Query psy5950
Match_columns 511
No_of_seqs 241 out of 1649
Neff 4.9
Searched_HMMs 29240
Date Fri Aug 16 22:36:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5950.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5950hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pfn_A NAD kinase; structural 100.0 5.5E-91 1.9E-95 721.2 30.0 342 135-477 2-362 (365)
2 3afo_A NADH kinase POS5; alpha 100.0 1.1E-70 3.9E-75 573.7 29.6 324 153-483 21-381 (388)
3 1z0s_A Probable inorganic poly 100.0 1.2E-64 4.1E-69 507.9 24.0 260 160-477 15-277 (278)
4 1u0t_A Inorganic polyphosphate 100.0 1.7E-61 5.7E-66 488.2 29.7 298 170-479 3-302 (307)
5 2an1_A Putative kinase; struct 100.0 3.3E-60 1.1E-64 472.4 27.0 286 171-479 5-290 (292)
6 2i2c_A Probable inorganic poly 100.0 2.5E-58 8.7E-63 457.8 32.4 259 173-480 2-267 (272)
7 1yt5_A Inorganic polyphosphate 100.0 1.2E-57 4E-62 449.8 24.0 218 240-479 39-256 (258)
8 2qv7_A Diacylglycerol kinase D 99.9 2E-23 6.9E-28 211.7 8.5 255 171-460 24-317 (337)
9 2bon_A Lipid kinase; DAG kinas 99.8 1.1E-19 3.8E-24 184.3 7.2 258 171-468 29-324 (332)
10 3s40_A Diacylglycerol kinase; 98.7 1.3E-06 4.3E-11 87.4 21.4 251 169-459 6-298 (304)
11 3l7n_A Putative uncharacterize 88.6 0.55 1.9E-05 44.8 5.7 36 241-276 44-94 (236)
12 4a3s_A 6-phosphofructokinase; 86.4 0.37 1.3E-05 49.0 3.2 52 242-296 93-154 (319)
13 1vlj_A NADH-dependent butanol 86.0 1.4 4.8E-05 45.5 7.5 88 171-274 43-151 (407)
14 1zxx_A 6-phosphofructokinase; 85.8 0.47 1.6E-05 48.3 3.7 53 241-296 92-154 (319)
15 1pfk_A Phosphofructokinase; tr 85.7 0.48 1.6E-05 48.3 3.7 53 241-296 93-155 (320)
16 3hno_A Pyrophosphate-dependent 83.6 0.63 2.2E-05 49.0 3.5 44 241-284 103-161 (419)
17 1o2d_A Alcohol dehydrogenase, 82.9 1.8 6.2E-05 44.1 6.5 89 172-274 41-148 (371)
18 3bfj_A 1,3-propanediol oxidore 81.6 1.8 6.2E-05 44.2 6.0 90 171-274 33-142 (387)
19 2hig_A 6-phospho-1-fructokinas 80.2 0.83 2.8E-05 49.1 3.0 53 242-296 189-256 (487)
20 2f48_A Diphosphate--fructose-6 79.4 0.91 3.1E-05 49.5 3.0 53 241-295 165-234 (555)
21 3hdv_A Response regulator; PSI 79.3 6.6 0.00023 32.1 7.7 59 243-301 53-130 (136)
22 3eod_A Protein HNR; response r 79.2 19 0.00064 29.0 10.5 57 242-299 51-127 (130)
23 3snk_A Response regulator CHEY 79.2 16 0.00055 29.8 10.1 57 241-298 58-133 (135)
24 1oj7_A Hypothetical oxidoreduc 79.1 2.2 7.6E-05 44.0 5.7 74 172-263 51-126 (408)
25 3gt7_A Sensor protein; structu 78.8 9.7 0.00033 32.2 8.9 104 170-300 6-129 (154)
26 3gl9_A Response regulator; bet 78.7 14 0.00047 29.9 9.5 56 242-297 46-121 (122)
27 3otg_A CALG1; calicheamicin, T 78.6 9.3 0.00032 37.6 9.8 58 237-298 303-376 (412)
28 3lua_A Response regulator rece 78.1 17 0.0006 29.7 10.1 61 241-301 49-130 (140)
29 3jzd_A Iron-containing alcohol 78.1 2.1 7.1E-05 43.8 5.0 85 171-274 36-121 (358)
30 3m3p_A Glutamine amido transfe 77.8 2.1 7.2E-05 41.7 4.8 35 241-275 47-91 (250)
31 2o6l_A UDP-glucuronosyltransfe 77.6 2.6 9E-05 36.8 5.0 54 241-298 85-154 (170)
32 3ox4_A Alcohol dehydrogenase 2 77.0 1.7 5.9E-05 44.6 4.1 87 171-274 31-138 (383)
33 3hl0_A Maleylacetate reductase 76.8 2.8 9.4E-05 42.7 5.5 85 171-274 34-119 (353)
34 1rrm_A Lactaldehyde reductase; 76.6 3.2 0.00011 42.3 5.9 87 171-274 31-140 (386)
35 2pln_A HP1043, response regula 76.5 13 0.00044 30.5 8.7 102 167-298 14-133 (137)
36 3qbe_A 3-dehydroquinate syntha 75.7 5.4 0.00018 41.1 7.3 89 172-274 44-137 (368)
37 3ce9_A Glycerol dehydrogenase; 74.3 4.6 0.00016 40.6 6.4 86 171-274 34-120 (354)
38 3f6p_A Transcriptional regulat 73.5 18 0.00062 29.0 8.8 54 242-297 46-118 (120)
39 1xah_A Sadhqs, 3-dehydroquinat 73.1 4.5 0.00015 40.9 5.9 89 172-274 32-124 (354)
40 4dad_A Putative pilus assembly 73.0 13 0.00046 30.7 8.0 105 169-299 18-142 (146)
41 3okf_A 3-dehydroquinate syntha 72.8 8.7 0.0003 39.9 8.1 92 170-274 61-157 (390)
42 3fij_A LIN1909 protein; 11172J 71.9 2.2 7.5E-05 41.2 3.1 35 241-275 60-117 (254)
43 2gru_A 2-deoxy-scyllo-inosose 71.5 9.6 0.00033 38.8 8.0 92 171-274 34-128 (368)
44 4e7p_A Response regulator; DNA 71.0 40 0.0014 28.0 10.7 60 242-302 66-144 (150)
45 3o8l_A 6-phosphofructokinase, 71.0 2.1 7.3E-05 48.3 3.2 55 241-297 488-558 (762)
46 3kto_A Response regulator rece 70.7 26 0.0009 28.6 9.3 59 241-300 49-128 (136)
47 3uhj_A Probable glycerol dehyd 70.2 3.4 0.00012 42.7 4.3 85 172-274 53-138 (387)
48 3lte_A Response regulator; str 70.1 29 0.00099 27.9 9.3 59 242-300 50-127 (132)
49 3t6k_A Response regulator rece 69.7 25 0.00085 29.0 9.0 58 242-299 48-125 (136)
50 3klo_A Transcriptional regulat 69.2 17 0.00057 33.0 8.4 59 242-300 54-131 (225)
51 3opy_B 6-phosphofructo-1-kinas 69.0 2.4 8.3E-05 48.9 3.2 54 241-296 661-730 (941)
52 3cz5_A Two-component response 68.1 43 0.0015 27.8 10.2 60 242-302 51-129 (153)
53 1ka9_H Imidazole glycerol phos 68.1 7.3 0.00025 35.7 5.7 35 242-276 40-85 (200)
54 3hbm_A UDP-sugar hydrolase; PS 68.0 2.2 7.4E-05 42.2 2.2 95 170-273 156-251 (282)
55 3o8o_A 6-phosphofructokinase s 67.9 2.4 8.3E-05 48.0 2.8 54 241-296 482-551 (787)
56 1ujn_A Dehydroquinate synthase 67.9 8.6 0.00029 38.9 6.7 88 171-274 28-118 (348)
57 3o8o_B 6-phosphofructokinase s 67.4 2.3 7.7E-05 48.1 2.5 53 242-296 484-552 (766)
58 3opy_A 6-phosphofructo-1-kinas 67.4 2.7 9.2E-05 48.7 3.1 53 242-296 688-756 (989)
59 3o8l_A 6-phosphofructokinase, 67.0 3.3 0.00011 46.8 3.6 55 242-298 109-195 (762)
60 1dbw_A Transcriptional regulat 66.1 49 0.0017 26.4 10.9 58 242-300 47-123 (126)
61 2qr3_A Two-component system re 64.9 28 0.00094 28.2 8.2 58 242-300 47-128 (140)
62 3cg4_A Response regulator rece 64.5 23 0.0008 28.8 7.7 56 242-297 51-126 (142)
63 3nhm_A Response regulator; pro 64.1 23 0.0008 28.5 7.6 58 242-299 47-123 (133)
64 3o8o_A 6-phosphofructokinase s 64.0 4.4 0.00015 46.0 3.9 54 241-296 98-183 (787)
65 3h5i_A Response regulator/sens 63.3 29 0.00098 28.5 8.1 55 241-297 49-123 (140)
66 3ia7_A CALG4; glycosysltransfe 63.3 28 0.00094 33.8 9.1 57 238-298 293-366 (402)
67 1jq5_A Glycerol dehydrogenase; 63.1 8.4 0.00029 38.9 5.5 85 172-274 32-118 (370)
68 1ta9_A Glycerol dehydrogenase; 63.0 11 0.00038 39.6 6.6 84 172-274 92-177 (450)
69 3jte_A Response regulator rece 62.6 27 0.00093 28.6 7.8 58 241-299 48-124 (143)
70 3iv7_A Alcohol dehydrogenase I 62.6 2.7 9.1E-05 43.1 1.7 33 241-274 87-120 (364)
71 1q7r_A Predicted amidotransfer 62.2 11 0.00038 35.2 5.8 36 241-276 59-104 (219)
72 1srr_A SPO0F, sporulation resp 61.9 38 0.0013 26.9 8.4 57 242-299 47-122 (124)
73 3ewn_A THIJ/PFPI family protei 61.7 28 0.00095 33.6 8.7 99 167-276 20-127 (253)
74 3opy_B 6-phosphofructo-1-kinas 61.6 4.7 0.00016 46.6 3.6 55 242-298 276-362 (941)
75 2qxy_A Response regulator; reg 61.4 51 0.0017 26.8 9.3 57 242-299 48-122 (142)
76 1o1y_A Conserved hypothetical 61.2 7.3 0.00025 37.2 4.4 80 171-276 12-103 (239)
77 4e5v_A Putative THUA-like prot 61.0 20 0.00069 35.4 7.7 92 170-279 3-99 (281)
78 1qo0_D AMIR; binding protein, 60.6 85 0.0029 27.3 11.6 56 242-298 52-125 (196)
79 3kht_A Response regulator; PSI 60.6 48 0.0016 27.1 9.0 56 242-297 51-127 (144)
80 3opy_A 6-phosphofructo-1-kinas 60.4 4.1 0.00014 47.2 2.9 56 241-298 303-390 (989)
81 3clh_A 3-dehydroquinate syntha 60.1 5.3 0.00018 40.3 3.4 32 242-274 85-119 (343)
82 3eqz_A Response regulator; str 59.7 37 0.0013 27.2 8.0 58 243-301 47-128 (135)
83 2ywj_A Glutamine amidotransfer 59.7 17 0.00059 32.6 6.5 35 241-275 36-77 (186)
84 3o8o_B 6-phosphofructokinase s 59.4 4.5 0.00015 45.7 3.0 53 242-296 98-182 (766)
85 2ywd_A Glutamine amidotransfer 59.3 9.8 0.00033 34.2 4.7 34 242-275 39-83 (191)
86 2iss_D Glutamine amidotransfer 58.8 9.9 0.00034 35.1 4.8 35 242-276 57-101 (208)
87 3d54_D Phosphoribosylformylgly 58.6 8.5 0.00029 35.2 4.2 36 241-276 40-89 (213)
88 3cg0_A Response regulator rece 58.2 38 0.0013 27.3 7.9 56 242-299 54-129 (140)
89 3grc_A Sensor protein, kinase; 57.1 39 0.0013 27.5 7.8 58 242-299 50-128 (140)
90 3hdg_A Uncharacterized protein 56.8 17 0.00057 29.6 5.4 57 242-299 51-126 (137)
91 1oi4_A Hypothetical protein YH 56.0 40 0.0014 30.5 8.4 36 241-276 85-128 (193)
92 2gwr_A DNA-binding response re 56.0 46 0.0016 30.3 8.8 56 242-299 49-123 (238)
93 1zgz_A Torcad operon transcrip 55.6 61 0.0021 25.5 8.5 54 242-297 46-118 (122)
94 3cnb_A DNA-binding response re 55.1 63 0.0022 26.0 8.7 58 242-299 54-131 (143)
95 1qdl_B Protein (anthranilate s 54.5 14 0.00047 33.8 4.9 34 242-276 45-87 (195)
96 3q9s_A DNA-binding response re 54.4 47 0.0016 30.8 8.8 56 242-299 81-155 (249)
97 3h1g_A Chemotaxis protein CHEY 54.3 29 0.00098 28.1 6.4 58 242-299 51-128 (129)
98 3noq_A THIJ/PFPI family protei 53.9 36 0.0012 32.2 7.9 97 169-276 3-107 (231)
99 2jba_A Phosphate regulon trans 52.9 82 0.0028 24.8 9.8 57 242-298 46-122 (127)
100 3tsa_A SPNG, NDP-rhamnosyltran 52.2 14 0.00047 36.2 4.8 59 236-298 280-356 (391)
101 1sg6_A Pentafunctional AROM po 52.1 23 0.00078 36.3 6.6 31 243-274 106-139 (393)
102 2p6p_A Glycosyl transferase; X 51.9 11 0.00037 37.0 4.0 58 237-298 274-347 (384)
103 1qkk_A DCTD, C4-dicarboxylate 51.7 98 0.0033 25.6 9.6 56 242-298 47-121 (155)
104 3to5_A CHEY homolog; alpha(5)b 50.8 24 0.00084 30.6 5.7 56 242-297 57-132 (134)
105 1l9x_A Gamma-glutamyl hydrolas 50.5 2.6 9E-05 42.2 -0.7 36 241-276 85-134 (315)
106 3s2u_A UDP-N-acetylglucosamine 50.4 9.9 0.00034 37.9 3.5 58 238-299 248-325 (365)
107 2oqr_A Sensory transduction pr 50.1 83 0.0028 28.1 9.4 56 242-299 48-122 (230)
108 1p2f_A Response regulator; DRR 49.6 62 0.0021 28.8 8.5 58 241-299 42-118 (220)
109 1tvm_A PTS system, galactitol- 49.5 56 0.0019 27.6 7.6 98 164-297 14-112 (113)
110 3rsc_A CALG2; TDP, enediyne, s 48.2 48 0.0016 32.6 8.1 57 238-298 309-381 (415)
111 3i42_A Response regulator rece 48.1 59 0.002 25.9 7.3 58 242-299 47-123 (127)
112 3hv2_A Response regulator/HD d 47.7 77 0.0026 26.3 8.3 56 242-298 58-133 (153)
113 4fzr_A SSFS6; structural genom 47.6 18 0.00062 35.6 4.9 58 237-298 295-368 (398)
114 1dcf_A ETR1 protein; beta-alph 47.5 1.1E+02 0.0037 24.6 9.5 56 244-299 52-130 (136)
115 2rdm_A Response regulator rece 47.4 1E+02 0.0035 24.4 9.8 58 242-300 50-125 (132)
116 1kgs_A DRRD, DNA binding respo 46.8 85 0.0029 27.8 8.9 56 242-298 46-120 (225)
117 3ff4_A Uncharacterized protein 46.6 36 0.0012 29.4 6.1 89 169-275 2-91 (122)
118 2rjn_A Response regulator rece 46.5 1.2E+02 0.0041 25.0 9.4 56 242-298 51-126 (154)
119 3heb_A Response regulator rece 46.4 74 0.0025 26.3 8.0 57 241-297 58-134 (152)
120 3crn_A Response regulator rece 46.4 65 0.0022 26.0 7.5 56 242-298 47-121 (132)
121 2gkg_A Response regulator homo 45.8 1E+02 0.0036 23.9 8.6 56 242-297 49-124 (127)
122 4e08_A DJ-1 beta; flavodoxin-l 45.5 1.1E+02 0.0038 27.3 9.5 37 241-277 66-111 (190)
123 3c97_A Signal transduction his 44.7 36 0.0012 27.8 5.6 60 242-301 54-133 (140)
124 2a9v_A GMP synthase; structura 44.3 10 0.00035 35.4 2.4 35 242-276 54-95 (212)
125 3rqi_A Response regulator prot 43.6 48 0.0016 28.9 6.6 55 242-297 51-124 (184)
126 2yjn_A ERYCIII, glycosyltransf 43.6 19 0.00065 36.3 4.4 58 237-298 330-403 (441)
127 2qzj_A Two-component response 42.9 97 0.0033 25.2 8.1 55 242-298 48-121 (136)
128 3f6c_A Positive transcription 42.6 49 0.0017 26.5 6.1 59 242-301 46-123 (134)
129 3lkv_A Uncharacterized conserv 42.2 26 0.00089 33.8 5.0 111 170-299 139-261 (302)
130 2w7t_A CTP synthetase, putativ 41.2 17 0.00059 35.4 3.5 36 241-276 66-106 (273)
131 3kcn_A Adenylate cyclase homol 41.1 69 0.0024 26.5 6.9 55 243-298 49-123 (151)
132 2zay_A Response regulator rece 40.8 1.2E+02 0.004 24.7 8.3 57 242-298 52-128 (147)
133 2r25_B Osmosensing histidine p 40.1 51 0.0017 26.9 5.8 56 242-297 52-126 (133)
134 2iuf_A Catalase; oxidoreductas 40.1 59 0.002 36.4 7.9 92 167-275 525-641 (688)
135 3r75_A Anthranilate/para-amino 39.9 30 0.001 38.2 5.6 35 242-276 486-531 (645)
136 1a9x_B Carbamoyl phosphate syn 39.9 31 0.0011 35.7 5.3 35 242-276 231-271 (379)
137 3b2n_A Uncharacterized protein 39.9 55 0.0019 26.5 6.0 59 242-301 49-126 (133)
138 3nva_A CTP synthase; rossman f 39.7 45 0.0015 36.3 6.6 36 240-275 348-388 (535)
139 2iyf_A OLED, oleandomycin glyc 39.6 29 0.00098 34.5 4.9 57 238-298 295-367 (430)
140 1yio_A Response regulatory pro 39.6 1.7E+02 0.0058 25.5 9.6 56 242-298 48-122 (208)
141 1ys7_A Transcriptional regulat 39.6 1.3E+02 0.0043 26.8 8.9 57 242-299 51-126 (233)
142 1s8n_A Putative antiterminator 39.4 87 0.003 27.5 7.7 55 242-298 58-131 (205)
143 1k68_A Phytochrome response re 39.4 1.4E+02 0.0048 23.6 9.5 57 241-297 54-130 (140)
144 3eul_A Possible nitrate/nitrit 38.9 55 0.0019 27.1 5.9 61 242-303 61-140 (152)
145 2iya_A OLEI, oleandomycin glyc 38.5 30 0.001 34.4 4.9 57 238-298 317-389 (424)
146 1rrv_A Glycosyltransferase GTF 36.6 31 0.0011 34.3 4.7 55 237-295 297-367 (416)
147 2lpm_A Two-component response 36.6 8.1 0.00028 33.4 0.3 52 242-296 53-120 (123)
148 1wl8_A GMP synthase [glutamine 36.1 18 0.0006 32.7 2.5 35 242-276 43-82 (189)
149 2ayx_A Sensor kinase protein R 35.8 1.5E+02 0.0052 27.5 9.1 55 242-297 173-246 (254)
150 3c3m_A Response regulator rece 35.6 1.7E+02 0.0059 23.5 8.9 58 242-299 47-124 (138)
151 3ot1_A 4-methyl-5(B-hydroxyeth 35.2 1.1E+02 0.0037 28.0 7.8 42 241-282 70-120 (208)
152 3hzh_A Chemotaxis response reg 35.1 73 0.0025 26.7 6.2 55 242-297 83-156 (157)
153 1kq3_A Glycerol dehydrogenase; 35.0 24 0.00082 35.7 3.5 32 242-274 94-126 (376)
154 3n0r_A Response regulator; sig 34.4 1.1E+02 0.0037 29.5 8.0 55 242-298 205-277 (286)
155 1a04_A Nitrate/nitrite respons 34.2 1.5E+02 0.0051 26.1 8.4 57 242-299 51-126 (215)
156 1iir_A Glycosyltransferase GTF 34.2 36 0.0012 33.9 4.7 56 238-298 297-368 (415)
157 2qsj_A DNA-binding response re 33.5 75 0.0026 26.2 5.9 60 242-302 50-128 (154)
158 3n53_A Response regulator rece 33.1 55 0.0019 26.6 4.9 58 242-299 46-123 (140)
159 2j48_A Two-component sensor ki 33.0 90 0.0031 23.7 6.0 57 242-298 45-118 (119)
160 3mm4_A Histidine kinase homolo 32.4 1.1E+02 0.0038 27.3 7.3 56 242-299 119-197 (206)
161 2hqr_A Putative transcriptiona 31.9 74 0.0025 28.3 6.0 56 242-299 44-116 (223)
162 1dz3_A Stage 0 sporulation pro 31.8 1E+02 0.0035 24.5 6.4 58 242-299 48-124 (130)
163 2jjm_A Glycosyl transferase, g 31.4 86 0.0029 30.4 6.8 122 170-298 210-350 (394)
164 3r0j_A Possible two component 30.7 1.5E+02 0.005 27.1 7.9 56 242-298 67-141 (250)
165 2f9f_A First mannosyl transfer 30.6 54 0.0018 28.5 4.7 55 240-298 95-162 (177)
166 3h4t_A Glycosyltransferase GTF 30.6 44 0.0015 33.3 4.6 57 237-297 279-351 (404)
167 1mb3_A Cell division response 29.9 1.5E+02 0.0052 23.0 7.0 58 242-299 45-122 (124)
168 1mvo_A PHOP response regulator 29.8 2.1E+02 0.0071 22.7 8.7 57 242-299 47-122 (136)
169 2nv0_A Glutamine amidotransfer 29.3 18 0.00063 32.7 1.4 35 242-276 38-82 (196)
170 3ilh_A Two component response 29.3 1.1E+02 0.0038 24.6 6.2 60 241-300 59-141 (146)
171 3l49_A ABC sugar (ribose) tran 28.5 83 0.0029 29.0 5.9 113 169-297 3-120 (291)
172 3m6m_D Sensory/regulatory prot 27.5 97 0.0033 25.5 5.6 57 242-298 58-136 (143)
173 1vhq_A Enhancing lycopene bios 27.2 29 0.00098 32.6 2.4 37 241-277 89-144 (232)
174 1i1q_B Anthranilate synthase c 26.6 18 0.00061 32.8 0.8 32 244-276 49-86 (192)
175 3rf7_A Iron-containing alcohol 25.3 37 0.0013 34.8 2.9 32 242-274 109-159 (375)
176 3lft_A Uncharacterized protein 25.3 2E+02 0.0068 26.9 7.9 110 170-299 132-254 (295)
177 4evq_A Putative ABC transporte 25.2 1.6E+02 0.0055 28.1 7.4 88 169-272 149-238 (375)
178 2iz6_A Molybdenum cofactor car 25.1 3.9E+02 0.013 24.3 10.4 102 171-274 13-139 (176)
179 3td9_A Branched chain amino ac 24.7 2.3E+02 0.0078 27.0 8.4 86 170-272 148-236 (366)
180 3ttv_A Catalase HPII; heme ori 24.5 1.6E+02 0.0056 33.2 8.1 98 167-275 596-701 (753)
181 1gpw_B Amidotransferase HISH; 24.0 22 0.00076 32.3 0.9 35 241-275 41-86 (201)
182 2h0a_A TTHA0807, transcription 23.9 2.9E+02 0.0098 25.0 8.6 106 174-297 2-111 (276)
183 1jvn_A Glutamine, bifunctional 23.6 96 0.0033 33.3 5.9 35 241-275 43-88 (555)
184 3l6u_A ABC-type sugar transpor 23.3 90 0.0031 28.8 5.0 112 170-297 7-125 (293)
185 3jy6_A Transcriptional regulat 22.8 2.9E+02 0.0099 25.1 8.4 112 169-298 5-121 (276)
186 3g85_A Transcriptional regulat 22.8 3.1E+02 0.011 25.0 8.7 111 169-297 9-124 (289)
187 1i3c_A Response regulator RCP1 22.1 1.6E+02 0.0056 24.1 6.0 56 242-297 61-136 (149)
188 1k66_A Phytochrome response re 22.0 90 0.0031 25.2 4.3 57 241-297 61-137 (149)
189 1u9c_A APC35852; structural ge 21.7 48 0.0016 30.5 2.7 37 241-277 88-133 (224)
190 2rk3_A Protein DJ-1; parkinson 21.6 56 0.0019 29.5 3.1 36 241-276 65-109 (197)
191 4eys_A MCCC family protein; MC 21.6 70 0.0024 32.4 4.1 93 170-273 4-112 (346)
192 2b4a_A BH3024; flavodoxin-like 21.1 3.2E+02 0.011 21.8 8.4 56 242-298 60-131 (138)
193 3f5d_A Protein YDEA; unknow pr 21.0 45 0.0015 30.9 2.4 39 238-276 59-103 (206)
194 3ej6_A Catalase-3; heme, hydro 20.8 2.1E+02 0.0072 32.0 8.0 88 170-275 536-639 (688)
195 3l18_A Intracellular protease 20.1 54 0.0018 28.6 2.6 36 241-276 62-105 (168)
No 1
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=100.00 E-value=5.5e-91 Score=721.21 Aligned_cols=342 Identities=66% Similarity=1.118 Sum_probs=299.9
Q ss_pred CCCCCccCCccccccCCceeeeecCCCccccccCCCCcEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccc
Q psy5950 135 PSPIQQFGPCGRIMKNSAMVMTIQDPASQRLTWYKPPLTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDT 214 (511)
Q Consensus 135 p~p~~~~~p~~~l~~~~~~~~~~~~~~~~~l~w~~~p~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~ 214 (511)
|+|+++||||+|+|+||.++||+|+|++|+|+|.++|++|+||+|++++++.+.+.+|++||.++ +++||+|++++++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~w~~~~k~I~iv~K~~~~~~~~~~~~l~~~L~~~-~~~V~ve~~~~~~~ 80 (365)
T 3pfn_A 2 PCPVTTFGPKACVLQNPQTIMHIQDPASQRLTWNKSPKSVLVIKKMRDASLLQPFKELCTHLMEE-NMIVYVEKKVLEDP 80 (365)
T ss_dssp ----CEETTTEEECCCTTTEEEEECTTTCBEEESSCCCEEEEEECTTCGGGHHHHHHHHHHHHHT-SCEEEEEHHHHHSH
T ss_pred CCCccccCCceeecCCchhceeecCccccccccCCCCCEEEEEecCCCHHHHHHHHHHHHHHHHC-CCEEEEehHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999975 79999999888754
Q ss_pred cccCCCCccccccccccccCCCCCCCCCccEEEEEcCchhHHHHHHHcCCCCCcEEEEeCCCccccccCCcccHHHHHHH
Q psy5950 215 LLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICLGGDGTLLYASLLFQQSVPPVMAFHLGSLGFLTPFEFENFEDQVTN 294 (511)
Q Consensus 215 ~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvLGGDGTlL~Aar~~~~~~~PILGINlG~LGFLt~~~~~~~~~~L~~ 294 (511)
.+..+..|...++++..+....+++.+++|+||+||||||||+|||++++.++||||||+|+||||+++++++++++|++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlvI~lGGDGT~L~aa~~~~~~~~PvlGiN~G~LGFLt~~~~~~~~~~l~~ 160 (365)
T 3pfn_A 81 AIASDESFGAVKKKFCTFREDYDDISNQIDFIICLGGDGTLLYASSLFQGSVPPVMAFHLGSLGFLTPFSFENFQSQVTQ 160 (365)
T ss_dssp HHHHCSTTHHHHHHCEEECTTTCCCTTTCSEEEEESSTTHHHHHHHHCSSSCCCEEEEESSSCTTTCCEESTTHHHHHHH
T ss_pred ccccccccccccccccccccChhhcccCCCEEEEEcChHHHHHHHHHhccCCCCEEEEcCCCCccceeecHHHHHHHHHH
Confidence 33333334333333334434456778899999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCcEEEEEeeEEEEEEeCCccc-------------------ccCCCCCCccceeeeEEeecCCCCcEEEEEEEECCE
Q psy5950 295 VLEGHAALTLRSRLRCIIMRKNEET-------------------AKDAKPPTNILVLNEVVIDRGPSPYLSNIDLYLDGK 355 (511)
Q Consensus 295 il~G~~~ie~R~rL~v~V~~~~~~~-------------------~~~~~~~~~~~ALNEVvI~Rg~~~~~~~i~v~idg~ 355 (511)
+++|+|.+++|+||+|++.+..... ...+.....++|||||+|.|+..++|++++|++||+
T Consensus 161 vl~g~~~v~~R~~L~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ALNEvvI~r~~~~~m~~~~v~idg~ 240 (365)
T 3pfn_A 161 VIEGNAAVVLRSRLKVRVVKELRGKKTAVHNGLGEKGSQAAGLDMDVGKQAMQYQVLNEVVIDRGPSSYLSNVDVYLDGH 240 (365)
T ss_dssp HHHSCCBEEEECCEEEEEEC-----------------------------CEEEEEESSEEEEECTTCSSCCCEEEEETTE
T ss_pred HHcCCCeEEEEeeEEEEEEeccccccccccccccccccccccccccCCceeeccCccceEEEecCCCCcEEEEEEEECCE
Confidence 9999999999999999997531000 000111235789999999999999999999999999
Q ss_pred EEEEEecCeeEEcCCCchhHHHhhcCCCccCCCCCceEEEEcCCCCCCCCCEEeCCCCEEEEEEccCCCCeEEEEEcCCc
Q psy5950 356 LITSVQGDGLIVSTPTGSTAYAVAAGASMIHPSVPAIMVTPICPHSLSFRPIVVPAGVELKISVSPDSRNTAWVSFDGRN 435 (511)
Q Consensus 356 ~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~aivITPIcPhsLs~RPiVlp~~~~I~I~v~~~sr~~a~v~iDG~~ 435 (511)
++++|+||||||||||||||||||||||||||++++|+|||||||+|++||+|||++++|+|++..+++..+++++||+.
T Consensus 241 ~~~~~~aDGlIVSTPTGSTAYslSAGGPIv~P~~~~i~ltPI~PhsLs~RPiVlp~~~~I~i~v~~~~~~~~~vs~DG~~ 320 (365)
T 3pfn_A 241 LITTVQGDGVIVSTPTGSTAYAAAAGASMIHPNVPAIMITPICPHSLSFRPIVVPAGVELKIMLSPEARNTAWVSFDGRK 320 (365)
T ss_dssp EEEEECSSEEEEECGGGGGTHHHHTTCCEECTTSCCEEEEEESCSSTTCCCEEECTTCCEEEEECTTCSSCEEEEETTEE
T ss_pred EEEEEecCeEEEeCCccHHHHHHhCCCCccCCCCCeEEEEeccCCccCCCceEECCCCEEEEEEccCCCCcEEEEEcCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999998776767999999999
Q ss_pred eeecCCCCEEEEEEcCceeeEEEecCCCCcHHHHHHhhcCCC
Q psy5950 436 RQELLHGDSLRVTTSIYPVPSICAQDQIADWFDSLGECLHWN 477 (511)
Q Consensus 436 ~~~L~~Gd~V~I~~S~~~l~lI~~~~~~~~~f~~Lr~KL~Wg 477 (511)
..+|.+||+|+|++|++++++|+++++.+|||++|++|||--
T Consensus 321 ~~~l~~gd~V~I~~s~~~~~li~~~~~~~d~f~~l~~~~~~~ 362 (365)
T 3pfn_A 321 RQEIRHGDSISITTSCYPLPSICVRDPVSDWFESLAQCLHHH 362 (365)
T ss_dssp EEEECTTCEEEEEECSSCEEEECSSCHHHHHHHHHHHHTTC-
T ss_pred eeecCCCCEEEEEECCCceEEEEeCCCCCCHHHHHHHHHhhh
Confidence 999999999999999999999999888899999999999853
No 2
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-70 Score=573.70 Aligned_cols=324 Identities=32% Similarity=0.583 Sum_probs=261.7
Q ss_pred eeeeecCCCc--cccccCCCCcEEEEEecCCChhhHHHHHHHHHHHHhcC-CeEEEEcCCccccccccCCCCcccccccc
Q psy5950 153 MVMTIQDPAS--QRLTWYKPPLTVLVIKKVRDVSVLQPFVKLVKWLIQEK-SMLVYVEQSVMDDTLLATNPSFTVVKDKL 229 (511)
Q Consensus 153 ~~~~~~~~~~--~~l~w~~~p~~VlII~K~~~~~~~~~~~el~~~L~~~~-~~~V~ve~~~~~~~~l~~~~~f~~~~~~l 229 (511)
.-++++.|.+ ++|.|.+++++|+||+|+.++++.+.+.++++||.+++ +++|++++..++..... ...+.......
T Consensus 21 ~~~~~~~~~~~~~~~~w~~~~k~V~II~n~~~~~~~~~~~~l~~~L~~~~~gi~V~ve~~~a~~l~~~-~~~~~~~~~~~ 99 (388)
T 3afo_A 21 SADFVSPPNSKLQSLIWQNPLQNVYITKKPWTPSTREAMVEFITHLHESYPEVNVIVQPDVAEEISQD-FKSPLENDPNR 99 (388)
T ss_dssp CCEEEC----CCEEEECSSCCCEEEEEECTTCHHHHHHHHHHHHHHHHHCTTCEEECCHHHHHHHHTT-CCSCGGGCTTS
T ss_pred CcceEeCcchhheeeEccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCeEEEEeCchhhhhhhh-ccccccccccc
Confidence 3446677777 78999999999999999999999999999999998752 78999987655432100 00000000000
Q ss_pred c--cccCCCCCCCCCccEEEEEcCchhHHHHHHHcCCCCC-cEEEEeCCCccccccCCcccHHHHHHHHHcCCcEEEEEe
Q psy5950 230 M--TFRDGKDDLTDKIDFIICLGGDGTLLYASLLFQQSVP-PVMAFHLGSLGFLTPFEFENFEDQVTNVLEGHAALTLRS 306 (511)
Q Consensus 230 ~--~~~~~~~~~~~~~DlVIvLGGDGTlL~Aar~~~~~~~-PILGINlG~LGFLt~~~~~~~~~~L~~il~G~~~ie~R~ 306 (511)
. .+....++..+++|+||+||||||||+|++.+...++ ||||||+|+||||+++++++++++|+++++|+|.+++|+
T Consensus 100 ~~~~~~~~~~~~~~~~DlVIvlGGDGTlL~aa~~~~~~~vpPiLGIN~G~lGFLt~~~~~~~~~al~~il~g~~~~~~r~ 179 (388)
T 3afo_A 100 PHILYTGPEQDIVNRTDLLVTLGGDGTILHGVSMFGNTQVPPVLAFALGTLGFLSPFDFKEHKKVFQEVISSRAKCLHRT 179 (388)
T ss_dssp CEEEEECCHHHHHHHCSEEEEEESHHHHHHHHHTTTTSCCCCEEEEECSSCCSSCCEEGGGHHHHHHHHHTTCCEEEEEC
T ss_pred cccccccchhhcccCCCEEEEEeCcHHHHHHHHHhcccCCCeEEEEECCCcccCCcCChHHHHHHHHHHhcCCceEEEee
Confidence 0 0000112233568999999999999999999987775 899999999999999999999999999999999999999
Q ss_pred eEEEEEEeCCcccccCCCCCCccceeeeEEeecCCCCcEEEEEEEECCEEEEEEecCeeEEcCCCchhHHHhhcCCCccC
Q psy5950 307 RLRCIIMRKNEETAKDAKPPTNILVLNEVVIDRGPSPYLSNIDLYLDGKLITSVQGDGLIVSTPTGSTAYAVAAGASMIH 386 (511)
Q Consensus 307 rL~v~V~~~~~~~~~~~~~~~~~~ALNEVvI~Rg~~~~~~~i~v~idg~~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~ 386 (511)
||+|++.++++.. ....+|||||+|.|+..++|++++++|||+++++|+|||||||||||||||||||||||||
T Consensus 180 ~L~~~v~~~~~~~------~~~~~ALNev~i~~~~~~~~~~~~v~id~~~~~~~~~DGliVsTPTGSTAYslSAGGpIv~ 253 (388)
T 3afo_A 180 RLECHLKKKDSNS------SIVTHAMNDIFLHRGNSPHLTNLDIFIDGEFLTRTTADGVALATPTGSTAYSLSAGGSIVS 253 (388)
T ss_dssp CEEEEEECTTCCC------CEEEEESSEEEEECTTCSSCEEEEEEETTEEEEEEEEEEEEEECTGGGGTHHHHTTCCEEC
T ss_pred EEEEEEEeCCccc------hhhheeeceEEEecCCCCcEEEEEEEECCEEEEeecCCeEEEeCCCcHHHHHHhccCCccc
Confidence 9999998654321 1246899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEcCCCCCCCCCEEeCCCCEEEEEEccCC-----CCeEEEEEcCCceeecCCCCEEEEEEcCcee-------
Q psy5950 387 PSVPAIMVTPICPHSLSFRPIVVPAGVELKISVSPDS-----RNTAWVSFDGRNRQELLHGDSLRVTTSIYPV------- 454 (511)
Q Consensus 387 P~v~aivITPIcPhsLs~RPiVlp~~~~I~I~v~~~s-----r~~a~v~iDG~~~~~L~~Gd~V~I~~S~~~l------- 454 (511)
|.+++|+|||||||+|++||||+|++++|+|++.... +..+++++||+...++.+||+|.|+++++++
T Consensus 254 P~~~~~~ltPI~Ph~l~~RpiVl~~~~~i~i~v~~~~~~~~~~~~~~l~~DG~~~~~l~~gd~v~v~~s~~~~~~~~~~~ 333 (388)
T 3afo_A 254 PLVPAILMTPICPRSLSFRPLILPHSSHIRIKIGSKLNQKPVNSVVKLSVDGIPQQDLDVGDEIYVINEVGTIYIDGTQL 333 (388)
T ss_dssp TTSCEEEEEEEEESCSCCCCEEEETTCCEEEEECCCSSCSCSSSCEEEEETTEEEEEECTTCEEEEEESSCCCCCTTC--
T ss_pred CCCCceEEeeecCCcccCCCeEECCCCEEEEEEccccccccccccEEEEEcCCcceecCCCCEEEEEECCceeeeccccc
Confidence 9999999999999999999999999999999986542 2458999999999999999999999998766
Q ss_pred -----------eEEEec--------CCCCcHHHHHHhhcCCCcccccc
Q psy5950 455 -----------PSICAQ--------DQIADWFDSLGECLHWNVRKRQK 483 (511)
Q Consensus 455 -----------~lI~~~--------~~~~~~f~~Lr~KL~Wg~r~~qk 483 (511)
++|++. ....+|++.|+++|+||.+.+.+
T Consensus 334 p~~~~~~~~~~~~i~~~~~~~~~~lr~kl~W~~~~~~~l~~n~~~~~~ 381 (388)
T 3afo_A 334 PTTRKTENDFNNSKKPKRSGIYCVAKTENDWIRGINELLGFNSSFRLT 381 (388)
T ss_dssp ----------------CCCSEEEECSSTTHHHHHHHHTTCTTCCCCCC
T ss_pred cccccccccccceeecCCCCceeecccccchhHHHHhhcCCCcccccc
Confidence 223222 23468999999999999987753
No 3
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=100.00 E-value=1.2e-64 Score=507.85 Aligned_cols=260 Identities=24% Similarity=0.420 Sum_probs=224.0
Q ss_pred CCccccccCCC---CcEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCC
Q psy5950 160 PASQRLTWYKP---PLTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGK 236 (511)
Q Consensus 160 ~~~~~l~w~~~---p~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~ 236 (511)
|.+..+.|... .-+|+||.|+.++ +.++.+||++ .++++++++...+
T Consensus 15 ~~~~~~~~~~~~~~~mki~iv~~~~~~-----~~~l~~~L~~-~g~~v~~~~~~~~------------------------ 64 (278)
T 1z0s_A 15 PTTENLYFQGGGGGGMRAAVVYKTDGH-----VKRIEEALKR-LEVEVELFNQPSE------------------------ 64 (278)
T ss_dssp ---------------CEEEEEESSSTT-----HHHHHHHHHH-TTCEEEEESSCCG------------------------
T ss_pred CccceEEEcCCCccceEEEEEeCCcHH-----HHHHHHHHHH-CCCEEEEcccccc------------------------
Confidence 55666777632 1259999998766 6789999986 4778887654221
Q ss_pred CCCCCCccEEEEEcCchhHHHHHHHcCCCCCcEEEEeCCCccccccCCcccHHHHHHHHHcCCcEEEEEeeEEEEEEeCC
Q psy5950 237 DDLTDKIDFIICLGGDGTLLYASLLFQQSVPPVMAFHLGSLGFLTPFEFENFEDQVTNVLEGHAALTLRSRLRCIIMRKN 316 (511)
Q Consensus 237 ~~~~~~~DlVIvLGGDGTlL~Aar~~~~~~~PILGINlG~LGFLt~~~~~~~~~~L~~il~G~~~ie~R~rL~v~V~~~~ 316 (511)
..+++|+||+||||||||+|+|.+... +||+|||+|++|||+++++++++++|+++++ +|.+++|+||+| +.++
T Consensus 65 --~~~~~DlvIvlGGDGT~L~aa~~~~~~-~PilGIN~G~lGFLt~~~~~~~~~~l~~l~~-~~~i~~r~~L~~-v~~~- 138 (278)
T 1z0s_A 65 --ELENFDFIVSVGGDGTILRILQKLKRC-PPIFGINTGRVGLLTHASPENFEVELKKAVE-KFEVERFPRVSC-SAMP- 138 (278)
T ss_dssp --GGGGSSEEEEEECHHHHHHHHTTCSSC-CCEEEEECSSSCTTCCBBTTBCHHHHHHHHH-HCCEEEECCEEE-TTEE-
T ss_pred --ccCCCCEEEEECCCHHHHHHHHHhCCC-CcEEEECCCCCccccccCHHHHHHHHHHHHh-hCeEEEeEEEEE-EECC-
Confidence 013679999999999999999999888 9999999999999999999999999999999 999999999999 7432
Q ss_pred cccccCCCCCCccceeeeEEeecCCCCcEEEEEEEECCEEEEEEecCeeEEcCCCchhHHHhhcCCCccCCCCCceEEEE
Q psy5950 317 EETAKDAKPPTNILVLNEVVIDRGPSPYLSNIDLYLDGKLITSVQGDGLIVSTPTGSTAYAVAAGASMIHPSVPAIMVTP 396 (511)
Q Consensus 317 ~~~~~~~~~~~~~~ALNEVvI~Rg~~~~~~~i~v~idg~~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~aivITP 396 (511)
..+|||||+|.|+..+++++++++|||+++++|+||||||||||||||||||||||||+|++++|++||
T Consensus 139 -----------~~~ALNEv~I~~~~~~~~~~~~v~idg~~~~~~~~DGlIVsTPTGSTAY~lSAGGpIv~P~~~~l~ltP 207 (278)
T 1z0s_A 139 -----------DVLALNEIAVLSRKPAKMIDVALRVDGVEVDRIRCDGFIVATQIGSTGYAFSAGGPVVEPYLECFILIP 207 (278)
T ss_dssp -----------EEEESSEEEEEESSTTCCEEEEEEETTEEEEEEEESEEEEEESGGGGTHHHHTTCCEECTTSCCEEEEE
T ss_pred -----------CcEEEEEEEEecCCCccEEEEEEEECCEEEEEEecCeEEEecCCchhHHHhhCCCceeCCCCCeEEEEE
Confidence 158999999999998999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCEEeCCCCEEEEEEccCCCCeEEEEEcCCceeecCCCCEEEEEEcCceeeEEEecCCCCcHHHHHHhhcCC
Q psy5950 397 ICPHSLSFRPIVVPAGVELKISVSPDSRNTAWVSFDGRNRQELLHGDSLRVTTSIYPVPSICAQDQIADWFDSLGECLHW 476 (511)
Q Consensus 397 IcPhsLs~RPiVlp~~~~I~I~v~~~sr~~a~v~iDG~~~~~L~~Gd~V~I~~S~~~l~lI~~~~~~~~~f~~Lr~KL~W 476 (511)
||||++++||+|+|++++|+|+ +..+.+++||+. ++++||+|.|+++++++++ +++ ++||++||+||+|
T Consensus 208 I~P~~l~~RpiVl~~~~~i~i~-----~~~~~l~~DG~~--~l~~g~~v~I~~s~~~~~l--~~~--~~f~~~Lr~Kl~w 276 (278)
T 1z0s_A 208 IAPFRFGWKPYVVSMERKIEVI-----AEKAIVVADGQK--SVDFDGEITIEKSEFPAVF--FKN--EKRFRNLFGKVRS 276 (278)
T ss_dssp ESCCSSBCCCEEECTTSCEEEE-----EEEEEEEETTTE--EEEEEEEEEEEECSCCEEE--ECC--TTHHHHHHHHHHT
T ss_pred eCCCCCCCCcEEECCCCEEEEE-----eCcEEEEEcCCe--ecCCCcEEEEEECCCeeEe--CCC--CCHHHHHHHHhCC
Confidence 9999999999999999999987 224899999998 8999999999999999999 444 8999999999999
Q ss_pred C
Q psy5950 477 N 477 (511)
Q Consensus 477 g 477 (511)
.
T Consensus 277 ~ 277 (278)
T 1z0s_A 277 I 277 (278)
T ss_dssp C
T ss_pred C
Confidence 5
No 4
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=100.00 E-value=1.7e-61 Score=488.16 Aligned_cols=298 Identities=27% Similarity=0.385 Sum_probs=242.2
Q ss_pred CCcEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCcccccc-ccCCC-CccccccccccccCCCCCCCCCccEEE
Q psy5950 170 PPLTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTL-LATNP-SFTVVKDKLMTFRDGKDDLTDKIDFII 247 (511)
Q Consensus 170 ~p~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~-l~~~~-~f~~~~~~l~~~~~~~~~~~~~~DlVI 247 (511)
++++|+||.|+.+.++.+.+.++++||.++ +++|+++....++.. ..... .+.........+. ..+...+++|+||
T Consensus 3 ~m~ki~iI~n~~~~~~~~~~~~l~~~L~~~-g~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~d~vi 80 (307)
T 1u0t_A 3 AHRSVLLVVHTGRDEATETARRVEKVLGDN-KIALRVLSAEAVDRGSLHLAPDDMRAMGVEIEVVD-ADQHAADGCELVL 80 (307)
T ss_dssp --CEEEEEESSSGGGGSHHHHHHHHHHHTT-TCEEEEEC------------------------------------CCCEE
T ss_pred CCCEEEEEEeCCCHHHHHHHHHHHHHHHHC-CCEEEEecchhhhhhcccccccccccccccccccc-cccccccCCCEEE
Confidence 367899999999988999999999999864 678877765443210 00000 0000000000110 0112456789999
Q ss_pred EEcCchhHHHHHHHcCCCCCcEEEEeCCCccccccCCcccHHHHHHHHHcCCcEEEEEeeEEEEEEeCCcccccCCCCCC
Q psy5950 248 CLGGDGTLLYASLLFQQSVPPVMAFHLGSLGFLTPFEFENFEDQVTNVLEGHAALTLRSRLRCIIMRKNEETAKDAKPPT 327 (511)
Q Consensus 248 vLGGDGTlL~Aar~~~~~~~PILGINlG~LGFLt~~~~~~~~~~L~~il~G~~~ie~R~rL~v~V~~~~~~~~~~~~~~~ 327 (511)
++|||||||+|++.+...++|+||||+|++|||+++.+++++++++++++|+|.+++|++|++.+.++++. ..
T Consensus 81 ~~GGDGT~l~a~~~~~~~~~pvlgi~~G~~gfl~~~~~~~~~~~~~~i~~g~~~~~~r~~l~~~v~~~g~~-------~~ 153 (307)
T 1u0t_A 81 VLGGDGTFLRAAELARNASIPVLGVNLGRIGFLAEAEAEAIDAVLEHVVAQDYRVEDRLTLDVVVRQGGRI-------VN 153 (307)
T ss_dssp EEECHHHHHHHHHHHHHHTCCEEEEECSSCCSSCSEEGGGHHHHHHHHHHTCCEEEEECCEEEEEEETTEE-------EE
T ss_pred EEeCCHHHHHHHHHhccCCCCEEEEeCCCCccCcccCHHHHHHHHHHHHcCCcEEEEEEEEEEEEEeCccc-------ee
Confidence 99999999999999987789999999999999999999999999999999999999999999998765432 12
Q ss_pred ccceeeeEEeecCCCCcEEEEEEEECCEEEEEEecCeeEEcCCCchhHHHhhcCCCccCCCCCceEEEEcCCCCCCCCCE
Q psy5950 328 NILVLNEVVIDRGPSPYLSNIDLYLDGKLITSVQGDGLIVSTPTGSTAYAVAAGASMIHPSVPAIMVTPICPHSLSFRPI 407 (511)
Q Consensus 328 ~~~ALNEVvI~Rg~~~~~~~i~v~idg~~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~aivITPIcPhsLs~RPi 407 (511)
..+||||++|.++..+++++++|++||++++++++|||||||||||||||+|||||+|+|++++++++|||||+++.||+
T Consensus 154 ~~~ALNev~i~~~~~~~~~~~~v~idg~~~~~~~~dGlivsTptGSTaY~lSaGGpiv~P~~~~~~l~pi~p~~l~~rp~ 233 (307)
T 1u0t_A 154 RGWALNEVSLEKGPRLGVLGVVVEIDGRPVSAFGCDGVLVSTPTGSTAYAFSAGGPVLWPDLEAILVVPNNAHALFGRPM 233 (307)
T ss_dssp EEEESSEEEEECSSSSSCEEEEEESSSSEEEEEEESEEEEECTGGGGTHHHHTTCCEECTTCCCEEEEEESCSSSCCCCE
T ss_pred ceeeeeeEEEecCCCceEEEEEEEECCEEEEEEcCCEEEEccchhhHHHHhcCCCCccCCCCCeEEEEeecCccccCCCE
Confidence 35899999999998889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCEEEEEEccCCCCeEEEEEcCCceeecCCCCEEEEEEcCceeeEEEecCCCCcHHHHHHhhcCCCcc
Q psy5950 408 VVPAGVELKISVSPDSRNTAWVSFDGRNRQELLHGDSLRVTTSIYPVPSICAQDQIADWFDSLGECLHWNVR 479 (511)
Q Consensus 408 Vlp~~~~I~I~v~~~sr~~a~v~iDG~~~~~L~~Gd~V~I~~S~~~l~lI~~~~~~~~~f~~Lr~KL~Wg~r 479 (511)
|+|++++|+|++... +..+.+++||+...++++|++|+|+++++++++|++.+ ++||++||+||+|+..
T Consensus 234 v~~~~~~i~i~v~~~-~~~~~~~~DG~~~~~l~~g~~i~i~~~~~~~~li~~~~--~~~~~~l~~kl~~~~~ 302 (307)
T 1u0t_A 234 VTSPEATIAIEIEAD-GHDALVFCDGRREMLIPAGSRLEVTRCVTSVKWARLDS--APFTDRLVRKFRLPVT 302 (307)
T ss_dssp EECTTCCEEEEECTT-SCCEEEEETTTEEEEECTTCEEEEEECSSCEEEEECSC--CCHHHHHHHHHTCCCT
T ss_pred EECCCCEEEEEEecC-CCCEEEEECCCeEEecCCCCEEEEEECCCeeEEEEeCC--CCHHHHHHHHhCCCcc
Confidence 999999999988633 23589999999989999999999999999999999865 8999999999988744
No 5
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=100.00 E-value=3.3e-60 Score=472.40 Aligned_cols=286 Identities=28% Similarity=0.475 Sum_probs=237.7
Q ss_pred CcEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEEc
Q psy5950 171 PLTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICLG 250 (511)
Q Consensus 171 p~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvLG 250 (511)
.++|+||.++.++++.+.+.++++||.++ +++++++...++.... ..+. .+ ..+...+++|+||++|
T Consensus 5 mkki~ii~np~~~~~~~~~~~i~~~l~~~-g~~v~~~~~~~~~~~~---~~~~-------~~--~~~~~~~~~D~vi~~G 71 (292)
T 2an1_A 5 FKCIGIVGHPRHPTALTTHEMLYRWLCDQ-GYEVIVEQQIAHELQL---KNVP-------TG--TLAEIGQQADLAVVVG 71 (292)
T ss_dssp CCEEEEECC-------CHHHHHHHHHHHT-TCEEEEEHHHHHHTTC---SSCC-------EE--CHHHHHHHCSEEEECS
T ss_pred CcEEEEEEcCCCHHHHHHHHHHHHHHHHC-CCEEEEecchhhhccc---cccc-------cc--chhhcccCCCEEEEEc
Confidence 47899999998888888999999999864 6777776543221000 0000 00 0111234689999999
Q ss_pred CchhHHHHHHHcCCCCCcEEEEeCCCccccccCCcccHHHHHHHHHcCCcEEEEEeeEEEEEEeCCcccccCCCCCCccc
Q psy5950 251 GDGTLLYASLLFQQSVPPVMAFHLGSLGFLTPFEFENFEDQVTNVLEGHAALTLRSRLRCIIMRKNEETAKDAKPPTNIL 330 (511)
Q Consensus 251 GDGTlL~Aar~~~~~~~PILGINlG~LGFLt~~~~~~~~~~L~~il~G~~~ie~R~rL~v~V~~~~~~~~~~~~~~~~~~ 330 (511)
||||+|+|++.+...++|+||||+|++|||+++.+++++++++.+++|+|.+++|++|++.+.+.++. ....+
T Consensus 72 GDGT~l~a~~~~~~~~~P~lGI~~Gt~gfla~~~~~~~~~al~~i~~g~~~~~~r~~l~~~~~~~~~~-------~~~~~ 144 (292)
T 2an1_A 72 GDGNMLGAARTLARYDINVIGINRGNLGFLTDLDPDNALQQLSDVLEGRYISEKRFLLEAQVCQQDRQ-------KRIST 144 (292)
T ss_dssp CHHHHHHHHHHHTTSSCEEEEBCSSSCCSSCCBCTTSHHHHHHHHHTTCEEEEEEEEEEEEEECC-----------CEEE
T ss_pred CcHHHHHHHHHhhcCCCCEEEEECCCcccCCcCCHHHHHHHHHHHHcCCCEEEEeEEEEEEEEeCCce-------Eeeee
Confidence 99999999999988889999999999999999999999999999999999999999999998754322 23568
Q ss_pred eeeeEEeecCCCCcEEEEEEEECCEEEEEEecCeeEEcCCCchhHHHhhcCCCccCCCCCceEEEEcCCCCCCCCCEEeC
Q psy5950 331 VLNEVVIDRGPSPYLSNIDLYLDGKLITSVQGDGLIVSTPTGSTAYAVAAGASMIHPSVPAIMVTPICPHSLSFRPIVVP 410 (511)
Q Consensus 331 ALNEVvI~Rg~~~~~~~i~v~idg~~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~aivITPIcPhsLs~RPiVlp 410 (511)
||||+++.++...+++++++++||+.++++++||+||||||||||||+|||||+++|++++++++|||||+++.||+|++
T Consensus 145 alnev~i~~~~~~~~~~~~v~idg~~~~~~~~dglivstptGSTay~~SaGG~iv~P~~~~~~l~pi~p~~l~~r~iv~~ 224 (292)
T 2an1_A 145 AINEVVLHPGKVAHMIEFEVYIDETFAFSQRSDGLIISTPTGSTAYSLSAGGPILTPSLDAITLVPMFPHTLSARPLVIN 224 (292)
T ss_dssp ESSEEEEEESSTTCCEEEEEEETTEEEEEEEESEEEEECTGGGGTHHHHTTCCEECTTCSEEEEEEESCSSTTCCCEEEE
T ss_pred EeeeEEEecCCCCceEEEEEEECCEEEEEEEeCEEEECCCCchHHHHHhCCCCCCCCCCCeEEEEecCcCcCCCCCEEEC
Confidence 99999999988889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEccCCCCeEEEEEcCCceeecCCCCEEEEEEcCceeeEEEecCCCCcHHHHHHhhcCCCcc
Q psy5950 411 AGVELKISVSPDSRNTAWVSFDGRNRQELLHGDSLRVTTSIYPVPSICAQDQIADWFDSLGECLHWNVR 479 (511)
Q Consensus 411 ~~~~I~I~v~~~sr~~a~v~iDG~~~~~L~~Gd~V~I~~S~~~l~lI~~~~~~~~~f~~Lr~KL~Wg~r 479 (511)
++.+|+|++... +..+.+.+||+....+.+|+.|+|+.++..++++++.+ ++||++||+||+||.+
T Consensus 225 ~~~~i~i~~~~~-~~~~~~~~DG~~~~~~~~~~~v~i~~~~~~~~li~~~~--~~~~~~l~~kl~w~~~ 290 (292)
T 2an1_A 225 SSSTIRLRFSHR-RSDLEISCDSQIALPIQEGEDVLIRRCDYHLNLIHPKD--YSYFNTLSTKLGWSKK 290 (292)
T ss_dssp TTCCEEEEECC----CEEEEETTSCCEEECTTCEEEEEEEEEEEEEEEETT--CCHHHHHHHHHTCBCC
T ss_pred CCCEEEEEEccC-CCceEEEECCCeEEecCCCcEEEEEECCCEEEEEEeCC--CCHHHHHHHHhccCCc
Confidence 999999987532 23488999999999999999999999999999999855 8999999999999964
No 6
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=100.00 E-value=2.5e-58 Score=457.76 Aligned_cols=259 Identities=19% Similarity=0.276 Sum_probs=227.8
Q ss_pred EEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEEcCc
Q psy5950 173 TVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICLGGD 252 (511)
Q Consensus 173 ~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvLGGD 252 (511)
+|+||.++ ++++.+.+.++.+||++ .++++ + .+++|+||++|||
T Consensus 2 ki~ii~n~-~~~~~~~~~~l~~~l~~-~g~~v--~--------------------------------~~~~D~vv~lGGD 45 (272)
T 2i2c_A 2 KYMITSKG-DEKSDLLRLNMIAGFGE-YDMEY--D--------------------------------DVEPEIVISIGGD 45 (272)
T ss_dssp EEEEEECC-SHHHHHHHHHHHHHHTT-SSCEE--C--------------------------------SSSCSEEEEEESH
T ss_pred EEEEEECC-CHHHHHHHHHHHHHHHH-CCCEe--C--------------------------------CCCCCEEEEEcCc
Confidence 68999994 67788889999999975 45443 0 1357999999999
Q ss_pred hhHHHHHHHcCCC--CCcEEEEeCCCccccccCCcccHHHHHHHHHcCCcEEEEEeeEEEEEEeCCcccccCCCCCCccc
Q psy5950 253 GTLLYASLLFQQS--VPPVMAFHLGSLGFLTPFEFENFEDQVTNVLEGHAALTLRSRLRCIIMRKNEETAKDAKPPTNIL 330 (511)
Q Consensus 253 GTlL~Aar~~~~~--~~PILGINlG~LGFLt~~~~~~~~~~L~~il~G~~~ie~R~rL~v~V~~~~~~~~~~~~~~~~~~ 330 (511)
||+|+|++.+... ++||||||+|++|||+++.+++++++++++++|+|.+++|++|++++.+.++.. ....+
T Consensus 46 GT~l~aa~~~~~~~~~~PilGIn~G~lgfl~~~~~~~~~~~l~~l~~g~~~i~~r~~L~~~v~~~~g~~------~~~~~ 119 (272)
T 2i2c_A 46 GTFLSAFHQYEERLDEIAFIGIHTGHLGFYADWRPAEADKLVKLLAKGEYQKVSYPLLKTTVKYGIGKK------EATYL 119 (272)
T ss_dssp HHHHHHHHHTGGGTTTCEEEEEESSSCCSSCCBCGGGHHHHHHHHHTTCCEEEEEEEEEEEEEESSSCC------EEEEE
T ss_pred HHHHHHHHHHhhcCCCCCEEEEeCCCCCcCCcCCHHHHHHHHHHHHcCCCEEEEEEEEEEEEEeCCCcE------EeHHh
Confidence 9999999999875 899999999999999999999999999999999999999999999987643220 11468
Q ss_pred eeeeEEeecCCCCcEEEEEEEECCEEEEEEecCeeEEcCCCchhHHHhhcCCCccCCCCCceEEEEcCCCCCC-CC----
Q psy5950 331 VLNEVVIDRGPSPYLSNIDLYLDGKLITSVQGDGLIVSTPTGSTAYAVAAGASMIHPSVPAIMVTPICPHSLS-FR---- 405 (511)
Q Consensus 331 ALNEVvI~Rg~~~~~~~i~v~idg~~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~aivITPIcPhsLs-~R---- 405 (511)
||||++|.+. ++++++++++||+++++++|||+|||||||||||++|||||+|+|+++++++||||||++. +|
T Consensus 120 ALNev~i~~~--~~~~~~~i~idg~~~~~~~~DGlivsTptGSTaY~~SaGGpiv~P~~~~~~ltpi~p~~l~~~r~~~~ 197 (272)
T 2i2c_A 120 ALNESTVKSS--GGPFVVDVVINDIHFERFRGDGLCMSTPSGTTAYNKSLGGALMHPSIEAMQLTEMASINNRVYRTIGS 197 (272)
T ss_dssp ESSEEEEEES--SSCEEEEEEETTEEEEEEEESEEEEECTGGGGTHHHHTTCCCCCTTSCEEEEEEESCCCSSSCCCCCS
T ss_pred hhhHhhhccc--CcEEEEEEEECCEEEEEEECCEEEEEccccHHHHHHcCCCCeeCCCCCceEEeCCCCccchhhhccCC
Confidence 9999999884 5899999999999999999999999999999999999999999999999999999999998 55
Q ss_pred CEEeCCCCEEEEEEccCCCCeEEEEEcCCceeecCCCCEEEEEEcCceeeEEEecCCCCcHHHHHHhhcCCCccc
Q psy5950 406 PIVVPAGVELKISVSPDSRNTAWVSFDGRNRQELLHGDSLRVTTSIYPVPSICAQDQIADWFDSLGECLHWNVRK 480 (511)
Q Consensus 406 PiVlp~~~~I~I~v~~~sr~~a~v~iDG~~~~~L~~Gd~V~I~~S~~~l~lI~~~~~~~~~f~~Lr~KL~Wg~r~ 480 (511)
|+|+|++.+|+|++.. ...+.+++||+. ..+.+|++|+|++++..+++|++.+ ++||++||+||+|+...
T Consensus 198 p~v~~~~~~i~i~~~~--~~~~~~~~DG~~-~~~~~~~~v~i~~~~~~~~~i~~~~--~~f~~~l~~kl~~~~~~ 267 (272)
T 2i2c_A 198 PLVFPKHHVVSLQPVN--DKDFQISVDHLS-ILHRDVQEIRYEVSAKKIHFARFRS--FPFWRRVHDSFIEDLEH 267 (272)
T ss_dssp CEEEETTCCEEEEESS--CCCEEEEETTEE-EEECSEEEEEEEEEEEEEEEEECSC--CCHHHHHHHHHTCC---
T ss_pred cEEeCCCCEEEEEEcC--CCCEEEEECCCE-eecCCCCEEEEEEcCCEEEEEEeCC--CCHHHHHHHHhCCCccc
Confidence 9999999999998753 335899999998 6799999999999999999998865 89999999999999864
No 7
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=1.2e-57 Score=449.85 Aligned_cols=218 Identities=25% Similarity=0.403 Sum_probs=202.6
Q ss_pred CCCccEEEEEcCchhHHHHHHHcCCCCCcEEEEeCCCccccccCCcccHHHHHHHHHcCCcEEEEEeeEEEEEEeCCccc
Q psy5950 240 TDKIDFIICLGGDGTLLYASLLFQQSVPPVMAFHLGSLGFLTPFEFENFEDQVTNVLEGHAALTLRSRLRCIIMRKNEET 319 (511)
Q Consensus 240 ~~~~DlVIvLGGDGTlL~Aar~~~~~~~PILGINlG~LGFLt~~~~~~~~~~L~~il~G~~~ie~R~rL~v~V~~~~~~~ 319 (511)
.+++|+||++|||||||++++.+.. ++|+||||+|++|||+++.+++++++++++++|+|.+++|++|++.+.++
T Consensus 39 ~~~~D~vv~~GGDGTll~~a~~~~~-~~PilGIn~G~~Gfl~~~~~~~~~~al~~i~~g~~~i~~r~~l~~~~~~~---- 113 (258)
T 1yt5_A 39 RVTADLIVVVGGDGTVLKAAKKAAD-GTPMVGFKAGRLGFLTSYTLDEIDRFLEDLRNWNFREETRWFIQIESELG---- 113 (258)
T ss_dssp CBCCSEEEEEECHHHHHHHHTTBCT-TCEEEEEESSSCCSSCCBCGGGHHHHHHHHHTTCCEEEEEEEEEEEETTE----
T ss_pred cCCCCEEEEEeCcHHHHHHHHHhCC-CCCEEEEECCCCCccCcCCHHHHHHHHHHHHcCCceEEEEEEEEEEEcCC----
Confidence 3468999999999999999999998 99999999999999999999999999999999999999999999987321
Q ss_pred ccCCCCCCccceeeeEEeecCCCCcEEEEEEEECCEEEEEEecCeeEEcCCCchhHHHhhcCCCccCCCCCceEEEEcCC
Q psy5950 320 AKDAKPPTNILVLNEVVIDRGPSPYLSNIDLYLDGKLITSVQGDGLIVSTPTGSTAYAVAAGASMIHPSVPAIMVTPICP 399 (511)
Q Consensus 320 ~~~~~~~~~~~ALNEVvI~Rg~~~~~~~i~v~idg~~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~v~aivITPIcP 399 (511)
..+||||++|.++...+++++++++||++++++++||+||||||||||||+|||||+++|++++++++||||
T Consensus 114 --------~~~alNev~i~~~~~~~~~~~~v~idg~~~~~~~~dGlivsTptGSTaY~~SaGGpiv~P~~~~~~i~pi~p 185 (258)
T 1yt5_A 114 --------NHLALNDVTLERDLSGKMVEIEVEVEHHSSMWFFADGVVISTPTGSTAYSLSIGGPIIFPECEVLEISPIAP 185 (258)
T ss_dssp --------EEEESSEEEEECCTTSCCEEEEEEETTSCCEEEEESEEEEECTGGGGTTTTTTTCCCCCTTCCEEEEEEESC
T ss_pred --------cceeeeEEEEecCCCCceEEEEEEECCEEEEEEEccEEEEEcCCCcHHHHhhCCCcccCCCCCEEEEEEecc
Confidence 358999999999988899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEeCCCCEEEEEEccCCCCeEEEEEcCCceeecCCCCEEEEEEcCceeeEEEecCCCCcHHHHHHhhcCCCcc
Q psy5950 400 HSLSFRPIVVPAGVELKISVSPDSRNTAWVSFDGRNRQELLHGDSLRVTTSIYPVPSICAQDQIADWFDSLGECLHWNVR 479 (511)
Q Consensus 400 hsLs~RPiVlp~~~~I~I~v~~~sr~~a~v~iDG~~~~~L~~Gd~V~I~~S~~~l~lI~~~~~~~~~f~~Lr~KL~Wg~r 479 (511)
|+++.||+|++++.+|+|++. ..+.+++||+....+.+ |+|+.++++++++++++ ++||++||+||+||.+
T Consensus 186 ~~l~~rp~v~~~~~~i~i~~~----~~~~~~~DG~~~~~~~~---i~i~~~~~~~~li~~~~--~~~~~~l~~kl~w~~~ 256 (258)
T 1yt5_A 186 QFFLTRSVVIPSNFKVVVESQ----RDINMLVDGVLTGKTKR---IEVKKSRRYVRILRPPE--YDYVTVIRDKLGYGRR 256 (258)
T ss_dssp STTCCCCEEEETTSCEEEEEE----EEEEEEETTEEEEEEEE---EEEEEEEEEEEEEECTT--CCHHHHHHHHHCCSCC
T ss_pred ccccCCCEEECCCCEEEEEEC----CCEEEEECCCcceeeEE---EEEEECCCeEEEEEcCC--CCHHHHHHHHcCCCcc
Confidence 999999999999999999873 24789999998877754 99999999999998755 8999999999999975
No 8
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=99.88 E-value=2e-23 Score=211.68 Aligned_cols=255 Identities=13% Similarity=0.087 Sum_probs=175.8
Q ss_pred CcEEEEEecCCCh--hhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEE
Q psy5950 171 PLTVLVIKKVRDV--SVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIIC 248 (511)
Q Consensus 171 p~~VlII~K~~~~--~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIv 248 (511)
.++++||.+|... ...+.+.++.++|.+. ++.+.+......... . .+. .+...+.+|+||+
T Consensus 24 m~~i~vI~NP~sg~~~~~~~~~~i~~~L~~~-g~~~~~~~t~~~~~a-------~----~~~-----~~~~~~~~d~vvv 86 (337)
T 2qv7_A 24 RKRARIIYNPTSGKEQFKRELPDALIKLEKA-GYETSAYATEKIGDA-------T----LEA-----ERAMHENYDVLIA 86 (337)
T ss_dssp CEEEEEEECTTSTTSCHHHHHHHHHHHHHHT-TEEEEEEECCSTTHH-------H----HHH-----HHHTTTTCSEEEE
T ss_pred cceEEEEECCCCCCCchHHHHHHHHHHHHHc-CCeEEEEEecCcchH-------H----HHH-----HHHhhcCCCEEEE
Confidence 4789999998765 4667788999999864 555544321111000 0 000 0112346799999
Q ss_pred EcCchhHHHHHHHc--CCCCCcEEEEeCCCccccccC--CcccHHHHHHHHHcCCcEE------EEE-eeEEEEEEeCCc
Q psy5950 249 LGGDGTLLYASLLF--QQSVPPVMAFHLGSLGFLTPF--EFENFEDQVTNVLEGHAAL------TLR-SRLRCIIMRKNE 317 (511)
Q Consensus 249 LGGDGTlL~Aar~~--~~~~~PILGINlG~LGFLt~~--~~~~~~~~L~~il~G~~~i------e~R-~rL~v~V~~~~~ 317 (511)
+|||||++.+++.+ ....+|+.+|++|+.+||+.. -+.++.++++.+++|++.. +.| +++.+.+--...
T Consensus 87 ~GGDGTv~~v~~~l~~~~~~~pl~iIP~GT~N~lAr~Lg~~~~~~~al~~i~~g~~~~iD~g~v~~r~fl~~~~~G~~a~ 166 (337)
T 2qv7_A 87 AGGDGTLNEVVNGIAEKPNRPKLGVIPMGTVNDFGRALHIPNDIMGALDVIIEGHSTKVDIGKMNNRYFINLAAGGQLTQ 166 (337)
T ss_dssp EECHHHHHHHHHHHTTCSSCCEEEEEECSSCCHHHHHTTCCSSHHHHHHHHHHTCEEEEEEEEETTEEESSEEEEECBCC
T ss_pred EcCchHHHHHHHHHHhCCCCCcEEEecCCcHhHHHHHcCCCCCHHHHHHHHHcCCcEEEEEEEECCEEEEEEeeecccHH
Confidence 99999999999998 667899999999999999965 3678999999999998763 445 333343310000
Q ss_pred cc------ccC--CCCCCccceeeeEEeecCCCCcEEEEEEEECCEEEEEEecCeeEEcCCCchhHHHhhcCCCccCC--
Q psy5950 318 ET------AKD--AKPPTNILVLNEVVIDRGPSPYLSNIDLYLDGKLITSVQGDGLIVSTPTGSTAYAVAAGASMIHP-- 387 (511)
Q Consensus 318 ~~------~~~--~~~~~~~~ALNEVvI~Rg~~~~~~~i~v~idg~~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P-- 387 (511)
.. .+. +.......|||+++- .++..++|.+||+. +++|+++|+|++||| ++|||++.|
T Consensus 167 v~~~~~~~~k~~~G~~~Y~~~~l~~l~~-----~~~~~~~i~~dg~~---~~~~~~~v~v~n~~~----~gGg~~i~P~a 234 (337)
T 2qv7_A 167 VSYETPSKLKSIVGPFAYYIKGFEMLPQ-----MKAVDLRIEYDGNV---FQGEALLFFLGLTNS----MAGFEKLVPDA 234 (337)
T ss_dssp -------------CGGGSCCCTTTTGGG-----BCCEEEEEEETTEE---EEEEEEEEEEESSCC----CSSCSCSSTTC
T ss_pred HHHHhhHHHHhccChHHHHHHHHHHHHh-----CCCccEEEEECCEE---EEeeEEEEEEECCCC----CCCCCccCCCC
Confidence 00 000 000112235666641 34678999999986 679999999999997 789999999
Q ss_pred -----CCCceEEEEcCCCCC-CCCCEEeCCC----CEE------EEEEccCCCCeEEEEEcCCceeecCCCCEEEEEEcC
Q psy5950 388 -----SVPAIMVTPICPHSL-SFRPIVVPAG----VEL------KISVSPDSRNTAWVSFDGRNRQELLHGDSLRVTTSI 451 (511)
Q Consensus 388 -----~v~aivITPIcPhsL-s~RPiVlp~~----~~I------~I~v~~~sr~~a~v~iDG~~~~~L~~Gd~V~I~~S~ 451 (511)
.+++++++|+||+.+ ..+|.+++.. ..| +|++... ....+.+||+... ++.|+|+..+
T Consensus 235 ~~~DG~ldv~~v~~~~~~~l~~~~~~v~~g~~~~~~~v~~~~~~~i~i~~~--~~~~~~iDGE~~~----~~~i~i~v~p 308 (337)
T 2qv7_A 235 KLDDGYFTLIIVEKSNLAELGHIMTLASRGEHTKHPKVIYEKAKAINISSF--TDLQLNVDGEYGG----KLPANFLNLE 308 (337)
T ss_dssp CSSSSCEEEEEEECCCHHHHHHHHHHHTTTCGGGSTTEEEEEESEEEEECS--SCCEEEETTEEEE----ESCEEEEEEE
T ss_pred cCCCCeEEEEEEccCCHHHHHHHHHHHhcCCccCCCCEEEEEeeEEEEEEC--CCCeEEECCCcCC----CCcEEEEEEc
Confidence 689999999999976 6677776642 222 2344322 2367999999765 3569999999
Q ss_pred ceeeEEEec
Q psy5950 452 YPVPSICAQ 460 (511)
Q Consensus 452 ~~l~lI~~~ 460 (511)
..++++.+.
T Consensus 309 ~~l~v~~p~ 317 (337)
T 2qv7_A 309 RHIDVFAPN 317 (337)
T ss_dssp EEEEEECCT
T ss_pred CeEEEEecC
Confidence 999998654
No 9
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=99.78 E-value=1.1e-19 Score=184.29 Aligned_cols=258 Identities=17% Similarity=0.195 Sum_probs=170.2
Q ss_pred CcEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEEc
Q psy5950 171 PLTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICLG 250 (511)
Q Consensus 171 p~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvLG 250 (511)
.++++||.+|..... +.+.++.++|.+. ++.+.+......... .. +. .+...+.+|+||++|
T Consensus 29 ~~~~~vi~Np~sg~~-~~~~~i~~~l~~~-g~~~~~~~t~~~~~~-------~~----~~-----~~~~~~~~d~vvv~G 90 (332)
T 2bon_A 29 FPASLLILNGKSTDN-LPLREAIMLLREE-GMTIHVRVTWEKGDA-------AR----YV-----EEARKFGVATVIAGG 90 (332)
T ss_dssp -CCEEEEECSSSTTC-HHHHHHHHHHHTT-TCCEEEEECCSTTHH-------HH----HH-----HHHHHHTCSEEEEEE
T ss_pred cceEEEEECCCCCCC-chHHHHHHHHHHc-CCcEEEEEecCcchH-------HH----HH-----HHHHhcCCCEEEEEc
Confidence 467999999876655 6678999999864 444443321111000 00 00 011123579999999
Q ss_pred CchhHHHHHHHcC----CCCCcEEEEeCCCcc-ccccCC-cccHHHHHHHHHcCCc------EEEEE-eeEEE-------
Q psy5950 251 GDGTLLYASLLFQ----QSVPPVMAFHLGSLG-FLTPFE-FENFEDQVTNVLEGHA------ALTLR-SRLRC------- 310 (511)
Q Consensus 251 GDGTlL~Aar~~~----~~~~PILGINlG~LG-FLt~~~-~~~~~~~L~~il~G~~------~ie~R-~rL~v------- 310 (511)
|||||+.+++.+. ...+|+..|++|+.| |...+. +.+++++++.+++|++ .++.| ..|.+
T Consensus 91 GDGTl~~v~~~l~~~~~~~~~plgiiP~Gt~N~fa~~l~i~~~~~~al~~i~~g~~~~iDlg~v~~r~~fl~~~~~G~da 170 (332)
T 2bon_A 91 GDGTINEVSTALIQCEGDDIPALGILPLGTANDFATSVGIPEALDKALKLAIAGDAIAIDMAQVNKQTCFINMATGGFGT 170 (332)
T ss_dssp SHHHHHHHHHHHHHCCSSCCCEEEEEECSSSCHHHHHTTCCSSHHHHHHHHHHSEEEEEEEEEETTSCEESSEEEEEEEE
T ss_pred cchHHHHHHHHHhhcccCCCCeEEEecCcCHHHHHHhcCCCCCHHHHHHHHHcCCeEEeeEEEECCceEEEEEEeECccH
Confidence 9999999999887 678998889999999 555788 6789999999999988 45445 33331
Q ss_pred EEEeC-CcccccCCCCCCccceeeeEEeecCCCCcEEEEEEEECCEEEEEEecCeeEEcCCCchhHHHhhcCCCccCC--
Q psy5950 311 IIMRK-NEETAKDAKPPTNILVLNEVVIDRGPSPYLSNIDLYLDGKLITSVQGDGLIVSTPTGSTAYAVAAGASMIHP-- 387 (511)
Q Consensus 311 ~V~~~-~~~~~~~~~~~~~~~ALNEVvI~Rg~~~~~~~i~v~idg~~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P-- 387 (511)
.+... ++.. +... ..-.|++|-+ .+-...+...++|.+||+.+ ++|+++|++..|+ | ++||+.+.|
T Consensus 171 ~v~~~~~~~~-k~~~-G~~~Y~~~~l--~~l~~~~~~~~~i~~dg~~~---~~~~~~v~v~N~~--~--~ggg~~i~P~a 239 (332)
T 2bon_A 171 RITTETPEKL-KAAL-GSVSYIIHGL--MRMDTLQPDRCEIRGENFHW---QGDALVIGIGNGR--Q--AGGGQQLCPNA 239 (332)
T ss_dssp EC-----------CC-HHHHHHHHHT--SCEEEEECEEEEEEETTEEE---EEEESEEEEESSS--C--BTTTBCSCTTC
T ss_pred HHHHHhhHHh-Hhcc-cHHHHHHHHH--HHHhhCCCeeEEEEECCEEE---EEEEEEEEEECCC--c--cCCCcccCCCC
Confidence 11110 0000 0000 0002333321 11111235678899999864 6899999985554 4 789999999
Q ss_pred -----CCCceEEEEcCCCCCCC----------CCEEeCCCCEEEEEEccCCCCeEEEEEcCCceeecCCCCEEEEEEcCc
Q psy5950 388 -----SVPAIMVTPICPHSLSF----------RPIVVPAGVELKISVSPDSRNTAWVSFDGRNRQELLHGDSLRVTTSIY 452 (511)
Q Consensus 388 -----~v~aivITPIcPhsLs~----------RPiVlp~~~~I~I~v~~~sr~~a~v~iDG~~~~~L~~Gd~V~I~~S~~ 452 (511)
.+++++++|+ ++.+.. +++......+|+|+.. ....+.+||+... ++.++|+..+.
T Consensus 240 ~~~DG~Ldv~iv~~~-~~~l~~~~~~~~g~~~~~v~~~~~~~i~I~~~----~~~~~~iDGE~~~----~~~~~i~v~p~ 310 (332)
T 2bon_A 240 LINDGLLQLRIFTGD-EILPALVSTLKSDEDNPNIIEGASSWFDIQAP----HDITFNLDGEPLS----GQNFHIEILPA 310 (332)
T ss_dssp CTTSSCEEEEEECCS-SCCHHHHHHHHTTCCCTTEEEEEESEEEEEEE----EEEEEEETTEEEE----EEEEEEEEEEE
T ss_pred CCCCCeEEEEEECCH-HHHHHHHHHHHcCCCCCcEEEEEeeEEEEEEC----CCCeEEecCCCCC----CceEEEEEECC
Confidence 6789999999 885433 5666667777888752 2367999998764 57899999999
Q ss_pred eeeEEEecCCCCcHHH
Q psy5950 453 PVPSICAQDQIADWFD 468 (511)
Q Consensus 453 ~l~lI~~~~~~~~~f~ 468 (511)
.++++.++. .+++.
T Consensus 311 al~vl~p~~--~~~~~ 324 (332)
T 2bon_A 311 ALRCRLPPD--CPLLR 324 (332)
T ss_dssp EEEEEECTT--CTTSC
T ss_pred eeEEEeCCC--ccccc
Confidence 999998654 44443
No 10
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=98.71 E-value=1.3e-06 Score=87.43 Aligned_cols=251 Identities=16% Similarity=0.171 Sum_probs=134.5
Q ss_pred CCCcEEEEEecCC--ChhhHHHHHHHHHHHHhcCCeEEEEc-CCccccccccCCCCccccccccccccCCCCCCCCCccE
Q psy5950 169 KPPLTVLVIKKVR--DVSVLQPFVKLVKWLIQEKSMLVYVE-QSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDF 245 (511)
Q Consensus 169 ~~p~~VlII~K~~--~~~~~~~~~el~~~L~~~~~~~V~ve-~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~Dl 245 (511)
+++++++||.+|. +..+.+.+.++..+|.+.+ +.+.+. .....+ . . .+. .+..+.+|.
T Consensus 6 ~~m~~~~vi~Np~sG~~~~~~~~~~i~~~l~~~~-~~~~~~~t~~~~~-a-------~----~~~------~~~~~~~d~ 66 (304)
T 3s40_A 6 TKFEKVLLIVNPKAGQGDLHTNLTKIVPPLAAAF-PDLHILHTKEQGD-A-------T----KYC------QEFASKVDL 66 (304)
T ss_dssp CSCSSEEEEECTTCSSSCHHHHHHHHHHHHHHHC-SEEEEEECCSTTH-H-------H----HHH------HHHTTTCSE
T ss_pred CCCCEEEEEECcccCCCchHHHHHHHHHHHHHcC-CeEEEEEccCcch-H-------H----HHH------HHhhcCCCE
Confidence 4567899999885 3346677789999998754 343222 111110 0 0 000 011236899
Q ss_pred EEEEcCchhHHHHHHHcCC--CCCcEEEEeCCCccccc-cCC-cccHHHHHHHHHcCCcEEEEEeeE------E-EEEEe
Q psy5950 246 IICLGGDGTLLYASLLFQQ--SVPPVMAFHLGSLGFLT-PFE-FENFEDQVTNVLEGHAALTLRSRL------R-CIIMR 314 (511)
Q Consensus 246 VIvLGGDGTlL~Aar~~~~--~~~PILGINlG~LGFLt-~~~-~~~~~~~L~~il~G~~~ie~R~rL------~-v~V~~ 314 (511)
||++|||||+..++..+.. ..+|+..|.+|+...|+ .+. +.+++++++.+++|+..--...++ . +.+ .
T Consensus 67 vv~~GGDGTl~~v~~~l~~~~~~~~l~iiP~Gt~N~~ar~lg~~~~~~~a~~~i~~g~~~~iDlg~v~~~~F~~~~~~-G 145 (304)
T 3s40_A 67 IIVFGGDGTVFECTNGLAPLEIRPTLAIIPGGTCNDFSRTLGVPQNIAEAAKLITKEHVKPVDVAKANGQHFLNFWGI-G 145 (304)
T ss_dssp EEEEECHHHHHHHHHHHTTCSSCCEEEEEECSSCCHHHHHTTCCSSHHHHHHHHTTCCEEEEEEEEETTEEESSEEEE-C
T ss_pred EEEEccchHHHHHHHHHhhCCCCCcEEEecCCcHHHHHHHcCCCccHHHHHHHHHhCCeEEEEEEEECCEEEEEEEee-h
Confidence 9999999999999998876 68999999999998775 555 358999999999987432211111 0 100 0
Q ss_pred CCcccc-------cCCCCCCc--cceeeeEEeecCCCCcEEEEEEEECCEEEEEEecCeeEEcCCCchhHHHhhcCCCcc
Q psy5950 315 KNEETA-------KDAKPPTN--ILVLNEVVIDRGPSPYLSNIDLYLDGKLITSVQGDGLIVSTPTGSTAYAVAAGASMI 385 (511)
Q Consensus 315 ~~~~~~-------~~~~~~~~--~~ALNEVvI~Rg~~~~~~~i~v~idg~~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV 385 (511)
-+.... +....... ..+|..+. + .+-..++|.+||+.+. .++=.++|+- ++ | -.||..+
T Consensus 146 ~da~v~~~~~~~~k~~~G~~~Y~~~~l~~l~--~---~~~~~~~i~~dg~~~~-~~~~~v~v~N--~~--~--~Ggg~~~ 213 (304)
T 3s40_A 146 LVSEVSNNIDAEEKAKLGKIGYYLSTIRTVK--N---AETFPVKITYDGQVYE-DEAVLVMVGN--GE--Y--LGGIPSF 213 (304)
T ss_dssp ------------------CHHHHTTTC-----------CCEEEEEEETTEEEE-EEEEEEEEEC--SS--E--ETTEECS
T ss_pred HHHHHHHhcCHHHhhcCCchHHHHHHHHHHh--h---cCCceEEEEECCEEEE-eEEEEEEEEC--CC--c--CCCCccc
Confidence 000000 00000000 01122211 1 1234678889997642 2222344442 22 1 2344455
Q ss_pred CCC-------CCceEEEEcCCC--------CC----CCCCEEeCCCCEEEEEEccCCCCeEEEEEcCCceeecCCCCEEE
Q psy5950 386 HPS-------VPAIMVTPICPH--------SL----SFRPIVVPAGVELKISVSPDSRNTAWVSFDGRNRQELLHGDSLR 446 (511)
Q Consensus 386 ~P~-------v~aivITPIcPh--------sL----s~RPiVlp~~~~I~I~v~~~sr~~a~v~iDG~~~~~L~~Gd~V~ 446 (511)
.|+ ++++++.+.... .+ ..+.+..-...+++|+.. ....+.+||..... ..++
T Consensus 214 ~p~a~~~DG~Ldv~~v~~~~~~~l~~l~~~~~~g~~~~~~v~~~~~~~v~i~~~----~~~~~~~DGE~~~~----~p~~ 285 (304)
T 3s40_A 214 IPNVKCDDGTLDIFVVKSTGIQAFKDYIGKKLFEDSNENDIFHVKAKSIHIETE----EEKEVDTDGESSLH----TPCQ 285 (304)
T ss_dssp STTCCTTSSCEEEEEEETTCHHHHHHHTTCCCSSCCCTTTEEEEEESEEEEEES----SCCEEEEC--CCEE----SSEE
T ss_pred CCCCcCCCCEEEEEEEccCCHHHHHHHHHHHhcCCCCCCcEEEEEccEEEEEeC----CCcEEEeCCCCCCC----ceEE
Confidence 564 345666553320 00 111222223345555543 23578999987642 4588
Q ss_pred EEEcCceeeEEEe
Q psy5950 447 VTTSIYPVPSICA 459 (511)
Q Consensus 447 I~~S~~~l~lI~~ 459 (511)
|+..+..++++..
T Consensus 286 i~v~p~al~v~~p 298 (304)
T 3s40_A 286 IELLQGHFTMIYN 298 (304)
T ss_dssp EEEEEEEEEEECC
T ss_pred EEEECCeEEEEec
Confidence 8888888998865
No 11
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}
Probab=88.60 E-value=0.55 Score=44.80 Aligned_cols=36 Identities=22% Similarity=0.331 Sum_probs=28.1
Q ss_pred CCccEEEEEcCchh---------------HHHHHHHcCCCCCcEEEEeCCC
Q psy5950 241 DKIDFIICLGGDGT---------------LLYASLLFQQSVPPVMAFHLGS 276 (511)
Q Consensus 241 ~~~DlVIvLGGDGT---------------lL~Aar~~~~~~~PILGINlG~ 276 (511)
.++|.+|+.||-++ .+...+.+...++|||||-+|.
T Consensus 44 ~~~d~lii~GGp~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~PvLGIClG~ 94 (236)
T 3l7n_A 44 DDFDMLILMGGPQSPSSTKKEFPYYDAQAEVKLIQKAAKSEKIIVGVCLGA 94 (236)
T ss_dssp GGCSEEEECCCSSCTTCCTTTCTTCCHHHHHHHHHHHHHTTCEEEEETHHH
T ss_pred cccCEEEECCCCCCcccccccCcccchHHHHHHHHHHHHcCCCEEEEchHH
Confidence 46899999999877 4555665555689999999883
No 12
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A*
Probab=86.39 E-value=0.37 Score=49.00 Aligned_cols=52 Identities=25% Similarity=0.452 Sum_probs=37.7
Q ss_pred CccEEEEEcCchhHHHHHHHcCCCCCcEEEEeC-------C---CccccccCCcccHHHHHHHHH
Q psy5950 242 KIDFIICLGGDGTLLYASLLFQQSVPPVMAFHL-------G---SLGFLTPFEFENFEDQVTNVL 296 (511)
Q Consensus 242 ~~DlVIvLGGDGTlL~Aar~~~~~~~PILGINl-------G---~LGFLt~~~~~~~~~~L~~il 296 (511)
++|.+|++|||||+-.|.++ ....+|++||-- | ++||-|.++ .+.++++++.
T Consensus 93 ~Id~L~~IGGdgS~~~a~~l-~~~~i~vigiPkTIDNDl~~td~t~GfdTA~~--~~~~ai~~i~ 154 (319)
T 4a3s_A 93 GIEGLVVIGGDGSYMGAKKL-TEHGFPCVGVPGTIDNDIPGTDFTIGFDTALN--TVIDAIDKIR 154 (319)
T ss_dssp TCCEEEEEECTTHHHHHHHH-HHTTCCEEEEEEETTCCCTTCSCCEEHHHHHH--HHHHHHHHHH
T ss_pred CCCEEEEeCCcHHHHHHHHH-hccCCcEEEeeccccCCCCCCCCCCCHHHHHH--HHHHHHHHHH
Confidence 68999999999998766655 457899999842 2 678877644 3455555553
No 13
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=86.04 E-value=1.4 Score=45.51 Aligned_cols=88 Identities=14% Similarity=0.206 Sum_probs=52.4
Q ss_pred CcEEEEEecCCChhhHH--HHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEE
Q psy5950 171 PLTVLVIKKVRDVSVLQ--PFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIIC 248 (511)
Q Consensus 171 p~~VlII~K~~~~~~~~--~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIv 248 (511)
.++++||+- +..+.. ...++.+.|.+. ++.+.+-..+...+ ....+.+-...+ ...++|+||.
T Consensus 43 ~~r~liVtd--~~~~~~~g~~~~v~~~L~~~-g~~~~~f~~v~~~p------~~~~v~~~~~~~------~~~~~D~IIa 107 (407)
T 1vlj_A 43 IRKVLFLYG--GGSIKKNGVYDQVVDSLKKH-GIEWVEVSGVKPNP------VLSKVHEAVEVA------KKEKVEAVLG 107 (407)
T ss_dssp CCEEEEEEC--SSHHHHSSHHHHHHHHHHHT-TCEEEEECCCCSSC------BHHHHHHHHHHH------HHTTCSEEEE
T ss_pred CCeEEEEEC--chHHhhccHHHHHHHHHHHc-CCeEEEecCccCCC------CHHHHHHHHHHH------HhcCCCEEEE
Confidence 368999993 233444 578888888754 55544333222221 122221111111 1246799999
Q ss_pred EcCchhHHHHHHHcCC-------------------CCCcEEEEeC
Q psy5950 249 LGGDGTLLYASLLFQQ-------------------SVPPVMAFHL 274 (511)
Q Consensus 249 LGGDGTlL~Aar~~~~-------------------~~~PILGINl 274 (511)
+|| |+++-+++.+.- ..+|++.|-+
T Consensus 108 vGG-GsviD~AK~iA~~~~~~~~~~d~~~~~~~~~~~~p~i~IPT 151 (407)
T 1vlj_A 108 VGG-GSVVDSAKAVAAGALYEGDIWDAFIGKYQIEKALPIFDVLT 151 (407)
T ss_dssp EES-HHHHHHHHHHHHHTTCSSCGGGGGGTSCCCCCCCCEEEEEC
T ss_pred eCC-hhHHHHHHHHHHHHhCCCCHHHHhcccccCCCCCCEEEEeC
Confidence 999 999999986542 3678888875
No 14
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp}
Probab=85.82 E-value=0.47 Score=48.29 Aligned_cols=53 Identities=21% Similarity=0.257 Sum_probs=39.0
Q ss_pred CCccEEEEEcCchhHHHHHHHcCCCCCcEEEEeC-------C---CccccccCCcccHHHHHHHHH
Q psy5950 241 DKIDFIICLGGDGTLLYASLLFQQSVPPVMAFHL-------G---SLGFLTPFEFENFEDQVTNVL 296 (511)
Q Consensus 241 ~~~DlVIvLGGDGTlL~Aar~~~~~~~PILGINl-------G---~LGFLt~~~~~~~~~~L~~il 296 (511)
.++|.+|++|||||+-.|..+.. .++|++||-- | ++||-|.++ .+.++++++.
T Consensus 92 ~~Id~LvvIGGdgS~~~a~~L~~-~~i~vvgiPkTIDNDl~~td~t~GfdTA~~--~~~~aid~i~ 154 (319)
T 1zxx_A 92 HGIDAVVVIGGDGSYHGALQLTR-HGFNSIGLPGTIDNDIPYTDATIGYDTACM--TAMDAIDKIR 154 (319)
T ss_dssp TTCCEEEEEECHHHHHHHHHHHH-TTCCEEEEEEETTCCCTTCSCCEEHHHHHH--HHHHHHHHHH
T ss_pred hCCCEEEEECCchHHHHHHHHHH-hCCCEEEEeecccCCCCCCcCCCCHHHHHH--HHHHHHHHHH
Confidence 47899999999999988777764 4899999843 2 778877654 3445555543
No 15
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Probab=85.73 E-value=0.48 Score=48.26 Aligned_cols=53 Identities=25% Similarity=0.473 Sum_probs=39.2
Q ss_pred CCccEEEEEcCchhHHHHHHHcCCCCCcEEEEeC-------C---CccccccCCcccHHHHHHHHH
Q psy5950 241 DKIDFIICLGGDGTLLYASLLFQQSVPPVMAFHL-------G---SLGFLTPFEFENFEDQVTNVL 296 (511)
Q Consensus 241 ~~~DlVIvLGGDGTlL~Aar~~~~~~~PILGINl-------G---~LGFLt~~~~~~~~~~L~~il 296 (511)
.++|.+|++|||||+-.|..+.. .++|++||-- | ++||-|.++ .+.++++++.
T Consensus 93 ~~Id~LvvIGGdgS~~~a~~L~~-~~i~vvgiPkTIDNDl~~td~t~GfdTA~~--~~~~aid~i~ 155 (320)
T 1pfk_A 93 RGIDALVVIGGDGSYMGAMRLTE-MGFPCIGLPGTIDNDIKGTDYTIGFFTALS--TVVEAIDRLR 155 (320)
T ss_dssp TTCCEEEEEECHHHHHHHHHHHH-TTCCEEEEEBCTTCCCTTCSCCBTHHHHHH--HHHHHHHHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHh-hCCCEEEEeccccCCCCCCcCCCCHHHHHH--HHHHHHHHHH
Confidence 47899999999999988777764 5899999853 2 778877654 3455555543
No 16
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A
Probab=83.63 E-value=0.63 Score=49.05 Aligned_cols=44 Identities=14% Similarity=0.072 Sum_probs=34.6
Q ss_pred CCccEEEEEcCchhHHHHHHHcC-----CCCCcEEEEeC----------CCccccccCC
Q psy5950 241 DKIDFIICLGGDGTLLYASLLFQ-----QSVPPVMAFHL----------GSLGFLTPFE 284 (511)
Q Consensus 241 ~~~DlVIvLGGDGTlL~Aar~~~-----~~~~PILGINl----------G~LGFLt~~~ 284 (511)
.++|.+|++|||||+-.|..+.. ...+||+||-- -++||-|.++
T Consensus 103 ~~Id~Lv~IGGdgS~~~A~~L~~~~~~~g~~i~vIGiPkTIDNDl~~tD~t~GFdTA~~ 161 (419)
T 3hno_A 103 HDIGYFFYNGGGDSADTCLKVSQLSGTLGYPIQAIHVPKTVDNDLPITDCCPGFGSVAK 161 (419)
T ss_dssp TTEEEEEEEESHHHHHHHHHHHHHHHHTTCCCEEEEEECCTTCCCSSSSSCTTHHHHHH
T ss_pred cCCCEEEEeCCchHHHHHHHHHHHHHHhCCCccEEEecccccCCCcCCCCCCCchHHHH
Confidence 47899999999999988877764 35799999843 2778887654
No 17
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=82.90 E-value=1.8 Score=44.14 Aligned_cols=89 Identities=22% Similarity=0.284 Sum_probs=50.9
Q ss_pred cEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEEcC
Q psy5950 172 LTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICLGG 251 (511)
Q Consensus 172 ~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvLGG 251 (511)
++++||+-.+-......+.++.+.|.+. ++.+.+-..+.. ++....+.+-...+ ...++|+||.+||
T Consensus 41 ~~~liVtd~~~~~~~g~~~~v~~~L~~~-g~~~~~~~~~~~------~p~~~~v~~~~~~~------~~~~~d~IIavGG 107 (371)
T 1o2d_A 41 KRALVVTGKSSSKKNGSLDDLKKLLDET-EISYEIFDEVEE------NPSFDNVMKAVERY------RNDSFDFVVGLGG 107 (371)
T ss_dssp SEEEEEEESSGGGTSSHHHHHHHHHHHT-TCEEEEEEEECS------SCBHHHHHHHHHHH------TTSCCSEEEEEES
T ss_pred CEEEEEECchHHhhccHHHHHHHHHHHc-CCeEEEeCCccC------CCCHHHHHHHHHHH------HhcCCCEEEEeCC
Confidence 6899999532222223678888888754 444432221111 11222221111111 1236899999999
Q ss_pred chhHHHHHHHcCC-------------------CCCcEEEEeC
Q psy5950 252 DGTLLYASLLFQQ-------------------SVPPVMAFHL 274 (511)
Q Consensus 252 DGTlL~Aar~~~~-------------------~~~PILGINl 274 (511)
|+++-+++.+.. ..+|++.|-+
T Consensus 108 -Gsv~D~AK~iA~~~~~~~~~~~~~~~~~~~~~~~p~i~IPT 148 (371)
T 1o2d_A 108 -GSPMDFAKAVAVLLKEKDLSVEDLYDREKVKHWLPVVEIPT 148 (371)
T ss_dssp -HHHHHHHHHHHHHTTSTTCCSGGGGCGGGCCCCCCEEEEEC
T ss_pred -hHHHHHHHHHHHHHhCCCCCHHHHhcccCCCCCCeEEEEeC
Confidence 999999886542 4678888765
No 18
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=81.58 E-value=1.8 Score=44.21 Aligned_cols=90 Identities=20% Similarity=0.277 Sum_probs=50.7
Q ss_pred CcEEEEEecCCChhhH-HHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEE
Q psy5950 171 PLTVLVIKKVRDVSVL-QPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICL 249 (511)
Q Consensus 171 p~~VlII~K~~~~~~~-~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvL 249 (511)
.++++||+-..-.+.. ..+.++.+.|.+. ++.+.+-..+...+ ....+.+-...+ ...++|+||.+
T Consensus 33 ~~~~livtd~~~~~~~~g~~~~v~~~L~~~-g~~~~~~~~~~~~p------~~~~v~~~~~~~------~~~~~d~IIav 99 (387)
T 3bfj_A 33 GKKALLVTDKGLRAIKDGAVDKTLHYLREA-GIEVAIFDGVEPNP------KDTNVRDGLAVF------RREQCDIIVTV 99 (387)
T ss_dssp CSEEEEECCTTTC--CCSSHHHHHHHHHHT-TCEEEEECCCCSSC------BHHHHHHHHHHH------HHTTCCEEEEE
T ss_pred CCEEEEEECcchhhccchHHHHHHHHHHHc-CCeEEEECCccCCC------CHHHHHHHHHHH------HhcCCCEEEEe
Confidence 3689999943211110 1467888888754 55554333222221 122221111111 02467999999
Q ss_pred cCchhHHHHHHHcCC-------------------CCCcEEEEeC
Q psy5950 250 GGDGTLLYASLLFQQ-------------------SVPPVMAFHL 274 (511)
Q Consensus 250 GGDGTlL~Aar~~~~-------------------~~~PILGINl 274 (511)
|| |+++-+++.+.- ..+|++.|-+
T Consensus 100 GG-Gsv~D~aK~iA~~~~~~~~~~d~~~~~~~~~~~~p~i~IPT 142 (387)
T 3bfj_A 100 GG-GSPHDCGKGIGIAATHEGDLYQYAGIETLTNPLPPIVAVNT 142 (387)
T ss_dssp ES-HHHHHHHHHHHHHHHSSSCSGGGCBSSCCCSCCCCEEEEEC
T ss_pred CC-cchhhHHHHHHHHHhCCCCHHHHhcccccCCCCCCEEEEeC
Confidence 99 999999886542 3678888765
No 19
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A*
Probab=80.22 E-value=0.83 Score=49.10 Aligned_cols=53 Identities=23% Similarity=0.293 Sum_probs=39.4
Q ss_pred CccEEEEEcCchhHHHHHHHcC-----CCCCcEEEEeC-------C---CccccccCCcccHHHHHHHHH
Q psy5950 242 KIDFIICLGGDGTLLYASLLFQ-----QSVPPVMAFHL-------G---SLGFLTPFEFENFEDQVTNVL 296 (511)
Q Consensus 242 ~~DlVIvLGGDGTlL~Aar~~~-----~~~~PILGINl-------G---~LGFLt~~~~~~~~~~L~~il 296 (511)
++|.+|++|||||+-.|..+.. ...+||+||-- | ++||-|.++ .+.++|+++.
T Consensus 189 ~Id~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vVGIPkTIDNDl~gTD~T~GFdTAv~--~~~eaId~i~ 256 (487)
T 2hig_A 189 GVNILFTVGGDGTQRGALVISQEAKRRGVDISVFGVPKTIDNDLSFSHRTFGFQTAVE--KAVQAIRAAY 256 (487)
T ss_dssp TCSEEEEEECHHHHHHHHHHHHHHHHHTCCCEEEEEECCTTSSCCCSSCCTTHHHHHH--HHHHHHHHHH
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHHHhCCCceEEeccccccCCCCCCCCCCCHHHHHH--HHHHHHHHHH
Confidence 6899999999999988777653 24689999854 2 778887654 4555666554
No 20
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer, transferase; HET: FBP; 2.11A {Borrelia burgdorferi} SCOP: c.89.1.1 PDB: 1kzh_A*
Probab=79.43 E-value=0.91 Score=49.53 Aligned_cols=53 Identities=23% Similarity=0.391 Sum_probs=39.1
Q ss_pred CCccEEEEEcCchhHHHHHHHcCC-----CCCcEEEEeC-------C-----CccccccCCcccHHHHHHHH
Q psy5950 241 DKIDFIICLGGDGTLLYASLLFQQ-----SVPPVMAFHL-------G-----SLGFLTPFEFENFEDQVTNV 295 (511)
Q Consensus 241 ~~~DlVIvLGGDGTlL~Aar~~~~-----~~~PILGINl-------G-----~LGFLt~~~~~~~~~~L~~i 295 (511)
.++|.+|++|||||+-.|..+... ..+||+||-- | ++||-|.++ .+.++|.++
T Consensus 165 ~~Id~LvvIGGdgS~~~A~~L~e~~~~~~~~i~vIGiPkTIDNDl~~t~id~tiGFdTA~~--~~~~aId~i 234 (555)
T 2f48_A 165 NNLNAIIIIGGDDSNTNAAILAEYFKKNGENIQVIGVPKTIDADLRNDHIEISFGFDSATK--IYSELIGNL 234 (555)
T ss_dssp TTCSEEEEEESHHHHHHHHHHHHHHHHTTCCCEEEEEEEETTCCCCCSSCCCCEEHHHHHH--HHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHHHhCCCCcEEEeccccCCCCCCCcCCCCCChhHHHH--HHHHHHHHH
Confidence 478999999999999888876542 4799999842 2 667777654 455666666
No 21
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=79.30 E-value=6.6 Score=32.10 Aligned_cols=59 Identities=17% Similarity=0.278 Sum_probs=39.6
Q ss_pred ccEEEE----EcCch-hHHHHHHHcCCCCCcEEEEeC-------------CCccccc-cCCcccHHHHHHHHHcCCcE
Q psy5950 243 IDFIIC----LGGDG-TLLYASLLFQQSVPPVMAFHL-------------GSLGFLT-PFEFENFEDQVTNVLEGHAA 301 (511)
Q Consensus 243 ~DlVIv----LGGDG-TlL~Aar~~~~~~~PILGINl-------------G~LGFLt-~~~~~~~~~~L~~il~G~~~ 301 (511)
+|+||+ -|+|| .+++..+......+||+-+.. |-.+||. +++.+++...|+++..|...
T Consensus 53 ~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~ 130 (136)
T 3hdv_A 53 IGLMITDLRMQPESGLDLIRTIRASERAALSIIVVSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKIGEG 130 (136)
T ss_dssp EEEEEECSCCSSSCHHHHHHHHHTSTTTTCEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC----
T ss_pred CcEEEEeccCCCCCHHHHHHHHHhcCCCCCCEEEEeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHhcCchh
Confidence 787776 35566 455555554234678887643 6678886 89999999999999988643
No 22
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=79.24 E-value=19 Score=29.02 Aligned_cols=57 Identities=23% Similarity=0.317 Sum_probs=34.2
Q ss_pred CccEEEE----EcCch-hHHHHHHHcCCCCCcEEEEeC-------------CCccccc-cC-CcccHHHHHHHHHcCC
Q psy5950 242 KIDFIIC----LGGDG-TLLYASLLFQQSVPPVMAFHL-------------GSLGFLT-PF-EFENFEDQVTNVLEGH 299 (511)
Q Consensus 242 ~~DlVIv----LGGDG-TlL~Aar~~~~~~~PILGINl-------------G~LGFLt-~~-~~~~~~~~L~~il~G~ 299 (511)
.+|+||+ -|+|| .+++..+... ..+||+-+.. |-.+||. ++ +.+++...|++++.+.
T Consensus 51 ~~dlvi~d~~l~~~~g~~~~~~l~~~~-~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l~~~ 127 (130)
T 3eod_A 51 TPDLMICDIAMPRMNGLKLLEHIRNRG-DQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 (130)
T ss_dssp CCSEEEECCC-----CHHHHHHHHHTT-CCCCEEEEECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHHC--
T ss_pred CCCEEEEecCCCCCCHHHHHHHHHhcC-CCCCEEEEEcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHhchh
Confidence 4687776 34555 4556565532 3678876643 6667876 78 7888999998888764
No 23
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=79.23 E-value=16 Score=29.83 Aligned_cols=57 Identities=16% Similarity=0.144 Sum_probs=37.6
Q ss_pred CCccEEEEE----cCch-hHHHHHHHcCCCCCcEEEEeC-------------CCccccc-cCCcccHHHHHHHHHcC
Q psy5950 241 DKIDFIICL----GGDG-TLLYASLLFQQSVPPVMAFHL-------------GSLGFLT-PFEFENFEDQVTNVLEG 298 (511)
Q Consensus 241 ~~~DlVIvL----GGDG-TlL~Aar~~~~~~~PILGINl-------------G~LGFLt-~~~~~~~~~~L~~il~G 298 (511)
..+|+||+= |.|| .+++..+.... .+||+-+.. |-.+||. +++++++...|.+++.|
T Consensus 58 ~~~dlvi~D~~l~~~~g~~~~~~l~~~~~-~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 133 (135)
T 3snk_A 58 TRPGIVILDLGGGDLLGKPGIVEARALWA-TVPLIAVSDELTSEQTRVLVRMNASDWLHKPLDGKELLNAVTFHDTG 133 (135)
T ss_dssp CCCSEEEEEEETTGGGGSTTHHHHHGGGT-TCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTC--
T ss_pred cCCCEEEEeCCCCCchHHHHHHHHHhhCC-CCcEEEEeCCCCHHHHHHHHHcCcHhhccCCCCHHHHHHHHHHHhcc
Confidence 357888772 5566 35666665443 678886643 6667886 88888888888887765
No 24
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=79.10 E-value=2.2 Score=43.98 Aligned_cols=74 Identities=19% Similarity=0.319 Sum_probs=41.3
Q ss_pred cEEEEEecCCChhhHH--HHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEE
Q psy5950 172 LTVLVIKKVRDVSVLQ--PFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICL 249 (511)
Q Consensus 172 ~~VlII~K~~~~~~~~--~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvL 249 (511)
++++||+- +..+.. ...++.+.|. ++.+.+-...... +....+.+-...+ ...++|+||.|
T Consensus 51 ~r~liVtd--~~~~~~~g~~~~v~~~L~---g~~~~~f~~v~~~------p~~~~v~~~~~~~------~~~~~D~IIav 113 (408)
T 1oj7_A 51 ARVLITYG--GGSVKKTGVLDQVLDALK---GMDVLEFGGIEPN------PAYETLMNAVKLV------REQKVTFLLAV 113 (408)
T ss_dssp CEEEEEEC--SSHHHHHSHHHHHHHHTT---TSEEEEECCCCSS------CBHHHHHHHHHHH------HHHTCCEEEEE
T ss_pred CEEEEEEC--CchhhhccHHHHHHHHhC---CCEEEEeCCcCCC------cCHHHHHHHHHHH------HHcCCCEEEEe
Confidence 78999983 232333 5677777774 4444433322221 1222221111111 02357999999
Q ss_pred cCchhHHHHHHHcC
Q psy5950 250 GGDGTLLYASLLFQ 263 (511)
Q Consensus 250 GGDGTlL~Aar~~~ 263 (511)
|| |+++-+++.+.
T Consensus 114 GG-GsviD~AK~iA 126 (408)
T 1oj7_A 114 GG-GSVLDGTKFIA 126 (408)
T ss_dssp ES-HHHHHHHHHHH
T ss_pred CC-chHHHHHHHHH
Confidence 99 99999988653
No 25
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=78.80 E-value=9.7 Score=32.24 Aligned_cols=104 Identities=17% Similarity=0.174 Sum_probs=62.7
Q ss_pred CCcEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEE-
Q psy5950 170 PPLTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIIC- 248 (511)
Q Consensus 170 ~p~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIv- 248 (511)
++.+|+||- +++.... .+..+|.+ .+..|..-.+..+. + ... . ...+|+||+
T Consensus 6 ~~~~ILivd--d~~~~~~---~l~~~L~~-~g~~v~~~~~~~~a--l-------------~~l----~--~~~~dlii~D 58 (154)
T 3gt7_A 6 RAGEILIVE--DSPTQAE---HLKHILEE-TGYQTEHVRNGREA--V-------------RFL----S--LTRPDLIISD 58 (154)
T ss_dssp -CCEEEEEC--SCHHHHH---HHHHHHHT-TTCEEEEESSHHHH--H-------------HHH----T--TCCCSEEEEE
T ss_pred CCCcEEEEe--CCHHHHH---HHHHHHHH-CCCEEEEeCCHHHH--H-------------HHH----H--hCCCCEEEEe
Confidence 456899997 4555444 34555554 35555433322211 0 000 0 134788887
Q ss_pred ---EcCch-hHHHHHHHcCC-CCCcEEEEe-------------CCCccccc-cCCcccHHHHHHHHHcCCc
Q psy5950 249 ---LGGDG-TLLYASLLFQQ-SVPPVMAFH-------------LGSLGFLT-PFEFENFEDQVTNVLEGHA 300 (511)
Q Consensus 249 ---LGGDG-TlL~Aar~~~~-~~~PILGIN-------------lG~LGFLt-~~~~~~~~~~L~~il~G~~ 300 (511)
-|.|| .+++..+.... ..+||+-+. .|-.+||. +++.+++...|.+++.+.-
T Consensus 59 ~~l~~~~g~~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~ 129 (154)
T 3gt7_A 59 VLMPEMDGYALCRWLKGQPDLRTIPVILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSGVK 129 (154)
T ss_dssp SCCSSSCHHHHHHHHHHSTTTTTSCEEEEECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHhCCCcCCCCEEEEECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 25676 45666665432 467888765 26778886 8999999999999988653
No 26
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=78.70 E-value=14 Score=29.92 Aligned_cols=56 Identities=27% Similarity=0.390 Sum_probs=38.2
Q ss_pred CccEEEE----EcCch-hHHHHHHHcCC-CCCcEEEEe-------------CCCccccc-cCCcccHHHHHHHHHc
Q psy5950 242 KIDFIIC----LGGDG-TLLYASLLFQQ-SVPPVMAFH-------------LGSLGFLT-PFEFENFEDQVTNVLE 297 (511)
Q Consensus 242 ~~DlVIv----LGGDG-TlL~Aar~~~~-~~~PILGIN-------------lG~LGFLt-~~~~~~~~~~L~~il~ 297 (511)
.+|+||+ =|.|| .+++..+.... ..+||+-+. .|--+||. +++++++...|.++++
T Consensus 46 ~~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 46 TPDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp CCSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred CCCEEEEeccCCCCcHHHHHHHHHhcccccCCCEEEEecCCchHHHHHHHhcChhhhccCCCCHHHHHHHHHHHhc
Confidence 4688777 36677 45555554322 467888664 36678886 8888888888888764
No 27
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=78.61 E-value=9.3 Score=37.58 Aligned_cols=58 Identities=21% Similarity=0.228 Sum_probs=44.8
Q ss_pred CCCCCCccEEEEEcCchhHHHHHHHcCCCCCcEEEEeCC-------------CccccccC---CcccHHHHHHHHHcC
Q psy5950 237 DDLTDKIDFIICLGGDGTLLYASLLFQQSVPPVMAFHLG-------------SLGFLTPF---EFENFEDQVTNVLEG 298 (511)
Q Consensus 237 ~~~~~~~DlVIvLGGDGTlL~Aar~~~~~~~PILGINlG-------------~LGFLt~~---~~~~~~~~L~~il~G 298 (511)
.++...+|++|+=||=+|++.|+.. ++|++.+..+ ..|++.+. +.+++.++|.++++.
T Consensus 303 ~~~l~~ad~~v~~~g~~t~~Ea~a~----G~P~v~~p~~~~q~~~~~~v~~~g~g~~~~~~~~~~~~l~~ai~~ll~~ 376 (412)
T 3otg_A 303 AALLPHVDLVVHHGGSGTTLGALGA----GVPQLSFPWAGDSFANAQAVAQAGAGDHLLPDNISPDSVSGAAKRLLAE 376 (412)
T ss_dssp HHHGGGCSEEEESCCHHHHHHHHHH----TCCEEECCCSTTHHHHHHHHHHHTSEEECCGGGCCHHHHHHHHHHHHHC
T ss_pred HHHHhcCcEEEECCchHHHHHHHHh----CCCEEecCCchhHHHHHHHHHHcCCEEecCcccCCHHHHHHHHHHHHhC
Confidence 3445678999999999999998866 7899987553 35777643 677888899888864
No 28
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=78.13 E-value=17 Score=29.74 Aligned_cols=61 Identities=23% Similarity=0.352 Sum_probs=40.8
Q ss_pred CCccEEEE---E--cCch-hHHHHHHHc-CCCCCcEEEEe-------------CCCccccc-cCCcccHHHHHHHHHcCC
Q psy5950 241 DKIDFIIC---L--GGDG-TLLYASLLF-QQSVPPVMAFH-------------LGSLGFLT-PFEFENFEDQVTNVLEGH 299 (511)
Q Consensus 241 ~~~DlVIv---L--GGDG-TlL~Aar~~-~~~~~PILGIN-------------lG~LGFLt-~~~~~~~~~~L~~il~G~ 299 (511)
..+|+||+ + |.|| .+++..+.. ....+||+-+. .|-.+||. +++.+++...|++++++.
T Consensus 49 ~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 128 (140)
T 3lua_A 49 DSITLIIMDIAFPVEKEGLEVLSAIRNNSRTANTPVIIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVLKIC 128 (140)
T ss_dssp CCCSEEEECSCSSSHHHHHHHHHHHHHSGGGTTCCEEEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHHCC-
T ss_pred CCCcEEEEeCCCCCCCcHHHHHHHHHhCcccCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhc
Confidence 45788887 2 4455 345555541 12467888764 36678887 899999999999999886
Q ss_pred cE
Q psy5950 300 AA 301 (511)
Q Consensus 300 ~~ 301 (511)
..
T Consensus 129 ~~ 130 (140)
T 3lua_A 129 QR 130 (140)
T ss_dssp --
T ss_pred cc
Confidence 44
No 29
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=78.12 E-value=2.1 Score=43.80 Aligned_cols=85 Identities=16% Similarity=0.148 Sum_probs=51.9
Q ss_pred CcEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEEc
Q psy5950 171 PLTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICLG 250 (511)
Q Consensus 171 p~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvLG 250 (511)
.++++||+- +.......++.+.|.+. ++.+| ..+..+ +....+.+-...+. ..++|+||.+|
T Consensus 36 ~~r~liVtd---~~~~~~~~~v~~~L~~~-~~~~f--~~v~~~------p~~~~v~~~~~~~~------~~~~D~IIavG 97 (358)
T 3jzd_A 36 AKRALVLCT---PNQQAEAERIADLLGPL-SAGVY--AGAVMH------VPIESARDATARAR------EAGADCAVAVG 97 (358)
T ss_dssp CSCEEEECC---GGGHHHHHHHHHHHGGG-EEEEE--CCCCTT------CBHHHHHHHHHHHH------HHTCSEEEEEE
T ss_pred CCeEEEEeC---CcHHHHHHHHHHHhccC-CEEEe--cCCcCC------CCHHHHHHHHHHhh------ccCCCEEEEeC
Confidence 468999984 34556678888888753 33333 222211 11111211111110 23689999999
Q ss_pred CchhHHHHHHHcCC-CCCcEEEEeC
Q psy5950 251 GDGTLLYASLLFQQ-SVPPVMAFHL 274 (511)
Q Consensus 251 GDGTlL~Aar~~~~-~~~PILGINl 274 (511)
| |+.+-+++.+.. ..+|++.|.+
T Consensus 98 G-GsviD~aK~iA~~~~~p~i~IPT 121 (358)
T 3jzd_A 98 G-GSTTGLGKAIALETGMPIVAIPT 121 (358)
T ss_dssp S-HHHHHHHHHHHHHHCCCEEEEEC
T ss_pred C-cHHHHHHHHHHhccCCCEEEEeC
Confidence 9 999999987653 5789999886
No 30
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=77.76 E-value=2.1 Score=41.66 Aligned_cols=35 Identities=23% Similarity=0.202 Sum_probs=24.5
Q ss_pred CCccEEEEEcCchh----------HHHHHHHcCCCCCcEEEEeCC
Q psy5950 241 DKIDFIICLGGDGT----------LLYASLLFQQSVPPVMAFHLG 275 (511)
Q Consensus 241 ~~~DlVIvLGGDGT----------lL~Aar~~~~~~~PILGINlG 275 (511)
.++|.+|+.||-++ ++...+.+...++|||||-+|
T Consensus 47 ~~~d~lIl~GGp~~~~d~~~~~~~~~~~i~~~~~~~~PvlGIC~G 91 (250)
T 3m3p_A 47 RDCSGLAMMGGPMSANDDLPWMPTLLALIRDAVAQRVPVIGHCLG 91 (250)
T ss_dssp GGSSEEEECCCSSCTTSCCTTHHHHHHHHHHHHHHTCCEEEETHH
T ss_pred ccCCEEEECCCCCcccccchHHHHHHHHHHHHHHcCCCEEEECHH
Confidence 46899999999765 223333333457999999987
No 31
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=77.61 E-value=2.6 Score=36.77 Aligned_cols=54 Identities=15% Similarity=0.186 Sum_probs=42.4
Q ss_pred CCccEEEEEcCchhHHHHHHHcCCCCCcEEEEeC-------------CCcccccc---CCcccHHHHHHHHHcC
Q psy5950 241 DKIDFIICLGGDGTLLYASLLFQQSVPPVMAFHL-------------GSLGFLTP---FEFENFEDQVTNVLEG 298 (511)
Q Consensus 241 ~~~DlVIvLGGDGTlL~Aar~~~~~~~PILGINl-------------G~LGFLt~---~~~~~~~~~L~~il~G 298 (511)
..+|++|+-||-||++.|+.. ++|++.+.. ...|++.+ ++.+++.++|.++++.
T Consensus 85 ~~ad~~I~~~G~~t~~Ea~~~----G~P~i~~p~~~~Q~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~ 154 (170)
T 2o6l_A 85 PKTRAFITHGGANGIYEAIYH----GIPMVGIPLFADQPDNIAHMKARGAAVRVDFNTMSSTDLLNALKRVIND 154 (170)
T ss_dssp TTEEEEEECCCHHHHHHHHHH----TCCEEECCCSTTHHHHHHHHHTTTSEEECCTTTCCHHHHHHHHHHHHHC
T ss_pred CCcCEEEEcCCccHHHHHHHc----CCCEEeccchhhHHHHHHHHHHcCCeEEeccccCCHHHHHHHHHHHHcC
Confidence 679999999999999998876 789999865 24566654 3567788888888754
No 32
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=76.98 E-value=1.7 Score=44.62 Aligned_cols=87 Identities=22% Similarity=0.334 Sum_probs=51.6
Q ss_pred CcEEEEEecCCChhhHH--HHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEE
Q psy5950 171 PLTVLVIKKVRDVSVLQ--PFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIIC 248 (511)
Q Consensus 171 p~~VlII~K~~~~~~~~--~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIv 248 (511)
.++++||+- +.+.+ ...++.+.|.+. ++.+.+-..+.. ++....+.+-...+. ..++|+||.
T Consensus 31 ~~~~liVtd---~~~~~~g~~~~v~~~L~~~-gi~~~~~~~v~~------~p~~~~v~~~~~~~~------~~~~D~IIa 94 (383)
T 3ox4_A 31 FKNALIVSD---AFMNKSGVVKQVADLLKAQ-GINSAVYDGVMP------NPTVTAVLEGLKILK------DNNSDFVIS 94 (383)
T ss_dssp CCEEEEEEE---HHHHHTTHHHHHHHHHHTT-TCEEEEEEEECS------SCBHHHHHHHHHHHH------HHTCSEEEE
T ss_pred CCEEEEEEC---CchhhCchHHHHHHHHHHc-CCeEEEECCccC------CCCHHHHHHHHHHHH------hcCcCEEEE
Confidence 478999993 44544 478889989754 555433222211 122222221111111 136799999
Q ss_pred EcCchhHHHHHHHcCC-------------------CCCcEEEEeC
Q psy5950 249 LGGDGTLLYASLLFQQ-------------------SVPPVMAFHL 274 (511)
Q Consensus 249 LGGDGTlL~Aar~~~~-------------------~~~PILGINl 274 (511)
+|| |+++-+++.+.- ..+|++.|.+
T Consensus 95 vGG-Gsv~D~aK~ia~~~~~~~~~~d~~~~~~~~~~~~p~i~IPT 138 (383)
T 3ox4_A 95 LGG-GSPHDCAKAIALVATNGGEVKDYEGIDKSKKPALPLMSINT 138 (383)
T ss_dssp EES-HHHHHHHHHHHHHHHSCSSGGGGCEESCCSSCCSCEEEEEC
T ss_pred eCC-cHHHHHHHHHHHHHhCCCCHHHHhcccccccCCCCEEEEeC
Confidence 999 999999886531 2678888875
No 33
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=76.81 E-value=2.8 Score=42.74 Aligned_cols=85 Identities=15% Similarity=0.140 Sum_probs=51.6
Q ss_pred CcEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEEc
Q psy5950 171 PLTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICLG 250 (511)
Q Consensus 171 p~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvLG 250 (511)
.++++||+- +.......++.+.|.+. ++.+| ..+..+ +....+.+-...+. ..++|+||.+|
T Consensus 34 ~~r~liVtd---~~~~~~~~~v~~~L~~~-~~~v~--~~v~~~------p~~~~v~~~~~~~~------~~~~D~IIavG 95 (353)
T 3hl0_A 34 LSRALVLST---PQQKGDAEALASRLGRL-AAGVF--SEAAMH------TPVEVTKTAVEAYR------AAGADCVVSLG 95 (353)
T ss_dssp CCCEEEECC---GGGHHHHHHHHHHHGGG-EEEEE--CCCCTT------CBHHHHHHHHHHHH------HTTCSEEEEEE
T ss_pred CCEEEEEec---CchhhHHHHHHHHHhhC-CcEEe--cCcCCC------CcHHHHHHHHHHHh------ccCCCEEEEeC
Confidence 467999984 33456678888888753 33433 222211 11112211111110 24689999999
Q ss_pred CchhHHHHHHHcCC-CCCcEEEEeC
Q psy5950 251 GDGTLLYASLLFQQ-SVPPVMAFHL 274 (511)
Q Consensus 251 GDGTlL~Aar~~~~-~~~PILGINl 274 (511)
| |+.+-+++.+.. ..+|++.|.+
T Consensus 96 G-Gs~iD~aK~iA~~~~~p~i~IPT 119 (353)
T 3hl0_A 96 G-GSTTGLGKAIALRTDAAQIVIPT 119 (353)
T ss_dssp S-HHHHHHHHHHHHHHCCEEEEEEC
T ss_pred C-cHHHHHHHHHHhccCCCEEEEeC
Confidence 9 999999987653 5789998876
No 34
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=76.59 E-value=3.2 Score=42.29 Aligned_cols=87 Identities=22% Similarity=0.381 Sum_probs=51.8
Q ss_pred CcEEEEEecCCChhhHH--HHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEE
Q psy5950 171 PLTVLVIKKVRDVSVLQ--PFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIIC 248 (511)
Q Consensus 171 p~~VlII~K~~~~~~~~--~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIv 248 (511)
.++++||+ ++.+.+ .+.++.+.|.+. ++.+.+-..+... +....+.+-...+. ..++|+||.
T Consensus 31 ~~~~livt---d~~~~~~g~~~~v~~~L~~~-g~~~~~~~~~~~~------p~~~~v~~~~~~~~------~~~~d~IIa 94 (386)
T 1rrm_A 31 YQKALIVT---DKTLVQCGVVAKVTDKMDAA-GLAWAIYDGVVPN------PTITVVKEGLGVFQ------NSGADYLIA 94 (386)
T ss_dssp CCEEEEEC---BHHHHHTTHHHHHHHHHHHT-TCEEEEECBCCSS------CBHHHHHHHHHHHH------HHTCSEEEE
T ss_pred CCEEEEEE---CcchhhchHHHHHHHHHHHc-CCeEEEECCccCC------CCHHHHHHHHHHHH------hcCcCEEEE
Confidence 46899998 344544 578888989754 5555433322221 11222211111110 235799999
Q ss_pred EcCchhHHHHHHHcC---------------------CCCCcEEEEeC
Q psy5950 249 LGGDGTLLYASLLFQ---------------------QSVPPVMAFHL 274 (511)
Q Consensus 249 LGGDGTlL~Aar~~~---------------------~~~~PILGINl 274 (511)
+|| |+++-+++.+. ...+|++.|-+
T Consensus 95 vGG-Gsv~D~aK~iA~~~~~~~~~~~~d~~~~~~~~~~~~p~i~IPT 140 (386)
T 1rrm_A 95 IGG-GSPQDTCKAIGIISNNPEFADVRSLEGLSPTNKPSVPILAIPT 140 (386)
T ss_dssp EES-HHHHHHHHHHHHHHHCGGGTTSGGGSEECCCCSCCSCEEEEEC
T ss_pred eCC-hHHHHHHHHHHHHHhCCCCCCHHHHhcccccCCCCCCEEEEeC
Confidence 999 99999988653 22678888875
No 35
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=76.51 E-value=13 Score=30.45 Aligned_cols=102 Identities=14% Similarity=0.179 Sum_probs=58.5
Q ss_pred cCCCCcEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEE
Q psy5950 167 WYKPPLTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFI 246 (511)
Q Consensus 167 w~~~p~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlV 246 (511)
|.....+|+||- +++..... +...|.. .+..|..-....+. + ..+. ...+|+|
T Consensus 14 ~~~~~~~ilivd--d~~~~~~~---l~~~L~~-~g~~v~~~~~~~~a--l----------~~l~---------~~~~dlv 66 (137)
T 2pln_A 14 VPRGSMRVLLIE--KNSVLGGE---IEKGLNV-KGFMADVTESLEDG--E----------YLMD---------IRNYDLV 66 (137)
T ss_dssp -CTTCSEEEEEC--SCHHHHHH---HHHHHHH-TTCEEEEESCHHHH--H----------HHHH---------HSCCSEE
T ss_pred cCCCCCeEEEEe--CCHHHHHH---HHHHHHH-cCcEEEEeCCHHHH--H----------HHHH---------cCCCCEE
Confidence 345567899997 45655544 4444544 34555433221111 0 0011 1257999
Q ss_pred EEEcC-ch-hHHHHHHHcCCC-CCcEEEEe-------------CCCccccc-cC-CcccHHHHHHHHHcC
Q psy5950 247 ICLGG-DG-TLLYASLLFQQS-VPPVMAFH-------------LGSLGFLT-PF-EFENFEDQVTNVLEG 298 (511)
Q Consensus 247 IvLGG-DG-TlL~Aar~~~~~-~~PILGIN-------------lG~LGFLt-~~-~~~~~~~~L~~il~G 298 (511)
| +.+ || .++...+.. . .+||+-+. .|-.+||. ++ +.+++...|.+++.+
T Consensus 67 i-~~~~~g~~~~~~l~~~--~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~~ 133 (137)
T 2pln_A 67 M-VSDKNALSFVSRIKEK--HSSIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRF 133 (137)
T ss_dssp E-ECSTTHHHHHHHHHHH--STTSEEEEEESSCCHHHHHHHHHTTCSEEEESSCSCHHHHHHHHHHHTC-
T ss_pred E-EcCccHHHHHHHHHhc--CCCccEEEEeCCCCHHHHHHHHHcCCceeeeCCCCCHHHHHHHHHHHHhh
Confidence 9 654 55 245555544 4 67888764 36678886 78 888888888888765
No 36
>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte tuberculosis, nicotinamide adenine dinucleotide (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis} PDB: 3qbd_A
Probab=75.67 E-value=5.4 Score=41.14 Aligned_cols=89 Identities=12% Similarity=0.078 Sum_probs=51.6
Q ss_pred cEEEEEecCCChhhHHHHHHHHHHHHhcCCeEE--EEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEE
Q psy5950 172 LTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLV--YVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICL 249 (511)
Q Consensus 172 ~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V--~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvL 249 (511)
++++||+ |+.+.+...++.+.|.+. ++.+ ++-...-..+.+. ....+.+.+..+ -..+.|+||.+
T Consensus 44 ~rvlIVt---d~~v~~~~~~v~~~L~~~-g~~~~~~~~~~gE~~kt~~---~v~~~~~~l~~~------~~~r~d~IIav 110 (368)
T 3qbe_A 44 HKVAVVH---QPGLAETAEEIRKRLAGK-GVDAHRIEIPDAEAGKDLP---VVGFIWEVLGRI------GIGRKDALVSL 110 (368)
T ss_dssp SEEEEEE---CGGGHHHHHHHHHHHHHT-TCEEEEEECCSGGGGGBHH---HHHHHHHHHHHH------TCCTTCEEEEE
T ss_pred CEEEEEE---CccHHHHHHHHHHHHHhc-CCcceEEEeCCCCCCCCHH---HHHHHHHHHHHc------CCCCCcEEEEE
Confidence 7999999 444556678899999865 4443 2222211111110 011111111111 12357999999
Q ss_pred cCchhHHHHHHHcC---CCCCcEEEEeC
Q psy5950 250 GGDGTLLYASLLFQ---QSVPPVMAFHL 274 (511)
Q Consensus 250 GGDGTlL~Aar~~~---~~~~PILGINl 274 (511)
|| |.++-++..+. ..++|++-|-+
T Consensus 111 GG-Gsv~D~ak~~Aa~~~rgip~i~IPT 137 (368)
T 3qbe_A 111 GG-GAATDVAGFAAATWLRGVSIVHLPT 137 (368)
T ss_dssp ES-HHHHHHHHHHHHHGGGCCEEEEEEC
T ss_pred CC-hHHHHHHHHHHHHhccCCcEEEECC
Confidence 99 99999888765 24788887765
No 37
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=74.34 E-value=4.6 Score=40.61 Aligned_cols=86 Identities=12% Similarity=0.056 Sum_probs=50.8
Q ss_pred CcEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEEc
Q psy5950 171 PLTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICLG 250 (511)
Q Consensus 171 p~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvLG 250 (511)
.++++||+-..- ......++.+.|++. ++.+.+-.. ...+ ....+.+ +..+ ...++|+||.+|
T Consensus 34 ~~~~livtd~~~--~~~~~~~v~~~L~~~-g~~~~~~~~-~~~~------~~~~v~~-~~~~------~~~~~d~IIavG 96 (354)
T 3ce9_A 34 FKRVSLYFGEGI--YELFGETIEKSIKSS-NIEIEAVET-VKNI------DFDEIGT-NAFK------IPAEVDALIGIG 96 (354)
T ss_dssp CSEEEEEEETTH--HHHHHHHHHHHHHTT-TCEEEEEEE-ECCC------BHHHHHH-HHTT------SCTTCCEEEEEE
T ss_pred CCeEEEEECccH--HHHHHHHHHHHHHHc-CCeEEEEec-CCCC------CHHHHHH-HHHh------hhcCCCEEEEEC
Confidence 368999995332 223567888888754 444322111 1111 1111111 1111 125689999999
Q ss_pred CchhHHHHHHHcCC-CCCcEEEEeC
Q psy5950 251 GDGTLLYASLLFQQ-SVPPVMAFHL 274 (511)
Q Consensus 251 GDGTlL~Aar~~~~-~~~PILGINl 274 (511)
| |+++-+++.+.. ..+|++.|-+
T Consensus 97 G-Gsv~D~aK~vA~~~~~p~i~IPT 120 (354)
T 3ce9_A 97 G-GKAIDAVKYMAFLRKLPFISVPT 120 (354)
T ss_dssp S-HHHHHHHHHHHHHHTCCEEEEES
T ss_pred C-hHHHHHHHHHHhhcCCCEEEecC
Confidence 9 999999997663 4789998875
No 38
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=73.50 E-value=18 Score=29.03 Aligned_cols=54 Identities=20% Similarity=0.320 Sum_probs=36.5
Q ss_pred CccEEEE----EcCch-hHHHHHHHcCCCCCcEEEEe-------------CCCccccc-cCCcccHHHHHHHHHc
Q psy5950 242 KIDFIIC----LGGDG-TLLYASLLFQQSVPPVMAFH-------------LGSLGFLT-PFEFENFEDQVTNVLE 297 (511)
Q Consensus 242 ~~DlVIv----LGGDG-TlL~Aar~~~~~~~PILGIN-------------lG~LGFLt-~~~~~~~~~~L~~il~ 297 (511)
.+|+||+ =|+|| .+++..+.. ...||+-+. .|-.+||. |++.+++...|.+++.
T Consensus 46 ~~dlii~D~~~p~~~g~~~~~~lr~~--~~~~ii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~l~ 118 (120)
T 3f6p_A 46 QPDLILLDIMLPNKDGVEVCREVRKK--YDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLR 118 (120)
T ss_dssp CCSEEEEETTSTTTHHHHHHHHHHTT--CCSCEEEEEESSCHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc--CCCCEEEEECCCChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHh
Confidence 4788877 25566 455555542 367887654 36677886 8888888888887765
No 39
>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, open form, form B, domain movement, cyclase; HET: NAD; 2.20A {Staphylococcus aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A*
Probab=73.09 E-value=4.5 Score=40.87 Aligned_cols=89 Identities=12% Similarity=0.022 Sum_probs=45.9
Q ss_pred cEEEEEecCCChhhHH-HHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEEc
Q psy5950 172 LTVLVIKKVRDVSVLQ-PFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICLG 250 (511)
Q Consensus 172 ~~VlII~K~~~~~~~~-~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvLG 250 (511)
++++||+- +.+.+ ...++.+.| +.+.+.+++-......+ .+..+.+-...+. +.-.+..|+||.+|
T Consensus 32 ~~~liVtd---~~~~~~~~~~v~~~L-~~g~~~~~~~~~~e~~p------~~~~v~~~~~~~~---~~~~~r~d~iIavG 98 (354)
T 1xah_A 32 DQSFLLID---EYVNQYFANKFDDIL-SYENVHKVIIPAGEKTK------TFEQYQETLEYIL---SHHVTRNTAIIAVG 98 (354)
T ss_dssp SCEEEEEE---HHHHHHHHHHHC-------CEEEEEECSGGGGC------SHHHHHHHHHHHH---TTCCCTTCEEEEEE
T ss_pred CeEEEEEC---CcHHHHHHHHHHHHH-hcCCeEEEEECCCCCCC------CHHHHHHHHHHHH---HcCCCCCceEEEEC
Confidence 67999983 44443 456777777 54324433322222211 1111111111110 11122349999999
Q ss_pred CchhHHHHHHHcC---CCCCcEEEEeC
Q psy5950 251 GDGTLLYASLLFQ---QSVPPVMAFHL 274 (511)
Q Consensus 251 GDGTlL~Aar~~~---~~~~PILGINl 274 (511)
| |+++-+++.+. ...+|++.|-+
T Consensus 99 G-Gsv~D~ak~vA~~~~rgip~i~IPT 124 (354)
T 1xah_A 99 G-GATGDFAGFVAATLLRGVHFIQVPT 124 (354)
T ss_dssp S-HHHHHHHHHHHHHBTTCCEEEEEEC
T ss_pred C-hHHHHHHHHHHHHhccCCCEEEECC
Confidence 9 99999998765 46789998876
No 40
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=73.03 E-value=13 Score=30.69 Aligned_cols=105 Identities=14% Similarity=0.158 Sum_probs=59.7
Q ss_pred CCCcEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCC-CCccEEE
Q psy5950 169 KPPLTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLT-DKIDFII 247 (511)
Q Consensus 169 ~~p~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~-~~~DlVI 247 (511)
.+..+|+||- +++..... +..+|.+.+...|.......+. +. .+.. . ..+|+||
T Consensus 18 ~~~~~ilivd--d~~~~~~~---l~~~L~~~g~~~v~~~~~~~~~--~~----------~~~~--------~~~~~dlvi 72 (146)
T 4dad_A 18 QGMINILVAS--EDASRLAH---LARLVGDAGRYRVTRTVGRAAQ--IV----------QRTD--------GLDAFDILM 72 (146)
T ss_dssp GGGCEEEEEC--SCHHHHHH---HHHHHHHHCSCEEEEECCCHHH--HT----------TCHH--------HHTTCSEEE
T ss_pred CCCCeEEEEe--CCHHHHHH---HHHHHhhCCCeEEEEeCCHHHH--HH----------HHHh--------cCCCCCEEE
Confidence 3466899997 45655444 4555555443565543322211 00 0000 1 3578777
Q ss_pred E----EcCch-hHHHHHHHcCCCCCcEEEEe-------------CCCccccc-cCCcccHHHHHHHHHcCC
Q psy5950 248 C----LGGDG-TLLYASLLFQQSVPPVMAFH-------------LGSLGFLT-PFEFENFEDQVTNVLEGH 299 (511)
Q Consensus 248 v----LGGDG-TlL~Aar~~~~~~~PILGIN-------------lG~LGFLt-~~~~~~~~~~L~~il~G~ 299 (511)
+ -|.|| .+++..+... ..+||+-+. .|-.|||. +++.+++...|.+++++.
T Consensus 73 ~D~~l~~~~g~~~~~~l~~~~-~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 142 (146)
T 4dad_A 73 IDGAALDTAELAAIEKLSRLH-PGLTCLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAAQC 142 (146)
T ss_dssp EECTTCCHHHHHHHHHHHHHC-TTCEEEEEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHHHTC
T ss_pred EeCCCCCccHHHHHHHHHHhC-CCCcEEEEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHHhhh
Confidence 6 23454 3444444432 356887654 25567886 888999999999988764
No 41
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=72.82 E-value=8.7 Score=39.95 Aligned_cols=92 Identities=9% Similarity=-0.003 Sum_probs=51.3
Q ss_pred CCcEEEEEecCCChhhHHHHHHHHHHHHhcCCeEE--EEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEE
Q psy5950 170 PPLTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLV--YVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFII 247 (511)
Q Consensus 170 ~p~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V--~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVI 247 (511)
..++++||+-..-.+ ....++.+.|.+. ++.+ ++-...-.. +.+..+.+-+..+. +.-....|+||
T Consensus 61 ~~~rvlIVtd~~v~~--~~~~~v~~~L~~~-g~~~~~~~~~~gE~~------kt~~~v~~~~~~l~---~~~~~R~d~II 128 (390)
T 3okf_A 61 AKQKVVIVTNHTVAP--LYAPAIISLLDHI-GCQHALLELPDGEQY------KTLETFNTVMSFLL---EHNYSRDVVVI 128 (390)
T ss_dssp TTCEEEEEEETTTHH--HHHHHHHHHHHHH-TCEEEEEEECSSGGG------CBHHHHHHHHHHHH---HTTCCTTCEEE
T ss_pred CCCEEEEEECCcHHH--HHHHHHHHHHHHc-CCeEEEEEECCCcCC------chHHHHHHHHHHHH---hcCCCcCcEEE
Confidence 357899999544332 2677888889765 3443 221211111 11111111111110 01122348999
Q ss_pred EEcCchhHHHHHHHcC---CCCCcEEEEeC
Q psy5950 248 CLGGDGTLLYASLLFQ---QSVPPVMAFHL 274 (511)
Q Consensus 248 vLGGDGTlL~Aar~~~---~~~~PILGINl 274 (511)
.+|| |+++-++..+. ..++|++-|-+
T Consensus 129 AvGG-Gsv~D~ak~~Aa~~~rgip~I~IPT 157 (390)
T 3okf_A 129 ALGG-GVIGDLVGFAAACYQRGVDFIQIPT 157 (390)
T ss_dssp EEES-HHHHHHHHHHHHHBTTCCEEEEEEC
T ss_pred EECC-cHHhhHHHHHHHHhcCCCCEEEeCC
Confidence 9999 99999998763 56788887765
No 42
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}
Probab=71.92 E-value=2.2 Score=41.16 Aligned_cols=35 Identities=17% Similarity=0.205 Sum_probs=27.4
Q ss_pred CCccEEEEEcCch-----------------------hHHHHHHHcCCCCCcEEEEeCC
Q psy5950 241 DKIDFIICLGGDG-----------------------TLLYASLLFQQSVPPVMAFHLG 275 (511)
Q Consensus 241 ~~~DlVIvLGGDG-----------------------TlL~Aar~~~~~~~PILGINlG 275 (511)
+.+|.+|.-||-+ ..+.+.+.+...++|||||-+|
T Consensus 60 ~~~DGlil~GG~~v~P~~yg~~~~~~~~~~~~~rd~~~~~lir~a~~~~~PiLGIC~G 117 (254)
T 3fij_A 60 SLVDGLLLTGGQDITPQLYLEEPSQEIGAYFPPRDSYEIALVRAALDAGKPIFAICRG 117 (254)
T ss_dssp HTCSEEEECCCSCCCGGGGTCCCCTTCCCCCHHHHHHHHHHHHHHHHTTCCEEEETHH
T ss_pred hhCCEEEECCCCCCChhhcCCccCcccCCcChhhhHHHHHHHHHHHHcCCCEEEECHH
Confidence 3689999999943 2666777766678999999987
No 43
>2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside, 2-deoxystreptamine, dehydroquinate synthase, lyase; HET: NAD EXO CAK; 2.15A {Bacillus circulans} PDB: 2d2x_A*
Probab=71.53 E-value=9.6 Score=38.81 Aligned_cols=92 Identities=8% Similarity=-0.055 Sum_probs=50.7
Q ss_pred CcEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEEc
Q psy5950 171 PLTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICLG 250 (511)
Q Consensus 171 p~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvLG 250 (511)
.++++||+-..-.+. ...++.+.|.+.-.+.+++-...-. ++.+..+.+-+..+. +.-....|+||.||
T Consensus 34 ~~k~liVtd~~v~~~--~~~~v~~~L~~~~~~~~~~~~~ge~------~k~~~~v~~~~~~~~---~~~~~r~d~iIalG 102 (368)
T 2gru_A 34 FDQYIMISDSGVPDS--IVHYAAEYFGKLAPVHILRFQGGEE------YKTLSTVTNLQERAI---ALGANRRTAIVAVG 102 (368)
T ss_dssp CSEEEEEEETTSCHH--HHHHHHHHHTTTSCEEEEEECCSGG------GCSHHHHHHHHHHHH---HTTCCTTEEEEEEE
T ss_pred CCEEEEEECCcHHHH--HHHHHHHHHHhccceeEEEeCCCCC------CCCHHHHHHHHHHHH---hcCCCCCcEEEEEC
Confidence 578999995443322 5778888886431222222111111 111111111110000 11123579999999
Q ss_pred CchhHHHHHHHcC---CCCCcEEEEeC
Q psy5950 251 GDGTLLYASLLFQ---QSVPPVMAFHL 274 (511)
Q Consensus 251 GDGTlL~Aar~~~---~~~~PILGINl 274 (511)
| |+++-++..+. ..++|++-|-+
T Consensus 103 G-Gsv~D~ak~~Aa~~~rgip~i~IPT 128 (368)
T 2gru_A 103 G-GLTGNVAGVAAGMMFRGIALIHVPT 128 (368)
T ss_dssp S-HHHHHHHHHHHHHBTTCCEEEEEEC
T ss_pred C-hHHHHHHHHHHHHhcCCCCEEEECC
Confidence 9 99999988765 35788888776
No 44
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=71.02 E-value=40 Score=27.97 Aligned_cols=60 Identities=17% Similarity=0.161 Sum_probs=41.6
Q ss_pred CccEEEE----EcCch-hHHHHHHHcCCCCCcEEEEeC-------------CCccccc-cCCcccHHHHHHHHHcCCcEE
Q psy5950 242 KIDFIIC----LGGDG-TLLYASLLFQQSVPPVMAFHL-------------GSLGFLT-PFEFENFEDQVTNVLEGHAAL 302 (511)
Q Consensus 242 ~~DlVIv----LGGDG-TlL~Aar~~~~~~~PILGINl-------------G~LGFLt-~~~~~~~~~~L~~il~G~~~i 302 (511)
.+|+||+ -+.|| .+++..+.. ...+||+-+.. |-.+||. +++.+++...|.++++|.-.+
T Consensus 66 ~~dlii~D~~l~~~~g~~~~~~l~~~-~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~~~ 144 (150)
T 4e7p_A 66 SVDIAILDVEMPVKTGLEVLEWIRSE-KLETKVVVVTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLHTVLEGRKEY 144 (150)
T ss_dssp CCSEEEECSSCSSSCHHHHHHHHHHT-TCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHTTCCEE
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHh-CCCCeEEEEeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHcCCEEc
Confidence 4687776 24555 355555543 34678877643 6678886 899999999999999986443
No 45
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Probab=70.96 E-value=2.1 Score=48.32 Aligned_cols=55 Identities=16% Similarity=0.201 Sum_probs=41.4
Q ss_pred CCccEEEEEcCchhHHHHHHHcC------CCCCcEEEEeC-------C---CccccccCCcccHHHHHHHHHc
Q psy5950 241 DKIDFIICLGGDGTLLYASLLFQ------QSVPPVMAFHL-------G---SLGFLTPFEFENFEDQVTNVLE 297 (511)
Q Consensus 241 ~~~DlVIvLGGDGTlL~Aar~~~------~~~~PILGINl-------G---~LGFLt~~~~~~~~~~L~~il~ 297 (511)
.++|.+|++|||||+-.|..+.. ..++||+||-- | ++||-|.++ .+-++++++..
T Consensus 488 ~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vvgiPkTIDNDl~gTD~TiGfdTA~~--~~~~aid~i~~ 558 (762)
T 3o8l_A 488 FNIQGLVIIGGFEAYTGGLELMEGRKQFDELCIPFVVIPATVSNNVPGSDFSVGADTALN--TICTTCDRIKQ 558 (762)
T ss_dssp TTCCCEEEEESHHHHHHHHHHHHHHHHCSTTCSCEEEEEBCTTCCCTTCSCCBTHHHHHH--HHHHHHHHHTT
T ss_pred cCCCEEEEeCCchHHHHHHHHHHHHHhccccCCCEEeeccccCCCCCCCcCCCChHHHHH--HHHHHHHHHHH
Confidence 36899999999999988876642 35899999853 2 777777654 56677777754
No 46
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=70.68 E-value=26 Score=28.63 Aligned_cols=59 Identities=19% Similarity=0.229 Sum_probs=40.7
Q ss_pred CCccEEEEE----c--Cch-hHHHHHHHcCCCCCcEEEEeC-------------CCccccc-cCCcccHHHHHHHHHcCC
Q psy5950 241 DKIDFIICL----G--GDG-TLLYASLLFQQSVPPVMAFHL-------------GSLGFLT-PFEFENFEDQVTNVLEGH 299 (511)
Q Consensus 241 ~~~DlVIvL----G--GDG-TlL~Aar~~~~~~~PILGINl-------------G~LGFLt-~~~~~~~~~~L~~il~G~ 299 (511)
..+|+||+= | .|| .+++..+... ..+||+-+.. |-.+||. +++.+++...|+++..+.
T Consensus 49 ~~~dlvi~D~~l~~~~~~g~~~~~~l~~~~-~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~ 127 (136)
T 3kto_A 49 DDAIGMIIEAHLEDKKDSGIELLETLVKRG-FHLPTIVMASSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQIINGA 127 (136)
T ss_dssp TTEEEEEEETTGGGBTTHHHHHHHHHHHTT-CCCCEEEEESSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCcCCCCCccHHHHHHHHHhCC-CCCCEEEEEcCCCHHHHHHHHHcChHHheeCCCCHHHHHHHHHHHHhcc
Confidence 357888872 3 455 3555555432 4678887643 6778886 899999999999988764
Q ss_pred c
Q psy5950 300 A 300 (511)
Q Consensus 300 ~ 300 (511)
.
T Consensus 128 ~ 128 (136)
T 3kto_A 128 K 128 (136)
T ss_dssp C
T ss_pred C
Confidence 3
No 47
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=70.20 E-value=3.4 Score=42.68 Aligned_cols=85 Identities=11% Similarity=0.024 Sum_probs=45.5
Q ss_pred cEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEEcC
Q psy5950 172 LTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICLGG 251 (511)
Q Consensus 172 ~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvLGG 251 (511)
++++||+-+.-.+ ....++.+.|.+ ++.+... .+..++ ....+.+-...+. ..++|+||.+||
T Consensus 53 ~r~liVtd~~~~~--~~~~~v~~~L~~--g~~~~~~-~~~~~p------~~~~v~~~~~~~~------~~~~d~IIavGG 115 (387)
T 3uhj_A 53 KRALVLIDRVLFD--ALSERIGKSCGD--SLDIRFE-RFGGEC------CTSEIERVRKVAI------EHGSDILVGVGG 115 (387)
T ss_dssp SEEEEEECTTTHH--HHHHHC--------CCEEEEE-ECCSSC------SHHHHHHHHHHHH------HHTCSEEEEESS
T ss_pred CEEEEEECchHHH--HHHHHHHHHHHc--CCCeEEE-EcCCCC------CHHHHHHHHHHHh------hcCCCEEEEeCC
Confidence 7899999543322 256778888875 5554211 111111 1111111111110 135799999999
Q ss_pred chhHHHHHHHcCC-CCCcEEEEeC
Q psy5950 252 DGTLLYASLLFQQ-SVPPVMAFHL 274 (511)
Q Consensus 252 DGTlL~Aar~~~~-~~~PILGINl 274 (511)
|+.+-+++.+.. ..+|++.|..
T Consensus 116 -Gs~~D~AK~iA~~~~~p~i~IPT 138 (387)
T 3uhj_A 116 -GKTADTAKIVAIDTGARIVIAPT 138 (387)
T ss_dssp -HHHHHHHHHHHHHTTCEEEECCS
T ss_pred -cHHHHHHHHHHHhcCCCEEEecC
Confidence 999999997653 5789998876
No 48
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=70.09 E-value=29 Score=27.88 Aligned_cols=59 Identities=14% Similarity=0.259 Sum_probs=36.5
Q ss_pred CccEEEEE----cCch-hHHHHHHHcCC-CCCcEEEEeC------------CCccccc-cCCcccHHHHHHHHHcCCc
Q psy5950 242 KIDFIICL----GGDG-TLLYASLLFQQ-SVPPVMAFHL------------GSLGFLT-PFEFENFEDQVTNVLEGHA 300 (511)
Q Consensus 242 ~~DlVIvL----GGDG-TlL~Aar~~~~-~~~PILGINl------------G~LGFLt-~~~~~~~~~~L~~il~G~~ 300 (511)
.+|+||+= |+|| .+++..+.... ..+||+-+.. |-.+||. +++.+++.+.|.+...|.+
T Consensus 50 ~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 127 (132)
T 3lte_A 50 EPAIMTLDLSMPKLDGLDVIRSLRQNKVANQPKILVVSGLDKAKLQQAVTEGADDYLEKPFDNDALLDRIHDLVNEGH 127 (132)
T ss_dssp CCSEEEEESCBTTBCHHHHHHHHHTTTCSSCCEEEEECCSCSHHHHHHHHHTCCEEECSSCCHHHHHHHHHHHHC---
T ss_pred CCCEEEEecCCCCCCHHHHHHHHHhcCccCCCeEEEEeCCChHHHHHHHHhChHHHhhCCCCHHHHHHHHHHHcCCCC
Confidence 46777762 4455 35555554432 3466665432 5667886 8999999999999888754
No 49
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=69.73 E-value=25 Score=28.95 Aligned_cols=58 Identities=29% Similarity=0.454 Sum_probs=40.6
Q ss_pred CccEEEE----EcCch-hHHHHHHHcC-CCCCcEEEEeC-------------CCccccc-cCCcccHHHHHHHHHcCC
Q psy5950 242 KIDFIIC----LGGDG-TLLYASLLFQ-QSVPPVMAFHL-------------GSLGFLT-PFEFENFEDQVTNVLEGH 299 (511)
Q Consensus 242 ~~DlVIv----LGGDG-TlL~Aar~~~-~~~~PILGINl-------------G~LGFLt-~~~~~~~~~~L~~il~G~ 299 (511)
.+|+||+ =|.|| .+++..+... ...+||+-+.. |-.+||. +++.+++...|.+++.+.
T Consensus 48 ~~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~l~~~ 125 (136)
T 3t6k_A 48 LPDALICDVLLPGIDGYTLCKRVRQHPLTKTLPILMLTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNILART 125 (136)
T ss_dssp CCSEEEEESCCSSSCHHHHHHHHHHSGGGTTCCEEEEECTTCHHHHHHHHHHTCSEEEETTCCHHHHHHHHHHHHHC-
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHcCCCcCCccEEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHhcc
Confidence 4688877 26677 4566665532 24678886643 6678887 899999999999988764
No 50
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=69.20 E-value=17 Score=33.02 Aligned_cols=59 Identities=8% Similarity=0.107 Sum_probs=42.5
Q ss_pred CccEEEE----EcCch-hHHHHHHHcCCCCCcEEEEe-------------CCCccccc-cCCcccHHHHHHHHHcCCc
Q psy5950 242 KIDFIIC----LGGDG-TLLYASLLFQQSVPPVMAFH-------------LGSLGFLT-PFEFENFEDQVTNVLEGHA 300 (511)
Q Consensus 242 ~~DlVIv----LGGDG-TlL~Aar~~~~~~~PILGIN-------------lG~LGFLt-~~~~~~~~~~L~~il~G~~ 300 (511)
.+|+||+ -|+|| .+++..+......+||+-+. .|--|||. +++++++...|.+++.|..
T Consensus 54 ~~dlvllD~~mp~~~G~~~~~~lr~~~~~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 131 (225)
T 3klo_A 54 SIQMLVIDYSRISDDVLTDYSSFKHISCPDAKEVIINCPQDIEHKLLFKWNNLAGVFYIDDDMDTLIKGMSKILQDEM 131 (225)
T ss_dssp GCCEEEEEGGGCCHHHHHHHHHHHHHHCTTCEEEEEEECTTCCHHHHTTSTTEEEEEETTCCHHHHHHHHHHHHTTCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhhCCCCcEEEEECCcchhHHHHHHHhCCCEEEecCCCHHHHHHHHHHHHCCCE
Confidence 4788887 36677 45565554123467888663 36678887 8999999999999999864
No 51
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=69.03 E-value=2.4 Score=48.87 Aligned_cols=54 Identities=22% Similarity=0.223 Sum_probs=39.2
Q ss_pred CCccEEEEEcCchhHHHHHHHcCC------CCCcEEEEeC-------C---CccccccCCcccHHHHHHHHH
Q psy5950 241 DKIDFIICLGGDGTLLYASLLFQQ------SVPPVMAFHL-------G---SLGFLTPFEFENFEDQVTNVL 296 (511)
Q Consensus 241 ~~~DlVIvLGGDGTlL~Aar~~~~------~~~PILGINl-------G---~LGFLt~~~~~~~~~~L~~il 296 (511)
.++|.+|++|||||+-.|..+... .++||+||-- | ++||-|.++ .+-++++++.
T Consensus 661 ~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vVGIPkTIDNDl~gTD~TiGfdTA~~--~i~eaid~i~ 730 (941)
T 3opy_B 661 YGFDGLILVGGFEAFISLHQLERARINYPSLRIPLVLIPATISNNVPGTEYSLGSDTCLN--SFMEYCDVIK 730 (941)
T ss_dssp TTCSEEEEEESHHHHHHHHHHHHGGGTCGGGCSCEEEEEBCSSCCCTTCSCCBTHHHHHH--HHHHHHHHHH
T ss_pred cCCCEEEEeCCchHHHHHHHHHHHHHhcCccCCcEEeeeccccCCCCCCCCCCChHHHHH--HHHHHHHHHH
Confidence 368999999999998777666431 3799999853 2 778877654 4556666665
No 52
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=68.11 E-value=43 Score=27.82 Aligned_cols=60 Identities=17% Similarity=0.354 Sum_probs=41.5
Q ss_pred CccEEEE----EcCch-hHHHHHHHcCCCCCcEEEEe-------------CCCccccc-cCCcccHHHHHHHHHcCCcEE
Q psy5950 242 KIDFIIC----LGGDG-TLLYASLLFQQSVPPVMAFH-------------LGSLGFLT-PFEFENFEDQVTNVLEGHAAL 302 (511)
Q Consensus 242 ~~DlVIv----LGGDG-TlL~Aar~~~~~~~PILGIN-------------lG~LGFLt-~~~~~~~~~~L~~il~G~~~i 302 (511)
.+|+||+ -+.|| .++...+... ..+||+-+. .|-.|||. +++.+++...|.+++.+...+
T Consensus 51 ~~dlii~D~~l~~~~g~~~~~~l~~~~-~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~~~~ 129 (153)
T 3cz5_A 51 TPDIVVMDLTLPGPGGIEATRHIRQWD-GAARILIFTMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAILAGRRAM 129 (153)
T ss_dssp CCSEEEECSCCSSSCHHHHHHHHHHHC-TTCCEEEEESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTTTCCEE
T ss_pred CCCEEEEecCCCCCCHHHHHHHHHHhC-CCCeEEEEECCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHhCCccC
Confidence 4688776 24455 3555555542 357887764 36678886 899999999999999886544
No 53
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=68.07 E-value=7.3 Score=35.65 Aligned_cols=35 Identities=17% Similarity=0.348 Sum_probs=23.8
Q ss_pred CccEEEEEc-Cc-hh---------HHHHHHHcCCCCCcEEEEeCCC
Q psy5950 242 KIDFIICLG-GD-GT---------LLYASLLFQQSVPPVMAFHLGS 276 (511)
Q Consensus 242 ~~DlVIvLG-GD-GT---------lL~Aar~~~~~~~PILGINlG~ 276 (511)
++|.+|.-| || .+ ++...+.+...++|||||-.|.
T Consensus 40 ~~d~lil~G~g~~~~~~~~l~~~~~~~~i~~~~~~~~PilGIC~G~ 85 (200)
T 1ka9_H 40 EADLLVLPGQGHFGQVMRAFQESGFVERVRRHLERGLPFLGICVGM 85 (200)
T ss_dssp SCSEEEECCCSCHHHHHHTTSSSCTHHHHHHHHHTTCCEEECTHHH
T ss_pred cCCEEEECCCCcHHHHHHHHHhcCHHHHHHHHHHcCCeEEEEcHHH
Confidence 579888877 55 22 3445555445679999998873
No 54
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=68.00 E-value=2.2 Score=42.24 Aligned_cols=95 Identities=13% Similarity=0.054 Sum_probs=51.1
Q ss_pred CCcEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCC-CCccccccccccccCCCCCCCCCccEEEE
Q psy5950 170 PPLTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATN-PSFTVVKDKLMTFRDGKDDLTDKIDFIIC 248 (511)
Q Consensus 170 ~p~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~-~~f~~~~~~l~~~~~~~~~~~~~~DlVIv 248 (511)
.+++|+|..=-.++ .....++++.|.+...+.|+.-........+... .....+ ++..|..+..+....+|++|+
T Consensus 156 ~~~~ILv~~GG~d~--~~l~~~vl~~L~~~~~i~vv~G~~~~~~~~l~~~~~~~~~v--~v~~~~~~m~~~m~~aDlvI~ 231 (282)
T 3hbm_A 156 KKYDFFICMGGTDI--KNLSLQIASELPKTKIISIATSSSNPNLKKLQKFAKLHNNI--RLFIDHENIAKLMNESNKLII 231 (282)
T ss_dssp CCEEEEEECCSCCT--TCHHHHHHHHSCTTSCEEEEECTTCTTHHHHHHHHHTCSSE--EEEESCSCHHHHHHTEEEEEE
T ss_pred cCCeEEEEECCCch--hhHHHHHHHHhhcCCCEEEEECCCchHHHHHHHHHhhCCCE--EEEeCHHHHHHHHHHCCEEEE
Confidence 46688887643333 2345567777765445555554332110000000 000000 122332233344568999999
Q ss_pred EcCchhHHHHHHHcCCCCCcEEEEe
Q psy5950 249 LGGDGTLLYASLLFQQSVPPVMAFH 273 (511)
Q Consensus 249 LGGDGTlL~Aar~~~~~~~PILGIN 273 (511)
-|| +|+..++.. ++|.+-|-
T Consensus 232 ~gG-~T~~E~~~~----g~P~i~ip 251 (282)
T 3hbm_A 232 SAS-SLVNEALLL----KANFKAIC 251 (282)
T ss_dssp ESS-HHHHHHHHT----TCCEEEEC
T ss_pred CCc-HHHHHHHHc----CCCEEEEe
Confidence 999 899887755 78998875
No 55
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=67.95 E-value=2.4 Score=48.04 Aligned_cols=54 Identities=24% Similarity=0.246 Sum_probs=39.5
Q ss_pred CCccEEEEEcCchhHHHHHHHcCC------CCCcEEEEeC-------C---CccccccCCcccHHHHHHHHH
Q psy5950 241 DKIDFIICLGGDGTLLYASLLFQQ------SVPPVMAFHL-------G---SLGFLTPFEFENFEDQVTNVL 296 (511)
Q Consensus 241 ~~~DlVIvLGGDGTlL~Aar~~~~------~~~PILGINl-------G---~LGFLt~~~~~~~~~~L~~il 296 (511)
-++|.+|++|||||+-.|..+... .++||+||-- | ++||=|.++ .+-++++++.
T Consensus 482 ~~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vIgiPkTIDNDl~gTD~t~GfdTA~~--~~~eaid~i~ 551 (787)
T 3o8o_A 482 NKLDGLIILGGFEGFRSLKQLRDGRTQHPIFNIPMCLIPATVSNNVPGTEYSLGVDTCLN--ALVNYTDDIK 551 (787)
T ss_dssp TTCSEEEEEESHHHHHHHHHHHHHTTTCGGGGSCEEEEEBCTTCCCTTCSCCBTHHHHHH--HHHHHHHHHH
T ss_pred hCCCEEEEeCCchHHHHHHHHHHHHHhcCccCCceeecccccccCCCCCcCCCCchHHHH--HHHHHHHHHH
Confidence 368999999999999888776531 3699999853 2 778877655 3556666664
No 56
>1ujn_A Dehydroquinate synthase; riken structu genomics/proteomics initiative, RSGI, structural genomics,; 1.80A {Thermus thermophilus} SCOP: e.22.1.1
Probab=67.88 E-value=8.6 Score=38.89 Aligned_cols=88 Identities=16% Similarity=0.034 Sum_probs=49.4
Q ss_pred CcEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEEc
Q psy5950 171 PLTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICLG 250 (511)
Q Consensus 171 p~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvLG 250 (511)
.++++||+- +.+.+...++.+.|. .++.+.++. .-. ++.+..+.+-...+. +.-..+.|+||.+|
T Consensus 28 ~~kvliVtd---~~v~~~~~~v~~~L~--~~~~~~~~~-ge~------~~~~~~v~~~~~~~~---~~~~~r~d~IIavG 92 (348)
T 1ujn_A 28 AGPAALLFD---RRVEGFAQEVAKALG--VRHLLGLPG-GEA------AKSLEVYGKVLSWLA---EKGLPRNATLLVVG 92 (348)
T ss_dssp SSCEEEEEE---GGGHHHHHHHHHHHT--CCCEEEECC-SGG------GSSHHHHHHHHHHHH---HHTCCTTCEEEEEE
T ss_pred CCEEEEEEC---CcHHHHHHHHHHHhc--cCeEEEECC-CCC------CCCHHHHHHHHHHHH---HcCCCCCCEEEEEC
Confidence 467999984 334446677777775 233422321 111 111111111110000 11123469999999
Q ss_pred CchhHHHHHHHcC---CCCCcEEEEeC
Q psy5950 251 GDGTLLYASLLFQ---QSVPPVMAFHL 274 (511)
Q Consensus 251 GDGTlL~Aar~~~---~~~~PILGINl 274 (511)
| |.++-++..+. ...+|++-|-+
T Consensus 93 G-Gsv~D~ak~~A~~~~rgip~i~IPT 118 (348)
T 1ujn_A 93 G-GTLTDLGGFVAATYLRGVAYLAFPT 118 (348)
T ss_dssp S-HHHHHHHHHHHHHBTTCCEEEEEEC
T ss_pred C-cHHHHHHHHHHHHhccCCCEEEecC
Confidence 9 99999998765 45789988876
No 57
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=67.45 E-value=2.3 Score=48.15 Aligned_cols=53 Identities=23% Similarity=0.206 Sum_probs=39.2
Q ss_pred CccEEEEEcCchhHHHHHHHcCC------CCCcEEEEeC-------C---CccccccCCcccHHHHHHHHH
Q psy5950 242 KIDFIICLGGDGTLLYASLLFQQ------SVPPVMAFHL-------G---SLGFLTPFEFENFEDQVTNVL 296 (511)
Q Consensus 242 ~~DlVIvLGGDGTlL~Aar~~~~------~~~PILGINl-------G---~LGFLt~~~~~~~~~~L~~il 296 (511)
++|.+|++|||||+-.|..+... .++|++||-- | ++||-|.++ .+-++++++.
T Consensus 484 ~Id~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vvgiPkTIDNDl~gTD~T~GfdTA~~--~~~~aid~i~ 552 (766)
T 3o8o_B 484 EFDGLIIVGGFEAFESLHQLERARESYPAFRIPMVLIPATLSNNVPGTEYSLGSDTALN--ALMEYCDVVK 552 (766)
T ss_dssp TCSEEEEEESHHHHHHHHHHHTTTTTCGGGCSCCCEEEBCTTCCCSSCSCCBTHHHHHH--HHHHHHHHHH
T ss_pred CCCEEEEeCCchHHHHHHHHHHHHHhcCccCCcEEeeccccccCCCCCCCCCChhHHHH--HHHHHHHHHH
Confidence 68999999999999887777541 3689999853 2 778877655 4555666664
No 58
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=67.44 E-value=2.7 Score=48.68 Aligned_cols=53 Identities=25% Similarity=0.192 Sum_probs=37.4
Q ss_pred CccEEEEEcCchhHHHHHHHcCC------CCCcEEEEeC-------C---CccccccCCcccHHHHHHHHH
Q psy5950 242 KIDFIICLGGDGTLLYASLLFQQ------SVPPVMAFHL-------G---SLGFLTPFEFENFEDQVTNVL 296 (511)
Q Consensus 242 ~~DlVIvLGGDGTlL~Aar~~~~------~~~PILGINl-------G---~LGFLt~~~~~~~~~~L~~il 296 (511)
++|.+|++|||||+-.|..+... .++||+||-- | ++||=|.++ .+.++++++.
T Consensus 688 ~Id~LvvIGGdgS~~~a~~L~~~~~~y~~~~I~vVGIPkTIDNDl~gTD~TiGFdTAvn--~~~eaId~i~ 756 (989)
T 3opy_A 688 KFDGLIIIGGFEAFTALYELDAARAQYPIFNIPMCCLPATVSNNVPGTEYSLGSDTCLN--TLSGYCDAVK 756 (989)
T ss_dssp TCSEEEEEESHHHHHHHHHHHHHTTTCGGGCSCEEEEEBCSSCCCTTCSCCBTHHHHHH--HHHHHHHHHH
T ss_pred CCCEEEEeCCchHHHHHHHHHHHHhhCCCcCCcEEeccccccCCCCCCcCCCChHHHHH--HHHHHHHHHH
Confidence 68999999999999766655431 3799999853 2 677777544 4555666654
No 59
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Probab=67.03 E-value=3.3 Score=46.84 Aligned_cols=55 Identities=20% Similarity=0.303 Sum_probs=40.7
Q ss_pred CccEEEEEcCchhHHHHHHHcC----------------------CCCCcEEEEeC-------C---CccccccCCcccHH
Q psy5950 242 KIDFIICLGGDGTLLYASLLFQ----------------------QSVPPVMAFHL-------G---SLGFLTPFEFENFE 289 (511)
Q Consensus 242 ~~DlVIvLGGDGTlL~Aar~~~----------------------~~~~PILGINl-------G---~LGFLt~~~~~~~~ 289 (511)
++|.+|++|||||+-.|..+.. ...+||+||-- | ++||-|.++ .+.
T Consensus 109 ~Id~LvvIGGdgS~~gA~~l~~e~~~ll~eL~~~g~i~~~~~~~~~~i~vVGIPkTIDNDl~gTD~TiGfdTA~~--~i~ 186 (762)
T 3o8l_A 109 GITNLCVIGGDGSLTGADTFRSEWSDLLSDLQKAGKITAEEATRSSYLNIVGLVGSIDNDFCGTDMTIGTDSALH--RIT 186 (762)
T ss_dssp CCCEEEEEECHHHHHHHHHHHHTTHHHHHHTTTTTSCTTTGGGSTTCCEEEEEEBCTTCCCSSCSCCBTHHHHHH--HHH
T ss_pred CCCEEEEeCCCchHHHHHHHHHHhHHHHHHHHhccchhHHHHhcCCCCCeEEeecCcccCCCCCcCCcCchhHHH--HHH
Confidence 6899999999999988875421 24789999842 2 778887754 567
Q ss_pred HHHHHHHcC
Q psy5950 290 DQVTNVLEG 298 (511)
Q Consensus 290 ~~L~~il~G 298 (511)
++|+++..-
T Consensus 187 eaid~i~~t 195 (762)
T 3o8l_A 187 EIVDAITTT 195 (762)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHh
Confidence 788887654
No 60
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=66.06 E-value=49 Score=26.38 Aligned_cols=58 Identities=17% Similarity=0.267 Sum_probs=40.4
Q ss_pred CccEEEE---E-cCchh-HHHHHHHcCCCCCcEEEEe-------------CCCccccc-cCCcccHHHHHHHHHcCCc
Q psy5950 242 KIDFIIC---L-GGDGT-LLYASLLFQQSVPPVMAFH-------------LGSLGFLT-PFEFENFEDQVTNVLEGHA 300 (511)
Q Consensus 242 ~~DlVIv---L-GGDGT-lL~Aar~~~~~~~PILGIN-------------lG~LGFLt-~~~~~~~~~~L~~il~G~~ 300 (511)
.+|+||+ + |.||. +++..+... ..+||+-+. .|-.|||. +++.+++...|++++.+.-
T Consensus 47 ~~dlvi~D~~l~~~~g~~~~~~l~~~~-~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~~ 123 (126)
T 1dbw_A 47 RNGVLVTDLRMPDMSGVELLRNLGDLK-INIPSIVITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASEHLV 123 (126)
T ss_dssp CSEEEEEECCSTTSCHHHHHHHHHHTT-CCCCEEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTTCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcC-CCCCEEEEECCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHhhh
Confidence 4687776 2 56774 555555532 467888763 36678886 8999999999999887643
No 61
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=64.93 E-value=28 Score=28.23 Aligned_cols=58 Identities=17% Similarity=0.272 Sum_probs=39.8
Q ss_pred CccEEEEE---------cCch-hHHHHHHHcCCCCCcEEEEe-------------CCCccccc-cCCcccHHHHHHHHHc
Q psy5950 242 KIDFIICL---------GGDG-TLLYASLLFQQSVPPVMAFH-------------LGSLGFLT-PFEFENFEDQVTNVLE 297 (511)
Q Consensus 242 ~~DlVIvL---------GGDG-TlL~Aar~~~~~~~PILGIN-------------lG~LGFLt-~~~~~~~~~~L~~il~ 297 (511)
.+|+||+= +.|| .+++..+.. ...+||+-+. .|-.+||. +++.+++...|.+++.
T Consensus 47 ~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~-~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~ 125 (140)
T 2qr3_A 47 NPEVVLLDMNFTSGINNGNEGLFWLHEIKRQ-YRDLPVVLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAAS 125 (140)
T ss_dssp CEEEEEEETTTTC-----CCHHHHHHHHHHH-CTTCCEEEEEEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCcCCCCCCCccHHHHHHHHHhh-CcCCCEEEEECCCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHHH
Confidence 47888772 4455 345555543 3467888763 37778886 8999999999999998
Q ss_pred CCc
Q psy5950 298 GHA 300 (511)
Q Consensus 298 G~~ 300 (511)
+..
T Consensus 126 ~~~ 128 (140)
T 2qr3_A 126 QAK 128 (140)
T ss_dssp CC-
T ss_pred hcc
Confidence 753
No 62
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=64.48 E-value=23 Score=28.85 Aligned_cols=56 Identities=18% Similarity=0.232 Sum_probs=36.1
Q ss_pred CccEEEEE----cCch-hHHHHHHHc-CCCCCcEEEEeC-------------CCccccc-cCCcccHHHHHHHHHc
Q psy5950 242 KIDFIICL----GGDG-TLLYASLLF-QQSVPPVMAFHL-------------GSLGFLT-PFEFENFEDQVTNVLE 297 (511)
Q Consensus 242 ~~DlVIvL----GGDG-TlL~Aar~~-~~~~~PILGINl-------------G~LGFLt-~~~~~~~~~~L~~il~ 297 (511)
.+|+||+= +.|| .+++..+.. ....+||+-+.. |-.+||. +++.+++...|.+++.
T Consensus 51 ~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 126 (142)
T 3cg4_A 51 FSGVVLLDIMMPGMDGWDTIRAILDNSLEQGIAIVMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMG 126 (142)
T ss_dssp CCEEEEEESCCSSSCHHHHHHHHHHTTCCTTEEEEEEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCCEEEEECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHHH
Confidence 46887762 4465 355555552 234678887743 3446775 8888888888888764
No 63
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=64.12 E-value=23 Score=28.48 Aligned_cols=58 Identities=21% Similarity=0.109 Sum_probs=39.5
Q ss_pred CccEEEE----EcCch-hHHHHHHHcC-CCCCcEEEEeC------------CCccccc-cCCcccHHHHHHHHHcCC
Q psy5950 242 KIDFIIC----LGGDG-TLLYASLLFQ-QSVPPVMAFHL------------GSLGFLT-PFEFENFEDQVTNVLEGH 299 (511)
Q Consensus 242 ~~DlVIv----LGGDG-TlL~Aar~~~-~~~~PILGINl------------G~LGFLt-~~~~~~~~~~L~~il~G~ 299 (511)
.+|+||+ -|.|| .+++..+... ...+||+-+.. |--+||. +++.+++...|.+++++.
T Consensus 47 ~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~ 123 (133)
T 3nhm_A 47 PPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSGYAPRTEGPADQPVPDAYLVKPVKPPVLIAQLHALLARA 123 (133)
T ss_dssp CCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEESCCC-----TTSCCCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeCCCcHhHHHHhhcCCceEEeccCCHHHHHHHHHHHHhhh
Confidence 4687777 25566 3555555532 23678876542 5556776 899999999999998764
No 64
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=63.96 E-value=4.4 Score=45.96 Aligned_cols=54 Identities=24% Similarity=0.378 Sum_probs=37.2
Q ss_pred CCccEEEEEcCchhHHHHHHHcC----------------------CCCCcEEEEeC-------C---CccccccCCcccH
Q psy5950 241 DKIDFIICLGGDGTLLYASLLFQ----------------------QSVPPVMAFHL-------G---SLGFLTPFEFENF 288 (511)
Q Consensus 241 ~~~DlVIvLGGDGTlL~Aar~~~----------------------~~~~PILGINl-------G---~LGFLt~~~~~~~ 288 (511)
.++|.+|++|||||+-.|..+.. ...+||+||-- | ++||-|.++ .+
T Consensus 98 ~~Id~LvvIGGdgS~~~A~~l~~e~~~l~~eL~~~~~is~e~~~~~~~i~vVGIPkTIDNDl~gTD~TiGfdTAl~--~i 175 (787)
T 3o8o_A 98 QGIDALVVCGGDGSLTGADLFRHEWPSLVDELVAEGRFTKEEVAPYKNLSIVGLVGSIDNDMSGTDSTIGAYSALE--RI 175 (787)
T ss_dssp HTEEEEEEEECHHHHHHHHHHHTTHHHHHHHHHSSSSCCTTTTTTTCSCEEEEEEEESSCCCTTSSCCEEHHHHHH--HH
T ss_pred cCCCEEEEeCCCchHHHHHHHHHhhHHHHHHHHhcccccHHHHhcCCCCcEEEEeecCcCCCCCCCCCCCcHHHHH--HH
Confidence 36799999999999988764311 13789999842 3 788887755 34
Q ss_pred HHHHHHHH
Q psy5950 289 EDQVTNVL 296 (511)
Q Consensus 289 ~~~L~~il 296 (511)
-++++++.
T Consensus 176 ~eaid~i~ 183 (787)
T 3o8o_A 176 CEMVDYID 183 (787)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 45555553
No 65
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=63.32 E-value=29 Score=28.54 Aligned_cols=55 Identities=24% Similarity=0.216 Sum_probs=38.7
Q ss_pred CCccEEEE---E--cCch-hHHHHHHHcCCCCCcEEEEeC-------------CCccccc-cCCcccHHHHHHHHHc
Q psy5950 241 DKIDFIIC---L--GGDG-TLLYASLLFQQSVPPVMAFHL-------------GSLGFLT-PFEFENFEDQVTNVLE 297 (511)
Q Consensus 241 ~~~DlVIv---L--GGDG-TlL~Aar~~~~~~~PILGINl-------------G~LGFLt-~~~~~~~~~~L~~il~ 297 (511)
..+|+||+ + |.|| .+++..+.. ..+||+-+.. |-.+||. +++.+++...|.++++
T Consensus 49 ~~~dlvi~D~~l~~~~~g~~~~~~l~~~--~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~ 123 (140)
T 3h5i_A 49 WYPDLILMDIELGEGMDGVQTALAIQQI--SELPVVFLTAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMALR 123 (140)
T ss_dssp CCCSEEEEESSCSSSCCHHHHHHHHHHH--CCCCEEEEESSSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeccCCCCCCHHHHHHHHHhC--CCCCEEEEECCCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 35788887 3 4677 466666654 4678887643 5567776 8889999998888775
No 66
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=63.28 E-value=28 Score=33.85 Aligned_cols=57 Identities=16% Similarity=0.156 Sum_probs=42.4
Q ss_pred CCCCCccEEEEEcCchhHHHHHHHcCCCCCcEEEEeC--------------CCcccccc---CCcccHHHHHHHHHcC
Q psy5950 238 DLTDKIDFIICLGGDGTLLYASLLFQQSVPPVMAFHL--------------GSLGFLTP---FEFENFEDQVTNVLEG 298 (511)
Q Consensus 238 ~~~~~~DlVIvLGGDGTlL~Aar~~~~~~~PILGINl--------------G~LGFLt~---~~~~~~~~~L~~il~G 298 (511)
++...+|++|+-||=||++.++.. ++|++.+-. +..|.+.+ ++.+++.++|.++++.
T Consensus 293 ~ll~~ad~~v~~~G~~t~~Ea~~~----G~P~v~~p~~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~~~~ll~~ 366 (402)
T 3ia7_A 293 SVLAHARACLTHGTTGAVLEAFAA----GVPLVLVPHFATEAAPSAERVIELGLGSVLRPDQLEPASIREAVERLAAD 366 (402)
T ss_dssp HHHTTEEEEEECCCHHHHHHHHHT----TCCEEECGGGCGGGHHHHHHHHHTTSEEECCGGGCSHHHHHHHHHHHHHC
T ss_pred HHHhhCCEEEECCCHHHHHHHHHh----CCCEEEeCCCcccHHHHHHHHHHcCCEEEccCCCCCHHHHHHHHHHHHcC
Confidence 456679999999999999988755 789996644 23455543 3667788888888764
No 67
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=63.12 E-value=8.4 Score=38.94 Aligned_cols=85 Identities=14% Similarity=0.041 Sum_probs=49.3
Q ss_pred cEEEEEecCCChhhH-HHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEEc
Q psy5950 172 LTVLVIKKVRDVSVL-QPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICLG 250 (511)
Q Consensus 172 ~~VlII~K~~~~~~~-~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvLG 250 (511)
++++||+ |+.+. ....++.+.|.+ .++.+.+.. ....+. ...+.+-...+ ...++|+||.+|
T Consensus 32 ~~~livt---d~~~~~~~~~~v~~~L~~-~g~~~~~~~-~~ge~~------~~~v~~~~~~~------~~~~~d~IIavG 94 (370)
T 1jq5_A 32 NKTVVIA---DEIVWKIAGHTIVNELKK-GNIAAEEVV-FSGEAS------RNEVERIANIA------RKAEAAIVIGVG 94 (370)
T ss_dssp SEEEEEE---CHHHHHHTHHHHHHHHHT-TTCEEEEEE-CCSSCB------HHHHHHHHHHH------HHTTCSEEEEEE
T ss_pred CeEEEEE---ChHHHHHHHHHHHHHHHH-cCCeEEEEe-eCCCCC------HHHHHHHHHHH------HhcCCCEEEEeC
Confidence 7899999 34333 346788888865 455542111 111111 01111100011 023579999999
Q ss_pred CchhHHHHHHHcCC-CCCcEEEEeC
Q psy5950 251 GDGTLLYASLLFQQ-SVPPVMAFHL 274 (511)
Q Consensus 251 GDGTlL~Aar~~~~-~~~PILGINl 274 (511)
| |+++-+++.+.. ..+|++.|-+
T Consensus 95 G-Gsv~D~aK~iA~~~~~p~i~IPT 118 (370)
T 1jq5_A 95 G-GKTLDTAKAVADELDAYIVIVPT 118 (370)
T ss_dssp S-HHHHHHHHHHHHHHTCEEEEEES
T ss_pred C-hHHHHHHHHHHHhcCCCEEEecc
Confidence 9 999999997663 3788988875
No 68
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=63.04 E-value=11 Score=39.65 Aligned_cols=84 Identities=20% Similarity=0.192 Sum_probs=49.5
Q ss_pred cEEEEEecCCChhhH-HHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEEc
Q psy5950 172 LTVLVIKKVRDVSVL-QPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICLG 250 (511)
Q Consensus 172 ~~VlII~K~~~~~~~-~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvLG 250 (511)
++++||+- +.+. ....++.+.|.+. ++.+.+.. ....+ ....+.+ +.. ...+ ++|+||.||
T Consensus 92 ~rvlIVtd---~~~~~~~~~~v~~~L~~~-gi~~~~~~-~~ge~------~~~~v~~-~~~---~~~~---~~D~IIAvG 153 (450)
T 1ta9_A 92 KSAVVLAD---QNVWNICANKIVDSLSQN-GMTVTKLV-FGGEA------SLVELDK-LRK---QCPD---DTQVIIGVG 153 (450)
T ss_dssp SEEEEEEE---HHHHHHTHHHHHHHHHHT-TCEEEEEE-ECSCC------CHHHHHH-HHT---TSCT---TCCEEEEEE
T ss_pred CEEEEEEC---ccHHHHHHHHHHHHHHHC-CCeEEEEe-eCCCC------CHHHHHH-HHH---HHhh---CCCEEEEeC
Confidence 48999993 3333 3567888888754 45542110 01111 1011111 111 1111 789999999
Q ss_pred CchhHHHHHHHcCC-CCCcEEEEeC
Q psy5950 251 GDGTLLYASLLFQQ-SVPPVMAFHL 274 (511)
Q Consensus 251 GDGTlL~Aar~~~~-~~~PILGINl 274 (511)
| |+++-+++.+.. ..+|++.|-+
T Consensus 154 G-GSviD~AK~iA~~~giP~I~IPT 177 (450)
T 1ta9_A 154 G-GKTMDSAKYIAHSMNLPSIICPT 177 (450)
T ss_dssp S-HHHHHHHHHHHHHTTCCEEEEES
T ss_pred C-cHHHHHHHHHHHhcCCCEEEEeC
Confidence 9 999999997664 4789998876
No 69
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=62.64 E-value=27 Score=28.56 Aligned_cols=58 Identities=17% Similarity=0.299 Sum_probs=39.8
Q ss_pred CCccEEEE----EcCch-hHHHHHHHcCCCCCcEEEEeC-------------CCccccc-cCCcccHHHHHHHHHcCC
Q psy5950 241 DKIDFIIC----LGGDG-TLLYASLLFQQSVPPVMAFHL-------------GSLGFLT-PFEFENFEDQVTNVLEGH 299 (511)
Q Consensus 241 ~~~DlVIv----LGGDG-TlL~Aar~~~~~~~PILGINl-------------G~LGFLt-~~~~~~~~~~L~~il~G~ 299 (511)
..+|+||+ -+.|| .+++..+... ..+||+-+.. |-.+||. +++.+++...|.+++++.
T Consensus 48 ~~~dlvi~d~~l~~~~g~~~~~~l~~~~-~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~ 124 (143)
T 3jte_A 48 NSIDVVITDMKMPKLSGMDILREIKKIT-PHMAVIILTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINRK 124 (143)
T ss_dssp TTCCEEEEESCCSSSCHHHHHHHHHHHC-TTCEEEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCcHHHHHHHHHHhC-CCCeEEEEECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHHHHH
Confidence 35788777 24566 3555555532 4678876543 6678886 889999999999888753
No 70
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=62.62 E-value=2.7 Score=43.13 Aligned_cols=33 Identities=24% Similarity=0.618 Sum_probs=27.7
Q ss_pred CCccEEEEEcCchhHHHHHHHcCC-CCCcEEEEeC
Q psy5950 241 DKIDFIICLGGDGTLLYASLLFQQ-SVPPVMAFHL 274 (511)
Q Consensus 241 ~~~DlVIvLGGDGTlL~Aar~~~~-~~~PILGINl 274 (511)
.++|+||.+|| |+.+-+++.+.. ..+|++.|..
T Consensus 87 ~~~D~IIavGG-Gs~iD~aK~iA~~~~~P~i~IPT 120 (364)
T 3iv7_A 87 NEIDLLVCVGG-GSTIGLAKAIAMTTALPIVAIPT 120 (364)
T ss_dssp TTCCEEEEEES-HHHHHHHHHHHHHHCCCEEEEEC
T ss_pred cCCCEEEEeCC-cHHHHHHHHHHhccCCCEEEEcC
Confidence 46899999999 999999987653 5789999876
No 71
>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1
Probab=62.24 E-value=11 Score=35.15 Aligned_cols=36 Identities=19% Similarity=0.307 Sum_probs=25.3
Q ss_pred CCccEEEEEcCchhHH----------HHHHHcCCCCCcEEEEeCCC
Q psy5950 241 DKIDFIICLGGDGTLL----------YASLLFQQSVPPVMAFHLGS 276 (511)
Q Consensus 241 ~~~DlVIvLGGDGTlL----------~Aar~~~~~~~PILGINlG~ 276 (511)
.++|.||.-||-++.. ...+.+...++|||||-.|.
T Consensus 59 ~~~Dglil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~ 104 (219)
T 1q7r_A 59 EGLDGLVLPGGESTTMRRLIDRYGLMEPLKQFAAAGKPMFGTCAGL 104 (219)
T ss_dssp TTCSEEEECCCCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETTHH
T ss_pred hhCCEEEECCCChHHHHHHhhhhHHHHHHHHHHHcCCeEEEECHHH
Confidence 3589999999976542 23333334689999999873
No 72
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=61.91 E-value=38 Score=26.89 Aligned_cols=57 Identities=23% Similarity=0.443 Sum_probs=37.9
Q ss_pred CccEEEE---E-cCchh-HHHHHHHcCCCCCcEEEEeC-------------CCccccc-cCCcccHHHHHHHHHcCC
Q psy5950 242 KIDFIIC---L-GGDGT-LLYASLLFQQSVPPVMAFHL-------------GSLGFLT-PFEFENFEDQVTNVLEGH 299 (511)
Q Consensus 242 ~~DlVIv---L-GGDGT-lL~Aar~~~~~~~PILGINl-------------G~LGFLt-~~~~~~~~~~L~~il~G~ 299 (511)
.+|+||+ + |.||- +++..+.. ...+||+-+.. |-.|||. +++.+++...|++++.+.
T Consensus 47 ~~dlvl~D~~l~~~~g~~~~~~l~~~-~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 122 (124)
T 1srr_A 47 RPDLVLLDMKIPGMDGIEILKRMKVI-DENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLPLK 122 (124)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHH-CTTCEEEEEESSCCHHHHHHHHHHTCCCEEESSCCHHHHHHHHHHHSCC-
T ss_pred CCCEEEEecCCCCCCHHHHHHHHHHh-CCCCCEEEEEccCchHHHHHHHhcChHhhccCCCCHHHHHHHHHHHhccc
Confidence 4687776 2 45663 45555543 34678887632 6678886 888899999998887653
No 73
>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV}
Probab=61.73 E-value=28 Score=33.65 Aligned_cols=99 Identities=12% Similarity=0.170 Sum_probs=52.7
Q ss_pred cCCCCcEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEE
Q psy5950 167 WYKPPLTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFI 246 (511)
Q Consensus 167 w~~~p~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlV 246 (511)
|. ++++|+|+.-++ -+..+ +.-.++.|....+.+|.+-..... .+.....+. +.. ....++....+|+|
T Consensus 20 ~~-m~~~I~ill~~g-f~~~e-~~~p~dvl~~~~~~~v~~vs~~~~--~V~~~~G~~-----i~~-d~~l~~~~~~yD~l 88 (253)
T 3ewn_A 20 WM-GDEQIAMLVYPG-MTVMD-LVGPHCMFGSLMGAKIYIVAKSLD--PVTSDAGLA-----IVP-TATFGTCPRDLTVL 88 (253)
T ss_dssp CC-CCCEEEEECCTT-BCHHH-HHHHHHHHTTSTTCEEEEEESSSS--CEECTTSCE-----ECC-SEETTTSCSSCSEE
T ss_pred cC-CCeEEEEEeCCC-CcHHH-HHHHHHHHHhCCCCEEEEEeCCCC--eEEcCCCCE-----EeC-CcCHHHcCCCCCEE
Confidence 55 567899988543 22322 334556663344555443221111 011111110 000 00123344457999
Q ss_pred EEEcCc-hh--------HHHHHHHcCCCCCcEEEEeCCC
Q psy5950 247 ICLGGD-GT--------LLYASLLFQQSVPPVMAFHLGS 276 (511)
Q Consensus 247 IvLGGD-GT--------lL~Aar~~~~~~~PILGINlG~ 276 (511)
|+-||. |+ ++...+.+.....+|.+|-.|.
T Consensus 89 iVPGG~~g~~~l~~~~~l~~~Lr~~~~~gk~IaaICtG~ 127 (253)
T 3ewn_A 89 FAPGGTDGTLAAASDAETLAFMADRGARAKYITSVCSGS 127 (253)
T ss_dssp EECCBSHHHHHHTTCHHHHHHHHHHHTTCSEEEEETTHH
T ss_pred EECCCccchhhhccCHHHHHHHHHHHHcCCEEEEEChHH
Confidence 999998 75 4555666667788999999885
No 74
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=61.56 E-value=4.7 Score=46.57 Aligned_cols=55 Identities=18% Similarity=0.245 Sum_probs=40.1
Q ss_pred CccEEEEEcCchhHHHHHHHcC----------------------CCCCcEEEEeC-------C---CccccccCCcccHH
Q psy5950 242 KIDFIICLGGDGTLLYASLLFQ----------------------QSVPPVMAFHL-------G---SLGFLTPFEFENFE 289 (511)
Q Consensus 242 ~~DlVIvLGGDGTlL~Aar~~~----------------------~~~~PILGINl-------G---~LGFLt~~~~~~~~ 289 (511)
++|.+|++|||||+-.|..+.. ...+||+||-- | ++||-|.++ .+-
T Consensus 276 gId~LvvIGGDGS~~gA~~l~~e~~~l~~eL~~~gkis~e~~~~~~~i~VVGIPkTIDNDl~gTD~TiGfdTAv~--~i~ 353 (941)
T 3opy_B 276 GIDALIVCGGDGSLTGADRFRSEWPSLIEELLQTEQISQQQFNTHQNLNICGAVGSIDNDMSSTDATIGAFSSLD--RIC 353 (941)
T ss_dssp TCCEEEEEECHHHHHHHHHHHHTCCCCCCC--------CHHHHHTCSCEEEEEEEESSCCCSSCSSCEEHHHHHH--HHH
T ss_pred CCCEEEEeCCChhHHHHHHHHHhhhHHHHHHHhhccccHHHHhcCCCCcEEEEeecccCCCCCCCCCCChHHHHH--HHH
Confidence 6899999999999988765321 13689999842 2 778887754 566
Q ss_pred HHHHHHHcC
Q psy5950 290 DQVTNVLEG 298 (511)
Q Consensus 290 ~~L~~il~G 298 (511)
++|+++..-
T Consensus 354 eaId~I~~t 362 (941)
T 3opy_B 354 RAIDYIDAT 362 (941)
T ss_dssp HHHHHHHSC
T ss_pred HHHHHHHhh
Confidence 777777653
No 75
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=61.37 E-value=51 Score=26.81 Aligned_cols=57 Identities=18% Similarity=0.371 Sum_probs=38.1
Q ss_pred CccEEEEE---cCch-hHHHHHHHcCCCCCcEEEEeC-------------CCccccc-cCCcccHHHHHHHHHcCC
Q psy5950 242 KIDFIICL---GGDG-TLLYASLLFQQSVPPVMAFHL-------------GSLGFLT-PFEFENFEDQVTNVLEGH 299 (511)
Q Consensus 242 ~~DlVIvL---GGDG-TlL~Aar~~~~~~~PILGINl-------------G~LGFLt-~~~~~~~~~~L~~il~G~ 299 (511)
.+|+||+= |.|| .+++..+.. ...+||+.+.. |-.+||. +++.+++...|.+++.+.
T Consensus 48 ~~dlvi~d~~~~~~g~~~~~~l~~~-~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 122 (142)
T 2qxy_A 48 KIDLVFVDVFEGEESLNLIRRIREE-FPDTKVAVLSAYVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKIISST 122 (142)
T ss_dssp CCSEEEEECTTTHHHHHHHHHHHHH-CTTCEEEEEESCCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC-
T ss_pred CCCEEEEeCCCCCcHHHHHHHHHHH-CCCCCEEEEECCCCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHHhhc
Confidence 46877763 3344 244444443 23678887742 6678886 889999999999998864
No 76
>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1
Probab=61.17 E-value=7.3 Score=37.16 Aligned_cols=80 Identities=15% Similarity=0.135 Sum_probs=45.6
Q ss_pred CcEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEEc
Q psy5950 171 PLTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICLG 250 (511)
Q Consensus 171 p~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvLG 250 (511)
-.+|+||.+....... -+.+||++ .++.+.+-.....+ ...+....+|.+|.-|
T Consensus 12 ~~~~~~i~~~~~~~~~----~i~~~l~~-~G~~v~v~~~~~~~---------------------~~~~~l~~~Dglil~G 65 (239)
T 1o1y_A 12 HVRVLAIRHVEIEDLG----MMEDIFRE-KNWSFDYLDTPKGE---------------------KLERPLEEYSLVVLLG 65 (239)
T ss_dssp CCEEEEECSSTTSSCT----HHHHHHHH-TTCEEEEECGGGTC---------------------CCSSCGGGCSEEEECC
T ss_pred eeEEEEEECCCCCCch----HHHHHHHh-CCCcEEEeCCcCcc---------------------ccccchhcCCEEEECC
Confidence 4579999976544332 46677765 35555322110000 0111124689999999
Q ss_pred Cchh------------HHHHHHHcCCCCCcEEEEeCCC
Q psy5950 251 GDGT------------LLYASLLFQQSVPPVMAFHLGS 276 (511)
Q Consensus 251 GDGT------------lL~Aar~~~~~~~PILGINlG~ 276 (511)
|-++ ++...+.+...++|||||-+|.
T Consensus 66 G~~~~~~~~~~~~l~~~~~~i~~~~~~~~PiLGIC~G~ 103 (239)
T 1o1y_A 66 GYMGAYEEEKYPFLKYEFQLIEEILKKEIPFLGICLGS 103 (239)
T ss_dssp CSCCTTCTTTCTHHHHHHHHHHHHHHHTCCEEEETHHH
T ss_pred CCccccCCccChhHHHHHHHHHHHHHCCCCEEEEchhH
Confidence 7633 3444454444578999999873
No 77
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=61.03 E-value=20 Score=35.35 Aligned_cols=92 Identities=18% Similarity=0.153 Sum_probs=54.6
Q ss_pred CCcEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEE
Q psy5950 170 PPLTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICL 249 (511)
Q Consensus 170 ~p~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvL 249 (511)
+|.+||||.+....+.......|.+.|++.++++|-+...... .++. ..| .++ .+++|+|| +
T Consensus 3 ~~~kvLiv~G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~~~----~~d~---------~~f---~~~-L~~~D~vV-~ 64 (281)
T 4e5v_A 3 KPIKTLLITGQNNHNWQVSHVVLKQILENSGRFDVDFVISPEQ----GKDM---------SGF---VLD-FSPYQLVV-L 64 (281)
T ss_dssp CCEEEEEEESCCSSCHHHHHHHHHHHHHHTTSEEEEEEECCCT----TSCC---------TTC---CCC-CTTCSEEE-E
T ss_pred CceEEEEEcCCCCCChHHHHHHHHHHHHhcCCEEEEEEeCCcc----ccch---------hHH---hhh-hhcCCEEE-E
Confidence 4779999998655556677778888887765577765432110 0000 011 022 35689999 4
Q ss_pred cCchhH-----HHHHHHcCCCCCcEEEEeCCCccc
Q psy5950 250 GGDGTL-----LYASLLFQQSVPPVMAFHLGSLGF 279 (511)
Q Consensus 250 GGDGTl-----L~Aar~~~~~~~PILGINlG~LGF 279 (511)
--.|-. ..+...+...+.+++|++.+.-.|
T Consensus 65 ~~~~~~l~~~~~~~l~~yV~~Ggglv~~H~a~~~~ 99 (281)
T 4e5v_A 65 DYNGDSWPEETNRRFLEYVQNGGGVVIYHAADNAF 99 (281)
T ss_dssp CCCSSCCCHHHHHHHHHHHHTTCEEEEEGGGGGSC
T ss_pred eCCCCcCCHHHHHHHHHHHHcCCCEEEEecccccC
Confidence 443332 233334445688999999876554
No 78
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=60.64 E-value=85 Score=27.34 Aligned_cols=56 Identities=9% Similarity=0.054 Sum_probs=39.1
Q ss_pred CccEEEEE----cCchhHHHHHHHcCCCCCcEEEEeC-------------CCccccc-cCCcccHHHHHHHHHcC
Q psy5950 242 KIDFIICL----GGDGTLLYASLLFQQSVPPVMAFHL-------------GSLGFLT-PFEFENFEDQVTNVLEG 298 (511)
Q Consensus 242 ~~DlVIvL----GGDGTlL~Aar~~~~~~~PILGINl-------------G~LGFLt-~~~~~~~~~~L~~il~G 298 (511)
.+|+||+= |.||.++...+... ..+||+-+.. |-.|||. |++++++...|..++.+
T Consensus 52 ~~dlvl~D~~mp~~~g~l~~~~~~~~-~~~~ii~lt~~~~~~~~~~a~~~ga~~~l~KP~~~~~L~~~l~~~~~~ 125 (196)
T 1qo0_D 52 PVDVVFTSIFQNRHHDEIAALLAAGT-PRTTLVALVEYESPAVLSQIIELECHGVITQPLDAHRVLPVLVSARRI 125 (196)
T ss_dssp CCSEEEEECCSSTHHHHHHHHHHHSC-TTCEEEEEECCCSHHHHHHHHHHTCSEEEESSCCGGGHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCccchHHHHHHhccC-CCCCEEEEEcCCChHHHHHHHHcCCCeeEecCcCHHHHHHHHHHHHHH
Confidence 57887762 44677655555542 5678887642 6778886 89999999988877653
No 79
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=60.61 E-value=48 Score=27.13 Aligned_cols=56 Identities=16% Similarity=0.273 Sum_probs=37.4
Q ss_pred CccEEEE----EcCch-hHHHHHHHc-CCCCCcEEEEe-------------CCCccccc-cC-CcccHHHHHHHHHc
Q psy5950 242 KIDFIIC----LGGDG-TLLYASLLF-QQSVPPVMAFH-------------LGSLGFLT-PF-EFENFEDQVTNVLE 297 (511)
Q Consensus 242 ~~DlVIv----LGGDG-TlL~Aar~~-~~~~~PILGIN-------------lG~LGFLt-~~-~~~~~~~~L~~il~ 297 (511)
.+|+||+ -|+|| .++...+.. ....+||+-+. .|-.+||. ++ +.+++...|+++++
T Consensus 51 ~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l~ 127 (144)
T 3kht_A 51 KYDLIILDIGLPIANGFEVMSAVRKPGANQHTPIVILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFS 127 (144)
T ss_dssp CCSEEEECTTCGGGCHHHHHHHHHSSSTTTTCCEEEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHH
Confidence 4788877 24455 355555542 12467888765 36678886 88 88888888888775
No 80
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=60.41 E-value=4.1 Score=47.19 Aligned_cols=56 Identities=23% Similarity=0.380 Sum_probs=40.0
Q ss_pred CCccEEEEEcCchhHHHHHHHcC----------------------CCCCcEEEEeC-------C---CccccccCCcccH
Q psy5950 241 DKIDFIICLGGDGTLLYASLLFQ----------------------QSVPPVMAFHL-------G---SLGFLTPFEFENF 288 (511)
Q Consensus 241 ~~~DlVIvLGGDGTlL~Aar~~~----------------------~~~~PILGINl-------G---~LGFLt~~~~~~~ 288 (511)
.++|.+|++|||||+-.|..+.. ...+||+||-- | ++||-|.++ .+
T Consensus 303 ~gId~LvvIGGDGS~~gA~~L~~e~~~l~~eL~~~gkls~~~~~~~~~i~VVGIPkTIDNDl~gTD~TiGFdTAl~--~i 380 (989)
T 3opy_A 303 NGIDALVVCGGDGSLTGADLFRKEWPELIKELLGEDKITKEQYETHRNLTIVGLVGSIDNDMCGTDSTIGAYSSLE--RI 380 (989)
T ss_dssp TTCCEEEEEECHHHHHHHHHHHHHTTCCCCC--------CHHHHHTTSCEEEEEEEESSCCCTTCSCCEEHHHHHH--HH
T ss_pred cCCCEEEEeCCChhhHHHHHHHHHhhHHHHHHHHccccchhhhhccCCCcEEEEeecccCCCCCCCCCCChhhHHH--HH
Confidence 46899999999999988765321 14689999842 3 778887654 45
Q ss_pred HHHHHHHHcC
Q psy5950 289 EDQVTNVLEG 298 (511)
Q Consensus 289 ~~~L~~il~G 298 (511)
-++|+++..-
T Consensus 381 ~eaId~I~~T 390 (989)
T 3opy_A 381 IELVDYIDAT 390 (989)
T ss_dssp HHHHHHHHSS
T ss_pred HHHHHHHHhh
Confidence 5677776654
No 81
>3clh_A 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, DHQS, amino-acid biosynthesis, cytoplasm, lyase, NAD; HET: NAD; 2.40A {Helicobacter pylori}
Probab=60.09 E-value=5.3 Score=40.32 Aligned_cols=32 Identities=16% Similarity=0.179 Sum_probs=25.8
Q ss_pred CccEEEEEcCchhHHHHHHHcC---CCCCcEEEEeC
Q psy5950 242 KIDFIICLGGDGTLLYASLLFQ---QSVPPVMAFHL 274 (511)
Q Consensus 242 ~~DlVIvLGGDGTlL~Aar~~~---~~~~PILGINl 274 (511)
..|+||.+|| |.++-++..+. ...+|++-|-+
T Consensus 85 r~d~iIavGG-Gsv~D~ak~~A~~~~rgip~i~IPT 119 (343)
T 3clh_A 85 RHSLMIALGG-GVISDMVGFASSIYFRGIDFINIPT 119 (343)
T ss_dssp TTCEEEEEES-HHHHHHHHHHHHHBTTCCEEEEEEC
T ss_pred CCceEEEECC-hHHHHHHHHHHHHhccCCCEEEeCC
Confidence 3499999999 99999988765 45788888763
No 82
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=59.72 E-value=37 Score=27.17 Aligned_cols=58 Identities=19% Similarity=0.175 Sum_probs=37.6
Q ss_pred ccEEEEE----cCch-hHHHHHHHcCCCCCcEEEEeC------------------CCccccc-cCCcccHHHHHHHHHcC
Q psy5950 243 IDFIICL----GGDG-TLLYASLLFQQSVPPVMAFHL------------------GSLGFLT-PFEFENFEDQVTNVLEG 298 (511)
Q Consensus 243 ~DlVIvL----GGDG-TlL~Aar~~~~~~~PILGINl------------------G~LGFLt-~~~~~~~~~~L~~il~G 298 (511)
+|+||+= +.|| .+++..+... ..+||+-+.. |-.+||. +++.+++...|.++..|
T Consensus 47 ~dlvi~D~~l~~~~g~~~~~~l~~~~-~~~~ii~~s~~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~~ 125 (135)
T 3eqz_A 47 QDIIILDLMMPDMDGIEVIRHLAEHK-SPASLILISGYDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSNR 125 (135)
T ss_dssp TEEEEEECCTTTTHHHHHHHHHHHTT-CCCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCC-CCCCEEEEEeccchhHHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHhh
Confidence 7888772 5555 3455555432 4568876643 2236776 89999999999999887
Q ss_pred CcE
Q psy5950 299 HAA 301 (511)
Q Consensus 299 ~~~ 301 (511)
...
T Consensus 126 ~~~ 128 (135)
T 3eqz_A 126 QAE 128 (135)
T ss_dssp C--
T ss_pred ccc
Confidence 643
No 83
>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}
Probab=59.66 E-value=17 Score=32.59 Aligned_cols=35 Identities=26% Similarity=0.356 Sum_probs=24.2
Q ss_pred CCccEEEEEcCchhHHHH-------HHHcCCCCCcEEEEeCC
Q psy5950 241 DKIDFIICLGGDGTLLYA-------SLLFQQSVPPVMAFHLG 275 (511)
Q Consensus 241 ~~~DlVIvLGGDGTlL~A-------ar~~~~~~~PILGINlG 275 (511)
.++|.+|.-||-++.... ...+...++|||||-.|
T Consensus 36 ~~~dglil~GG~~~~~~~~~~~~~~~~~i~~~~~PilGIC~G 77 (186)
T 2ywj_A 36 EGIDALIIPGGESTAIGKLMKKYGLLEKIKNSNLPILGTCAG 77 (186)
T ss_dssp TTCSEEEECCSCHHHHHHHHHHTTHHHHHHTCCCCEEEETHH
T ss_pred ccCCEEEECCCCchhhhhhhhccCHHHHHHhcCCcEEEECHH
Confidence 357999999997765421 12222567999999987
No 84
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=59.37 E-value=4.5 Score=45.74 Aligned_cols=53 Identities=21% Similarity=0.281 Sum_probs=37.0
Q ss_pred CccEEEEEcCchhHHHHHHHc-----------C-----------CCCCcEEEEeC-------C---CccccccCCcccHH
Q psy5950 242 KIDFIICLGGDGTLLYASLLF-----------Q-----------QSVPPVMAFHL-------G---SLGFLTPFEFENFE 289 (511)
Q Consensus 242 ~~DlVIvLGGDGTlL~Aar~~-----------~-----------~~~~PILGINl-------G---~LGFLt~~~~~~~~ 289 (511)
++|.+|++|||||+-.|..+. . ...+||+||-- | ++||-|.++ .+-
T Consensus 98 ~Id~LvvIGGdgS~~~A~~l~~e~~~l~~eL~~~~~is~e~~~~~~~i~vVGiPkTIDNDl~gTD~TiGfdTA~~--~i~ 175 (766)
T 3o8o_B 98 GVDALIVCGGDGSLTGADLFRSEWPSLIEELLKTNRISNEQYERMKHLNICGTVGSIDNDMSTTDATIGAYSALD--RIC 175 (766)
T ss_dssp TCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHTCCCEEEEEEBCTTCCCTTCSCCBTHHHHHH--HHH
T ss_pred CCCEEEEeCCChhHHHHHHHHHhhhHHHHHHHhcccccHHHHhcCCCCcEEEEeccccCCCCCCCCCCChhHHHH--HHH
Confidence 689999999999998876431 1 24789999843 3 778887754 344
Q ss_pred HHHHHHH
Q psy5950 290 DQVTNVL 296 (511)
Q Consensus 290 ~~L~~il 296 (511)
++|+++.
T Consensus 176 eaid~i~ 182 (766)
T 3o8o_B 176 KAIDYVE 182 (766)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555553
No 85
>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=59.30 E-value=9.8 Score=34.18 Aligned_cols=34 Identities=15% Similarity=0.113 Sum_probs=23.0
Q ss_pred CccEEEEEcCc-hh---------HHHHHHHcCCCC-CcEEEEeCC
Q psy5950 242 KIDFIICLGGD-GT---------LLYASLLFQQSV-PPVMAFHLG 275 (511)
Q Consensus 242 ~~DlVIvLGGD-GT---------lL~Aar~~~~~~-~PILGINlG 275 (511)
++|.+|.-||- ++ ++...+.+...+ +|||||-.|
T Consensus 39 ~~dglil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~~PilGiC~G 83 (191)
T 2ywd_A 39 GLKALIVPGGESTTIGKLAREYGIEDEVRKRVEEGSLALFGTCAG 83 (191)
T ss_dssp TCSEEEECSSCHHHHHHHHHHTTHHHHHHHHHHTTCCEEEEETHH
T ss_pred cCCEEEECCCChhhhHHhhhhhhHHHHHHHHHHCCCCeEEEECHH
Confidence 47999999993 22 233344443457 899999877
No 86
>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}
Probab=58.75 E-value=9.9 Score=35.13 Aligned_cols=35 Identities=26% Similarity=0.241 Sum_probs=24.9
Q ss_pred CccEEEEEcCchhHH----------HHHHHcCCCCCcEEEEeCCC
Q psy5950 242 KIDFIICLGGDGTLL----------YASLLFQQSVPPVMAFHLGS 276 (511)
Q Consensus 242 ~~DlVIvLGGDGTlL----------~Aar~~~~~~~PILGINlG~ 276 (511)
++|.||.-||..+.. ...+.+...++|||||-.|.
T Consensus 57 ~~d~iil~GG~~~~~~~~~~~~~~~~~i~~~~~~g~PilGIC~G~ 101 (208)
T 2iss_D 57 MVDGLILPGGESTTMIRILKEMDMDEKLVERINNGLPVFATCAGV 101 (208)
T ss_dssp GCSEEEECSSCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETHHH
T ss_pred hCCEEEECCCcHHHHHhhhhhhhHHHHHHHHHHCCCeEEEECHHH
Confidence 579999999976643 23344434679999998873
No 87
>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}
Probab=58.59 E-value=8.5 Score=35.17 Aligned_cols=36 Identities=19% Similarity=0.218 Sum_probs=25.3
Q ss_pred CCccEEEEEcCchh--------------HHHHHHHcCCCCCcEEEEeCCC
Q psy5950 241 DKIDFIICLGGDGT--------------LLYASLLFQQSVPPVMAFHLGS 276 (511)
Q Consensus 241 ~~~DlVIvLGGDGT--------------lL~Aar~~~~~~~PILGINlG~ 276 (511)
.++|.+|+-||-++ ++...+.+...++||+||-.|.
T Consensus 40 ~~~d~lil~Gg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pilgIC~G~ 89 (213)
T 3d54_D 40 DDYELIILPGGFSYGDYLRPGAVAAREKIAFEIAKAAERGKLIMGICNGF 89 (213)
T ss_dssp SSCSEEEECEECGGGGCSSTTHHHHTSTTHHHHHHHHHHTCEEEECHHHH
T ss_pred ccCCEEEECCCCchhhhhccccccccHHHHHHHHHHHHCCCEEEEECHHH
Confidence 46799999998542 3444554445578999998873
No 88
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=58.21 E-value=38 Score=27.35 Aligned_cols=56 Identities=13% Similarity=0.233 Sum_probs=38.9
Q ss_pred CccEEEEE-----cCchh-HHHHHHHcCCCCCcEEEEe-------------CCCccccc-cCCcccHHHHHHHHHcCC
Q psy5950 242 KIDFIICL-----GGDGT-LLYASLLFQQSVPPVMAFH-------------LGSLGFLT-PFEFENFEDQVTNVLEGH 299 (511)
Q Consensus 242 ~~DlVIvL-----GGDGT-lL~Aar~~~~~~~PILGIN-------------lG~LGFLt-~~~~~~~~~~L~~il~G~ 299 (511)
.+|+||+= +.||. +++..+.. ..+||+-+. .|-.+||. +++.+++...|.+++++.
T Consensus 54 ~~dlii~d~~~~~~~~g~~~~~~l~~~--~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 129 (140)
T 3cg0_A 54 RPDIALVDIMLCGALDGVETAARLAAG--CNLPIIFITSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAIHKK 129 (140)
T ss_dssp CCSEEEEESSCCSSSCHHHHHHHHHHH--SCCCEEEEECCCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEecCCCCCCCHHHHHHHHHhC--CCCCEEEEecCCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHhcc
Confidence 46888762 35663 56666554 467888763 25667876 888899999998887753
No 89
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=57.14 E-value=39 Score=27.47 Aligned_cols=58 Identities=12% Similarity=0.118 Sum_probs=38.2
Q ss_pred CccEEEE----EcCch-hHHHHHHHc-CCCCCcEEEEe--------------CCCccccc-cCCcccHHHHHHHHHcCC
Q psy5950 242 KIDFIIC----LGGDG-TLLYASLLF-QQSVPPVMAFH--------------LGSLGFLT-PFEFENFEDQVTNVLEGH 299 (511)
Q Consensus 242 ~~DlVIv----LGGDG-TlL~Aar~~-~~~~~PILGIN--------------lG~LGFLt-~~~~~~~~~~L~~il~G~ 299 (511)
.+|+||+ -|.|| .+++..+.. ....+||+-+. .|-.+||. +++.+++...|.+++++.
T Consensus 50 ~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~~~ 128 (140)
T 3grc_A 50 PYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAIVVVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAIDNM 128 (140)
T ss_dssp CCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEEEEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCEEEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHHhc
Confidence 4677777 24555 344444442 12467887653 25567776 899999999999998764
No 90
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=56.77 E-value=17 Score=29.63 Aligned_cols=57 Identities=23% Similarity=0.202 Sum_probs=38.7
Q ss_pred CccEEEE----EcCch-hHHHHHHHcCCCCCcEEEEe-------------CCCccccc-cCCcccHHHHHHHHHcCC
Q psy5950 242 KIDFIIC----LGGDG-TLLYASLLFQQSVPPVMAFH-------------LGSLGFLT-PFEFENFEDQVTNVLEGH 299 (511)
Q Consensus 242 ~~DlVIv----LGGDG-TlL~Aar~~~~~~~PILGIN-------------lG~LGFLt-~~~~~~~~~~L~~il~G~ 299 (511)
.+|+||+ -++|| .+++..+... ..+||+-+. .|-.+||. +++.+++...|++++++.
T Consensus 51 ~~dlvi~d~~l~~~~g~~~~~~l~~~~-~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 126 (137)
T 3hdg_A 51 APDVIITDIRMPKLGGLEMLDRIKAGG-AKPYVIVISAFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFRHIK 126 (137)
T ss_dssp CCSEEEECSSCSSSCHHHHHHHHHHTT-CCCEEEECCCCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CCCcEEEEecCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHHHH
Confidence 4677776 24455 3555555433 467787653 26678886 899999999999998764
No 91
>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2
Probab=56.01 E-value=40 Score=30.54 Aligned_cols=36 Identities=25% Similarity=0.366 Sum_probs=27.7
Q ss_pred CCccEEEEEcCchh--------HHHHHHHcCCCCCcEEEEeCCC
Q psy5950 241 DKIDFIICLGGDGT--------LLYASLLFQQSVPPVMAFHLGS 276 (511)
Q Consensus 241 ~~~DlVIvLGGDGT--------lL~Aar~~~~~~~PILGINlG~ 276 (511)
.++|.||+.||-|. ++...+.+...+.||.||-.|.
T Consensus 85 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~gk~i~aIC~G~ 128 (193)
T 1oi4_A 85 AEFDALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGP 128 (193)
T ss_dssp GGCSEEEECCBTHHHHHTTSHHHHHHHHHHHHTTCCEEEETTTH
T ss_pred ccCCEEEECCCcCHHHhhhCHHHHHHHHHHHHcCCEEEEECHHH
Confidence 46899999999553 5555666656789999999985
No 92
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=55.98 E-value=46 Score=30.29 Aligned_cols=56 Identities=18% Similarity=0.284 Sum_probs=38.5
Q ss_pred CccEEEEE----cCchh-HHHHHHHcCCCCCcEEEEe-------------CCCccccc-cCCcccHHHHHHHHHcCC
Q psy5950 242 KIDFIICL----GGDGT-LLYASLLFQQSVPPVMAFH-------------LGSLGFLT-PFEFENFEDQVTNVLEGH 299 (511)
Q Consensus 242 ~~DlVIvL----GGDGT-lL~Aar~~~~~~~PILGIN-------------lG~LGFLt-~~~~~~~~~~L~~il~G~ 299 (511)
.+|+||+= |.||. ++...+.. ..+||+-+. .|-.|||. +++++++...|..++.+.
T Consensus 49 ~~dlvilD~~l~~~~g~~~~~~lr~~--~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~ 123 (238)
T 2gwr_A 49 RPDLVLLDLMLPGMNGIDVCRVLRAD--SGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRN 123 (238)
T ss_dssp CCSEEEEESSCSSSCHHHHHHHHHTT--CCCCEEEEEETTCCSCHHHHHHTTCCEEEEESCCHHHHHHHHHHHCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhC--CCCcEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 46777762 45663 44544443 267888763 36678886 889999999999888764
No 93
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=55.62 E-value=61 Score=25.46 Aligned_cols=54 Identities=26% Similarity=0.369 Sum_probs=34.0
Q ss_pred CccEEEE---E-cCchh-HHHHHHHcCCCCCcEEEEeC-------------CCccccc-cCCcccHHHHHHHHHc
Q psy5950 242 KIDFIIC---L-GGDGT-LLYASLLFQQSVPPVMAFHL-------------GSLGFLT-PFEFENFEDQVTNVLE 297 (511)
Q Consensus 242 ~~DlVIv---L-GGDGT-lL~Aar~~~~~~~PILGINl-------------G~LGFLt-~~~~~~~~~~L~~il~ 297 (511)
.+|+||+ + |.||. +++..+. ...+||+-+.. |-.+||. +++.+++...|.+++.
T Consensus 46 ~~dlvi~d~~l~~~~g~~~~~~l~~--~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~ 118 (122)
T 1zgz_A 46 SVDLILLDINLPDENGLMLTRALRE--RSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLW 118 (122)
T ss_dssp CCSEEEEESCCSSSCHHHHHHHHHT--TCCCEEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCChHHHHHHHHh--cCCCCEEEEECCCChhhHHHHHHhCHHHHccCCCCHHHHHHHHHHHHH
Confidence 4677775 2 45663 4555554 34578876642 5667776 7888888877777653
No 94
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=55.06 E-value=63 Score=26.00 Aligned_cols=58 Identities=22% Similarity=0.290 Sum_probs=38.9
Q ss_pred CccEEEEE----cCchh-HHHHHHHc-CCCCCcEEEEe-------------CCCccccc-cCCcccHHHHHHHHHcCC
Q psy5950 242 KIDFIICL----GGDGT-LLYASLLF-QQSVPPVMAFH-------------LGSLGFLT-PFEFENFEDQVTNVLEGH 299 (511)
Q Consensus 242 ~~DlVIvL----GGDGT-lL~Aar~~-~~~~~PILGIN-------------lG~LGFLt-~~~~~~~~~~L~~il~G~ 299 (511)
.+|+||+= +.||. +++..+.. ....+||+-+. .|-.+||. +++.+++...|.+++++.
T Consensus 54 ~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 131 (143)
T 3cnb_A 54 KPDVVMLDLMMVGMDGFSICHRIKSTPATANIIVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQK 131 (143)
T ss_dssp CCSEEEEETTCTTSCHHHHHHHHHTSTTTTTSEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHTT
T ss_pred CCCEEEEecccCCCcHHHHHHHHHhCccccCCcEEEEeCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhh
Confidence 46877762 44553 44444442 22467888764 36678886 889999999999988764
No 95
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=54.53 E-value=14 Score=33.78 Aligned_cols=34 Identities=24% Similarity=0.311 Sum_probs=23.9
Q ss_pred CccEEEEEcCch---------hHHHHHHHcCCCCCcEEEEeCCC
Q psy5950 242 KIDFIICLGGDG---------TLLYASLLFQQSVPPVMAFHLGS 276 (511)
Q Consensus 242 ~~DlVIvLGGDG---------TlL~Aar~~~~~~~PILGINlG~ 276 (511)
++|.+|.-||-| -++...+.+ ..++|||||-+|.
T Consensus 45 ~~dglil~gG~~~~~~~~~~~~~~~~i~~~-~~~~PvLGIC~G~ 87 (195)
T 1qdl_B 45 DPDRLIISPGPGTPEKREDIGVSLDVIKYL-GKRTPILGVCLGH 87 (195)
T ss_dssp CCSEEEECCCSSCTTSHHHHTTHHHHHHHH-TTTSCEEEETHHH
T ss_pred CCCEEEECCCCCChhhhhhhhHHHHHHHHh-cCCCcEEEEehHH
Confidence 478888888843 333555554 5689999999884
No 96
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=54.36 E-value=47 Score=30.84 Aligned_cols=56 Identities=21% Similarity=0.316 Sum_probs=40.6
Q ss_pred CccEEEEE----cCch-hHHHHHHHcCCCCCcEEEEeC-------------CCccccc-cCCcccHHHHHHHHHcCC
Q psy5950 242 KIDFIICL----GGDG-TLLYASLLFQQSVPPVMAFHL-------------GSLGFLT-PFEFENFEDQVTNVLEGH 299 (511)
Q Consensus 242 ~~DlVIvL----GGDG-TlL~Aar~~~~~~~PILGINl-------------G~LGFLt-~~~~~~~~~~L~~il~G~ 299 (511)
.+|+||+= |+|| .+++..+. ...+||+-+.. |-.|||. +++++++...|..++.|.
T Consensus 81 ~~DlvllD~~lp~~~G~~l~~~lr~--~~~~~iI~lt~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~i~~~l~~~ 155 (249)
T 3q9s_A 81 HPDLILLDLGLPDFDGGDVVQRLRK--NSALPIIVLTARDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLRQR 155 (249)
T ss_dssp CCSEEEEECCSCHHHHHHHHHHHHT--TCCCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHCCC
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHc--CCCCCEEEEECCCCHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhhc
Confidence 46888772 4566 35555554 34678887754 6678987 899999999999999875
No 97
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=54.29 E-value=29 Score=28.11 Aligned_cols=58 Identities=16% Similarity=0.269 Sum_probs=40.8
Q ss_pred CccEEEE----EcCch-hHHHHHHHcCC-CCCcEEEEeC-------------CCccccc-cCCcccHHHHHHHHHcCC
Q psy5950 242 KIDFIIC----LGGDG-TLLYASLLFQQ-SVPPVMAFHL-------------GSLGFLT-PFEFENFEDQVTNVLEGH 299 (511)
Q Consensus 242 ~~DlVIv----LGGDG-TlL~Aar~~~~-~~~PILGINl-------------G~LGFLt-~~~~~~~~~~L~~il~G~ 299 (511)
.+|+||+ =|.|| .+++..+.... ..+||+-+.. |--+||. |++++++...|+.++.++
T Consensus 51 ~~dlvi~D~~~p~~~g~~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l~~~ 128 (129)
T 3h1g_A 51 DTKVLITDWNMPEMNGLDLVKKVRSDSRFKEIPIIMITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLGTN 128 (129)
T ss_dssp TCCEEEECSCCSSSCHHHHHHHHHTSTTCTTCCEEEEESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeEEEEeCCCChHHHHHHHHcCccEEEeCCCCHHHHHHHHHHHhccC
Confidence 4677775 36677 45666655322 4678887653 6668887 899999999999988753
No 98
>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A
Probab=53.87 E-value=36 Score=32.16 Aligned_cols=97 Identities=14% Similarity=0.048 Sum_probs=51.7
Q ss_pred CCCcEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEE
Q psy5950 169 KPPLTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIIC 248 (511)
Q Consensus 169 ~~p~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIv 248 (511)
+++++|+|+.-++=. .. .+.-.++.|....+.+|.+-..... + +.....+. +.. ....++. ..+|+||+
T Consensus 3 ~m~~~V~ill~~gf~-~~-e~~~p~evl~~~~~~~v~~vs~~~~-~-V~~~~G~~-----v~~-d~~l~~~-~~~D~liv 71 (231)
T 3noq_A 3 HMAVQIGFLLFPEVQ-QL-DLTGPHDVLASLPDVQVHLIWKEPG-P-VVASSGLV-----LQA-TTSFADC-PPLDVICI 71 (231)
T ss_dssp -CCEEEEEECCTTCC-HH-HHHHHHHHHTTSTTEEEEEEESSSE-E-EECTTSCE-----EEE-CEETTTC-CCCSEEEE
T ss_pred CCcEEEEEEEeCCCc-HH-HHHHHHHHHHcCCCCEEEEEECCCC-c-EEcCCCCE-----Eec-ccChhHC-CcCCEEEE
Confidence 467899998864322 22 2334556665424555543221111 0 11111111 000 0012233 45899999
Q ss_pred EcCchh--------HHHHHHHcCCCCCcEEEEeCCC
Q psy5950 249 LGGDGT--------LLYASLLFQQSVPPVMAFHLGS 276 (511)
Q Consensus 249 LGGDGT--------lL~Aar~~~~~~~PILGINlG~ 276 (511)
-||.|+ ++...+.+.....+|.+|-.|.
T Consensus 72 pGG~g~~~~~~~~~l~~~lr~~~~~g~~v~aiC~G~ 107 (231)
T 3noq_A 72 PGGTGVGALMEDPQALAFIRQQAARARYVTSVSTGS 107 (231)
T ss_dssp CCSTTHHHHTTCHHHHHHHHHHHTTCSEEEEETTHH
T ss_pred CCCCChhhhccCHHHHHHHHHHHhcCCEEEEECHHH
Confidence 999876 3455666667788999999885
No 99
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=52.94 E-value=82 Score=24.78 Aligned_cols=57 Identities=23% Similarity=0.347 Sum_probs=37.7
Q ss_pred CccEEEE---E-cCchh-HHHHHHHcC-CCCCcEEEEe-------------CCCccccc-cCCcccHHHHHHHHHcC
Q psy5950 242 KIDFIIC---L-GGDGT-LLYASLLFQ-QSVPPVMAFH-------------LGSLGFLT-PFEFENFEDQVTNVLEG 298 (511)
Q Consensus 242 ~~DlVIv---L-GGDGT-lL~Aar~~~-~~~~PILGIN-------------lG~LGFLt-~~~~~~~~~~L~~il~G 298 (511)
.+|+||+ + |.||. +++..+... ...+||+-+. .|-.|||. +++++++...|.+++..
T Consensus 46 ~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 122 (127)
T 2jba_A 46 WPDLILLAWMLPGGSGIQFIKHLRRESMTRDIPVVMLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMRR 122 (127)
T ss_dssp CCSEEEEESEETTEEHHHHHHHHHTSTTTTTSCEEEEEETTHHHHHHTTCCCSCSEEEEESCCHHHHHHHHHHHHHC
T ss_pred CCCEEEEecCCCCCCHHHHHHHHHhCcccCCCCEEEEeCCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhc
Confidence 4688876 3 44663 445444322 1467887763 36678886 89999999999888764
No 100
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=52.19 E-value=14 Score=36.21 Aligned_cols=59 Identities=27% Similarity=0.488 Sum_probs=45.6
Q ss_pred CCCCCCCccEEEEEcCchhHHHHHHHcCCCCCcEEEEeC-------------CCcccccc-----CCcccHHHHHHHHHc
Q psy5950 236 KDDLTDKIDFIICLGGDGTLLYASLLFQQSVPPVMAFHL-------------GSLGFLTP-----FEFENFEDQVTNVLE 297 (511)
Q Consensus 236 ~~~~~~~~DlVIvLGGDGTlL~Aar~~~~~~~PILGINl-------------G~LGFLt~-----~~~~~~~~~L~~il~ 297 (511)
..++...+|++|+=||=||++.|+.. ++|++.+.. +..|.+.+ .+.+++.++|.++++
T Consensus 280 ~~~ll~~ad~~v~~~G~~t~~Ea~~~----G~P~v~~p~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~ll~ 355 (391)
T 3tsa_A 280 LNLFLRTCELVICAGGSGTAFTATRL----GIPQLVLPQYFDQFDYARNLAAAGAGICLPDEQAQSDHEQFTDSIATVLG 355 (391)
T ss_dssp GGGTGGGCSEEEECCCHHHHHHHHHT----TCCEEECCCSTTHHHHHHHHHHTTSEEECCSHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHhhCCEEEeCCCHHHHHHHHHh----CCCEEecCCcccHHHHHHHHHHcCCEEecCcccccCCHHHHHHHHHHHHc
Confidence 34455789999999999999988765 889998644 23677765 467888899999887
Q ss_pred C
Q psy5950 298 G 298 (511)
Q Consensus 298 G 298 (511)
.
T Consensus 356 ~ 356 (391)
T 3tsa_A 356 D 356 (391)
T ss_dssp C
T ss_pred C
Confidence 5
No 101
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Probab=52.14 E-value=23 Score=36.33 Aligned_cols=31 Identities=16% Similarity=0.130 Sum_probs=26.0
Q ss_pred ccEEEEEcCchhHHHHHHHcC---CCCCcEEEEeC
Q psy5950 243 IDFIICLGGDGTLLYASLLFQ---QSVPPVMAFHL 274 (511)
Q Consensus 243 ~DlVIvLGGDGTlL~Aar~~~---~~~~PILGINl 274 (511)
.|+||.||| |.++-++..+. ...+|++-|-+
T Consensus 106 ~d~iIalGG-Gsv~D~ak~~Aa~~~rgip~i~IPT 139 (393)
T 1sg6_A 106 DTVVIALGG-GVIGDLTGFVASTYMRGVRYVQVPT 139 (393)
T ss_dssp TCEEEEEES-HHHHHHHHHHHHHGGGCCEEEEEEC
T ss_pred CCEEEEECC-cHHHHHHHHHHHHhcCCCCEEEECC
Confidence 499999999 99999998765 35789988876
No 102
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=51.90 E-value=11 Score=36.99 Aligned_cols=58 Identities=14% Similarity=0.110 Sum_probs=44.6
Q ss_pred CCCCCCccEEEEEcCchhHHHHHHHcCCCCCcEEEEeCC-------------Ccccccc---CCcccHHHHHHHHHcC
Q psy5950 237 DDLTDKIDFIICLGGDGTLLYASLLFQQSVPPVMAFHLG-------------SLGFLTP---FEFENFEDQVTNVLEG 298 (511)
Q Consensus 237 ~~~~~~~DlVIvLGGDGTlL~Aar~~~~~~~PILGINlG-------------~LGFLt~---~~~~~~~~~L~~il~G 298 (511)
.++...+|++|+=||=||++.|+.. ++|++++..+ ..|.+.+ ++.+++.++|.++++.
T Consensus 274 ~~~l~~~d~~v~~~G~~t~~Ea~~~----G~P~v~~p~~~dq~~~a~~~~~~g~g~~~~~~~~~~~~l~~~i~~ll~~ 347 (384)
T 2p6p_A 274 DVVAPTCDLLVHHAGGVSTLTGLSA----GVPQLLIPKGSVLEAPARRVADYGAAIALLPGEDSTEAIADSCQELQAK 347 (384)
T ss_dssp HHHGGGCSEEEECSCTTHHHHHHHT----TCCEEECCCSHHHHHHHHHHHHHTSEEECCTTCCCHHHHHHHHHHHHHC
T ss_pred HHHHhhCCEEEeCCcHHHHHHHHHh----CCCEEEccCcccchHHHHHHHHCCCeEecCcCCCCHHHHHHHHHHHHcC
Confidence 3455679999999999999998865 8899998652 3566654 3567888889888864
No 103
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=51.66 E-value=98 Score=25.60 Aligned_cols=56 Identities=21% Similarity=0.342 Sum_probs=37.9
Q ss_pred CccEEEEE----cCchh-HHHHHHHcCCCCCcEEEEe-------------CCCccccc-cCCcccHHHHHHHHHcC
Q psy5950 242 KIDFIICL----GGDGT-LLYASLLFQQSVPPVMAFH-------------LGSLGFLT-PFEFENFEDQVTNVLEG 298 (511)
Q Consensus 242 ~~DlVIvL----GGDGT-lL~Aar~~~~~~~PILGIN-------------lG~LGFLt-~~~~~~~~~~L~~il~G 298 (511)
.+|+||+= +.||. ++...+.. ...+||+-+. .|-.+||. +++.+++...|.+++.+
T Consensus 47 ~~dliild~~l~~~~g~~~~~~l~~~-~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 121 (155)
T 1qkk_A 47 FAGIVISDIRMPGMDGLALFRKILAL-DPDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEEK 121 (155)
T ss_dssp CCSEEEEESCCSSSCHHHHHHHHHHH-CTTSCEEEEECGGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhh-CCCCCEEEEECCCChHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHH
Confidence 46887762 34553 45555543 2467888763 36778886 88889999999888764
No 104
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=50.79 E-value=24 Score=30.59 Aligned_cols=56 Identities=23% Similarity=0.497 Sum_probs=42.5
Q ss_pred CccEEEE----EcCch-hHHHHHHHcCC-CCCcEEEEeC-------------CCccccc-cCCcccHHHHHHHHHc
Q psy5950 242 KIDFIIC----LGGDG-TLLYASLLFQQ-SVPPVMAFHL-------------GSLGFLT-PFEFENFEDQVTNVLE 297 (511)
Q Consensus 242 ~~DlVIv----LGGDG-TlL~Aar~~~~-~~~PILGINl-------------G~LGFLt-~~~~~~~~~~L~~il~ 297 (511)
.+|+||+ =|-|| .+++..|.... ..+||+-+.. |--+||+ ||+++++.+.|+++++
T Consensus 57 ~~DlillD~~MP~mdG~el~~~ir~~~~~~~ipvI~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~ 132 (134)
T 3to5_A 57 DFDFVVTDWNMPGMQGIDLLKNIRADEELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIFE 132 (134)
T ss_dssp CCSEEEEESCCSSSCHHHHHHHHHHSTTTTTCCEEEEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHCC
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhCCCCCCCeEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 4788776 37788 67777776443 5789987753 6778898 9999999999988764
No 105
>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1
Probab=50.54 E-value=2.6 Score=42.17 Aligned_cols=36 Identities=25% Similarity=0.228 Sum_probs=24.6
Q ss_pred CCccEEEEEcCchh------------HHHHHHHcCCC--CCcEEEEeCCC
Q psy5950 241 DKIDFIICLGGDGT------------LLYASLLFQQS--VPPVMAFHLGS 276 (511)
Q Consensus 241 ~~~DlVIvLGGDGT------------lL~Aar~~~~~--~~PILGINlG~ 276 (511)
+.+|.||.-||-|. ++..++.+... .+|||||-+|.
T Consensus 85 ~~~dglil~GG~~~v~p~~~~~~~~~l~~~~~~~~~~g~~~PiLGIC~G~ 134 (315)
T 1l9x_A 85 KSINGILFPGGSVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGF 134 (315)
T ss_dssp HHSSEEEECCCCCCTTTCHHHHHHHHHHHHHHHHHHTTCCCCEEEETHHH
T ss_pred hcCCEEEEeCCCcccChhhhhHHHHHHHHHHHHHHhcCCCceEEEEChHH
Confidence 35799999999543 45555544222 58999999873
No 106
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=50.37 E-value=9.9 Score=37.95 Aligned_cols=58 Identities=21% Similarity=0.184 Sum_probs=39.8
Q ss_pred CCCCCccEEEEEcCchhHHHHHHHcCCCCCcEEEEeCC-----------------Cccccc---cCCcccHHHHHHHHHc
Q psy5950 238 DLTDKIDFIICLGGDGTLLYASLLFQQSVPPVMAFHLG-----------------SLGFLT---PFEFENFEDQVTNVLE 297 (511)
Q Consensus 238 ~~~~~~DlVIvLGGDGTlL~Aar~~~~~~~PILGINlG-----------------~LGFLt---~~~~~~~~~~L~~il~ 297 (511)
+....+|++|+=+|=+|+..++.. ++|.+-|... ..|.+. +++++++.++|.++++
T Consensus 248 ~~l~~aDlvI~raG~~Tv~E~~a~----G~P~Ilip~p~~~~~~Q~~NA~~l~~~G~a~~l~~~~~~~~~L~~~i~~ll~ 323 (365)
T 3s2u_A 248 AAYAWADLVICRAGALTVSELTAA----GLPAFLVPLPHAIDDHQTRNAEFLVRSGAGRLLPQKSTGAAELAAQLSEVLM 323 (365)
T ss_dssp HHHHHCSEEEECCCHHHHHHHHHH----TCCEEECC-----CCHHHHHHHHHHTTTSEEECCTTTCCHHHHHHHHHHHHH
T ss_pred hhhccceEEEecCCcchHHHHHHh----CCCeEEeccCCCCCcHHHHHHHHHHHCCCEEEeecCCCCHHHHHHHHHHHHC
Confidence 445678999999999999887765 6787654321 124443 3456778888888886
Q ss_pred CC
Q psy5950 298 GH 299 (511)
Q Consensus 298 G~ 299 (511)
..
T Consensus 324 d~ 325 (365)
T 3s2u_A 324 HP 325 (365)
T ss_dssp CT
T ss_pred CH
Confidence 53
No 107
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=50.09 E-value=83 Score=28.06 Aligned_cols=56 Identities=20% Similarity=0.288 Sum_probs=40.3
Q ss_pred CccEEEEE----cCch-hHHHHHHHcCCCCCcEEEEeC-------------CCccccc-cCCcccHHHHHHHHHcCC
Q psy5950 242 KIDFIICL----GGDG-TLLYASLLFQQSVPPVMAFHL-------------GSLGFLT-PFEFENFEDQVTNVLEGH 299 (511)
Q Consensus 242 ~~DlVIvL----GGDG-TlL~Aar~~~~~~~PILGINl-------------G~LGFLt-~~~~~~~~~~L~~il~G~ 299 (511)
.+|+||+= |.|| .++...+.. ..+||+-+.. |-.|||. +++++++...|.+++.|.
T Consensus 48 ~~dlvllD~~l~~~~g~~~~~~l~~~--~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 122 (230)
T 2oqr_A 48 GADIVLLDLMLPGMSGTDVCKQLRAR--SSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRG 122 (230)
T ss_dssp CCSEEEEESSCSSSCHHHHHHHHHHH--CSCSEEEEECCHHHHHHHHHHHHCCSCCCCSSCCHHHHHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHcC--CCCCEEEEeCCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 36777762 4566 355555553 3678887643 6778887 899999999999999875
No 108
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=49.55 E-value=62 Score=28.76 Aligned_cols=58 Identities=21% Similarity=0.277 Sum_probs=40.6
Q ss_pred CCccEEEE---E-cCch-hHHHHHHHcCCCCCcEEEEeC-------------CCccccc-cCCcccHHHHHHHHHcCC
Q psy5950 241 DKIDFIIC---L-GGDG-TLLYASLLFQQSVPPVMAFHL-------------GSLGFLT-PFEFENFEDQVTNVLEGH 299 (511)
Q Consensus 241 ~~~DlVIv---L-GGDG-TlL~Aar~~~~~~~PILGINl-------------G~LGFLt-~~~~~~~~~~L~~il~G~ 299 (511)
..+|+||+ + |.|| .+++..+... ..+||+-+.. |-.|||. +++++++...|..++.+.
T Consensus 42 ~~~dlvllD~~lp~~~g~~~~~~lr~~~-~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 118 (220)
T 1p2f_A 42 EAFHVVVLDVMLPDYSGYEICRMIKETR-PETWVILLTLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLERE 118 (220)
T ss_dssp SCCSEEEEESBCSSSBHHHHHHHHHHHC-TTSEEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CCCcEEEEEcCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHccc
Confidence 45788776 2 4566 3555555443 4678887743 6678886 889999999999988764
No 109
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=49.51 E-value=56 Score=27.61 Aligned_cols=98 Identities=10% Similarity=0.127 Sum_probs=57.6
Q ss_pred ccccCCCCcEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCc
Q psy5950 164 RLTWYKPPLTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKI 243 (511)
Q Consensus 164 ~l~w~~~p~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~ 243 (511)
.|.-.+.+++|+++.-.+=....-...+|-+.+.+. ++.+-++..... . .+...+++
T Consensus 14 ~~~~~~~~kkIlvvC~sG~gTS~ll~~kl~~~~~~~-gi~~~V~~~~~~------------------~----~~~~~~~~ 70 (113)
T 1tvm_A 14 NLYFQGSKRKIIVACGGAVATSTMAAEEIKELCQSH-NIPVELIQCRVN------------------E----IETYMDGV 70 (113)
T ss_dssp CCCCSCSSEEEEEESCSCSSHHHHHHHHHHHHHHHT-TCCEEEEEECTT------------------T----TTTSTTSC
T ss_pred hHhhcccccEEEEECCCCHHHHHHHHHHHHHHHHHc-CCeEEEEEecHH------------------H----HhhccCCC
Confidence 344445678999999766554444567888888764 444433321010 0 01112468
Q ss_pred cEEEEEcCchhHHHHHHHcCCC-CCcEEEEeCCCccccccCCcccHHHHHHHHHc
Q psy5950 244 DFIICLGGDGTLLYASLLFQQS-VPPVMAFHLGSLGFLTPFEFENFEDQVTNVLE 297 (511)
Q Consensus 244 DlVIvLGGDGTlL~Aar~~~~~-~~PILGINlG~LGFLt~~~~~~~~~~L~~il~ 297 (511)
|+||+-- + | -... ++|++-+ ..|++..+.+++.+.+.++++
T Consensus 71 DlIist~-~---l-----~~~~~~ipvi~v----~~~l~~~d~~~i~~~i~~~l~ 112 (113)
T 1tvm_A 71 HLICTTA-R---V-----DRSFGDIPLVHG----MPFVSGVGIEALQNKILTILQ 112 (113)
T ss_dssp SEEEESS-C---C-----CCCSTTCCEECC----HHHHHSSSHHHHHHHHHHHHH
T ss_pred CEEEECC-c---c-----ccccCCCCEEEE----eeccccCCHHHHHHHHHHHHh
Confidence 9777622 1 0 0223 6788643 279998888888888777664
No 110
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=48.23 E-value=48 Score=32.58 Aligned_cols=57 Identities=19% Similarity=0.246 Sum_probs=41.7
Q ss_pred CCCCCccEEEEEcCchhHHHHHHHcCCCCCcEEEEeCC-------------Cccccc---cCCcccHHHHHHHHHcC
Q psy5950 238 DLTDKIDFIICLGGDGTLLYASLLFQQSVPPVMAFHLG-------------SLGFLT---PFEFENFEDQVTNVLEG 298 (511)
Q Consensus 238 ~~~~~~DlVIvLGGDGTlL~Aar~~~~~~~PILGINlG-------------~LGFLt---~~~~~~~~~~L~~il~G 298 (511)
++...+|++|+-||=||++.++.. ++|++.+-.. ..|.+. +++.+++.++|.++++.
T Consensus 309 ~ll~~ad~~v~~~G~~t~~Ea~~~----G~P~v~~p~~~~q~~~a~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~ 381 (415)
T 3rsc_A 309 KVLEQATVCVTHGGMGTLMEALYW----GRPLVVVPQSFDVQPMARRVDQLGLGAVLPGEKADGDTLLAAVGAVAAD 381 (415)
T ss_dssp HHHHHEEEEEESCCHHHHHHHHHT----TCCEEECCCSGGGHHHHHHHHHHTCEEECCGGGCCHHHHHHHHHHHHTC
T ss_pred HHHhhCCEEEECCcHHHHHHHHHh----CCCEEEeCCcchHHHHHHHHHHcCCEEEcccCCCCHHHHHHHHHHHHcC
Confidence 445578999999999999988755 7899986331 345544 24667788888888864
No 111
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=48.07 E-value=59 Score=25.85 Aligned_cols=58 Identities=14% Similarity=0.143 Sum_probs=36.4
Q ss_pred CccEEEE----EcCch-hHHHHHHHcC-CCCCcEEEEeC------------CCccccc-cCCcccHHHHHHHHHcCC
Q psy5950 242 KIDFIIC----LGGDG-TLLYASLLFQ-QSVPPVMAFHL------------GSLGFLT-PFEFENFEDQVTNVLEGH 299 (511)
Q Consensus 242 ~~DlVIv----LGGDG-TlL~Aar~~~-~~~~PILGINl------------G~LGFLt-~~~~~~~~~~L~~il~G~ 299 (511)
.+|+||+ -|.|| .+++..+... ...+||+-+.. |-.+||. +++.+++.+.+.....+.
T Consensus 47 ~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~~ 123 (127)
T 3i42_A 47 GYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAVSGFAKNDLGKEACELFDFYLEKPIDIASLEPILQSIEGHH 123 (127)
T ss_dssp CCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEEECC-CTTCCHHHHHHCSEEEESSCCHHHHHHHHHHHC---
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEEECCcchhHHHHHHHhhHHheeCCCCHHHHHHHHHHhhccC
Confidence 4788877 25566 4566666542 34678887643 3456775 888888888888766543
No 112
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=47.73 E-value=77 Score=26.27 Aligned_cols=56 Identities=21% Similarity=0.281 Sum_probs=37.3
Q ss_pred CccEEEE----EcCch-hHHHHHHHcCCCCCcEEEEeC-------------C-Cccccc-cCCcccHHHHHHHHHcC
Q psy5950 242 KIDFIIC----LGGDG-TLLYASLLFQQSVPPVMAFHL-------------G-SLGFLT-PFEFENFEDQVTNVLEG 298 (511)
Q Consensus 242 ~~DlVIv----LGGDG-TlL~Aar~~~~~~~PILGINl-------------G-~LGFLt-~~~~~~~~~~L~~il~G 298 (511)
.+|+||+ -|+|| .++...+.. ...+||+-+.. | -.+||. +++.+++...|++++++
T Consensus 58 ~~dlvi~D~~l~~~~g~~~~~~l~~~-~~~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~l~~ 133 (153)
T 3hv2_A 58 EVDLVISAAHLPQMDGPTLLARIHQQ-YPSTTRILLTGDPDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQALEH 133 (153)
T ss_dssp CCSEEEEESCCSSSCHHHHHHHHHHH-CTTSEEEEECCCCCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhH-CCCCeEEEEECCCCHHHHHHHHhCCCcceEEeCCCCHHHHHHHHHHHHHH
Confidence 4687776 25566 344555542 24678876543 5 567886 88899999999888764
No 113
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=47.57 E-value=18 Score=35.58 Aligned_cols=58 Identities=17% Similarity=0.257 Sum_probs=41.9
Q ss_pred CCCCCCccEEEEEcCchhHHHHHHHcCCCCCcEEEEeCC-------------CccccccC---CcccHHHHHHHHHcC
Q psy5950 237 DDLTDKIDFIICLGGDGTLLYASLLFQQSVPPVMAFHLG-------------SLGFLTPF---EFENFEDQVTNVLEG 298 (511)
Q Consensus 237 ~~~~~~~DlVIvLGGDGTlL~Aar~~~~~~~PILGINlG-------------~LGFLt~~---~~~~~~~~L~~il~G 298 (511)
.++...+|++|+=||=||++.|+.. ++|++.+..+ ..|.+.+. +.+++.++|.++++.
T Consensus 295 ~~ll~~ad~~v~~gG~~t~~Ea~~~----G~P~v~~p~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~ai~~ll~~ 368 (398)
T 4fzr_A 295 SAIMPACDVVVHHGGHGTTLTCLSE----GVPQVSVPVIAEVWDSARLLHAAGAGVEVPWEQAGVESVLAACARIRDD 368 (398)
T ss_dssp HHHGGGCSEEEECCCHHHHHHHHHT----TCCEEECCCSGGGHHHHHHHHHTTSEEECC-------CHHHHHHHHHHC
T ss_pred HHHHhhCCEEEecCCHHHHHHHHHh----CCCEEecCCchhHHHHHHHHHHcCCEEecCcccCCHHHHHHHHHHHHhC
Confidence 4455679999999999999988865 8899996542 35776543 567888888888864
No 114
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=47.46 E-value=1.1e+02 Score=24.60 Aligned_cols=56 Identities=21% Similarity=0.415 Sum_probs=36.4
Q ss_pred cEEEE----EcCch-hHHHHHH-HcCC---CCCcEEEEe-------------CCCccccc-cCCcccHHHHHHHHHcCC
Q psy5950 244 DFIIC----LGGDG-TLLYASL-LFQQ---SVPPVMAFH-------------LGSLGFLT-PFEFENFEDQVTNVLEGH 299 (511)
Q Consensus 244 DlVIv----LGGDG-TlL~Aar-~~~~---~~~PILGIN-------------lG~LGFLt-~~~~~~~~~~L~~il~G~ 299 (511)
|+||+ -|.|| .+++..+ .... ..+||+-+. .|-.|||. +++.+++...|.+++.+.
T Consensus 52 dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 130 (136)
T 1dcf_A 52 KVVFMDVCMPGVENYQIALRIHEKFTKQRHQRPLLVALSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSDLLEPR 130 (136)
T ss_dssp SEEEEECCSSTTTTTHHHHHHHHHHC-CCSCCCEEEEEESCCSHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHSCC
T ss_pred CEEEEeCCCCCCcHHHHHHHHHHhhhhccCCCceEEEEeCCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhchh
Confidence 77765 25577 3555554 2221 234566442 36678886 899999999999998765
No 115
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=47.44 E-value=1e+02 Score=24.35 Aligned_cols=58 Identities=17% Similarity=0.220 Sum_probs=38.1
Q ss_pred CccEEEE---Ec--Cch-hHHHHHHHcCCCCCcEEEEeCC----------Cc-cccc-cCCcccHHHHHHHHHcCCc
Q psy5950 242 KIDFIIC---LG--GDG-TLLYASLLFQQSVPPVMAFHLG----------SL-GFLT-PFEFENFEDQVTNVLEGHA 300 (511)
Q Consensus 242 ~~DlVIv---LG--GDG-TlL~Aar~~~~~~~PILGINlG----------~L-GFLt-~~~~~~~~~~L~~il~G~~ 300 (511)
.+|+||+ +. .|| .+++..+... ..+||+-+... .. |||. +++.+++...|++++.+..
T Consensus 50 ~~dlvi~d~~l~~~~~g~~~~~~l~~~~-~~~~ii~~s~~~~~~~~~~~~~~~~~l~kP~~~~~l~~~i~~~~~~~~ 125 (132)
T 2rdm_A 50 AIDGVVTDIRFCQPPDGWQVARVAREID-PNMPIVYISGHAALEWASNGVPDSIILEKPFTSAQLITAVSQLLNARE 125 (132)
T ss_dssp CCCEEEEESCCSSSSCHHHHHHHHHHHC-TTCCEEEEESSCCTTHHHHSCTTCEEEESSCCHHHHHHHHHHHHHTTC
T ss_pred CCCEEEEeeeCCCCCCHHHHHHHHHhcC-CCCCEEEEeCCccHHHHHhhcCCcceEeCCCCHHHHHHHHHHHHhcCC
Confidence 5788876 22 466 3555555542 36788876431 11 4775 8889999999999988754
No 116
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=46.78 E-value=85 Score=27.82 Aligned_cols=56 Identities=21% Similarity=0.385 Sum_probs=39.3
Q ss_pred CccEEEEE----cCch-hHHHHHHHcCCCCCcEEEEe-------------CCCccccc-cCCcccHHHHHHHHHcC
Q psy5950 242 KIDFIICL----GGDG-TLLYASLLFQQSVPPVMAFH-------------LGSLGFLT-PFEFENFEDQVTNVLEG 298 (511)
Q Consensus 242 ~~DlVIvL----GGDG-TlL~Aar~~~~~~~PILGIN-------------lG~LGFLt-~~~~~~~~~~L~~il~G 298 (511)
.+|+||+= |.|| .++...+... ..+||+-+. .|-.|||. +++++++...|..++.+
T Consensus 46 ~~dlvllD~~l~~~~g~~~~~~lr~~~-~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 120 (225)
T 1kgs_A 46 PFDVVILDIMLPVHDGWEILKSMRESG-VNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRR 120 (225)
T ss_dssp CCSEEEEESCCSSSCHHHHHHHHHHTT-CCCCEEEEESSCHHHHHHHTCCCCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CCCCEEEEeCCCCHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHhh
Confidence 46877762 4566 3555555432 467888764 36778886 89999999999998876
No 117
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=46.59 E-value=36 Score=29.43 Aligned_cols=89 Identities=9% Similarity=0.014 Sum_probs=56.6
Q ss_pred CCCcEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEE-EcCCccccccccCCCCccccccccccccCCCCCCCCCccEEE
Q psy5950 169 KPPLTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVY-VEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFII 247 (511)
Q Consensus 169 ~~p~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~-ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVI 247 (511)
+.|++|+||.-..++. .....+.++|.+.+. .|| |.++..+- .. +..| ....++.+ +|+++
T Consensus 2 ~~p~siAVVGaS~~~~--~~g~~v~~~L~~~g~-~V~pVnP~~~~i---------~G----~~~y-~sl~dlp~-vDlav 63 (122)
T 3ff4_A 2 NAMKKTLILGATPETN--RYAYLAAERLKSHGH-EFIPVGRKKGEV---------LG----KTII-NERPVIEG-VDTVT 63 (122)
T ss_dssp CCCCCEEEETCCSCTT--SHHHHHHHHHHHHTC-CEEEESSSCSEE---------TT----EECB-CSCCCCTT-CCEEE
T ss_pred CCCCEEEEEccCCCCC--CHHHHHHHHHHHCCC-eEEEECCCCCcC---------CC----eecc-CChHHCCC-CCEEE
Confidence 4589999999766654 445678888986543 443 33332110 00 1122 23466778 99999
Q ss_pred EEcCchhHHHHHHHcCCCCCcEEEEeCC
Q psy5950 248 CLGGDGTLLYASLLFQQSVPPVMAFHLG 275 (511)
Q Consensus 248 vLGGDGTlL~Aar~~~~~~~PILGINlG 275 (511)
+.=.--.+..+.+.+...+++.+=++.|
T Consensus 64 i~~p~~~v~~~v~e~~~~g~k~v~~~~G 91 (122)
T 3ff4_A 64 LYINPQNQLSEYNYILSLKPKRVIFNPG 91 (122)
T ss_dssp ECSCHHHHGGGHHHHHHHCCSEEEECTT
T ss_pred EEeCHHHHHHHHHHHHhcCCCEEEECCC
Confidence 9888888887777766656666656655
No 118
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=46.54 E-value=1.2e+02 Score=24.97 Aligned_cols=56 Identities=20% Similarity=0.182 Sum_probs=37.7
Q ss_pred CccEEEE---E-cCchh-HHHHHHHcCCCCCcEEEEe-------------CC-Cccccc-cCCcccHHHHHHHHHcC
Q psy5950 242 KIDFIIC---L-GGDGT-LLYASLLFQQSVPPVMAFH-------------LG-SLGFLT-PFEFENFEDQVTNVLEG 298 (511)
Q Consensus 242 ~~DlVIv---L-GGDGT-lL~Aar~~~~~~~PILGIN-------------lG-~LGFLt-~~~~~~~~~~L~~il~G 298 (511)
.+|+||+ + +.||- +++..+... ..+||+-+. .| -.|||. +++.+++...|.+++.+
T Consensus 51 ~~dlvi~d~~l~~~~g~~~~~~l~~~~-~~~~ii~ls~~~~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~~~ 126 (154)
T 2rjn_A 51 SVQLVISDMRMPEMGGEVFLEQVAKSY-PDIERVVISGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQL 126 (154)
T ss_dssp CCSEEEEESSCSSSCHHHHHHHHHHHC-TTSEEEEEECGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEecCCCCCCHHHHHHHHHHhC-CCCcEEEEecCCCHHHHHHHHhccchheeeeCCCCHHHHHHHHHHHHHH
Confidence 4788876 2 44663 455555432 367888763 24 567886 88999999999888765
No 119
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=46.42 E-value=74 Score=26.26 Aligned_cols=57 Identities=18% Similarity=0.323 Sum_probs=38.5
Q ss_pred CCccEEEE----EcCch-hHHHHHHHcC-CCCCcEEEEeC-------------CCccccc-cCCcccHHHHHHHHHc
Q psy5950 241 DKIDFIIC----LGGDG-TLLYASLLFQ-QSVPPVMAFHL-------------GSLGFLT-PFEFENFEDQVTNVLE 297 (511)
Q Consensus 241 ~~~DlVIv----LGGDG-TlL~Aar~~~-~~~~PILGINl-------------G~LGFLt-~~~~~~~~~~L~~il~ 297 (511)
..+|+||+ -|.|| .+++..+... ...+||+-+.. |-.+||. +++.+++...|+++..
T Consensus 58 ~~~dliilD~~l~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 134 (152)
T 3heb_A 58 GRAQLVLLDLNLPDMTGIDILKLVKENPHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQLGL 134 (152)
T ss_dssp TCBEEEEECSBCSSSBHHHHHHHHHHSTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCcHHHHHHHHHhcccccCCCEEEEecCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 46788887 35566 4566665531 24678887643 6667876 8888888888888753
No 120
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=46.39 E-value=65 Score=25.99 Aligned_cols=56 Identities=14% Similarity=0.266 Sum_probs=37.4
Q ss_pred CccEEEE---E-cCchh-HHHHHHHcCCCCCcEEEEe-------------CCCccccc-cCCcccHHHHHHHHHcC
Q psy5950 242 KIDFIIC---L-GGDGT-LLYASLLFQQSVPPVMAFH-------------LGSLGFLT-PFEFENFEDQVTNVLEG 298 (511)
Q Consensus 242 ~~DlVIv---L-GGDGT-lL~Aar~~~~~~~PILGIN-------------lG~LGFLt-~~~~~~~~~~L~~il~G 298 (511)
.+|+||+ + |.||. +++..+... ..+||+-+. .|-.|||. +++.+++...|++++.+
T Consensus 47 ~~dlvl~D~~l~~~~g~~~~~~l~~~~-~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~ 121 (132)
T 3crn_A 47 FFNLALFXIKLPDMEGTELLEKAHKLR-PGMKKIMVTGYASLENSVFSLNAGADAYIMKPVNPRDLLEKIKEKLDE 121 (132)
T ss_dssp CCSEEEECSBCSSSBHHHHHHHHHHHC-TTSEEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEecCCCCCchHHHHHHHHhhC-CCCcEEEEeccccHHHHHHHHhccchhhccCCCCHHHHHHHHHHHHhc
Confidence 4677776 2 45664 555555432 367887763 36678886 88888888888887764
No 121
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=45.80 E-value=1e+02 Score=23.91 Aligned_cols=56 Identities=11% Similarity=0.244 Sum_probs=36.1
Q ss_pred CccEEEE---E--cCch-hHHHHHHHcC-CCCCcEEEEe------------CCCccccc-cCCcccHHHHHHHHHc
Q psy5950 242 KIDFIIC---L--GGDG-TLLYASLLFQ-QSVPPVMAFH------------LGSLGFLT-PFEFENFEDQVTNVLE 297 (511)
Q Consensus 242 ~~DlVIv---L--GGDG-TlL~Aar~~~-~~~~PILGIN------------lG~LGFLt-~~~~~~~~~~L~~il~ 297 (511)
.+|+||+ + +.|| .+++..+... ...+||+-+. .|-.+||. +++.+++...|.+++.
T Consensus 49 ~~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 124 (127)
T 2gkg_A 49 RPDLVVLAVDLSAGQNGYLICGKLKKDDDLKNVPIVIIGNPDGFAQHRKLKAHADEYVAKPVDADQLVERAGALIG 124 (127)
T ss_dssp CCSEEEEESBCGGGCBHHHHHHHHHHSTTTTTSCEEEEECGGGHHHHHHSTTCCSEEEESSCCHHHHHHHHHHHHC
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHhcCccccCCCEEEEecCCchhHHHHHHhCcchheeCCCCHHHHHHHHHHHHc
Confidence 3687776 2 3455 2455555532 2467888772 25567776 8888888888888765
No 122
>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}
Probab=45.50 E-value=1.1e+02 Score=27.30 Aligned_cols=37 Identities=19% Similarity=0.144 Sum_probs=27.4
Q ss_pred CCccEEEEEcCc-hh--------HHHHHHHcCCCCCcEEEEeCCCc
Q psy5950 241 DKIDFIICLGGD-GT--------LLYASLLFQQSVPPVMAFHLGSL 277 (511)
Q Consensus 241 ~~~DlVIvLGGD-GT--------lL~Aar~~~~~~~PILGINlG~L 277 (511)
.++|+||+-||. |. ++...+.+.....||.+|-.|..
T Consensus 66 ~~~D~livpGG~~~~~~~~~~~~~~~~l~~~~~~~k~i~aiC~G~~ 111 (190)
T 4e08_A 66 DKFDVVVLPGGLGGSNAMGESSLVGDLLRSQESGGGLIAAICAAPT 111 (190)
T ss_dssp CCCSEEEECCCHHHHHHHHHCHHHHHHHHHHHHTTCEEEEETTTHH
T ss_pred ccCCEEEECCCChHHHHhhhCHHHHHHHHHHHHCCCEEEEECHHHH
Confidence 468999999995 32 34455556667899999999863
No 123
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=44.75 E-value=36 Score=27.81 Aligned_cols=60 Identities=17% Similarity=0.201 Sum_probs=38.6
Q ss_pred CccEEEE----EcCchh-HHHHHHHcC----CCCCcEEEEe----------CCCccccc-cCCcccHHHHHHHHHcCCcE
Q psy5950 242 KIDFIIC----LGGDGT-LLYASLLFQ----QSVPPVMAFH----------LGSLGFLT-PFEFENFEDQVTNVLEGHAA 301 (511)
Q Consensus 242 ~~DlVIv----LGGDGT-lL~Aar~~~----~~~~PILGIN----------lG~LGFLt-~~~~~~~~~~L~~il~G~~~ 301 (511)
.+|+||+ -|.||. +++..+... ...+||+.+. .|-.|||. +++.+++...|.+++.|...
T Consensus 54 ~~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~~~~ii~~s~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~~~~ 133 (140)
T 3c97_A 54 QFDVIIMDIQMPVMDGLEAVSEIRNYERTHNTKRASIIAITADTIDDDRPGAELDEYVSKPLNPNQLRDVVLTCHSEGAE 133 (140)
T ss_dssp CCSEEEECTTCCSSCHHHHHHHHHHHHHHHTCCCCCCEEEESSCCSCCCCCSSCSEEEESSCCHHHHHHHHHHHHC----
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHhhhhhcCCCceEEEEEeCccchhHHHhCChhheEeCCCCHHHHHHHHHHHhCCCCC
Confidence 4688876 255774 555555421 2356787763 34457886 89999999999999987643
No 124
>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Probab=44.30 E-value=10 Score=35.35 Aligned_cols=35 Identities=14% Similarity=0.242 Sum_probs=24.1
Q ss_pred CccEEEEEcC-chhHHH------HHHHcCCCCCcEEEEeCCC
Q psy5950 242 KIDFIICLGG-DGTLLY------ASLLFQQSVPPVMAFHLGS 276 (511)
Q Consensus 242 ~~DlVIvLGG-DGTlL~------Aar~~~~~~~PILGINlG~ 276 (511)
++|.||.-|| .|++-. ..+.+...++|||||-+|.
T Consensus 54 ~~DglIl~GG~p~~~~~~~~~~~l~~~~~~~~~PiLGIC~G~ 95 (212)
T 2a9v_A 54 GLDGLVLSGGAPNIDEELDKLGSVGKYIDDHNYPILGICVGA 95 (212)
T ss_dssp TCSEEEEEEECSCGGGTGGGHHHHHHHHHHCCSCEEEETHHH
T ss_pred CCCEEEECCCCCCCCcccccchhHHHHHHhCCCCEEEEChHH
Confidence 3899999999 565432 1222334579999999873
No 125
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=43.61 E-value=48 Score=28.92 Aligned_cols=55 Identities=20% Similarity=0.329 Sum_probs=36.6
Q ss_pred CccEEEE---E-cCch-hHHHHHHHcCCCCCcEEEEeC-------------CCccccc-cCCcccHHHHHHHHHc
Q psy5950 242 KIDFIIC---L-GGDG-TLLYASLLFQQSVPPVMAFHL-------------GSLGFLT-PFEFENFEDQVTNVLE 297 (511)
Q Consensus 242 ~~DlVIv---L-GGDG-TlL~Aar~~~~~~~PILGINl-------------G~LGFLt-~~~~~~~~~~L~~il~ 297 (511)
.+|+||+ + |+|| .+++..+.. ...+||+-+.. |-.|||. +++++++...|.+++.
T Consensus 51 ~~dlvl~D~~lp~~~g~~~~~~l~~~-~~~~~ii~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~~~ 124 (184)
T 3rqi_A 51 KFEFITVXLHLGNDSGLSLIAPLCDL-QPDARILVLTGYASIATAVQAVKDGADNYLAKPANVESILAALQTNAS 124 (184)
T ss_dssp CCSEEEECSEETTEESHHHHHHHHHH-CTTCEEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHTSTTHH
T ss_pred CCCEEEEeccCCCccHHHHHHHHHhc-CCCCCEEEEeCCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHH
Confidence 4788876 2 5566 456655553 24678887643 6668886 8888888887766554
No 126
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=43.60 E-value=19 Score=36.30 Aligned_cols=58 Identities=21% Similarity=0.325 Sum_probs=44.4
Q ss_pred CCCCCCccEEEEEcCchhHHHHHHHcCCCCCcEEEEeCC-------------Ccccccc---CCcccHHHHHHHHHcC
Q psy5950 237 DDLTDKIDFIICLGGDGTLLYASLLFQQSVPPVMAFHLG-------------SLGFLTP---FEFENFEDQVTNVLEG 298 (511)
Q Consensus 237 ~~~~~~~DlVIvLGGDGTlL~Aar~~~~~~~PILGINlG-------------~LGFLt~---~~~~~~~~~L~~il~G 298 (511)
.++...+|++|+=||=||++.++.. ++|++.+..+ ..|++.+ ++.+++.++|.++++.
T Consensus 330 ~~ll~~ad~~V~~~G~~t~~Ea~~~----G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~ 403 (441)
T 2yjn_A 330 HALLPTCAATVHHGGPGSWHTAAIH----GVPQVILPDGWDTGVRAQRTQEFGAGIALPVPELTPDQLRESVKRVLDD 403 (441)
T ss_dssp HHHGGGCSEEEECCCHHHHHHHHHT----TCCEEECCCSHHHHHHHHHHHHHTSEEECCTTTCCHHHHHHHHHHHHHC
T ss_pred HHHHhhCCEEEECCCHHHHHHHHHh----CCCEEEeCCcccHHHHHHHHHHcCCEEEcccccCCHHHHHHHHHHHhcC
Confidence 3455789999999999999998865 8899998542 3466544 4667888888888764
No 127
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=42.91 E-value=97 Score=25.21 Aligned_cols=55 Identities=27% Similarity=0.399 Sum_probs=37.0
Q ss_pred CccEEEE---E-cCchh-HHHHHHHcCCCCCcEEEEe-------------CCCccccc-cCCcccHHHHHHHHHcC
Q psy5950 242 KIDFIIC---L-GGDGT-LLYASLLFQQSVPPVMAFH-------------LGSLGFLT-PFEFENFEDQVTNVLEG 298 (511)
Q Consensus 242 ~~DlVIv---L-GGDGT-lL~Aar~~~~~~~PILGIN-------------lG~LGFLt-~~~~~~~~~~L~~il~G 298 (511)
.+|+||+ + |.||. +++..+... .+||+-+. .|-.|||. +++++++...|.+++.+
T Consensus 48 ~~dlvllD~~l~~~~g~~l~~~l~~~~--~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~ 121 (136)
T 2qzj_A 48 KYDLIFLEIILSDGDGWTLCKKIRNVT--TCPIVYMTYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAILRR 121 (136)
T ss_dssp CCSEEEEESEETTEEHHHHHHHHHTTC--CCCEEEEESCCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHccCC--CCCEEEEEcCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHH
Confidence 4677775 3 44663 455554432 67888763 26678886 88899999888887754
No 128
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=42.61 E-value=49 Score=26.51 Aligned_cols=59 Identities=20% Similarity=0.228 Sum_probs=41.6
Q ss_pred CccEEEE----EcCch-hHHHHHHHcCCCCCcEEEEe-------------CCCccccc-cCCcccHHHHHHHHHcCCcE
Q psy5950 242 KIDFIIC----LGGDG-TLLYASLLFQQSVPPVMAFH-------------LGSLGFLT-PFEFENFEDQVTNVLEGHAA 301 (511)
Q Consensus 242 ~~DlVIv----LGGDG-TlL~Aar~~~~~~~PILGIN-------------lG~LGFLt-~~~~~~~~~~L~~il~G~~~ 301 (511)
.+|+||+ -+.|| .+++..+... ..+||+-+. .|-.|||. +++.+++...|+++++|...
T Consensus 46 ~~dlii~d~~l~~~~g~~~~~~l~~~~-~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~ 123 (134)
T 3f6c_A 46 KPDIVIIDVDIPGVNGIQVLETLRKRQ-YSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 123 (134)
T ss_dssp CCSEEEEETTCSSSCHHHHHHHHHHTT-CCSEEEEEECC---CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHHTTCCB
T ss_pred CCCEEEEecCCCCCChHHHHHHHHhcC-CCCeEEEEeCCCChHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCCEE
Confidence 4688777 24566 4566665532 367887653 36678886 89999999999999988643
No 129
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=42.17 E-value=26 Score=33.79 Aligned_cols=111 Identities=16% Similarity=0.175 Sum_probs=60.3
Q ss_pred CCcEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEE
Q psy5950 170 PPLTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICL 249 (511)
Q Consensus 170 ~p~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvL 249 (511)
..++|+|++.+...........+.+.+.+ .++++.... .... ..+... ...+..++|.+.+
T Consensus 139 ~~k~vgvi~~~~~~~s~~~~~~~~~~~~~-~g~~~v~~~-~~~~---------~~~~~~-------~~~l~~~~d~i~~- 199 (302)
T 3lkv_A 139 NVKSIGVVYNPGEANAVSLMELLKLSAAK-HGIKLVEAT-ALKS---------ADVQSA-------TQAIAEKSDVIYA- 199 (302)
T ss_dssp TCCEEEEEECTTCHHHHHHHHHHHHHHHH-TTCEEEEEE-CSSG---------GGHHHH-------HHHHHTTCSEEEE-
T ss_pred CCCEEEEEeCCCcccHHHHHHHHHHHHHH-cCCEEEEEe-cCCh---------HHHHHH-------HHhccCCeeEEEE-
Confidence 46899999987666555555666666654 455543221 1110 001111 1122346777654
Q ss_pred cCchhHHHHHHHc----CCCCCcEEEEeCCC--ccccccC--Cccc----HHHHHHHHHcCC
Q psy5950 250 GGDGTLLYASLLF----QQSVPPVMAFHLGS--LGFLTPF--EFEN----FEDQVTNVLEGH 299 (511)
Q Consensus 250 GGDGTlL~Aar~~----~~~~~PILGINlG~--LGFLt~~--~~~~----~~~~L~~il~G~ 299 (511)
..|+|++.+...+ ....+|++|..... -|.|..+ +..+ .-+...+|++|+
T Consensus 200 ~~d~~~~~~~~~i~~~~~~~~iPv~~~~~~~v~~G~l~~~~~~~~~~G~~aa~~a~~IL~G~ 261 (302)
T 3lkv_A 200 LIDNTVASAIEGMIVAANQAKTPVFGAATSYVERGAIASLGFDYYQIGVQTADYVAAILEGK 261 (302)
T ss_dssp CSCHHHHHTHHHHHHHHHHTTCCEEESSHHHHHTTCSEEEECCHHHHHHHHHHHHHHHHTTC
T ss_pred eCCcchhhHHHHHHHHHhhcCCceeecccccccCCceEEEecCHHHHHHHHHHHHHHHHCcC
Confidence 5688988766543 24689999965411 1333322 2222 234567889985
No 130
>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei}
Probab=41.23 E-value=17 Score=35.38 Aligned_cols=36 Identities=25% Similarity=0.197 Sum_probs=25.2
Q ss_pred CCccEEEEEcCchh-----HHHHHHHcCCCCCcEEEEeCCC
Q psy5950 241 DKIDFIICLGGDGT-----LLYASLLFQQSVPPVMAFHLGS 276 (511)
Q Consensus 241 ~~~DlVIvLGGDGT-----lL~Aar~~~~~~~PILGINlG~ 276 (511)
..+|.||.-||=|. .+.+.+.+...++|||||-+|.
T Consensus 66 ~~~dgiil~GG~~~~~~~~~~~~i~~~~~~~~PilGIC~G~ 106 (273)
T 2w7t_A 66 LGCDGIFVPGGFGNRGVDGKCAAAQVARMNNIPYFGVXLGM 106 (273)
T ss_dssp HTCSEEEECCCCTTTTHHHHHHHHHHHHHHTCCEEEETHHH
T ss_pred hhCCEEEecCCCCCcCchhHHHHHHHHHHCCCcEEEECcCH
Confidence 35799999998653 3344554444578999999873
No 131
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=41.14 E-value=69 Score=26.52 Aligned_cols=55 Identities=15% Similarity=0.335 Sum_probs=38.0
Q ss_pred ccEEEE----EcCch-hHHHHHHHcCCCCCcEEEEeC-------------C-Cccccc-cCCcccHHHHHHHHHcC
Q psy5950 243 IDFIIC----LGGDG-TLLYASLLFQQSVPPVMAFHL-------------G-SLGFLT-PFEFENFEDQVTNVLEG 298 (511)
Q Consensus 243 ~DlVIv----LGGDG-TlL~Aar~~~~~~~PILGINl-------------G-~LGFLt-~~~~~~~~~~L~~il~G 298 (511)
+|+||+ -|+|| .+++..+... ..+||+-+.. | -.+||. +++.+++...|.+++++
T Consensus 49 ~dlvi~D~~l~~~~g~~~~~~l~~~~-~~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~l~~ 123 (151)
T 3kcn_A 49 FSVIMVDMRMPGMEGTEVIQKARLIS-PNSVYLMLTGNQDLTTAMEAVNEGQVFRFLNKPCQMSDIKAAINAGIKQ 123 (151)
T ss_dssp CSEEEEESCCSSSCHHHHHHHHHHHC-SSCEEEEEECGGGHHHHHHHHHHTCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHhcC-CCcEEEEEECCCCHHHHHHHHHcCCeeEEEcCCCCHHHHHHHHHHHHHH
Confidence 588877 25666 3555555433 4678876642 5 567886 88999999999888764
No 132
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=40.77 E-value=1.2e+02 Score=24.68 Aligned_cols=57 Identities=23% Similarity=0.282 Sum_probs=37.3
Q ss_pred CccEEEEE----cCchh-HHHHHHHc-CCCCCcEEEEeC-------------CCccccc-cCCcccHHHHHHHHHcC
Q psy5950 242 KIDFIICL----GGDGT-LLYASLLF-QQSVPPVMAFHL-------------GSLGFLT-PFEFENFEDQVTNVLEG 298 (511)
Q Consensus 242 ~~DlVIvL----GGDGT-lL~Aar~~-~~~~~PILGINl-------------G~LGFLt-~~~~~~~~~~L~~il~G 298 (511)
.+|+||+= +.||- +++..+.. ....+||+-+.. |-.+||. +++.+++...|.+++..
T Consensus 52 ~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~ 128 (147)
T 2zay_A 52 HPHLIITEANMPKISGMDLFNSLKKNPQTASIPVIALSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLKL 128 (147)
T ss_dssp CCSEEEEESCCSSSCHHHHHHHHHTSTTTTTSCEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHcCcccCCCCEEEEeCCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHH
Confidence 46777762 44552 44444442 224678887642 6678886 88889999999888764
No 133
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=40.06 E-value=51 Score=26.86 Aligned_cols=56 Identities=20% Similarity=0.233 Sum_probs=38.3
Q ss_pred CccEEEE----EcCchh-HHHHHHHcCCCCCcEEEEeC-------------CCccccc-cCCcccHHHHHHHHHc
Q psy5950 242 KIDFIIC----LGGDGT-LLYASLLFQQSVPPVMAFHL-------------GSLGFLT-PFEFENFEDQVTNVLE 297 (511)
Q Consensus 242 ~~DlVIv----LGGDGT-lL~Aar~~~~~~~PILGINl-------------G~LGFLt-~~~~~~~~~~L~~il~ 297 (511)
.+|+||+ =|.||- +++..+......+||+-+.. |-.|||. |++.+++...|++++.
T Consensus 52 ~~dlvllD~~mp~~~G~~~~~~lr~~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~ 126 (133)
T 2r25_B 52 NYNMIFMDVQMPKVDGLLSTKMIRRDLGYTSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCA 126 (133)
T ss_dssp CCSEEEECSCCSSSCHHHHHHHHHHHSCCCSCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHCT
T ss_pred CCCEEEEeCCCCCCChHHHHHHHHhhcCCCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 4688876 256774 55555542234578887632 6678886 8899999999888765
No 134
>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*
Probab=40.05 E-value=59 Score=36.35 Aligned_cols=92 Identities=20% Similarity=0.082 Sum_probs=56.7
Q ss_pred cCCCCcEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEE
Q psy5950 167 WYKPPLTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFI 246 (511)
Q Consensus 167 w~~~p~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlV 246 (511)
|.-.-++|+|+.-..+.--...+..+++.|++.+...++|...... .+. .+|. +.-...+|.|
T Consensus 525 ~~l~g~kVaIL~a~~dGfe~~E~~~~~~~L~~aG~~V~vVs~~~g~-----------~vD---~t~~---~~~s~~fDAV 587 (688)
T 2iuf_A 525 AKLDGLKVGLLASVNKPASIAQGAKLQVALSSVGVDVVVVAERXAN-----------NVD---ETYS---ASDAVQFDAV 587 (688)
T ss_dssp SCCTTCEEEEECCTTCHHHHHHHHHHHHHHGGGTCEEEEEESSCCT-----------TCC---EEST---TCCGGGCSEE
T ss_pred CCCCCCEEEEEecCCCCCcHHHHHHHHHHHHHCCCEEEEEeccCCc-----------ccc---cchh---cCCccccCeE
Confidence 3334578999985324434455678899998765444444443221 000 1111 1113568999
Q ss_pred EEEcC-------------------------chhHHHHHHHcCCCCCcEEEEeCC
Q psy5950 247 ICLGG-------------------------DGTLLYASLLFQQSVPPVMAFHLG 275 (511)
Q Consensus 247 IvLGG-------------------------DGTlL~Aar~~~~~~~PILGINlG 275 (511)
|+-|| ||.++..++.+...++||-+|-.|
T Consensus 588 vlPGG~~g~~~~~~~~~~~~~~~~~~~L~~~~~~~~~v~~~~~~gKpIaAIc~a 641 (688)
T 2iuf_A 588 VVADGAEGLFGADSFTVEPSAGSGASTLYPAGRPLNILLDAFRFGKTVGALGSG 641 (688)
T ss_dssp EECTTCGGGCCTTTTTCCCCTTSCCCSSSCTTHHHHHHHHHHHHTCEEEEEGGG
T ss_pred EecCCCcccccccccccccccccchhhcccChHHHHHHHHHHHcCCEEEEECch
Confidence 99999 334777777777788999998765
No 135
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*
Probab=39.95 E-value=30 Score=38.15 Aligned_cols=35 Identities=20% Similarity=0.183 Sum_probs=24.8
Q ss_pred CccEEEEEcCchhH-----------HHHHHHcCCCCCcEEEEeCCC
Q psy5950 242 KIDFIICLGGDGTL-----------LYASLLFQQSVPPVMAFHLGS 276 (511)
Q Consensus 242 ~~DlVIvLGGDGTl-----------L~Aar~~~~~~~PILGINlG~ 276 (511)
++|.||+.||-|.. ....+.+...++|||||-+|.
T Consensus 486 ~~DgIIlsGGPg~p~d~~~p~i~~~~~lI~~a~~~~iPiLGIClG~ 531 (645)
T 3r75_A 486 RYDVVVMGPGPGDPSDAGDPRIARLYAWLRHLIDEGKPFMAVCLSH 531 (645)
T ss_dssp GCSEEEECCCSSCTTCTTSHHHHHHHHHHHHHHHHTCCEEEETHHH
T ss_pred CCCEEEECCCCCChhhhhhhhHHHHHHHHHHHHHCCCCEEEECHHH
Confidence 57999999997643 333444334579999999883
No 136
>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*
Probab=39.90 E-value=31 Score=35.68 Aligned_cols=35 Identities=29% Similarity=0.316 Sum_probs=27.1
Q ss_pred CccEEEEEcCch------hHHHHHHHcCCCCCcEEEEeCCC
Q psy5950 242 KIDFIICLGGDG------TLLYASLLFQQSVPPVMAFHLGS 276 (511)
Q Consensus 242 ~~DlVIvLGGDG------TlL~Aar~~~~~~~PILGINlG~ 276 (511)
++|.||.-||-| ..+...+.+...++|||||-+|+
T Consensus 231 ~~DGliLsGGPgdp~~~~~~~~~Ir~~~~~~~PILGIClG~ 271 (379)
T 1a9x_B 231 NPDGIFLSNGPGDPAPCDYAITAIQKFLETDIPVFGICLGH 271 (379)
T ss_dssp CCSEEEECCCSBCSTTCHHHHHHHHHHTTSCCCEEEETHHH
T ss_pred CCCEEEEeCCCCChHHHHHHHHHHHHHHHcCCCEEEECchH
Confidence 579999999843 35666677766789999999884
No 137
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=39.87 E-value=55 Score=26.48 Aligned_cols=59 Identities=14% Similarity=0.146 Sum_probs=39.1
Q ss_pred CccEEEE---E-cCchh-HHHHHHHcCCCCCcEEEEe-------------CCCccccc-cCCcccHHHHHHHHHcCCcE
Q psy5950 242 KIDFIIC---L-GGDGT-LLYASLLFQQSVPPVMAFH-------------LGSLGFLT-PFEFENFEDQVTNVLEGHAA 301 (511)
Q Consensus 242 ~~DlVIv---L-GGDGT-lL~Aar~~~~~~~PILGIN-------------lG~LGFLt-~~~~~~~~~~L~~il~G~~~ 301 (511)
.+|+||+ + |.||. +++..+.. ...+||+-+. .|-.|||. +++++++...|++++.+...
T Consensus 49 ~~dlvilD~~lp~~~g~~~~~~l~~~-~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~~ 126 (133)
T 3b2n_A 49 NPNVVILDIEMPGMTGLEVLAEIRKK-HLNIKVIIVTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNNGEKE 126 (133)
T ss_dssp CCSEEEECSSCSSSCHHHHHHHHHHT-TCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHC----
T ss_pred CCCEEEEecCCCCCCHHHHHHHHHHH-CCCCcEEEEecCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcCCCc
Confidence 3677776 2 55663 55655553 2467888763 36678886 89999999999999887543
No 138
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=39.71 E-value=45 Score=36.27 Aligned_cols=36 Identities=22% Similarity=0.303 Sum_probs=27.0
Q ss_pred CCCccEEEEEcCchh-----HHHHHHHcCCCCCcEEEEeCC
Q psy5950 240 TDKIDFIICLGGDGT-----LLYASLLFQQSVPPVMAFHLG 275 (511)
Q Consensus 240 ~~~~DlVIvLGGDGT-----lL~Aar~~~~~~~PILGINlG 275 (511)
...+|.||+-||=|. ++.+++.+...++|+|||-+|
T Consensus 348 L~~~DgIIlpGG~G~~~~~g~i~~ir~a~~~~~PiLGIClG 388 (535)
T 3nva_A 348 LGNVNGIIVLPGFGSRGAEGKIKAIKYAREHNIPFLGICFG 388 (535)
T ss_dssp TTSCSEEEECCCCSSTTHHHHHHHHHHHHHHTCCEEEETHH
T ss_pred ccCCCEEEECCCCCCccHHHHHHHHHHHHHcCCcEEEECcc
Confidence 457899999998663 345555555568999999987
No 139
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=39.62 E-value=29 Score=34.48 Aligned_cols=57 Identities=9% Similarity=0.122 Sum_probs=44.0
Q ss_pred CCCCCccEEEEEcCchhHHHHHHHcCCCCCcEEEEeC-------------CCcccccc---CCcccHHHHHHHHHcC
Q psy5950 238 DLTDKIDFIICLGGDGTLLYASLLFQQSVPPVMAFHL-------------GSLGFLTP---FEFENFEDQVTNVLEG 298 (511)
Q Consensus 238 ~~~~~~DlVIvLGGDGTlL~Aar~~~~~~~PILGINl-------------G~LGFLt~---~~~~~~~~~L~~il~G 298 (511)
++...+|++|+-||=+|++.|+.. ++|++.+.. +..|++.+ ++.+++.++|.++++.
T Consensus 295 ~~l~~ad~~v~~~G~~t~~Ea~~~----G~P~i~~p~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~i~~ll~~ 367 (430)
T 2iyf_A 295 AILRQADLFVTHAGAGGSQEGLAT----ATPMIAVPQAVDQFGNADMLQGLGVARKLATEEATADLLRETALALVDD 367 (430)
T ss_dssp HHHTTCSEEEECCCHHHHHHHHHT----TCCEEECCCSHHHHHHHHHHHHTTSEEECCCC-CCHHHHHHHHHHHHHC
T ss_pred HHhhccCEEEECCCccHHHHHHHh----CCCEEECCCccchHHHHHHHHHcCCEEEcCCCCCCHHHHHHHHHHHHcC
Confidence 455678999999999999988865 889998754 23577754 3567888899988864
No 140
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=39.59 E-value=1.7e+02 Score=25.50 Aligned_cols=56 Identities=21% Similarity=0.303 Sum_probs=38.7
Q ss_pred CccEEEEE----cCchh-HHHHHHHcCCCCCcEEEEeC-------------CCccccc-cCCcccHHHHHHHHHcC
Q psy5950 242 KIDFIICL----GGDGT-LLYASLLFQQSVPPVMAFHL-------------GSLGFLT-PFEFENFEDQVTNVLEG 298 (511)
Q Consensus 242 ~~DlVIvL----GGDGT-lL~Aar~~~~~~~PILGINl-------------G~LGFLt-~~~~~~~~~~L~~il~G 298 (511)
.+|+||+= |.||. ++...+.. ...+||+-+.. |-.|||. +++++++...|.+++.+
T Consensus 48 ~~dlvl~D~~lp~~~g~~~~~~l~~~-~~~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 122 (208)
T 1yio_A 48 QHGCLVLDMRMPGMSGIELQEQLTAI-SDGIPIVFITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQL 122 (208)
T ss_dssp SCEEEEEESCCSSSCHHHHHHHHHHT-TCCCCEEEEESCTTSCCCHHHHHTTEEEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-CCCCCEEEEeCCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHhh
Confidence 47887762 56773 45555543 24678887642 5568886 88999999999888765
No 141
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=39.58 E-value=1.3e+02 Score=26.82 Aligned_cols=57 Identities=23% Similarity=0.329 Sum_probs=39.3
Q ss_pred CccEEEEE----cCch-hHHHHHHHcCCCCCcEEEEe-------------CCCccccc-cCCcccHHHHHHHHHcCC
Q psy5950 242 KIDFIICL----GGDG-TLLYASLLFQQSVPPVMAFH-------------LGSLGFLT-PFEFENFEDQVTNVLEGH 299 (511)
Q Consensus 242 ~~DlVIvL----GGDG-TlL~Aar~~~~~~~PILGIN-------------lG~LGFLt-~~~~~~~~~~L~~il~G~ 299 (511)
.+|+||+= |.|| .++...+... ..+||+-+. .|-.|||. +++++++...|..++.+.
T Consensus 51 ~~dlvllD~~l~~~~g~~~~~~l~~~~-~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 126 (233)
T 1ys7_A 51 RPDAIVLDINMPVLDGVSVVTALRAMD-NDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRR 126 (233)
T ss_dssp CCSEEEEESSCSSSCHHHHHHHHHHTT-CCCCEEEEECCCTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CCCCEEEEEcCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 46877762 4566 3555555432 467888764 36668886 899999999999988763
No 142
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=39.44 E-value=87 Score=27.50 Aligned_cols=55 Identities=18% Similarity=0.375 Sum_probs=36.7
Q ss_pred CccEEEEE----cCch-hHHHHHHHcCCCCCcEEEEe-------------CCCccccc-cCCcccHHHHHHHHHcC
Q psy5950 242 KIDFIICL----GGDG-TLLYASLLFQQSVPPVMAFH-------------LGSLGFLT-PFEFENFEDQVTNVLEG 298 (511)
Q Consensus 242 ~~DlVIvL----GGDG-TlL~Aar~~~~~~~PILGIN-------------lG~LGFLt-~~~~~~~~~~L~~il~G 298 (511)
.+|+||+= |.|| .+++..+... ..||+-+. .|-.+||. +++++++...|..++.+
T Consensus 58 ~~dlvi~D~~~p~~~g~~~~~~l~~~~--~~pii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~ 131 (205)
T 1s8n_A 58 KPDLVIMDVKMPRRDGIDAASEIASKR--IAPIVVLTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVSR 131 (205)
T ss_dssp CCSEEEEESSCSSSCHHHHHHHHHHTT--CSCEEEEEEGGGHHHHHTTGGGSCEEEEEESCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCChHHHHHHHHhcC--CCCEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHH
Confidence 36777762 4566 3455555433 34777652 36778887 89999999999888764
No 143
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=39.41 E-value=1.4e+02 Score=23.58 Aligned_cols=57 Identities=19% Similarity=0.218 Sum_probs=37.6
Q ss_pred CCccEEEE---E-cCch-hHHHHHHHcCC-CCCcEEEEeC-------------CCccccc-cCCcccHHHHHHHHHc
Q psy5950 241 DKIDFIIC---L-GGDG-TLLYASLLFQQ-SVPPVMAFHL-------------GSLGFLT-PFEFENFEDQVTNVLE 297 (511)
Q Consensus 241 ~~~DlVIv---L-GGDG-TlL~Aar~~~~-~~~PILGINl-------------G~LGFLt-~~~~~~~~~~L~~il~ 297 (511)
..+|+||+ + +.|| .+++..+.... ..+||+-+.. |-.|||. +++.+++...|.++++
T Consensus 54 ~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~ 130 (140)
T 1k68_A 54 SRPDLILLXLNLPKKDGREVLAEIKSDPTLKRIPVVVLSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIEE 130 (140)
T ss_dssp CCCSEEEECSSCSSSCHHHHHHHHHHSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEecCCCcccHHHHHHHHHcCcccccccEEEEecCCcHHHHHHHHHhchhheecCCCCHHHHHHHHHHHHH
Confidence 35788876 2 4455 35555555332 4678887642 5667876 8888888888888765
No 144
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=38.91 E-value=55 Score=27.10 Aligned_cols=61 Identities=20% Similarity=0.247 Sum_probs=40.2
Q ss_pred CccEEEE----EcCch-hHHHHHHHcCCCCCcEEEEeC-------------CCccccc-cCCcccHHHHHHHHHcCCcEE
Q psy5950 242 KIDFIIC----LGGDG-TLLYASLLFQQSVPPVMAFHL-------------GSLGFLT-PFEFENFEDQVTNVLEGHAAL 302 (511)
Q Consensus 242 ~~DlVIv----LGGDG-TlL~Aar~~~~~~~PILGINl-------------G~LGFLt-~~~~~~~~~~L~~il~G~~~i 302 (511)
.+|+||+ -|+|| .+++..+.. ...+||+-+.. |-.|||. +++.+++...|.+++.|.-.+
T Consensus 61 ~~dlii~d~~l~~~~g~~~~~~l~~~-~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~~~ 139 (152)
T 3eul_A 61 LPDVALLDYRMPGMDGAQVAAAVRSY-ELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKGRDVV 139 (152)
T ss_dssp CCSEEEEETTCSSSCHHHHHHHHHHT-TCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHCC---
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-CCCCeEEEEEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHcCCeee
Confidence 4687776 24455 455555543 24567876543 6778886 889999999999999986544
Q ss_pred E
Q psy5950 303 T 303 (511)
Q Consensus 303 e 303 (511)
.
T Consensus 140 ~ 140 (152)
T 3eul_A 140 A 140 (152)
T ss_dssp -
T ss_pred C
Confidence 3
No 145
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=38.53 E-value=30 Score=34.39 Aligned_cols=57 Identities=25% Similarity=0.260 Sum_probs=43.2
Q ss_pred CCCCCccEEEEEcCchhHHHHHHHcCCCCCcEEEEeCC-------------Ccccccc---CCcccHHHHHHHHHcC
Q psy5950 238 DLTDKIDFIICLGGDGTLLYASLLFQQSVPPVMAFHLG-------------SLGFLTP---FEFENFEDQVTNVLEG 298 (511)
Q Consensus 238 ~~~~~~DlVIvLGGDGTlL~Aar~~~~~~~PILGINlG-------------~LGFLt~---~~~~~~~~~L~~il~G 298 (511)
++...+|++|+-||=||++.++.. ++|++.+... ..|...+ ++.+++.++|+++++.
T Consensus 317 ~~l~~~d~~v~~~G~~t~~Ea~~~----G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~ 389 (424)
T 2iya_A 317 DILTKASAFITHAGMGSTMEALSN----AVPMVAVPQIAEQTMNAERIVELGLGRHIPRDQVTAEKLREAVLAVASD 389 (424)
T ss_dssp HHHTTCSEEEECCCHHHHHHHHHT----TCCEEECCCSHHHHHHHHHHHHTTSEEECCGGGCCHHHHHHHHHHHHHC
T ss_pred HHHhhCCEEEECCchhHHHHHHHc----CCCEEEecCccchHHHHHHHHHCCCEEEcCcCCCCHHHHHHHHHHHHcC
Confidence 455678999999999999998865 8899998542 3455543 4667888888888864
No 146
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=36.62 E-value=31 Score=34.30 Aligned_cols=55 Identities=22% Similarity=0.286 Sum_probs=42.3
Q ss_pred CCCCCCccEEEEEcCchhHHHHHHHcCCCCCcEEEEeCC-------------Ccccccc---CCcccHHHHHHHH
Q psy5950 237 DDLTDKIDFIICLGGDGTLLYASLLFQQSVPPVMAFHLG-------------SLGFLTP---FEFENFEDQVTNV 295 (511)
Q Consensus 237 ~~~~~~~DlVIvLGGDGTlL~Aar~~~~~~~PILGINlG-------------~LGFLt~---~~~~~~~~~L~~i 295 (511)
.++...+|++|+=||=||++.|+.. ++|++.+..+ ..|.+.+ ++.+++.++|+++
T Consensus 297 ~~ll~~~d~~v~~~G~~t~~Ea~~~----G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~l 367 (416)
T 1rrv_A 297 QALFRRVAAVIHHGSAGTEHVATRA----GVPQLVIPRNTDQPYFAGRVAALGIGVAHDGPTPTFESLSAALTTV 367 (416)
T ss_dssp HHHGGGSSEEEECCCHHHHHHHHHH----TCCEEECCCSBTHHHHHHHHHHHTSEEECSSSCCCHHHHHHHHHHH
T ss_pred HHHhccCCEEEecCChhHHHHHHHc----CCCEEEccCCCCcHHHHHHHHHCCCccCCCCCCCCHHHHHHHHHHh
Confidence 4455789999999999999999876 8899997542 2455443 4667888888888
No 147
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=36.58 E-value=8.1 Score=33.38 Aligned_cols=52 Identities=17% Similarity=0.214 Sum_probs=35.5
Q ss_pred CccEEEE----EcCchh-HHHHHHHcCCCCCcEEEEe----------CCCccccc-cCCcccHHHHHHHHH
Q psy5950 242 KIDFIIC----LGGDGT-LLYASLLFQQSVPPVMAFH----------LGSLGFLT-PFEFENFEDQVTNVL 296 (511)
Q Consensus 242 ~~DlVIv----LGGDGT-lL~Aar~~~~~~~PILGIN----------lG~LGFLt-~~~~~~~~~~L~~il 296 (511)
.+|+||+ =|.||- +++..+ ..++||+-+. .|..|||+ ||+++++...|.++.
T Consensus 53 ~~DlvllDi~mP~~~G~el~~~lr---~~~ipvI~lTa~~~~~~~~~~g~~~yl~KP~~~~~L~~~l~~~~ 120 (123)
T 2lpm_A 53 QFDIAIIDVNLDGEPSYPVADILA---ERNVPFIFATGYGSKGLDTRYSNIPLLTKPFLDSELEAVLVQIS 120 (123)
T ss_dssp CSSEEEECSSSSSCCSHHHHHHHH---HTCCSSCCBCTTCTTSCCSSSCSCSCBCSSSSHHHHHHHHSTTC
T ss_pred CCCEEEEecCCCCCCHHHHHHHHH---cCCCCEEEEecCccHHHHHhCCCCcEEECCCCHHHHHHHHHHHH
Confidence 5788776 377873 334333 3467876542 37788998 999999888887654
No 148
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=36.13 E-value=18 Score=32.69 Aligned_cols=35 Identities=23% Similarity=0.295 Sum_probs=26.5
Q ss_pred CccEEEEEcC-----chhHHHHHHHcCCCCCcEEEEeCCC
Q psy5950 242 KIDFIICLGG-----DGTLLYASLLFQQSVPPVMAFHLGS 276 (511)
Q Consensus 242 ~~DlVIvLGG-----DGTlL~Aar~~~~~~~PILGINlG~ 276 (511)
++|.+|.-|| +|.++...+.+...++|||||-.|.
T Consensus 43 ~~dglil~Gg~~~~~~~~~~~~i~~~~~~~~PilGIC~G~ 82 (189)
T 1wl8_A 43 NPKGIIFSGGPSLENTGNCEKVLEHYDEFNVPILGICLGH 82 (189)
T ss_dssp CCSEEEECCCSCTTCCTTHHHHHHTGGGTCSCEEEETHHH
T ss_pred CCCEEEECCCCChhhhhhHHHHHHHHhhCCCeEEEEcHHH
Confidence 5788888888 3556677776655689999999873
No 149
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=35.77 E-value=1.5e+02 Score=27.46 Aligned_cols=55 Identities=22% Similarity=0.293 Sum_probs=37.7
Q ss_pred CccEEEE----EcCch-hHHHHHHHcCCCCCcEEEEeC-------------CCccccc-cCCcccHHHHHHHHHc
Q psy5950 242 KIDFIIC----LGGDG-TLLYASLLFQQSVPPVMAFHL-------------GSLGFLT-PFEFENFEDQVTNVLE 297 (511)
Q Consensus 242 ~~DlVIv----LGGDG-TlL~Aar~~~~~~~PILGINl-------------G~LGFLt-~~~~~~~~~~L~~il~ 297 (511)
.+|+||+ =+.|| .+++..+... ..+||+.+.. |-.+||. +++.+++...|.+++.
T Consensus 173 ~~dlvl~D~~mp~~~G~~l~~~ir~~~-~~~piI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 246 (254)
T 2ayx_A 173 HIDIVLSDVNMPNMDGYRLTQRIRQLG-LTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYAE 246 (254)
T ss_dssp CCSEEEEEESSCSSCCHHHHHHHHHHH-CCSCEEEEESSTTSHHHHHHHHCCCEEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcC-CCCcEEEEECCCCHHHHHHHHHcCCceEEECCCCHHHHHHHHHHHHH
Confidence 4688876 25577 3556565543 3679998743 5667886 8888888888877653
No 150
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=35.63 E-value=1.7e+02 Score=23.54 Aligned_cols=58 Identities=16% Similarity=0.132 Sum_probs=39.1
Q ss_pred CccEEEE----EcCchh-HHHHHHHcC-CCCCcEEEEeC-------------CCccccc-cCCcccHHHHHHHHHcCC
Q psy5950 242 KIDFIIC----LGGDGT-LLYASLLFQ-QSVPPVMAFHL-------------GSLGFLT-PFEFENFEDQVTNVLEGH 299 (511)
Q Consensus 242 ~~DlVIv----LGGDGT-lL~Aar~~~-~~~~PILGINl-------------G~LGFLt-~~~~~~~~~~L~~il~G~ 299 (511)
.+|+||+ -|.||. +++..+... ...+||+-+.. |-.+||. +++.+++...|.+++.+.
T Consensus 47 ~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~~~ 124 (138)
T 3c3m_A 47 PPDLVLLDIMMEPMDGWETLERIKTDPATRDIPVLMLTAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLARR 124 (138)
T ss_dssp CCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEESSCCCHHHHHHTTTTCSEEEECCCHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCEEEEECCCChHHHHHHhhcCHhheEeCCCCHHHHHHHHHHHHHHh
Confidence 4688776 255773 566666532 24678887742 2347776 788889999999988764
No 151
>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0
Probab=35.20 E-value=1.1e+02 Score=28.03 Aligned_cols=42 Identities=24% Similarity=0.179 Sum_probs=29.2
Q ss_pred CCccEEEEEcCch-h--------HHHHHHHcCCCCCcEEEEeCCCcccccc
Q psy5950 241 DKIDFIICLGGDG-T--------LLYASLLFQQSVPPVMAFHLGSLGFLTP 282 (511)
Q Consensus 241 ~~~DlVIvLGGDG-T--------lL~Aar~~~~~~~PILGINlG~LGFLt~ 282 (511)
.++|+||+.||.| . ++...+.+...+.+|.+|-.|.--+|..
T Consensus 70 ~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~gk~i~aiC~G~a~~La~ 120 (208)
T 3ot1_A 70 EAFDALALPGGVGGAQAFADSTALLALIDAFSQQGKLVAAICATPALVFAK 120 (208)
T ss_dssp GGCSEEEECCCHHHHHHHHTCHHHHHHHHHHHHTTCEEEEETTHHHHTTTT
T ss_pred cCCCEEEECCCchHHHHHhhCHHHHHHHHHHHHcCCEEEEEChhHHHHHHH
Confidence 4689999999964 2 3445555566788999998885234443
No 152
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=35.15 E-value=73 Score=26.72 Aligned_cols=55 Identities=24% Similarity=0.347 Sum_probs=34.3
Q ss_pred CccEEEE----EcCch-hHHHHHHHcCCCCCcEEEEe-------------CCCccccc-cCCcccHHHHHHHHHc
Q psy5950 242 KIDFIIC----LGGDG-TLLYASLLFQQSVPPVMAFH-------------LGSLGFLT-PFEFENFEDQVTNVLE 297 (511)
Q Consensus 242 ~~DlVIv----LGGDG-TlL~Aar~~~~~~~PILGIN-------------lG~LGFLt-~~~~~~~~~~L~~il~ 297 (511)
.+|+||+ -|.|| .+++..+... ..+||+-+. .|-.+||. +++.+++...|.++++
T Consensus 83 ~~dliilD~~l~~~~g~~~~~~lr~~~-~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~ 156 (157)
T 3hzh_A 83 NIDIVTLXITMPKMDGITCLSNIMEFD-KNARVIMISALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQRVMSVFV 156 (157)
T ss_dssp GCCEEEECSSCSSSCHHHHHHHHHHHC-TTCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTTC
T ss_pred CCCEEEEeccCCCccHHHHHHHHHhhC-CCCcEEEEeccCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 4677776 24565 3455555433 467887653 25667775 7777777777776653
No 153
>1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO structural genomics, JCSG, protein structure initiative, PS oxidoreductase; 1.50A {Thermotoga maritima} SCOP: e.22.1.2
Probab=35.04 E-value=24 Score=35.72 Aligned_cols=32 Identities=22% Similarity=0.354 Sum_probs=27.7
Q ss_pred CccEEEEEcCchhHHHHHHHcCC-CCCcEEEEeC
Q psy5950 242 KIDFIICLGGDGTLLYASLLFQQ-SVPPVMAFHL 274 (511)
Q Consensus 242 ~~DlVIvLGGDGTlL~Aar~~~~-~~~PILGINl 274 (511)
++|+||.+|| |+++-+++.+.. ..+|++.|-+
T Consensus 94 ~~d~IIavGG-Gsv~D~aK~iA~~~~~p~i~IPT 126 (376)
T 1kq3_A 94 ETDVVVGIGG-GKTLDTAKAVAYKLKKPVVIVPT 126 (376)
T ss_dssp TCCEEEEEES-HHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCEEEEeCC-cHHHHHHHHHHHhcCCCEEEecC
Confidence 7899999999 999999997764 4789999876
No 154
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=34.40 E-value=1.1e+02 Score=29.51 Aligned_cols=55 Identities=20% Similarity=0.228 Sum_probs=41.8
Q ss_pred CccEEEE---E--cCch-hHHHHHHHcCCCCCcEEEEeC-----------CCccccc-cCCcccHHHHHHHHHcC
Q psy5950 242 KIDFIIC---L--GGDG-TLLYASLLFQQSVPPVMAFHL-----------GSLGFLT-PFEFENFEDQVTNVLEG 298 (511)
Q Consensus 242 ~~DlVIv---L--GGDG-TlL~Aar~~~~~~~PILGINl-----------G~LGFLt-~~~~~~~~~~L~~il~G 298 (511)
.+|+||+ + |=|| .+++..|... .+||+.+.. |--+||+ ||+++++...|.+++..
T Consensus 205 ~~dlvl~D~~MPd~mdG~e~~~~ir~~~--~~piI~lT~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~l~~ 277 (286)
T 3n0r_A 205 TPGLVLADIQLADGSSGIDAVKDILGRM--DVPVIFITAFPERLLTGERPEPTFLITKPFQPETVKAAIGQALFF 277 (286)
T ss_dssp CCSEEEEESCCTTSCCTTTTTHHHHHHT--TCCEEEEESCGGGGCCSSSCCCSSEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEcCCCCCCCCHHHHHHHHHhcC--CCCEEEEeCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHh
Confidence 4788877 2 4477 5667777655 789987753 7778998 89999999999998864
No 155
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=34.25 E-value=1.5e+02 Score=26.09 Aligned_cols=57 Identities=21% Similarity=0.256 Sum_probs=39.9
Q ss_pred CccEEEE----EcCchh-HHHHHHHcCCCCCcEEEEe-------------CCCccccc-cCCcccHHHHHHHHHcCC
Q psy5950 242 KIDFIIC----LGGDGT-LLYASLLFQQSVPPVMAFH-------------LGSLGFLT-PFEFENFEDQVTNVLEGH 299 (511)
Q Consensus 242 ~~DlVIv----LGGDGT-lL~Aar~~~~~~~PILGIN-------------lG~LGFLt-~~~~~~~~~~L~~il~G~ 299 (511)
.+|+||+ -|.||. +++..+.. ...+||+-+. .|-.|||. +++++++...|.+++.|.
T Consensus 51 ~~dlvllD~~lp~~~g~~~~~~lr~~-~~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~ 126 (215)
T 1a04_A 51 DPDLILLDLNMPGMNGLETLDKLREK-SLSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAGE 126 (215)
T ss_dssp CCSEEEEETTSTTSCHHHHHHHHHHS-CCCSEEEEEECCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHSC
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHh-CCCCcEEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHcCC
Confidence 3677776 255773 45555543 2356777653 37778987 899999999999999875
No 156
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=34.23 E-value=36 Score=33.91 Aligned_cols=56 Identities=18% Similarity=0.230 Sum_probs=43.0
Q ss_pred CCCCCccEEEEEcCchhHHHHHHHcCCCCCcEEEEeCC-------------Ccccccc---CCcccHHHHHHHHHcC
Q psy5950 238 DLTDKIDFIICLGGDGTLLYASLLFQQSVPPVMAFHLG-------------SLGFLTP---FEFENFEDQVTNVLEG 298 (511)
Q Consensus 238 ~~~~~~DlVIvLGGDGTlL~Aar~~~~~~~PILGINlG-------------~LGFLt~---~~~~~~~~~L~~il~G 298 (511)
++...+|++|+=||=||++.|+.. ++|++.+..+ ..|.+.+ ++.+++.++|+++ +.
T Consensus 297 ~~l~~~d~~v~~~G~~t~~Ea~~~----G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~l-~~ 368 (415)
T 1iir_A 297 VLFGRVAAVIHHGGAGTTHVAARA----GAPQILLPQMADQPYYAGRVAELGVGVAHDGPIPTFDSLSAALATA-LT 368 (415)
T ss_dssp HHGGGSSEEEECCCHHHHHHHHHH----TCCEEECCCSTTHHHHHHHHHHHTSEEECSSSSCCHHHHHHHHHHH-TS
T ss_pred HHHhhCCEEEeCCChhHHHHHHHc----CCCEEECCCCCccHHHHHHHHHCCCcccCCcCCCCHHHHHHHHHHH-cC
Confidence 445789999999999999999876 8899998542 2455543 4667888888888 53
No 157
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=33.52 E-value=75 Score=26.21 Aligned_cols=60 Identities=22% Similarity=0.294 Sum_probs=39.7
Q ss_pred CccEEEE----EcCch-hHHHHHHHcCCCCCcEEEEe-------------CCCccccc-cCCcccHHHHHHHHHcCCcEE
Q psy5950 242 KIDFIIC----LGGDG-TLLYASLLFQQSVPPVMAFH-------------LGSLGFLT-PFEFENFEDQVTNVLEGHAAL 302 (511)
Q Consensus 242 ~~DlVIv----LGGDG-TlL~Aar~~~~~~~PILGIN-------------lG~LGFLt-~~~~~~~~~~L~~il~G~~~i 302 (511)
.+|+||+ -+.|| .+++..+.. ...+||+-+. .|-.|||. +++.+++...|.+++.+...+
T Consensus 50 ~~dlvi~d~~l~~~~g~~~~~~l~~~-~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~l~~~~~~~~~~ 128 (154)
T 2qsj_A 50 TVDLILLDVNLPDAEAIDGLVRLKRF-DPSNAVALISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLILEGEIFL 128 (154)
T ss_dssp CCSEEEECC------CHHHHHHHHHH-CTTSEEEEC-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHHTTCCBC
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHh-CCCCeEEEEeCCCCHHHHHHHHHccCCEEEeCCCCHHHHHHHHHHHHcCCEEc
Confidence 4687776 24455 355555554 2367887653 36778887 899999999999999986544
No 158
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=33.06 E-value=55 Score=26.59 Aligned_cols=58 Identities=19% Similarity=0.327 Sum_probs=36.8
Q ss_pred CccEEEE----EcCch-hHHHHHHHcCC-CCCcEEEEeC-------------CCccccc-cCCcccHHHHHHHHHcCC
Q psy5950 242 KIDFIIC----LGGDG-TLLYASLLFQQ-SVPPVMAFHL-------------GSLGFLT-PFEFENFEDQVTNVLEGH 299 (511)
Q Consensus 242 ~~DlVIv----LGGDG-TlL~Aar~~~~-~~~PILGINl-------------G~LGFLt-~~~~~~~~~~L~~il~G~ 299 (511)
.+|+||+ -|+|| .+++..+.... ..+||+-+.. |-.+||. +++.+++...|++++.+.
T Consensus 46 ~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 123 (140)
T 3n53_A 46 HPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQ 123 (140)
T ss_dssp CCSEEEEETTC------CHHHHHHTSTTCTTCCEEEEECC----CTTTTTTCCCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCEEEEecCCCHHHHHHHHhcCCCeeeeCCCCHHHHHHHHHHHHhhH
Confidence 4677776 25565 45555555432 4678876532 5567776 899999999999988764
No 159
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=32.97 E-value=90 Score=23.73 Aligned_cols=57 Identities=16% Similarity=0.150 Sum_probs=34.6
Q ss_pred CccEEEEE----cCchh-HHHHHHHcCC-CCCcEEEEeC----------CCccccc-cCCcccHHHHHHHHHcC
Q psy5950 242 KIDFIICL----GGDGT-LLYASLLFQQ-SVPPVMAFHL----------GSLGFLT-PFEFENFEDQVTNVLEG 298 (511)
Q Consensus 242 ~~DlVIvL----GGDGT-lL~Aar~~~~-~~~PILGINl----------G~LGFLt-~~~~~~~~~~L~~il~G 298 (511)
.+|+||+= +.||. ++...+.... ..+||+-+.. |-.+||. +++.+++...|.+++.+
T Consensus 45 ~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~ 118 (119)
T 2j48_A 45 QPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVLFLGEPPVDPLLTAQASAILSKPLDPQLLLTTLQGLCPP 118 (119)
T ss_dssp CCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEEEESSCCSSHHHHHHCSEECSSCSTTHHHHHHHHTTCCC
T ss_pred CCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEEEEeCCCCchhhhhcCHHHhccCCCCHHHHHHHHHHHhcC
Confidence 36777752 34553 5555555432 4678887643 3456765 77778887777766554
No 160
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=32.36 E-value=1.1e+02 Score=27.26 Aligned_cols=56 Identities=16% Similarity=0.224 Sum_probs=34.4
Q ss_pred CccEEEE----EcCch-hHHHHHHHc---CCCCCcEEEEeC--------------CCccccc-cCCcccHHHHHHHHHcC
Q psy5950 242 KIDFIIC----LGGDG-TLLYASLLF---QQSVPPVMAFHL--------------GSLGFLT-PFEFENFEDQVTNVLEG 298 (511)
Q Consensus 242 ~~DlVIv----LGGDG-TlL~Aar~~---~~~~~PILGINl--------------G~LGFLt-~~~~~~~~~~L~~il~G 298 (511)
.+|+||+ =|.|| .+++..+.. ....+||+-+.. |-.+||. +++ ++...|++++++
T Consensus 119 ~~dlillD~~lp~~~G~el~~~lr~~~~~~~~~~piI~ls~~~~~~~~~~~~~~~Ga~~~l~KP~~--~L~~~i~~~l~~ 196 (206)
T 3mm4_A 119 PFDYIFMDCQMPEMDGYEATREIRKVEKSYGVRTPIIAVSGHDPGSEEARETIQAGMDAFLDKSLN--QLANVIREIESK 196 (206)
T ss_dssp SCSEEEEESCCSSSCHHHHHHHHHHHHHTTTCCCCEEEEESSCCCHHHHHHHHHHTCSEEEETTCT--THHHHHHHHC--
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhhhhhcCCCCcEEEEECCCCcHHHHHHHHhCCCCEEEcCcHH--HHHHHHHHHHhh
Confidence 5788887 25677 455556553 235678887653 4456776 554 788888887765
Q ss_pred C
Q psy5950 299 H 299 (511)
Q Consensus 299 ~ 299 (511)
.
T Consensus 197 ~ 197 (206)
T 3mm4_A 197 R 197 (206)
T ss_dssp -
T ss_pred h
Confidence 3
No 161
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=31.87 E-value=74 Score=28.32 Aligned_cols=56 Identities=11% Similarity=0.186 Sum_probs=40.8
Q ss_pred CccEEEEEc-Cchh-HHHHHHHcCCCCCcEEEEeC-------------CCccccc-cC-CcccHHHHHHHHHcCC
Q psy5950 242 KIDFIICLG-GDGT-LLYASLLFQQSVPPVMAFHL-------------GSLGFLT-PF-EFENFEDQVTNVLEGH 299 (511)
Q Consensus 242 ~~DlVIvLG-GDGT-lL~Aar~~~~~~~PILGINl-------------G~LGFLt-~~-~~~~~~~~L~~il~G~ 299 (511)
.+|+|| +. .||. +++..+.. ...+||+-+.. |-.|||. ++ +++++...|.+++.|.
T Consensus 44 ~~dlvi-lp~~~g~~~~~~lr~~-~~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~~L~~~i~~~~~~~ 116 (223)
T 2hqr_A 44 NYDLVM-VSDKNALSFVSRIKEK-HSSIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFW 116 (223)
T ss_dssp CCSEEE-ECCTTHHHHHHHHHHH-CTTSEEEEEESSCCHHHHHHHHHHTCSEEEETTCSCTHHHHHHHHHHTSSC
T ss_pred CCCEEE-eCCCCHHHHHHHHHhC-CCCCcEEEEECCCCHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHhccc
Confidence 579999 64 4663 45555554 33688987753 6678886 88 9999999999998875
No 162
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=31.84 E-value=1e+02 Score=24.52 Aligned_cols=58 Identities=24% Similarity=0.367 Sum_probs=39.0
Q ss_pred CccEEEE----EcCchh-HHHHHHHcCCCCCcEEEEe-------------CCCccccc-cCCcccHHHHHHHHHcCC
Q psy5950 242 KIDFIIC----LGGDGT-LLYASLLFQQSVPPVMAFH-------------LGSLGFLT-PFEFENFEDQVTNVLEGH 299 (511)
Q Consensus 242 ~~DlVIv----LGGDGT-lL~Aar~~~~~~~PILGIN-------------lG~LGFLt-~~~~~~~~~~L~~il~G~ 299 (511)
.+|+||+ -|.||. +++..+......+||+-+. .|-.|||. +++++++...|++++...
T Consensus 48 ~~dlvllD~~l~~~~g~~~~~~l~~~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~ 124 (130)
T 1dz3_A 48 RPDILLLDIIMPHLDGLAVLERIRAGFEHQPNVIMLTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQVYGKT 124 (130)
T ss_dssp CCSEEEEESCCSSSCHHHHHHHHHHHCSSCCEEEEEEETTCHHHHHHHHHTTCEEEEECSSCCTTHHHHHHHHHHCC
T ss_pred CCCEEEEecCCCCCCHHHHHHHHHhcCCCCCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhcCC
Confidence 3677776 255774 5555554323456776552 36778886 899999999999987654
No 163
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=31.38 E-value=86 Score=30.39 Aligned_cols=122 Identities=18% Similarity=0.238 Sum_probs=61.2
Q ss_pred CCcEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccc---cCCCCccccccc--cccccCCCCCCCCCcc
Q psy5950 170 PPLTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLL---ATNPSFTVVKDK--LMTFRDGKDDLTDKID 244 (511)
Q Consensus 170 ~p~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l---~~~~~f~~~~~~--l~~~~~~~~~~~~~~D 244 (511)
....|+.+.+.....-...+.+.++.|.+...+.+.+--.-.....+ ..... +.+. +..+.+...++...+|
T Consensus 210 ~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~~~~l~i~G~g~~~~~l~~~~~~~~---l~~~v~~~g~~~~~~~~~~~ad 286 (394)
T 2jjm_A 210 SEKILIHISNFRKVKRVQDVVQAFAKIVTEVDAKLLLVGDGPEFCTILQLVKNLH---IEDRVLFLGKQDNVAELLAMSD 286 (394)
T ss_dssp --CEEEEECCCCGGGTHHHHHHHHHHHHHSSCCEEEEECCCTTHHHHHHHHHTTT---CGGGBCCCBSCSCTHHHHHTCS
T ss_pred CCeEEEEeeccccccCHHHHHHHHHHHHhhCCCEEEEECCchHHHHHHHHHHHcC---CCCeEEEeCchhhHHHHHHhCC
Confidence 44578888876654444555566666655434443332211110000 00000 0011 1111111222345678
Q ss_pred EEEEE----cCchhHHHHHHHcCCCCCcEEEEeCC---------CccccccC-CcccHHHHHHHHHcC
Q psy5950 245 FIICL----GGDGTLLYASLLFQQSVPPVMAFHLG---------SLGFLTPF-EFENFEDQVTNVLEG 298 (511)
Q Consensus 245 lVIvL----GGDGTlL~Aar~~~~~~~PILGINlG---------~LGFLt~~-~~~~~~~~L~~il~G 298 (511)
++|.- |.=.+++.|... +.||++.+.| .-|++.+. +++++.++|.++++.
T Consensus 287 v~v~ps~~e~~~~~~~EAma~----G~PvI~~~~~~~~e~v~~~~~g~~~~~~d~~~la~~i~~l~~~ 350 (394)
T 2jjm_A 287 LMLLLSEKESFGLVLLEAMAC----GVPCIGTRVGGIPEVIQHGDTGYLCEVGDTTGVADQAIQLLKD 350 (394)
T ss_dssp EEEECCSCCSCCHHHHHHHHT----TCCEEEECCTTSTTTCCBTTTEEEECTTCHHHHHHHHHHHHHC
T ss_pred EEEeccccCCCchHHHHHHhc----CCCEEEecCCChHHHhhcCCceEEeCCCCHHHHHHHHHHHHcC
Confidence 88843 222355555433 7899998874 45777653 678888888888764
No 164
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=30.66 E-value=1.5e+02 Score=27.10 Aligned_cols=56 Identities=25% Similarity=0.349 Sum_probs=39.0
Q ss_pred CccEEEEE----cCch-hHHHHHHHcCCCCCcEEEEe-------------CCCccccc-cCCcccHHHHHHHHHcC
Q psy5950 242 KIDFIICL----GGDG-TLLYASLLFQQSVPPVMAFH-------------LGSLGFLT-PFEFENFEDQVTNVLEG 298 (511)
Q Consensus 242 ~~DlVIvL----GGDG-TlL~Aar~~~~~~~PILGIN-------------lG~LGFLt-~~~~~~~~~~L~~il~G 298 (511)
.+|+||+= |+|| .+++..+... ..+||+-+. .|-.|||. +++++++...|..++.+
T Consensus 67 ~~dlvllD~~lp~~~g~~~~~~lr~~~-~~~~ii~lt~~~~~~~~~~~~~~Ga~~yl~Kp~~~~~L~~~i~~~~~~ 141 (250)
T 3r0j_A 67 RPDAVILDVXMPGMDGFGVLRRLRADG-IDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 141 (250)
T ss_dssp CCSEEEEESCCSSSCHHHHHHHHHHTT-CCCCEEEEECSTTHHHHHHHHTSTTCEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CCCCEEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHh
Confidence 46777762 5677 3555555432 367887654 36778887 89999999999998864
No 165
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=30.61 E-value=54 Score=28.46 Aligned_cols=55 Identities=24% Similarity=0.326 Sum_probs=37.8
Q ss_pred CCCccEEEE---EcCch-hHHHHHHHcCCCCCcEEEEeCC---------CccccccCCcccHHHHHHHHHcC
Q psy5950 240 TDKIDFIIC---LGGDG-TLLYASLLFQQSVPPVMAFHLG---------SLGFLTPFEFENFEDQVTNVLEG 298 (511)
Q Consensus 240 ~~~~DlVIv---LGGDG-TlL~Aar~~~~~~~PILGINlG---------~LGFLt~~~~~~~~~~L~~il~G 298 (511)
...+|++|. ..|=| +++.|.. .++||++.+.| .-|++.+-+.+++.++|.++++.
T Consensus 95 ~~~adi~v~ps~~e~~~~~~~Eama----~G~PvI~~~~~~~~e~i~~~~~g~~~~~d~~~l~~~i~~l~~~ 162 (177)
T 2f9f_A 95 YSRCKGLLCTAKDEDFGLTPIEAMA----SGKPVIAVNEGGFKETVINEKTGYLVNADVNEIIDAMKKVSKN 162 (177)
T ss_dssp HHHCSEEEECCSSCCSCHHHHHHHH----TTCCEEEESSHHHHHHCCBTTTEEEECSCHHHHHHHHHHHHHC
T ss_pred HHhCCEEEeCCCcCCCChHHHHHHH----cCCcEEEeCCCCHHHHhcCCCccEEeCCCHHHHHHHHHHHHhC
Confidence 346788876 22334 5555543 37899997763 46777766778899999998864
No 166
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=30.60 E-value=44 Score=33.35 Aligned_cols=57 Identities=16% Similarity=0.232 Sum_probs=42.8
Q ss_pred CCCCCCccEEEEEcCchhHHHHHHHcCCCCCcEEEEeCC-------------Cccccc---cCCcccHHHHHHHHHc
Q psy5950 237 DDLTDKIDFIICLGGDGTLLYASLLFQQSVPPVMAFHLG-------------SLGFLT---PFEFENFEDQVTNVLE 297 (511)
Q Consensus 237 ~~~~~~~DlVIvLGGDGTlL~Aar~~~~~~~PILGINlG-------------~LGFLt---~~~~~~~~~~L~~il~ 297 (511)
+++...+|++|+=||=||+..+... ++|++.+-.+ ..|... +++.+++.++|.++++
T Consensus 279 ~~ll~~~d~~v~~gG~~t~~Eal~~----GvP~v~~p~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~ 351 (404)
T 3h4t_A 279 QVLFGRVAAVVHHGGAGTTTAVTRA----GAPQVVVPQKADQPYYAGRVADLGVGVAHDGPTPTVESLSAALATALT 351 (404)
T ss_dssp HHHGGGSSEEEECCCHHHHHHHHHH----TCCEEECCCSTTHHHHHHHHHHHTSEEECSSSSCCHHHHHHHHHHHTS
T ss_pred HHHHhhCcEEEECCcHHHHHHHHHc----CCCEEEcCCcccHHHHHHHHHHCCCEeccCcCCCCHHHHHHHHHHHhC
Confidence 4455679999999999999998876 8899987432 235543 3466778888888876
No 167
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=29.88 E-value=1.5e+02 Score=23.01 Aligned_cols=58 Identities=22% Similarity=0.284 Sum_probs=39.0
Q ss_pred CccEEEE---E-cCchh-HHHHHHHcC-CCCCcEEEEe-------------CCCccccc-cCCcccHHHHHHHHHcCC
Q psy5950 242 KIDFIIC---L-GGDGT-LLYASLLFQ-QSVPPVMAFH-------------LGSLGFLT-PFEFENFEDQVTNVLEGH 299 (511)
Q Consensus 242 ~~DlVIv---L-GGDGT-lL~Aar~~~-~~~~PILGIN-------------lG~LGFLt-~~~~~~~~~~L~~il~G~ 299 (511)
.+|+||+ + |.||. +++..+... ...+||+-+. .|-.+||. +++.+++...|.+++.+.
T Consensus 45 ~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 122 (124)
T 1mb3_A 45 KPDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVVAVTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLERQ 122 (124)
T ss_dssp CCSEEEEESBCSSSBHHHHHHHHHHSTTTTTSCEEEEC------CHHHHHHHTCSEEECSSCCHHHHHHHHHHHHSCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHcCccccCCcEEEEECCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhcC
Confidence 3677775 2 45663 555555532 2367888763 25668886 889999999999888753
No 168
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=29.82 E-value=2.1e+02 Score=22.68 Aligned_cols=57 Identities=25% Similarity=0.384 Sum_probs=38.1
Q ss_pred CccEEEE---E-cCchh-HHHHHHHcCCCCCcEEEEe-------------CCCccccc-cCCcccHHHHHHHHHcCC
Q psy5950 242 KIDFIIC---L-GGDGT-LLYASLLFQQSVPPVMAFH-------------LGSLGFLT-PFEFENFEDQVTNVLEGH 299 (511)
Q Consensus 242 ~~DlVIv---L-GGDGT-lL~Aar~~~~~~~PILGIN-------------lG~LGFLt-~~~~~~~~~~L~~il~G~ 299 (511)
.+|+||+ + |.||. +++..+... ..+||+-+. .|-.|||. +++.+++...|.+++.+.
T Consensus 47 ~~dlvl~D~~l~~~~g~~~~~~l~~~~-~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 122 (136)
T 1mvo_A 47 KPDLIVLDVMLPKLDGIEVCKQLRQQK-LMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRS 122 (136)
T ss_dssp CCSEEEEESSCSSSCHHHHHHHHHHTT-CCCCEEEEECTTCCCCHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHTC
T ss_pred CCCEEEEecCCCCCCHHHHHHHHHcCC-CCCCEEEEECCCCHHHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHhh
Confidence 4677776 2 44663 455555432 357887663 36668886 889999999999988763
No 169
>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*
Probab=29.35 E-value=18 Score=32.68 Aligned_cols=35 Identities=23% Similarity=0.302 Sum_probs=24.8
Q ss_pred CccEEEEEcCchhHH----------HHHHHcCCCCCcEEEEeCCC
Q psy5950 242 KIDFIICLGGDGTLL----------YASLLFQQSVPPVMAFHLGS 276 (511)
Q Consensus 242 ~~DlVIvLGGDGTlL----------~Aar~~~~~~~PILGINlG~ 276 (511)
++|.||.-||-++.- ...+.+...+.||+||-.|.
T Consensus 38 ~~d~iil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~pilgIC~G~ 82 (196)
T 2nv0_A 38 EVDGLILPGGESTTMRRLIDTYQFMEPLREFAAQGKPMFGTCAGL 82 (196)
T ss_dssp GCSEEEECCSCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETHHH
T ss_pred hCCEEEECCCChhhHHHHhhhHHHHHHHHHHHHCCCcEEEECHHH
Confidence 579999999976643 22233334688999999874
No 170
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=29.35 E-value=1.1e+02 Score=24.60 Aligned_cols=60 Identities=13% Similarity=0.093 Sum_probs=40.7
Q ss_pred CCccEEEE----EcCch-hHHHHHHHc---CCCCCcEEEEeC-------------C-Cccccc-cCCcccHHHHHHHHHc
Q psy5950 241 DKIDFIIC----LGGDG-TLLYASLLF---QQSVPPVMAFHL-------------G-SLGFLT-PFEFENFEDQVTNVLE 297 (511)
Q Consensus 241 ~~~DlVIv----LGGDG-TlL~Aar~~---~~~~~PILGINl-------------G-~LGFLt-~~~~~~~~~~L~~il~ 297 (511)
..+|+||+ -|+|| .+++..+.. ....+||+-+.. | -.+||. +++.+++...|.+...
T Consensus 59 ~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~~~ 138 (146)
T 3ilh_A 59 RWPSIICIDINMPGINGWELIDLFKQHFQPMKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVLN 138 (146)
T ss_dssp CCCSEEEEESSCSSSCHHHHHHHHHHHCGGGTTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHHHC
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHHhhhhccCCCeEEEEeCCCChHHHHHHHhcCCcceeeeCCCCHHHHHHHHHHHHH
Confidence 45788887 25566 456666652 234678877643 4 556886 8999999999999988
Q ss_pred CCc
Q psy5950 298 GHA 300 (511)
Q Consensus 298 G~~ 300 (511)
+..
T Consensus 139 ~~~ 141 (146)
T 3ilh_A 139 EGH 141 (146)
T ss_dssp C--
T ss_pred hcc
Confidence 753
No 171
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=28.54 E-value=83 Score=28.96 Aligned_cols=113 Identities=9% Similarity=-0.012 Sum_probs=60.0
Q ss_pred CCCcEEEEEecC-CChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEE
Q psy5950 169 KPPLTVLVIKKV-RDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFII 247 (511)
Q Consensus 169 ~~p~~VlII~K~-~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVI 247 (511)
+..++|+++... .++-....+..+.+.+.+. +..+.+...- .+... ..+.+..+ +..++|.||
T Consensus 3 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~-g~~~~~~~~~-~~~~~--------~~~~~~~l------~~~~vdgiI 66 (291)
T 3l49_A 3 LEGKTIGITAIGTDHDWDLKAYQAQIAEIERL-GGTAIALDAG-RNDQT--------QVSQIQTL------IAQKPDAII 66 (291)
T ss_dssp CTTCEEEEEESCCSSHHHHHHHHHHHHHHHHT-TCEEEEEECT-TCHHH--------HHHHHHHH------HHHCCSEEE
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHHHc-CCEEEEEcCC-CCHHH--------HHHHHHHH------HHcCCCEEE
Confidence 346789988864 3443445556677777654 5555443211 11000 00001111 124689999
Q ss_pred EEcCchhH-HHHHHHcCCCCCcEEEEeCCCccccccCCcccH---HHHHHHHHc
Q psy5950 248 CLGGDGTL-LYASLLFQQSVPPVMAFHLGSLGFLTPFEFENF---EDQVTNVLE 297 (511)
Q Consensus 248 vLGGDGTl-L~Aar~~~~~~~PILGINlG~LGFLt~~~~~~~---~~~L~~il~ 297 (511)
+.+.|... -.....+...++|++.++...-+.+..+..++. ..+.+.+++
T Consensus 67 i~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~V~~D~~~~g~~~~~~l~~ 120 (291)
T 3l49_A 67 EQLGNLDVLNPWLQKINDAGIPLFTVDTATPHAINNTTSNNYSIGAELALQMVA 120 (291)
T ss_dssp EESSCHHHHHHHHHHHHHTTCCEEEESCCCTTCSEEEEECHHHHHHHHHHHHHH
T ss_pred EeCCChhhhHHHHHHHHHCCCcEEEecCCCCCcCceEecChHHHHHHHHHHHHH
Confidence 99998543 334455556689999998743333333444443 344555555
No 172
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=27.54 E-value=97 Score=25.52 Aligned_cols=57 Identities=23% Similarity=0.386 Sum_probs=38.6
Q ss_pred CccEEEE----EcCch-hHHHHHHHcC---CCCCcEEEEeC-------------CCccccc-cCCcccHHHHHHHHHcC
Q psy5950 242 KIDFIIC----LGGDG-TLLYASLLFQ---QSVPPVMAFHL-------------GSLGFLT-PFEFENFEDQVTNVLEG 298 (511)
Q Consensus 242 ~~DlVIv----LGGDG-TlL~Aar~~~---~~~~PILGINl-------------G~LGFLt-~~~~~~~~~~L~~il~G 298 (511)
.+|+||+ =|+|| .+++..+... ...+||+-+.. |-.+||. +++.+++.+.|.++..+
T Consensus 58 ~~dlvl~D~~mp~~~g~~~~~~lr~~~~~~~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 136 (143)
T 3m6m_D 58 DYDAVIVDLHMPGMNGLDMLKQLRVMQASGMRYTPVVVLSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLADLAVS 136 (143)
T ss_dssp CCSEEEEESCCSSSCHHHHHHHHHHHHHTTCCCCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHC--
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhchhccCCCCeEEEEeCCCCHHHHHHHHHcChhheeeCCCCHHHHHHHHHHHHHh
Confidence 5788887 36777 4566665432 23578887643 6667886 89999999999887654
No 173
>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A
Probab=27.20 E-value=29 Score=32.56 Aligned_cols=37 Identities=22% Similarity=0.293 Sum_probs=30.6
Q ss_pred CCccEEEEEcCchh-------------------HHHHHHHcCCCCCcEEEEeCCCc
Q psy5950 241 DKIDFIICLGGDGT-------------------LLYASLLFQQSVPPVMAFHLGSL 277 (511)
Q Consensus 241 ~~~DlVIvLGGDGT-------------------lL~Aar~~~~~~~PILGINlG~L 277 (511)
+++|+||+-||-|+ ++...+.+...+.||.+|-.|..
T Consensus 89 ~~~D~livpGG~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~gk~vaaIC~G~~ 144 (232)
T 1vhq_A 89 AELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPA 144 (232)
T ss_dssp GGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGGG
T ss_pred ccCCEEEECCCcchHHHHhhhhccccccccCHHHHHHHHHHHHcCCEEEEECHHHH
Confidence 46899999999765 66677777778899999999975
No 174
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=26.63 E-value=18 Score=32.84 Aligned_cols=32 Identities=16% Similarity=0.275 Sum_probs=20.9
Q ss_pred cEEEEEcCchhH-----HH-HHHHcCCCCCcEEEEeCCC
Q psy5950 244 DFIICLGGDGTL-----LY-ASLLFQQSVPPVMAFHLGS 276 (511)
Q Consensus 244 DlVIvLGGDGTl-----L~-Aar~~~~~~~PILGINlG~ 276 (511)
|.+|..||-|+. .. ..+.+ ..++|||||-+|.
T Consensus 49 ~~iil~gGpg~~~~~~~~~~l~~~~-~~~~PilGIC~G~ 86 (192)
T 1i1q_B 49 PVLMLSPGPGVPSEAGCMPELLTRL-RGKLPIIGICLGH 86 (192)
T ss_dssp EEEEECCCSSCGGGSTTHHHHHHHH-BTTBCEEEETHHH
T ss_pred CeEEECCCCcCchhCchHHHHHHHH-hcCCCEEEECcCh
Confidence 448888998872 11 12222 3578999999873
No 175
>3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: NAD EPE; 2.12A {Shewanella denitrificans}
Probab=25.31 E-value=37 Score=34.83 Aligned_cols=32 Identities=13% Similarity=0.110 Sum_probs=25.9
Q ss_pred CccEEEEEcCchhHHHHHHHcCC-------------------CCCcEEEEeC
Q psy5950 242 KIDFIICLGGDGTLLYASLLFQQ-------------------SVPPVMAFHL 274 (511)
Q Consensus 242 ~~DlVIvLGGDGTlL~Aar~~~~-------------------~~~PILGINl 274 (511)
++|+||.+|| |..+-+++.+.- ..+|++.|..
T Consensus 109 ~~D~IIavGG-GS~iD~AK~iA~~~~~~~~~~~~~~~~~~~~~~~P~i~IPT 159 (375)
T 3rf7_A 109 LPVSVVGLGG-GSTMDLAKAVSLMLTNPGSSSEYQGWDLIKNPAVHHIGIPT 159 (375)
T ss_dssp CCSEEEEEES-HHHHHHHHHHHHHTSSCSCGGGGCEESCCCSCCCCEEEEES
T ss_pred CCCEEEEeCC-cHHHHHHHHHHHHHhCCCCHHHhhccccccCCCCCEEEEcC
Confidence 4899999999 999999986532 2578998875
No 176
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=25.25 E-value=2e+02 Score=26.87 Aligned_cols=110 Identities=15% Similarity=0.107 Sum_probs=58.4
Q ss_pred CCcEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEE
Q psy5950 170 PPLTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICL 249 (511)
Q Consensus 170 ~p~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvL 249 (511)
.-++|++|.-+.+.....-...+.+.+++. ++.+.... +.. +....+.+. .+.+++|.|++
T Consensus 132 g~~~I~~i~~~~~~~~~~r~~g~~~al~~~-gi~~~~~~-~~~---------~~~~~~~~~-------~l~~~~dai~~- 192 (295)
T 3lft_A 132 NVKTIGALYSSSEDNSKTQVEEFKAYAEKA-GLTVETFA-VPS---------TNEIASTVT-------VMTSKVDAIWV- 192 (295)
T ss_dssp TCCEEEEEEETTCHHHHHHHHHHHHHHHHT-TCEEEEEE-ESS---------GGGHHHHHH-------HHTTTCSEEEE-
T ss_pred CCcEEEEEeCCCCcchHHHHHHHHHHHHHc-CCEEEEEe-cCC---------HHHHHHHHH-------HHHhcCCEEEE-
Confidence 358999998765544445556667777654 55542211 110 001111111 12246787776
Q ss_pred cCchhHHHHHH---H-cCCCCCcEEEEeC---CCccccccCCc--ccH----HHHHHHHHcCC
Q psy5950 250 GGDGTLLYASL---L-FQQSVPPVMAFHL---GSLGFLTPFEF--ENF----EDQVTNVLEGH 299 (511)
Q Consensus 250 GGDGTlL~Aar---~-~~~~~~PILGINl---G~LGFLt~~~~--~~~----~~~L~~il~G~ 299 (511)
+.|.+.+.+.+ . ....++||+|+.- +. |-|+.+.. .++ -+.+.++++|+
T Consensus 193 ~~D~~a~g~~~~l~~~~~~~~i~vig~d~~~~~~-~~Lttv~~~~~~~G~~Aa~~l~~~l~g~ 254 (295)
T 3lft_A 193 PIDNTIASGFPTVVSSNQSSKKPIYPSATAMVEV-GGLASVVIDQHDLGVATGKMIVQVLKGA 254 (295)
T ss_dssp CSCHHHHHTHHHHHHHTTTTCCCEEESSHHHHTT-TCCEEEECCHHHHHHHHHHHHHHHHTTC
T ss_pred CCchhHHHHHHHHHHHHHHcCCCEEeCCHHHHhc-CcEEEEecCHHHHHHHHHHHHHHHHCcC
Confidence 57888776443 2 2356899999863 22 45554443 222 23455667775
No 177
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=25.15 E-value=1.6e+02 Score=28.07 Aligned_cols=88 Identities=9% Similarity=-0.030 Sum_probs=47.5
Q ss_pred CCCcEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEE
Q psy5950 169 KPPLTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIIC 248 (511)
Q Consensus 169 ~~p~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIv 248 (511)
+..++|++|.. ++.........+.+.|++. ++.+..+..... ....|....+++. ..++|.|++
T Consensus 149 ~g~~~ia~i~~-~~~~~~~~~~~~~~~l~~~-G~~v~~~~~~~~-----~~~d~~~~~~~l~---------~~~~dai~~ 212 (375)
T 4evq_A 149 AGLKKAVTVTW-KYAAGEEMVSGFKKSFTAG-KGEVVKDITIAF-----PDVEFQSALAEIA---------SLKPDCVYA 212 (375)
T ss_dssp TTCCEEEEEEE-SSHHHHHHHHHHHHHHHHT-TCEEEEEEEECT-----TCCCCHHHHHHHH---------HHCCSEEEE
T ss_pred cCCcEEEEEec-CchHHHHHHHHHHHHHHHc-CCeEEEEEecCC-----CCccHHHHHHHHH---------hcCCCEEEE
Confidence 35679999974 4554555667777788764 555432211110 1111222211111 125799999
Q ss_pred EcCchhHHHHHHHcC--CCCCcEEEE
Q psy5950 249 LGGDGTLLYASLLFQ--QSVPPVMAF 272 (511)
Q Consensus 249 LGGDGTlL~Aar~~~--~~~~PILGI 272 (511)
.+-|...+.+.+.+. +..+|++|.
T Consensus 213 ~~~~~~a~~~~~~~~~~g~~vp~~~~ 238 (375)
T 4evq_A 213 FFSGGGALKFIKDYAAANLGIPLWGP 238 (375)
T ss_dssp ECCTHHHHHHHHHHHHTTCCCCEEEE
T ss_pred ecCcchHHHHHHHHHHcCCCceEEec
Confidence 888865444444332 345899985
No 178
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
Probab=25.13 E-value=3.9e+02 Score=24.33 Aligned_cols=102 Identities=12% Similarity=0.001 Sum_probs=54.9
Q ss_pred CcEEEEEecCC---ChhhHHHHHHHHHHHHhcCCeEEEEcCC-cc--c----------------cccccCCCCccccccc
Q psy5950 171 PLTVLVIKKVR---DVSVLQPFVKLVKWLIQEKSMLVYVEQS-VM--D----------------DTLLATNPSFTVVKDK 228 (511)
Q Consensus 171 p~~VlII~K~~---~~~~~~~~~el~~~L~~~~~~~V~ve~~-~~--~----------------~~~l~~~~~f~~~~~~ 228 (511)
.++|.|+.-.+ ++...+.+.+|.++|.+++ +.++---. .- . -|.......-..+.+.
T Consensus 13 ~~~VaV~Gs~~~g~~~~~~~~A~~lg~~La~~g-~~lVsGGg~~Gim~aa~~gAl~~gG~tigVlP~~~~~~~~~~~~~~ 91 (176)
T 2iz6_A 13 KPIIGVMGPGKADTAENQLVMANELGKQIATHG-WILLTGGRSLGVMHEAMKGAKEAGGTTIGVLPGPDTSEISDAVDIP 91 (176)
T ss_dssp CCEEEEECCCGGGCCHHHHHHHHHHHHHHHHTT-CEEEEECSSSSHHHHHHHHHHHTTCCEEEEECC-----CCTTCSEE
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC-CEEEECCCccCHhHHHHHHHHHcCCEEEEEeCchhhhhhccCCcee
Confidence 45799988433 6778899999999998753 33322211 00 0 0000000000000000
Q ss_pred c--ccccCCCCCCCCCccEEEEEcCc-hhHHHHHHHcCCCCCcEEEEeC
Q psy5950 229 L--MTFRDGKDDLTDKIDFIICLGGD-GTLLYASLLFQQSVPPVMAFHL 274 (511)
Q Consensus 229 l--~~~~~~~~~~~~~~DlVIvLGGD-GTlL~Aar~~~~~~~PILGINl 274 (511)
+ ..|..-..-+....|.+|++.|- |||--+...+. ...||+.+|.
T Consensus 92 i~~~~~~~Rk~~m~~~sda~IvlpGg~GTL~E~~~al~-~~kpV~~l~~ 139 (176)
T 2iz6_A 92 IVTGLGSARDNINALSSNVLVAVGMGPGTAAEVALALK-AKKPVVLLGT 139 (176)
T ss_dssp EECCCCSSSCCCCGGGCSEEEEESCCHHHHHHHHHHHH-TTCCEEEESC
T ss_pred EEcCCHHHHHHHHHHhCCEEEEecCCccHHHHHHHHHH-hCCcEEEEcC
Confidence 0 11111122234567888888665 99988887664 5889999986
No 179
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=24.69 E-value=2.3e+02 Score=27.00 Aligned_cols=86 Identities=12% Similarity=-0.056 Sum_probs=47.4
Q ss_pred CCcEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEE
Q psy5950 170 PPLTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICL 249 (511)
Q Consensus 170 ~p~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvL 249 (511)
..++|++|.-.++.-....+..+.+.+++. ++.+..+. +.. ....|.....++. ..++|.|++.
T Consensus 148 g~~~iaii~~~~~~~~~~~~~~~~~~~~~~-G~~v~~~~-~~~-----~~~d~~~~~~~l~---------~~~~d~v~~~ 211 (366)
T 3td9_A 148 GAKRVVVFTDVEQDYSVGLSNFFINKFTEL-GGQVKRVF-FRS-----GDQDFSAQLSVAM---------SFNPDAIYIT 211 (366)
T ss_dssp CCCEEEEEEETTCHHHHHHHHHHHHHHHHT-TCEEEEEE-ECT-----TCCCCHHHHHHHH---------HTCCSEEEEC
T ss_pred CCcEEEEEEeCCCcHHHHHHHHHHHHHHHC-CCEEEEEE-eCC-----CCccHHHHHHHHH---------hcCCCEEEEc
Confidence 457999997655555555667777788764 55544332 111 1112222212221 2457989887
Q ss_pred cCchh---HHHHHHHcCCCCCcEEEE
Q psy5950 250 GGDGT---LLYASLLFQQSVPPVMAF 272 (511)
Q Consensus 250 GGDGT---lL~Aar~~~~~~~PILGI 272 (511)
+-|.. ++++++.. +..+|++|.
T Consensus 212 ~~~~~a~~~~~~~~~~-g~~~~~~~~ 236 (366)
T 3td9_A 212 GYYPEIALISRQARQL-GFTGYILAG 236 (366)
T ss_dssp SCHHHHHHHHHHHHHT-TCCSEEEEC
T ss_pred cchhHHHHHHHHHHHc-CCCceEEee
Confidence 77654 44555544 346788764
No 180
>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ...
Probab=24.51 E-value=1.6e+02 Score=33.22 Aligned_cols=98 Identities=11% Similarity=0.041 Sum_probs=55.1
Q ss_pred cCCCCcEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCC-CCCccE
Q psy5950 167 WYKPPLTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDL-TDKIDF 245 (511)
Q Consensus 167 w~~~p~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~-~~~~Dl 245 (511)
|.-.-++|+|+.-..-+++ .+..+++.|++.+....++-.+... +....... +. .....++. ...+|.
T Consensus 596 ~ti~grKVaILlaDGfEe~--El~~pvdaLr~AG~~V~vVS~~~g~---V~gs~G~~-----V~-aD~t~~~v~s~~fDA 664 (753)
T 3ttv_A 596 GDVKGRVVAILLNDEVRSA--DLLAILKALKAKGVHAKLLYSRMGE---VTADDGTV-----LP-IAATFAGAPSLTVDA 664 (753)
T ss_dssp CCCTTCEEEEECCTTCCHH--HHHHHHHHHHHHTCEEEEEESSSSE---EECTTSCE-----EE-CCEETTTSCGGGCSE
T ss_pred CCCCCCEEEEEecCCCCHH--HHHHHHHHHHHCCCEEEEEEcCCCe---EEeCCCCE-----Ee-cccchhhCCCcCCCE
Confidence 4455689999986443332 3567778887665434444433221 11110000 00 00001221 235899
Q ss_pred EEEEcC-------chhHHHHHHHcCCCCCcEEEEeCC
Q psy5950 246 IICLGG-------DGTLLYASLLFQQSVPPVMAFHLG 275 (511)
Q Consensus 246 VIvLGG-------DGTlL~Aar~~~~~~~PILGINlG 275 (511)
||+.|| |+.++...+.+....+||-+|-.|
T Consensus 665 LVVPGGg~~~Lr~d~~vl~~Vre~~~~gKpIAAIC~G 701 (753)
T 3ttv_A 665 VIVPCGNIADIADNGDANYYLMEAYKHLKPIALAGDA 701 (753)
T ss_dssp EEECCSCGGGTTTCHHHHHHHHHHHHTTCCEEEEGGG
T ss_pred EEECCCChHHhhhCHHHHHHHHHHHhcCCeEEEECch
Confidence 999999 335677777777789999999776
No 181
>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B
Probab=24.04 E-value=22 Score=32.26 Aligned_cols=35 Identities=26% Similarity=0.336 Sum_probs=23.7
Q ss_pred CCccEEEEEc-Cc-hh---------HHHHHHHcCCCCCcEEEEeCC
Q psy5950 241 DKIDFIICLG-GD-GT---------LLYASLLFQQSVPPVMAFHLG 275 (511)
Q Consensus 241 ~~~DlVIvLG-GD-GT---------lL~Aar~~~~~~~PILGINlG 275 (511)
.++|.||.-| |+ ++ ++...+.+...++|||||-.|
T Consensus 41 ~~~dglilpG~g~~~~~~~~l~~~~~~~~i~~~~~~~~PilGIC~G 86 (201)
T 1gpw_B 41 DLYDLLFIPGVGHFGEGMRRLRENDLIDFVRKHVEDERYVVGVCLG 86 (201)
T ss_dssp SCCSEEEECCCSCSHHHHHHHHHTTCHHHHHHHHHTTCEEEEETHH
T ss_pred cCCCEEEECCCCcHHHHHHHHHhhCHHHHHHHHHHcCCeEEEEChh
Confidence 4679998877 44 22 334445444567999999987
No 182
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=23.88 E-value=2.9e+02 Score=24.99 Aligned_cols=106 Identities=13% Similarity=-0.080 Sum_probs=52.3
Q ss_pred EEEEec-CCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEEcCc
Q psy5950 174 VLVIKK-VRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICLGGD 252 (511)
Q Consensus 174 VlII~K-~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvLGGD 252 (511)
|+|+.. ..++-....+..+.+.+.+. +..+.+... ..+... . . +.+.. -...++|.||+.+.+
T Consensus 2 Igvi~~~~~~~~~~~~~~gi~~~~~~~-g~~~~~~~~-~~~~~~----~-~---~~~~~------l~~~~vdgiI~~~~~ 65 (276)
T 2h0a_A 2 VSVLLPFVATEFYRRLVEGIEGVLLEQ-RYDLALFPI-LSLARL----K-R---YLENT------TLAYLTDGLILASYD 65 (276)
T ss_dssp EEEEECCSCCHHHHHHHHHHHHHHGGG-TCEEEECCC-CSCCCC----C-------------------CCCSEEEEESCC
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeC-CCchhh----H-H---HHHHH------HHhCCCCEEEEecCC
Confidence 666664 44555555666677777654 556555321 111100 0 0 00011 123578999999987
Q ss_pred hhHHHHHHHcCCCCCcEEEEeCCCccccccCCcccH---HHHHHHHHc
Q psy5950 253 GTLLYASLLFQQSVPPVMAFHLGSLGFLTPFEFENF---EDQVTNVLE 297 (511)
Q Consensus 253 GTlL~Aar~~~~~~~PILGINlG~LGFLt~~~~~~~---~~~L~~il~ 297 (511)
.+- .....+...++|++.++...-+ +..+..++. ..+.+.+++
T Consensus 66 ~~~-~~~~~~~~~~iPvV~~~~~~~~-~~~V~~d~~~~~~~a~~~L~~ 111 (276)
T 2h0a_A 66 LTE-RFEEGRLPTERPVVLVDAQNPR-YDSVYLDNRLGGRLAGAYLAR 111 (276)
T ss_dssp CC-------CCSCSSCEEEESSCCTT-SEEEEECSHHHHHHHHHHHTT
T ss_pred CCH-HHHHHHhhcCCCEEEEeccCCC-CCEEEEccHHHHHHHHHHHHH
Confidence 652 2334555678999999864333 333444443 344555554
No 183
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=23.57 E-value=96 Score=33.31 Aligned_cols=35 Identities=20% Similarity=0.262 Sum_probs=23.9
Q ss_pred CCccEEEEEc-Cchh----------HHHHHHHcCCCCCcEEEEeCC
Q psy5950 241 DKIDFIICLG-GDGT----------LLYASLLFQQSVPPVMAFHLG 275 (511)
Q Consensus 241 ~~~DlVIvLG-GDGT----------lL~Aar~~~~~~~PILGINlG 275 (511)
..+|.+|.-| ||=+ ++...+.+...++|||||-.|
T Consensus 43 ~~~DglILpGgG~~~~~~~~l~~~~~~~~i~~~~~~g~PiLGIC~G 88 (555)
T 1jvn_A 43 SGTSRLILPGVGNYGHFVDNLFNRGFEKPIREYIESGKPIMGIXVG 88 (555)
T ss_dssp TTCSCEEEEECSCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEEEHH
T ss_pred ccCCEEEECCCCchHhHhhhhhhccHHHHHHHHHHcCCcEEEEchh
Confidence 3679888888 5622 233444444567999999988
No 184
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=23.29 E-value=90 Score=28.76 Aligned_cols=112 Identities=13% Similarity=0.041 Sum_probs=57.7
Q ss_pred CCcEEEEEecC-CChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEE
Q psy5950 170 PPLTVLVIKKV-RDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIIC 248 (511)
Q Consensus 170 ~p~~VlII~K~-~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIv 248 (511)
..++|+++... .++-....+..+.+.+.+. +..+.+...- .+... ..+.+..+ +..++|.||+
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~-g~~~~~~~~~-~~~~~--------~~~~~~~l------~~~~vdgiI~ 70 (293)
T 3l6u_A 7 KRNIVGFTIVNDKHEFAQRLINAFKAEAKAN-KYEALVATSQ-NSRIS--------EREQILEF------VHLKVDAIFI 70 (293)
T ss_dssp --CEEEEEESCSCSHHHHHHHHHHHHHHHHT-TCEEEEEECS-SCHHH--------HHHHHHHH------HHTTCSEEEE
T ss_pred CCcEEEEEEecCCcHHHHHHHHHHHHHHHHc-CCEEEEECCC-CCHHH--------HHHHHHHH------HHcCCCEEEE
Confidence 45689988864 4444455556666667654 5555443211 11000 00001111 1357899999
Q ss_pred EcCchhHH-HHHHHcCCCCCcEEEEeCCCcc--ccccCCcccH---HHHHHHHHc
Q psy5950 249 LGGDGTLL-YASLLFQQSVPPVMAFHLGSLG--FLTPFEFENF---EDQVTNVLE 297 (511)
Q Consensus 249 LGGDGTlL-~Aar~~~~~~~PILGINlG~LG--FLt~~~~~~~---~~~L~~il~ 297 (511)
.+.+...+ .+.+.+...++|++-++...-+ .+..+..++. ..+.+.+++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~~~~~l~~ 125 (293)
T 3l6u_A 71 TTLDDVYIGSAIEEAKKAGIPVFAIDRMIRSDAVVSSITSNNQMIGEQLASYIKN 125 (293)
T ss_dssp ECSCTTTTHHHHHHHHHTTCCEEEESSCCCCTTCSEEEEECHHHHHHHHHHHHHH
T ss_pred ecCChHHHHHHHHHHHHcCCCEEEecCCCCCCcceeEEecCHHHHHHHHHHHHHH
Confidence 99886643 3344555568999999864333 2333334433 334444544
No 185
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=22.79 E-value=2.9e+02 Score=25.15 Aligned_cols=112 Identities=13% Similarity=-0.009 Sum_probs=59.7
Q ss_pred CCCcEEEEEecC-CChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEE
Q psy5950 169 KPPLTVLVIKKV-RDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFII 247 (511)
Q Consensus 169 ~~p~~VlII~K~-~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVI 247 (511)
+..++|+|+... .++-....+..+.+.+.+. +..+.+-..-. +... ..+.+..+ ...++|.||
T Consensus 5 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~-g~~~~~~~~~~-~~~~--------~~~~~~~l------~~~~vdgiI 68 (276)
T 3jy6_A 5 QSSKLIAVIVANIDDYFSTELFKGISSILESR-GYIGVLFDANA-DIER--------EKTLLRAI------GSRGFDGLI 68 (276)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHTT-TCEEEEEECTT-CHHH--------HHHHHHHH------HTTTCSEEE
T ss_pred CCCcEEEEEeCCCCchHHHHHHHHHHHHHHHC-CCEEEEEeCCC-CHHH--------HHHHHHHH------HhCCCCEEE
Confidence 456789988863 3444455556666667654 55554432111 1000 00001111 135789999
Q ss_pred EEcCchhHHHHHHHcCCCCCcEEEEeCCCccc-cccCCccc---HHHHHHHHHcC
Q psy5950 248 CLGGDGTLLYASLLFQQSVPPVMAFHLGSLGF-LTPFEFEN---FEDQVTNVLEG 298 (511)
Q Consensus 248 vLGGDGTlL~Aar~~~~~~~PILGINlG~LGF-Lt~~~~~~---~~~~L~~il~G 298 (511)
+.+.+. -.....+...++|++-|+...-+. +.-+..++ ...+.+.+++-
T Consensus 69 i~~~~~--~~~~~~l~~~~iPvV~i~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~ 121 (276)
T 3jy6_A 69 LQSFSN--PQTVQEILHQQMPVVSVDREMDACPWPQVVTDNFEAAKAATTAFRQQ 121 (276)
T ss_dssp EESSCC--HHHHHHHHTTSSCEEEESCCCTTCSSCEEECCHHHHHHHHHHHHHTT
T ss_pred EecCCc--HHHHHHHHHCCCCEEEEecccCCCCCCEEEEChHHHHHHHHHHHHHc
Confidence 999886 444555666789999998632211 22233333 34455566653
No 186
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=22.77 E-value=3.1e+02 Score=24.99 Aligned_cols=111 Identities=12% Similarity=-0.049 Sum_probs=56.1
Q ss_pred CCCcEEEEEec--CCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEE
Q psy5950 169 KPPLTVLVIKK--VRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFI 246 (511)
Q Consensus 169 ~~p~~VlII~K--~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlV 246 (511)
+..++|+|+.. ..++-....+..+.+.+.+. +..+.+-.. ..+. . ... +.+. .-...++|.|
T Consensus 9 ~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~-g~~~~~~~~-~~~~----~-~~~---~~~~------~l~~~~vdgi 72 (289)
T 3g85_A 9 QSKPTIALYWSSDISVNIISRFLRGLQSKLAKQ-NYNYNVVIC-PYKT----D-CLH---LEKG------ISKENSFDAA 72 (289)
T ss_dssp --CCEEEEEEETTSCGGGHHHHHHHHHHHHHHT-TTCSEEEEE-EECT----T-CGG---GCGG------GSTTTCCSEE
T ss_pred CCCceEEEEeccccchHHHHHHHHHHHHHHHHc-CCeEEEEec-CCCc----h-hHH---HHHH------HHhccCCCEE
Confidence 34678998886 34555555666677777654 333222110 0000 0 000 0001 1124579999
Q ss_pred EEEcCchhHHHHHHHcCCCCCcEEEEeCCCccccccCCccc---HHHHHHHHHc
Q psy5950 247 ICLGGDGTLLYASLLFQQSVPPVMAFHLGSLGFLTPFEFEN---FEDQVTNVLE 297 (511)
Q Consensus 247 IvLGGDGTlL~Aar~~~~~~~PILGINlG~LGFLt~~~~~~---~~~~L~~il~ 297 (511)
|+.+.+.+-...... ...++|++-++.-.-+ +.-+..++ ...+.+.+++
T Consensus 73 Ii~~~~~~~~~~~~~-~~~~iPvV~~~~~~~~-~~~V~~D~~~~~~~a~~~L~~ 124 (289)
T 3g85_A 73 IIANISNYDLEYLNK-ASLTLPIILFNRLSNK-YSSVNVDNYKMGEKASLLFAK 124 (289)
T ss_dssp EESSCCHHHHHHHHH-CCCSSCEEEESCCCSS-SEEEEECHHHHHHHHHHHHHH
T ss_pred EEecCCcccHHHHHh-ccCCCCEEEECCCCCC-CCEEEeCHHHHHHHHHHHHHH
Confidence 999988665333333 3568999999864322 22233333 3345555554
No 187
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=22.07 E-value=1.6e+02 Score=24.11 Aligned_cols=56 Identities=20% Similarity=0.250 Sum_probs=38.4
Q ss_pred CccEEEE---E-cCchh-HHHHHHHcCC-CCCcEEEEe-------------CCCccccc-cCCcccHHHHHHHHHc
Q psy5950 242 KIDFIIC---L-GGDGT-LLYASLLFQQ-SVPPVMAFH-------------LGSLGFLT-PFEFENFEDQVTNVLE 297 (511)
Q Consensus 242 ~~DlVIv---L-GGDGT-lL~Aar~~~~-~~~PILGIN-------------lG~LGFLt-~~~~~~~~~~L~~il~ 297 (511)
.+|+||+ + |.||- +++..+.... ..+||+-+. .|-.|||. +++.+++...|+++..
T Consensus 61 ~~dlillD~~lp~~~g~~l~~~l~~~~~~~~~piiils~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 136 (149)
T 1i3c_A 61 RPNLILLDLNLPKKDGREVLAEIKQNPDLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGIES 136 (149)
T ss_dssp CCSEEEECSCCSSSCHHHHHHHHHHCTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHhCcCcCCCeEEEEECCCChHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 5788886 2 55774 5666665322 367888663 26678886 8888888888888754
No 188
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=22.04 E-value=90 Score=25.15 Aligned_cols=57 Identities=19% Similarity=0.370 Sum_probs=36.8
Q ss_pred CCccEEEE---E-cCch-hHHHHHHHcCC-CCCcEEEEe-------------CCCccccc-cCCcccHHHHHHHHHc
Q psy5950 241 DKIDFIIC---L-GGDG-TLLYASLLFQQ-SVPPVMAFH-------------LGSLGFLT-PFEFENFEDQVTNVLE 297 (511)
Q Consensus 241 ~~~DlVIv---L-GGDG-TlL~Aar~~~~-~~~PILGIN-------------lG~LGFLt-~~~~~~~~~~L~~il~ 297 (511)
..+|+||+ + |.|| .+++..+.... ..+||+-+. .|-.|||. +++.+++...|+++++
T Consensus 61 ~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~ 137 (149)
T 1k66_A 61 PRPAVILLDLNLPGTDGREVLQEIKQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIK 137 (149)
T ss_dssp CCCSEEEECSCCSSSCHHHHHHHHTTSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhCcccCCCeEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 45788886 2 4466 24444443221 357888763 36678886 8888898888888765
No 189
>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2
Probab=21.65 E-value=48 Score=30.47 Aligned_cols=37 Identities=30% Similarity=0.365 Sum_probs=28.6
Q ss_pred CCccEEEEEcCchh---------HHHHHHHcCCCCCcEEEEeCCCc
Q psy5950 241 DKIDFIICLGGDGT---------LLYASLLFQQSVPPVMAFHLGSL 277 (511)
Q Consensus 241 ~~~DlVIvLGGDGT---------lL~Aar~~~~~~~PILGINlG~L 277 (511)
..+|+||+.||.|+ ++...+.+.....||.+|-.|..
T Consensus 88 ~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaiC~G~~ 133 (224)
T 1u9c_A 88 HGFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVCHGPS 133 (224)
T ss_dssp SSCSEEEECCCTTHHHHSTTCHHHHHHHHHHHHTTCEEEEETTGGG
T ss_pred hhCCEEEECCCcchHHHhhcCHHHHHHHHHHHHCCCEEEEEChHHH
Confidence 46899999999876 34555666667889999998854
No 190
>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...
Probab=21.62 E-value=56 Score=29.47 Aligned_cols=36 Identities=11% Similarity=0.088 Sum_probs=27.2
Q ss_pred CCccEEEEEcCch-h--------HHHHHHHcCCCCCcEEEEeCCC
Q psy5950 241 DKIDFIICLGGDG-T--------LLYASLLFQQSVPPVMAFHLGS 276 (511)
Q Consensus 241 ~~~DlVIvLGGDG-T--------lL~Aar~~~~~~~PILGINlG~ 276 (511)
.++|+||+.||.| . ++...+.+.....||.+|-.|.
T Consensus 65 ~~~D~livpGG~~~~~~l~~~~~~~~~l~~~~~~gk~i~aiC~G~ 109 (197)
T 2rk3_A 65 GPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIATICAGP 109 (197)
T ss_dssp CCCSEEEECCCHHHHHHHHHCHHHHHHHHHHHHTTCEEEEETTTH
T ss_pred cCCCEEEECCCchhHHHhhhCHHHHHHHHHHHHcCCEEEEECHHH
Confidence 5689999999974 2 3445555556788999999985
No 191
>4eys_A MCCC family protein; MCCF like, serine peptidase, csgid, structural genomics, NIA national institute of allergy and infectious diseases; HET: AMP; 1.58A {Streptococcus pneumoniae} PDB: 4e94_A*
Probab=21.56 E-value=70 Score=32.38 Aligned_cols=93 Identities=16% Similarity=0.172 Sum_probs=51.1
Q ss_pred CCcEEEEEecCCChh----hHHHHHHHHHHHHhcCCeEEEEcCCccccc-cccC--CCCccccccccccccCCCCCCCCC
Q psy5950 170 PPLTVLVIKKVRDVS----VLQPFVKLVKWLIQEKSMLVYVEQSVMDDT-LLAT--NPSFTVVKDKLMTFRDGKDDLTDK 242 (511)
Q Consensus 170 ~p~~VlII~K~~~~~----~~~~~~el~~~L~~~~~~~V~ve~~~~~~~-~l~~--~~~f~~~~~~l~~~~~~~~~~~~~ 242 (511)
|..+|+||.-..... ....+.+.+++|++ .+.+|.+-+.+.... .++. ..+... |..+ .. ...
T Consensus 4 ~~D~I~ivaPSs~~~~~~~~~~~~~~~~~~L~~-~G~~v~~~~~~~~~~~~~agtd~~Ra~d----L~~a---~~--Dp~ 73 (346)
T 4eys_A 4 MVSTIGIVSLSSGIIGEDFVKHEVDLGIQRLKD-LGLNPIFLPHSLKGLDFIKDHPEARAED----LIHA---FS--DDS 73 (346)
T ss_dssp CCCEEEEECSSCCGGGSGGGHHHHHHHHHHHHH-TTCEEEECTTTTSCHHHHHHCHHHHHHH----HHHH---HH--CTT
T ss_pred cCcEEEEEeCCCcccccccCHHHHHHHHHHHHh-CCCEEEECCchhccCCccCCCHHHHHHH----HHHH---hh--CCC
Confidence 567999998644321 34567788889975 678888776654421 1110 011111 1110 01 246
Q ss_pred ccEEEE-EcCchhH--HHHH------HHcCCCCCcEEEEe
Q psy5950 243 IDFIIC-LGGDGTL--LYAS------LLFQQSVPPVMAFH 273 (511)
Q Consensus 243 ~DlVIv-LGGDGTl--L~Aa------r~~~~~~~PILGIN 273 (511)
+|.|++ .||+|+. |-.. ..+.+ .++++|+.
T Consensus 74 i~aI~~~rGG~g~~rlLp~L~d~~~~~~~~~-~K~~iGyS 112 (346)
T 4eys_A 74 IDMILCAIGGDDTYRLLPYLFENDQLQKVIK-QKIFLGFS 112 (346)
T ss_dssp CCEEEECCCCSCGGGGHHHHHTTSHHHHHCC-CCEEEECT
T ss_pred CCEEEEcccccCHHHHHHHhhchhhhhHhhC-CcEEEEec
Confidence 788887 5999984 3222 12223 47888863
No 192
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=21.14 E-value=3.2e+02 Score=21.76 Aligned_cols=56 Identities=21% Similarity=0.273 Sum_probs=34.5
Q ss_pred CccEEEE---E-cCchh-HHHHHHHcCCCCCcEEEEe-C-C--------Cccccc-cCCcccHHHHHHHHHcC
Q psy5950 242 KIDFIIC---L-GGDGT-LLYASLLFQQSVPPVMAFH-L-G--------SLGFLT-PFEFENFEDQVTNVLEG 298 (511)
Q Consensus 242 ~~DlVIv---L-GGDGT-lL~Aar~~~~~~~PILGIN-l-G--------~LGFLt-~~~~~~~~~~L~~il~G 298 (511)
.+|+||+ + |.||. ++...+. ....+||+-+. . . -.+||. +++.+++...|.+++.+
T Consensus 60 ~~dlvilD~~l~~~~g~~~~~~l~~-~~~~~~ii~ls~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~~ 131 (138)
T 2b4a_A 60 TCDLLIVSDQLVDLSIFSLLDIVKE-QTKQPSVLILTTGRHELIESSEHNLSYLQKPFAISELRAAIDYHKPS 131 (138)
T ss_dssp SCSEEEEETTCTTSCHHHHHHHHTT-SSSCCEEEEEESCC--CCCCSSSCEEEEESSCCHHHHHHHHHHTCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-hCCCCCEEEEECCCCCHHHHHHHHHheeeCCCCHHHHHHHHHHHHHh
Confidence 4688776 2 34552 3444443 22467888876 2 1 136665 78888888888887665
No 193
>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}
Probab=20.98 E-value=45 Score=30.92 Aligned_cols=39 Identities=21% Similarity=0.212 Sum_probs=31.3
Q ss_pred CCCCCccEEEEEcCch------hHHHHHHHcCCCCCcEEEEeCCC
Q psy5950 238 DLTDKIDFIICLGGDG------TLLYASLLFQQSVPPVMAFHLGS 276 (511)
Q Consensus 238 ~~~~~~DlVIvLGGDG------TlL~Aar~~~~~~~PILGINlG~ 276 (511)
+...++|+||+-||.| .++...+.+.....+|.+|-.|.
T Consensus 59 ~~~~~~D~livpGG~~~~~~~~~l~~~l~~~~~~gk~iaaiC~G~ 103 (206)
T 3f5d_A 59 LEPANFNLLVMIGGDSWSNDNKKLLHFVKTAFQKNIPIAAICGAV 103 (206)
T ss_dssp SSCSCCSEEEECCBSCCCCCCHHHHHHHHHHHHTTCCEEEETHHH
T ss_pred hCCcCCCEEEEcCCCChhhcCHHHHHHHHHHHHcCCEEEEECHHH
Confidence 3445789999999954 57888888777889999998885
No 194
>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}
Probab=20.78 E-value=2.1e+02 Score=32.01 Aligned_cols=88 Identities=16% Similarity=0.071 Sum_probs=52.3
Q ss_pred CCcEEEEEecCCChhhHHHHHHHHHHHHhcCCeEEEEcCCccccccccCCCCccccccccccccCCCCCCCCCccEEEEE
Q psy5950 170 PPLTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICL 249 (511)
Q Consensus 170 ~p~~VlII~K~~~~~~~~~~~el~~~L~~~~~~~V~ve~~~~~~~~l~~~~~f~~~~~~l~~~~~~~~~~~~~~DlVIvL 249 (511)
.-++|+|+.--.+-+ ...+..+.+.|++.+....+|..+... .+.. +|. +.-...+|.||+.
T Consensus 536 ~grKVaILvadG~fE-~~El~~p~~aL~~aGa~V~vVsp~~g~-----------GvD~---t~~---~~~s~~fDAVvlP 597 (688)
T 3ej6_A 536 ATLRVGVLSTTKGGS-LDKAKALKEQLEKDGLKVTVIAEYLAS-----------GVDQ---TYS---AADATAFDAVVVA 597 (688)
T ss_dssp TTCEEEEECCSSSSH-HHHHHHHHHHHHHTTCEEEEEESSCCT-----------TCCE---ETT---TCCGGGCSEEEEC
T ss_pred cCCEEEEEccCCCcc-HHHHHHHHHHHHHCCCEEEEEeCCCCC-----------Cccc---Ccc---cCChhcCcEEEEC
Confidence 357899998533122 234567888888766544455443221 0100 111 1113468999999
Q ss_pred cCc-h---------------hHHHHHHHcCCCCCcEEEEeCC
Q psy5950 250 GGD-G---------------TLLYASLLFQQSVPPVMAFHLG 275 (511)
Q Consensus 250 GGD-G---------------TlL~Aar~~~~~~~PILGINlG 275 (511)
||- | .++..++.+....+||.+|--|
T Consensus 598 GG~~~~~~~~~~~d~Lr~~~~a~~fV~e~~~hgKpIAAIchg 639 (688)
T 3ej6_A 598 EGAERVFSGKGAMSPLFPAGRPSQILTDGYRWGKPVAAVGSA 639 (688)
T ss_dssp TTCCTTTSTTTTCCTTSCTTHHHHHHHHHHHTTCCEEEEGGG
T ss_pred CCcccccccccchhhhccCHHHHHHHHHHHHcCCEEEEeCcc
Confidence 993 3 4566667777789999988654
No 195
>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A
Probab=20.10 E-value=54 Score=28.60 Aligned_cols=36 Identities=19% Similarity=0.323 Sum_probs=27.5
Q ss_pred CCccEEEEEcCchhH--------HHHHHHcCCCCCcEEEEeCCC
Q psy5950 241 DKIDFIICLGGDGTL--------LYASLLFQQSVPPVMAFHLGS 276 (511)
Q Consensus 241 ~~~DlVIvLGGDGTl--------L~Aar~~~~~~~PILGINlG~ 276 (511)
.++|.+|+-||.|+. +...+.+.....||.+|-.|.
T Consensus 62 ~~~D~livpGG~~~~~~~~~~~l~~~l~~~~~~~k~i~aiC~G~ 105 (168)
T 3l18_A 62 DEFDALVLPGGKAPEIVRLNEKAVMITRRMFEDDKPVASICHGP 105 (168)
T ss_dssp GGCSEEEECCBSHHHHHTTCHHHHHHHHHHHHTTCCEEEETTTH
T ss_pred hhCCEEEECCCcCHHHhccCHHHHHHHHHHHHCCCEEEEECHhH
Confidence 368999999998752 344555556788999999884
Done!