la~~Lr~~-g~~v~~d~ 38 (94)
T cd00861 1 PFDVVIIPMNMKDEVQQELAEKLYAELQAA-GVDVLLDD 38 (94)
T ss_pred CeEEEEEEcCCCcHHHHHHHHHHHHHHHHC-CCEEEEEC
Confidence 45677776433 246777888999999864 66766653
No 221
>COG1810 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.25 E-value=2.4e+02 Score=28.68 Aligned_cols=109 Identities=17% Similarity=0.203 Sum_probs=62.8
Q ss_pred CCccEEEEEcCchhHHHHHHHc---CCCCCcEEEEeCCCccccccCCcccHHHHHHHHHcCCcEEEEEeeEEEEEEeCCc
Q psy5950 241 DKIDFIICLGGDGTLLYASLLF---QQSVPPVMAFHLGSLGFLTPFEFENFEDQVTNVLEGHAALTLRSRLRCIIMRKNE 317 (511)
Q Consensus 241 ~~~DlVIvLGGDGTlL~Aar~~---~~~~~PILGINlG~LGFLt~~~~~~~~~~L~~il~G~~~ie~R~rL~v~V~~~~~ 317 (511)
..+|++|+.|=-.-||.++-.. .....-|++.-.+. -+.++|++.-+..-..-.-+..-|.+...+
T Consensus 54 ~e~Di~va~~lHPDl~~~L~e~~~~~~~~alIvp~~~~~----------g~rkqL~~~~~~~g~e~~~p~p~C~Le~~~- 122 (224)
T COG1810 54 PEADIVVAYGLHPDLLLALPEKAAEGGVKALIVPAEPPE----------GLRKQLKEFCEELGVEFEAPEPFCSLEPNE- 122 (224)
T ss_pred CCCCEEEEeccCccHHHHHHHHHHhCCccEEEEecCCCh----------hHHHHHHHHhhhcceeeecCCccccCCCCC-
Confidence 5789999987666666666542 22333344544443 456667766552222122233334442211
Q ss_pred ccccCCCCCCccceeeeEEeecCCCCcEEEEEEEECCEEEEEEecCeeEEcCCCchhHHHh
Q psy5950 318 ETAKDAKPPTNILVLNEVVIDRGPSPYLSNIDLYLDGKLITSVQGDGLIVSTPTGSTAYAV 378 (511)
Q Consensus 318 ~~~~~~~~~~~~~ALNEVvI~Rg~~~~~~~i~v~idg~~v~~~rgDGLIVSTPTGSTAYsL 378 (511)
...+|+. +.+...+ .++|++.+..+..+ .|+-|-|-|||=|.+
T Consensus 123 -----------~p~i~~F-~e~FG~P---~vevev~~~~i~~V---~V~RsaPCGsT~~vA 165 (224)
T COG1810 123 -----------NPHIDEF-AERFGKP---EVEVEVENGKIKDV---DVLRSAPCGSTWYVA 165 (224)
T ss_pred -----------ChHHHHH-HHHcCCc---eEEEEecCCeEEEE---EEEecCCCchHHHHH
Confidence 2233333 2333223 57888888888877 899999999999865
No 222
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=22.04 E-value=2.9e+02 Score=26.87 Aligned_cols=36 Identities=22% Similarity=0.125 Sum_probs=21.5
Q ss_pred CCccEEEEEcCc-hhHHHHHH---------HcCCCCCcEEEEeCCC
Q psy5950 241 DKIDFIICLGGD-GTLLYASL---------LFQQSVPPVMAFHLGS 276 (511)
Q Consensus 241 ~~~DlVIvLGGD-GTlL~Aar---------~~~~~~~PILGINlG~ 276 (511)
.++|.|++=||| ..+++..+ .....+.|++|+..|.
T Consensus 79 ~~ad~I~l~GG~~~~~~~~l~~~~l~~~l~~~~~~g~~i~G~SAGa 124 (212)
T cd03146 79 LEADVIYVGGGNTFNLLAQWREHGLDAILKAALERGVVYIGWSAGS 124 (212)
T ss_pred hcCCEEEECCchHHHHHHHHHHcCHHHHHHHHHHCCCEEEEECHhH
Confidence 467888888875 22222221 1123478999999873
No 223
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=21.84 E-value=1.1e+02 Score=29.69 Aligned_cols=55 Identities=24% Similarity=0.260 Sum_probs=35.7
Q ss_pred CCCccEEEEEcCc----hhHHHHHHHcCCCCCcEEEEeCC---------CccccccCCcccHHHHHHHHHcC
Q psy5950 240 TDKIDFIICLGGD----GTLLYASLLFQQSVPPVMAFHLG---------SLGFLTPFEFENFEDQVTNVLEG 298 (511)
Q Consensus 240 ~~~~DlVIvLGGD----GTlL~Aar~~~~~~~PILGINlG---------~LGFLt~~~~~~~~~~L~~il~G 298 (511)
...+|++|....- .+++.|. ..++||++.+.| .-||+.+.+..++.++|.++++.
T Consensus 276 ~~~ad~~l~~s~~e~~~~~~~Ea~----~~g~PvI~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~i~~l~~~ 343 (374)
T cd03817 276 YKAADLFVFASTTETQGLVLLEAM----AAGLPVVAVDAPGLPDLVADGENGFLFPPGDEALAEALLRLLQD 343 (374)
T ss_pred HHHcCEEEecccccCcChHHHHHH----HcCCcEEEeCCCChhhheecCceeEEeCCCCHHHHHHHHHHHhC
Confidence 3467888865432 3444443 238899998875 34777755444788888888764
No 224
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=21.77 E-value=3.7e+02 Score=23.61 Aligned_cols=62 Identities=15% Similarity=0.115 Sum_probs=38.1
Q ss_pred CcEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEEc
Q psy5950 171 PLTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICLG 250 (511)
Q Consensus 171 p~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvLG 250 (511)
|..|.|+.-..+++....+.+++..|+. .++.|.++.. . .+.+++... ....+.++|++|
T Consensus 26 p~~v~Ii~~~~~~~~~~~a~~la~~LR~-~gi~v~~d~~-~------------sl~kqlk~A------~k~g~~~~iiiG 85 (121)
T cd00858 26 PIKVAVLPLVKRDELVEIAKEISEELRE-LGFSVKYDDS-G------------SIGRRYARQ------DEIGTPFCVTVD 85 (121)
T ss_pred CcEEEEEecCCcHHHHHHHHHHHHHHHH-CCCEEEEeCC-C------------CHHHHHHHh------HhcCCCEEEEEC
Confidence 5577777743236677788899999985 4667665532 1 111222211 135678999999
Q ss_pred Cc
Q psy5950 251 GD 252 (511)
Q Consensus 251 GD 252 (511)
.+
T Consensus 86 ~~ 87 (121)
T cd00858 86 FD 87 (121)
T ss_pred cC
Confidence 76
No 225
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=21.62 E-value=1.5e+02 Score=28.28 Aligned_cols=34 Identities=26% Similarity=0.199 Sum_probs=21.6
Q ss_pred CccEEEEEcCchh-----------HHHHHHHcCCCCCcEEEEeCC
Q psy5950 242 KIDFIICLGGDGT-----------LLYASLLFQQSVPPVMAFHLG 275 (511)
Q Consensus 242 ~~DlVIvLGGDGT-----------lL~Aar~~~~~~~PILGINlG 275 (511)
++|.||.-||..+ +....+.+...+.|||||-.|
T Consensus 36 ~~d~iiipG~~~~~~~~~~~~~~~~~~~i~~~~~~~~pilGiC~G 80 (198)
T cd01748 36 SADKLILPGVGAFGDAMANLRERGLIEALKEAIASGKPFLGICLG 80 (198)
T ss_pred cCCEEEECCCCcHHHHHHHHHHcChHHHHHHHHHCCCcEEEECHH
Confidence 5788888554211 233444444568899999977
No 226
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=21.51 E-value=80 Score=27.75 Aligned_cols=32 Identities=38% Similarity=0.580 Sum_probs=25.6
Q ss_pred ecCeeEEcCCCchhHHHhhcCCCccCCCCCceEEEE
Q psy5950 361 QGDGLIVSTPTGSTAYAVAAGASMIHPSVPAIMVTP 396 (511)
Q Consensus 361 rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~aivITP 396 (511)
.+..|||-|-+|.||-.+|-- -|.++.+.+||
T Consensus 16 ~ak~Ivv~T~sG~ta~~isk~----RP~~pIiavt~ 47 (117)
T PF02887_consen 16 NAKAIVVFTESGRTARLISKY----RPKVPIIAVTP 47 (117)
T ss_dssp TESEEEEE-SSSHHHHHHHHT-----TSSEEEEEES
T ss_pred CCCEEEEECCCchHHHHHHhh----CCCCeEEEEcC
Confidence 467899999999999999964 47788888886
No 227
>TIGR00432 arcsn_tRNA_tgt tRNA-guanine transglycosylase, archaeosine-15-forming. This tRNA-guanine transglycosylase (tgt) differs from the tgt of E. coli and other Bacteria in the site of action and the modification that results. It exchanges 7-cyano-7-deazaguanine (preQ0) with guanine at position 15 of archaeal tRNA; this nucleotide is subsequently converted to archaeosine, found exclusively in the Archaea. This enzyme from Haloferax volcanii has been purified, characterized, and partially sequenced and is the basis for identifying this family. In contrast, bacterial tgt catalyzes the exchange of preQ0 or preQ1 for the guanine base at position 34; this nucleotide is subsequently modified to queuosine. Archeoglobus fulgidus has both enzymes, while some other Archaea have just this one.
Probab=21.23 E-value=1.8e+02 Score=33.17 Aligned_cols=42 Identities=26% Similarity=0.525 Sum_probs=29.6
Q ss_pred eeEEeecCC-CCcEEEEEEEECCEEEEEEe-cCeeEEcCCCchhHH
Q psy5950 333 NEVVIDRGP-SPYLSNIDLYLDGKLITSVQ-GDGLIVSTPTGSTAY 376 (511)
Q Consensus 333 NEVvI~Rg~-~~~~~~i~v~idg~~v~~~r-gDGLIVSTPTGSTAY 376 (511)
+++.|.++. .+++ . .|+.+|+.+.+++ .||++.-|+.|.--.
T Consensus 415 ~~~~v~~s~~tgr~-r-~v~~~~~~l~t~r~~dg~l~lt~~Ga~~l 458 (540)
T TIGR00432 415 SDVRIERSRNTGKI-R-HIYAGDELICTMRASDGLLVLGAEGAVRL 458 (540)
T ss_pred CCcEEEEeccCCcc-e-EEEECCEEEEEEEcCCCeEEeCHHHHHHH
Confidence 677776542 3444 2 6788999988886 599999998775433
No 228
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=21.02 E-value=1.1e+02 Score=33.07 Aligned_cols=55 Identities=24% Similarity=0.383 Sum_probs=37.3
Q ss_pred CCccEEEEEcCchhHHHHHHHcCCCCCcEEEEeC-C----------C--ccc-c--ccCCcccHHHHHHHHHcCC
Q psy5950 241 DKIDFIICLGGDGTLLYASLLFQQSVPPVMAFHL-G----------S--LGF-L--TPFEFENFEDQVTNVLEGH 299 (511)
Q Consensus 241 ~~~DlVIvLGGDGTlL~Aar~~~~~~~PILGINl-G----------~--LGF-L--t~~~~~~~~~~L~~il~G~ 299 (511)
.++++.|+=||-|+++.|+.. ++|++++-+ | . +|- | .+++.+++.++|+++++++
T Consensus 340 p~v~~fitHgG~~s~~Ea~~~----gvP~l~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~vl~~~ 410 (500)
T PF00201_consen 340 PRVKLFITHGGLNSTQEALYH----GVPMLGIPLFGDQPRNAARVEEKGVGVVLDKNDLTEEELRAAIREVLENP 410 (500)
T ss_dssp TTEEEEEES--HHHHHHHHHC----T--EEE-GCSTTHHHHHHHHHHTTSEEEEGGGC-SHHHHHHHHHHHHHSH
T ss_pred ccceeeeeccccchhhhhhhc----cCCccCCCCcccCCccceEEEEEeeEEEEEecCCcHHHHHHHHHHHHhhh
Confidence 568999999999999999865 899999865 1 1 232 2 2556788999999998865
No 229
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=21.00 E-value=4.6e+02 Score=21.34 Aligned_cols=83 Identities=16% Similarity=0.133 Sum_probs=43.3
Q ss_pred EEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEEcCch
Q psy5950 174 VLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICLGGDG 253 (511)
Q Consensus 174 VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvLGGDG 253 (511)
|+|+.-.+-....-...+|-+++.+. ++...+... + + . +...+++|+||+
T Consensus 2 ilvvC~~G~~tS~ll~~kl~~~f~~~-~i~~~~~~~--~---~-------------~------~~~~~~~DlIis----- 51 (86)
T cd05563 2 ILAVCGSGLGSSLMLKMNVEKVLKEL-GIEAEVEHT--D---L-------------G------SAKASSADIIVT----- 51 (86)
T ss_pred EEEECCCCccHHHHHHHHHHHHHHHC-CCcEEEEEe--c---c-------------c------ccCCCCCCEEEE-----
Confidence 67777655444444556888888644 333222110 0 0 0 001346899986
Q ss_pred hHHHHHHHcCCCCCcEEEEeCCCccccccCCcccHHHHHHH
Q psy5950 254 TLLYASLLFQQSVPPVMAFHLGSLGFLTPFEFENFEDQVTN 294 (511)
Q Consensus 254 TlL~Aar~~~~~~~PILGINlG~LGFLt~~~~~~~~~~L~~ 294 (511)
|. ..........+|+++|+.+ ++.+++++.|..
T Consensus 52 T~-~l~~~~~~~~~~~i~v~~~-------l~~~d~~~~~~~ 84 (86)
T cd05563 52 SK-DLASLLADGGAKVIGLKNI-------MDKNEIKEKLLE 84 (86)
T ss_pred ch-hhhhhhccCCceEEEEecc-------CCHHHHHHHHHh
Confidence 22 2222222346788888754 455666666554
No 230
>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=20.96 E-value=1e+02 Score=28.37 Aligned_cols=36 Identities=25% Similarity=0.299 Sum_probs=27.0
Q ss_pred CCccEEEEEcCchh--------HHHHHHHcCCCCCcEEEEeCCC
Q psy5950 241 DKIDFIICLGGDGT--------LLYASLLFQQSVPPVMAFHLGS 276 (511)
Q Consensus 241 ~~~DlVIvLGGDGT--------lL~Aar~~~~~~~PILGINlG~ 276 (511)
..+|++|+.||.+. ++...+.+.....+|.++..|.
T Consensus 61 ~~~D~lvipgg~~~~~~~~~~~~~~~l~~~~~~~k~i~aic~g~ 104 (183)
T cd03139 61 PDLDVLLVPGGGGTRALVNDPALLDFIRRQAARAKYVTSVCTGA 104 (183)
T ss_pred CCCCEEEECCCcchhhhccCHHHHHHHHHhcccCCEEEEEchHH
Confidence 36899999999765 4444555556788999998884
No 231
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=20.46 E-value=2.3e+02 Score=27.84 Aligned_cols=60 Identities=12% Similarity=0.043 Sum_probs=41.9
Q ss_pred ccEEEE-E---cCchh-HH-HHHHHcCCCCCcEEEEeC-------------CCccccc-cCCcccHHHHHHHHHcCCcEE
Q psy5950 243 IDFIIC-L---GGDGT-LL-YASLLFQQSVPPVMAFHL-------------GSLGFLT-PFEFENFEDQVTNVLEGHAAL 302 (511)
Q Consensus 243 ~DlVIv-L---GGDGT-lL-~Aar~~~~~~~PILGINl-------------G~LGFLt-~~~~~~~~~~L~~il~G~~~i 302 (511)
+|+||. + |+||. ++ ...+.. ...+||+-++. |--||+. +.+++++.++|..+.+|+..+
T Consensus 53 ~DvvllDi~~p~~~G~~~~~~~i~~~-~p~~~vvvlt~~~~~~~~~~~~~~Ga~G~l~K~~~~~~L~~aI~~v~~G~~~~ 131 (216)
T PRK10100 53 GSIILLDMMEADKKLIHYWQDTLSRK-NNNIKILLLNTPEDYPYREIENWPHINGVFYAMEDQERVVNGLQGVLRGECYF 131 (216)
T ss_pred CCEEEEECCCCCccHHHHHHHHHHHh-CCCCcEEEEECCchhHHHHHHHhcCCeEEEECCCCHHHHHHHHHHHHcCCccc
Confidence 787776 2 67886 22 223332 23568887775 7778876 677899999999999998655
Q ss_pred E
Q psy5950 303 T 303 (511)
Q Consensus 303 e 303 (511)
.
T Consensus 132 ~ 132 (216)
T PRK10100 132 T 132 (216)
T ss_pred C
Confidence 3
Done!