RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5950
(511 letters)
>gnl|CDD|215505 PLN02935, PLN02935, Bifunctional NADH kinase/NAD(+) kinase.
Length = 508
Score = 341 bits (876), Expect = e-112
Identities = 146/320 (45%), Positives = 213/320 (66%), Gaps = 9/320 (2%)
Query: 165 LTWYKPPLTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTV 224
L W P TVL+I K SV ++V+WL ++K + +YVE V + LL+ + F
Sbjct: 188 LKWESDPQTVLIITKPNSTSVRVLCAEMVRWLREQKGLNIYVEPRVKKE-LLSESSYFNF 246
Query: 225 VKDKLMTFRDGKDDLT--DKIDFIICLGGDGTLLYASLLFQQSVPPVMAFHLGSLGFLTP 282
V+ T+ D K+ L K+D +I LGGDGT+L+A+ +F+ VPPV+ F +GSLGF+TP
Sbjct: 247 VQ----TWEDEKEILLLHTKVDLVITLGGDGTVLWAASMFKGPVPPVVPFSMGSLGFMTP 302
Query: 283 FEFENFEDQVTNVLEGHAALTLRSRLRCIIMRKNEETAKDAKPPTNILVLNEVVIDRGPS 342
F E + D + +L+G ++TLR RL+C I+R + + + P ILVLNEV IDRG S
Sbjct: 303 FHSEQYRDCLDAILKGPISITLRHRLQCHIIRDAAKNEYETEEP--ILVLNEVTIDRGIS 360
Query: 343 PYLSNIDLYLDGKLITSVQGDGLIVSTPTGSTAYAVAAGASMIHPSVPAIMVTPICPHSL 402
+L+N++ Y D +T VQGDGLI+ST +GSTAY++AAG SM+HP VP I+ TPICPHSL
Sbjct: 361 SFLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSL 420
Query: 403 SFRPIVVPAGVELKISVSPDSRNTAWVSFDGRNRQELLHGDSLRVTTSIYPVPSICAQDQ 462
SFRP+++P V +++ V +SR AW SFDG++R++L GD+L + + +PVP+ C +
Sbjct: 421 SFRPLILPEYVTIRVQVPFNSRGQAWASFDGKDRKQLSAGDALVCSMAPWPVPTACQVES 480
Query: 463 IADWFDSLGECLHWNVRKRQ 482
D+ S+ + LHWN+RK Q
Sbjct: 481 TNDFLRSIHDGLHWNLRKTQ 500
>gnl|CDD|215386 PLN02727, PLN02727, NAD kinase.
Length = 986
Score = 325 bits (835), Expect = e-101
Identities = 159/341 (46%), Positives = 219/341 (64%), Gaps = 18/341 (5%)
Query: 151 SAMVMTIQDPASQRLTWYKPPLTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSV 210
S++ T Q L W P TVL++KK+ +++ ++ +L ++ M V VE V
Sbjct: 658 SSLAFTHPSTQQQMLMWKSTPKTVLLLKKLGQ-ELMEEAKEVASFLYHQEKMNVLVEPDV 716
Query: 211 MDDTLLATNPSFTVVKDKLMTF-RDGKDDLTDKIDFIICLGGDGTLLYASLLFQQSVPPV 269
D + A P F V+ TF DL +++DF+ CLGGDG +L+AS LF+ +VPPV
Sbjct: 717 HD--IFARIPGFGFVQ----TFYSQDTSDLHERVDFVACLGGDGVILHASNLFRGAVPPV 770
Query: 270 MAFHLGSLGFLTPFEFENFEDQVTNVLEGHAAL-----TLRSRLRCIIMRKNEETAKDAK 324
++F+LGSLGFLT FE+F + V+ G+ L TLR RLRC I R + A
Sbjct: 771 VSFNLGSLGFLTSHYFEDFRQDLRQVIHGNNTLDGVYITLRMRLRCEIFRNGK-----AM 825
Query: 325 PPTNILVLNEVVIDRGPSPYLSNIDLYLDGKLITSVQGDGLIVSTPTGSTAYAVAAGASM 384
P VLNEVV+DRG +PYLS I+ Y +LIT VQGDG+IV+TPTGSTAY+ AAG SM
Sbjct: 826 PGKVFDVLNEVVVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSM 885
Query: 385 IHPSVPAIMVTPICPHSLSFRPIVVPAGVELKISVSPDSRNTAWVSFDGRNRQELLHGDS 444
+HP+VP ++ TPICPHSLSFRP+++P L++ + D+R+ AWVSFDG+ RQ+L GDS
Sbjct: 886 VHPNVPCMLFTPICPHSLSFRPVILPDSARLELKIPDDARSNAWVSFDGKRRQQLSRGDS 945
Query: 445 LRVTTSIYPVPSICAQDQIADWFDSLGECLHWNVRKRQKHL 485
+R++ S +P+P++ DQ DWF SL CL+WN R QK L
Sbjct: 946 VRISMSQHPLPTVNKSDQTGDWFRSLIRCLNWNERLDQKAL 986
>gnl|CDD|223139 COG0061, nadF, NAD kinase [Coenzyme metabolism].
Length = 281
Score = 253 bits (649), Expect = 3e-81
Identities = 108/305 (35%), Positives = 157/305 (51%), Gaps = 26/305 (8%)
Query: 174 VLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFR 233
V ++ + L+ +L ++L + V V+Q + ++L F
Sbjct: 3 VGIVGRPDKPEALKIAKRLYEFLKFKGVT-VEVDQEL---------------AEELKDFA 46
Query: 234 DGKDDLTDKIDFIICLGGDGTLLYASLLFQQSVPPVMAFHLGSLGFLTPFEFENFEDQVT 293
D DD +K D I+ LGGDGTLL A+ L + PV+ +LG LGFLT FE + E +
Sbjct: 47 DYVDDDEEKADLIVVLGGDGTLLRAARLLARLDIPVLGINLGHLGFLTDFEPDELEKALD 106
Query: 294 NVLEGHAALTLRSRLRCIIMRKNEETAKDAKPPTNILVLNEVVIDRGPSPYLSNIDLYLD 353
+LEG + R L + R + A L LNEVVI RG + ++Y+D
Sbjct: 107 ALLEGEYRIEERLLLEVSVNRGDIRRA---------LALNEVVIHRGSPAKMIEFEVYID 157
Query: 354 GKLITSVQGDGLIVSTPTGSTAYAVAAGASMIHPSVPAIMVTPICPHSLSFRPIVVPAGV 413
+ S +GDGLIVSTPTGSTAY ++AG ++HP + AI +TPICPHSLSFRP+V+P+
Sbjct: 158 DEFFESFRGDGLIVSTPTGSTAYNLSAGGPILHPGLDAIQLTPICPHSLSFRPLVLPSSS 217
Query: 414 ELKISVSPDSRNTAWVSFDGRNRQELLHGDSLRVTTSIYPVPSICAQDQIADWFDSLGEC 473
++I V + A V DG+ + GD + + S Y I + D+F+ L
Sbjct: 218 TVRIEVLLTPKRDAVVVVDGQELLLINPGDRIEIRRSPYKARFIRLRS-YDDFFERLRSK 276
Query: 474 LHWNV 478
L W V
Sbjct: 277 LIWGV 281
>gnl|CDD|216543 pfam01513, NAD_kinase, ATP-NAD kinase. Members of this family
include ATP-NAD kinases EC:2.7.1.23, which catalyzes the
phosphorylation of NAD to NADP utilising ATP and other
nucleoside triphosphates as well as inorganic
polyphosphate as a source of phosphorus. Also includes
NADH kinases EC:2.7.1.86.
Length = 243
Score = 217 bits (554), Expect = 1e-67
Identities = 92/216 (42%), Positives = 127/216 (58%), Gaps = 9/216 (4%)
Query: 242 KIDFIICLGGDGTLLYASLLFQQSVPPVMAFHLGSLGFLTPFEFENFEDQVTNVLEGHAA 301
+D I+ LGGDGT L A+ L P++ + G+LGFLT F E + +LEG
Sbjct: 35 GVDLIVVLGGDGTALDAARLLGDHDIPILGINTGTLGFLTEFSPEEAAKLLDALLEGEYK 94
Query: 302 LTLRSRLRCIIMRKNEETAKDAKPPTNILVLNEVVIDRGPSPYLSNIDLYLDGKLITSVQ 361
+ R L I+ R D L LNEVVI GP+ + I++Y+DG+L+ S++
Sbjct: 95 IEKRELLDVIVRRSKRLLIVD-------LALNEVVIIGGPASTMIEIEVYIDGELLESIR 147
Query: 362 GDGLIVSTPTGSTAYAVAAGASMIHPSVPAIMVTPICPHSLSFRPIVVPAGVELKISVSP 421
GDGLIVSTPTGSTAY+++AG +I P V AI++TPICPHSLS RPIVVP+ K+ +
Sbjct: 148 GDGLIVSTPTGSTAYSLSAGGPIISPGVLAILLTPICPHSLSSRPIVVPS--SSKLRIRL 205
Query: 422 DSRNTAWVSFDGRNRQELLHGDSLRVTTSIYPVPSI 457
DS+ A + DG+ +L GD + V S Y +
Sbjct: 206 DSKEEALLVLDGQRELDLKPGDEVTVRKSPYKPKFV 241
>gnl|CDD|179257 PRK01231, ppnK, inorganic polyphosphate/ATP-NAD kinase;
Provisional.
Length = 295
Score = 178 bits (455), Expect = 3e-52
Identities = 87/244 (35%), Positives = 132/244 (54%), Gaps = 9/244 (3%)
Query: 236 KDDLTDKIDFIICLGGDGTLLYASLLFQQSVPPVMAFHLGSLGFLTPFEFENFEDQVTNV 295
+ L + D +I +GGDG+LL A+ + PV+ + G LGFLT + E ++ V
Sbjct: 56 RKLLGEVCDLVIVVGGDGSLLGAARALARHNVPVLGINRGRLGFLTDIRPDELEFKLAEV 115
Query: 296 LEGHAALTLRSRLRCIIMRKNEETAKDAKPPTNILVLNEVVIDRGPSPYLSNIDLYLDGK 355
L+GH R L + R E + LN+VV+ G S + +LY+DG+
Sbjct: 116 LDGHYQEEERFLLEAEVRRGGEVIGQG-------DALNDVVLHPGKSTRMIEFELYIDGQ 168
Query: 356 LITSVQGDGLIVSTPTGSTAYAVAAGASMIHPSVPAIMVTPICPHSLSFRPIVVPAGVEL 415
+ S + DGLIVSTPTGSTAYA++ G ++HP + AI++ P+ PH+LS RPIVV E+
Sbjct: 169 FVCSQRSDGLIVSTPTGSTAYALSGGGPIMHPKLDAIVLVPMFPHTLSSRPIVVDGNSEI 228
Query: 416 KISVSPDSRNTAWVSFDGRNRQELLHGDSLRVTTSIYPVPSICAQDQIADWFDSLGECLH 475
KI +S D+R VS DG+N L GD++ + + I D +++++ L
Sbjct: 229 KIVISKDNRTYPRVSCDGQNSVTLAPGDTVTIRKKPQKLRLIHPLDY--NYYETCRTKLG 286
Query: 476 WNVR 479
W R
Sbjct: 287 WGSR 290
>gnl|CDD|179379 PRK02155, ppnK, NAD(+)/NADH kinase family protein; Provisional.
Length = 291
Score = 153 bits (389), Expect = 7e-43
Identities = 77/235 (32%), Positives = 124/235 (52%), Gaps = 13/235 (5%)
Query: 244 DFIICLGGDGTLL-YASLLFQQSVPPVMAFHLGSLGFLTPFEFENFEDQVTNVLEGHAAL 302
D + LGGDGT+L L VP + H G LGF+T ++ ++ + +L G+
Sbjct: 65 DLAVVLGGDGTMLGIGRQLAPYGVPLIGINH-GRLGFITDIPLDDMQETLPPMLAGNYEE 123
Query: 303 TLRSRLRCIIMRKNEETAKDAKPPTNILVLNEVVIDRGPSPYLSNIDLYLDGKLITSVQG 362
R L ++R + E A L N+VV++R + + + +DG+ + + +
Sbjct: 124 EERMLLEARVVR-DGEPIFHA------LAFNDVVVNRSGFSGMVELRVSVDGRFMYNQRS 176
Query: 363 DGLIVSTPTGSTAYAVAAGASMIHPSVPAIMVTPICPHSLSFRPIVVPAGVELKISVSPD 422
DGLIV+TPTGSTAYA++AG ++HP +P ++ PI PH+LS RPIV+P E+ I +
Sbjct: 177 DGLIVATPTGSTAYALSAGGPILHPQLPGWVLVPIAPHTLSNRPIVLPDDSEVAIQIV-- 234
Query: 423 SRNTAWVSFDGRNRQELLHGDSLRVTTSIYPVPSICAQDQIADWFDSLGECLHWN 477
V+FD ++ L GD + V S + V + ++ +L + LHWN
Sbjct: 235 GGRDVSVNFDMQSLTSLELGDRIEVRRSPHTVRFLHPVGY--SYYATLRKKLHWN 287
>gnl|CDD|237601 PRK14076, pnk, inorganic polyphosphate/ATP-NAD kinase; Provisional.
Length = 569
Score = 159 bits (404), Expect = 1e-42
Identities = 86/286 (30%), Positives = 150/286 (52%), Gaps = 27/286 (9%)
Query: 167 WYKPPLTVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVK 226
W P ++ ++ + + +K++K+L K + +E + + +K
Sbjct: 286 WRIKPTKFGIVSRIDNEEAINLALKIIKYLD-SKGIPYELESFLYN-----------KLK 333
Query: 227 DKLMTFRDGKDDLTDKIDFIICLGGDGTLLYASLLFQQSVPPVMAFHLGSLGFLTPFEFE 286
++L + DD+ + I II +GGDGT+L AS L P++ ++G++GFLT F E
Sbjct: 334 NRLNEECNLIDDIEE-ISHIISIGGDGTVLRASKLVNGEEIPIICINMGTVGFLTEFSKE 392
Query: 287 NFEDQVTNVLEGHAALTLRSRLRCIIMRKNEE-TAKDAKPPTNILVLNEVVI-DRGPSPY 344
+ +++ G + R++L I++ + A LNEVVI + P+
Sbjct: 393 EIFKAIDSIISGEYEIEKRTKLSGFILKDGHQNILPSA--------LNEVVITTKNPAKM 444
Query: 345 LSNIDLYLDGKLITSVQGDGLIVSTPTGSTAYAVAAGASMIHPSVPAIMVTPICPHSLSF 404
L + ++Y++G+L+ V+ DG+I+STPTGSTAY+++AG ++ P+V ++ PICP LS
Sbjct: 445 L-HFEVYVNGELVEEVRADGIIISTPTGSTAYSLSAGGPIVEPTVDGFIIVPICPFKLSS 503
Query: 405 RPIVVPAGVELKISVSPDSRNTAWVSFDGRNRQELLHGDSLRVTTS 450
RP+VV A E+KI + + +A V DG E GD + S
Sbjct: 504 RPLVVSANSEIKIKL---LKKSALVVIDGSIEFEAKKGDEIIFRKS 546
>gnl|CDD|179862 PRK04539, ppnK, inorganic polyphosphate/ATP-NAD kinase;
Provisional.
Length = 296
Score = 145 bits (368), Expect = 8e-40
Identities = 77/246 (31%), Positives = 126/246 (51%), Gaps = 15/246 (6%)
Query: 236 KDDLTDKIDFIICLGGDGTLLYASLLFQQSVPPVMAFHLGSLGFLTPFEFENFEDQVTNV 295
K +L D + LGGDGT L + P++ + G LGFLT E D++ V
Sbjct: 62 KTELGQYCDLVAVLGGDGTFLSVAREIAPRAVPIIGINQGHLGFLTQIPREYMTDKLLPV 121
Query: 296 LEGHAALTLRSRLRCIIMRKNEETAKDAKPPTNILVLNEVVIDRGPSPYLSNIDLYLDGK 355
LEG R + ++R+ + + L LN+ V+ RG + + +++++ +
Sbjct: 122 LEGKYLAEERILIEAALIREGKTAERA-------LALNDAVLSRGGAGQMIEFEVFVNRE 174
Query: 356 LITSVQGDGLIVSTPTGSTAYAVAAGASMIHPSVPAIMVTPICPHSLSFRPIVVPAGVEL 415
+ + + DGLIVSTPTGSTAY++AAG ++ + A + PICP S++ RPI +P E+
Sbjct: 175 FVYTQRSDGLIVSTPTGSTAYSLAAGGPIMQAGLHAFTLVPICPQSMTNRPIAIPDTSEI 234
Query: 416 KISVSP--DSRNTAWVSFDGRNRQELLHGDSLRVTTSIYPVPSICAQDQIADWFDSLGEC 473
+I V+ D+R V FDG+ ++ + D R+T Y P +F +L +
Sbjct: 235 EILVTQGGDAR----VHFDGQTHIDVQNLD--RITIRRYRNPLRILHPTDYQYFKTLRQK 288
Query: 474 LHWNVR 479
LHW +
Sbjct: 289 LHWGEQ 294
>gnl|CDD|179352 PRK01911, ppnK, inorganic polyphosphate/ATP-NAD kinase;
Provisional.
Length = 292
Score = 143 bits (364), Expect = 3e-39
Identities = 73/248 (29%), Positives = 122/248 (49%), Gaps = 15/248 (6%)
Query: 187 QPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFI 246
P+++ + ++E+ V +E+ +D L + F D ++L D +
Sbjct: 15 SPYIQELFDELEERGAEVLIEEKFLD--FLKQDLKFHPSYDTFSDN----EELDGSADMV 68
Query: 247 ICLGGDGTLLYASLLFQQSVPPVMAFHLGSLGFLTPFEFENFEDQVTNVLEGHAALTLRS 306
I +GGDGT L + S P++ + G LGFL E E+ + +L G + RS
Sbjct: 69 ISIGGDGTFLRTATYVGNSNIPILGINTGRLGFLATVSKEEIEETIDELLNGDYTIEERS 128
Query: 307 RLRCIIMRKNEETAKDAKPPTNILVLNEVVIDRGPSPYLSNIDLYLDGKLITSVQGDGLI 366
L+ + N + + LNE+ I + + + + YL+G+ + S DGLI
Sbjct: 129 LLQ---LESNPKLFGELN-----FALNEIAILKRDTSSMITVHTYLNGEYLNSYWADGLI 180
Query: 367 VSTPTGSTAYAVAAGASMIHPSVPAIMVTPICPHSLSFRPIVVPAGVELKISVSPDSRNT 426
V+TPTGST Y+++ G +I P + ++TPI PH+L+ RP+V+P E+ + V S N
Sbjct: 181 VATPTGSTGYSLSCGGPIIVPDAKSFVITPIAPHNLNVRPLVIPDDTEITLEVESRSDNF 240
Query: 427 AWVSFDGR 434
VS D R
Sbjct: 241 L-VSLDSR 247
>gnl|CDD|179455 PRK02645, ppnK, inorganic polyphosphate/ATP-NAD kinase;
Provisional.
Length = 305
Score = 143 bits (364), Expect = 4e-39
Identities = 76/190 (40%), Positives = 108/190 (56%), Gaps = 20/190 (10%)
Query: 239 LTDKIDFIICLGGDGTLLYAS-LLFQQSVPPVMAFHLG-SLGFLT-PFEFENFEDQVTNV 295
++ ID I LGGDGT+L A+ L +P +++ ++G LGFLT P + E +
Sbjct: 54 ASELIDLAIVLGGDGTVLAAARHLAPHDIP-ILSVNVGGHLGFLTHPRDLLQDESVWDRL 112
Query: 296 LEGHAALTLRSRLRCIIM---RKNEETAKDAKPPTNILVLNE-----VVIDRGPSPYLSN 347
E A+ R L+ + R NEE + + LN+ DR P+
Sbjct: 113 QEDRYAIERRMMLQARVFEGDRSNEEPVSE-----SYYALNDFYLKPASEDRSPT---CI 164
Query: 348 IDLYLDGKLITSVQGDGLIVSTPTGSTAYAVAAGASMIHPSVPAIMVTPICPHSLSFRPI 407
++L +DG+++ QGDGLIVSTPTGSTAY +AAG ++HP + AI+VTPICP SLS RPI
Sbjct: 165 LELEIDGEVVDQYQGDGLIVSTPTGSTAYTMAAGGPILHPGIDAIIVTPICPMSLSSRPI 224
Query: 408 VVPAGVELKI 417
V+P G + I
Sbjct: 225 VIPPGSRVVI 234
>gnl|CDD|235122 PRK03378, ppnK, inorganic polyphosphate/ATP-NAD kinase;
Provisional.
Length = 292
Score = 140 bits (354), Expect = 7e-38
Identities = 78/271 (28%), Positives = 135/271 (49%), Gaps = 21/271 (7%)
Query: 173 TVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTF 232
+ ++ R + L L WL K V VEQ + + L + T+
Sbjct: 7 CIGIVGHPRHPTALTTHEMLYHWLT-SKGYEVIVEQQIAHELQLKNVKTGTLA------- 58
Query: 233 RDGKDDLTDKIDFIICLGGDGTLLYASLLFQQSVPPVMAFHLGSLGFLTPFEFENFEDQV 292
++ + D I +GGDG +L A+ + + V+ + G+LGFLT + +N Q+
Sbjct: 59 -----EIGQQADLAIVVGGDGNMLGAARVLARYDIKVIGINRGNLGFLTDLDPDNALQQL 113
Query: 293 TNVLEGHAALTLRSRLRCIIMRKNEETAKDAKPPTNILVLNEVVIDRGPSPYLSNIDLYL 352
++VLEGH R L + R ++ +NEVV+ G ++ ++Y+
Sbjct: 114 SDVLEGHYISEKRFLLEAQVCRHGQQKRIST-------AINEVVLHPGKVAHMIEFEVYI 166
Query: 353 DGKLITSVQGDGLIVSTPTGSTAYAVAAGASMIHPSVPAIMVTPICPHSLSFRPIVVPAG 412
D S + DGLI+STPTGSTAY+++AG ++ PS+ AI + P+ PH+LS RP+V+ +
Sbjct: 167 DDNFAFSQRSDGLIISTPTGSTAYSLSAGGPILTPSLDAITLVPMFPHTLSARPLVIDSS 226
Query: 413 VELKISVSPDSRNTAWVSFDGRNRQELLHGD 443
+++ SP+ R+ +S D + + G+
Sbjct: 227 STIRLKFSPN-RSDLEISCDSQIALPIQPGE 256
>gnl|CDD|179635 PRK03708, ppnK, inorganic polyphosphate/ATP-NAD kinase;
Provisional.
Length = 277
Score = 137 bits (346), Expect = 8e-37
Identities = 78/218 (35%), Positives = 120/218 (55%), Gaps = 14/218 (6%)
Query: 234 DGKDDLTD-KIDFIICLGGDGTLLYASLLFQQSVPPVMAFHLGSLGFLTPFEFENFEDQV 292
+ L + +DFII +GGDGT+L ++ +P ++ ++G+LGFLT E E +
Sbjct: 48 EDVLPLEEMDVDFIIAIGGDGTILRIEHKTKKDIP-ILGINMGTLGFLTEVEPEETFFAL 106
Query: 293 TNVLEGHAALTLRSRLRCIIMRKNEETAKDAKPPTNILVLNEVVIDRGPSPYLSNIDLYL 352
+ +LEG + R +LR I N E DA LNEVVI G + ++ Y+
Sbjct: 107 SRLLEGDYFIDERIKLRVYI---NGENVPDA--------LNEVVILTGIPGKIIHLKYYV 155
Query: 353 DGKLITSVQGDGLIVSTPTGSTAYAVAAGASMIHPSVPAIMVTPICPHSLSFRPIVVPAG 412
DG+L V+ DGLI+STPTGSTAYA++AG + P + AI++ P+CP LS RP+VVP+
Sbjct: 156 DGELADEVRADGLIISTPTGSTAYAMSAGGPFVDPRLDAILIAPLCPFKLSSRPMVVPSS 215
Query: 413 VELKISVSPDSRNTAWVSFDGRNRQELLHGDSLRVTTS 450
+ + + R + DG+ +EL + + S
Sbjct: 216 SRIDVKLLRTGRE-IILVIDGQYYEELPPDTEITIKKS 252
>gnl|CDD|172567 PRK14077, pnk, inorganic polyphosphate/ATP-NAD kinase; Provisional.
Length = 287
Score = 134 bits (339), Expect = 7e-36
Identities = 77/242 (31%), Positives = 121/242 (50%), Gaps = 13/242 (5%)
Query: 235 GKDDLTDKIDFIICLGGDGTLLYASLLFQQSVPPVMAFHLGSLGFLTPFEFENFEDQVTN 294
G D+L DF+I LGGDGTL+ + V+ H G LGFLT + E
Sbjct: 57 GLDELFKISDFLISLGGDGTLISLCRKAAEYDKFVLGIHAGHLGFLTDITVDEAEKFFQA 116
Query: 295 VLEGHAALTLRSRLRCIIMRKNEETAKDAKPPTNILVLNEVVIDRGPSPYLSNIDLYLDG 354
+G + L + +K + + L N+VVI + +++I+ +L+
Sbjct: 117 FFQGEFEIEKPYMLSVFLEKKQGKILEK-------LAFNDVVISKNNQASMAHIEAFLNE 169
Query: 355 KLITSVQGDGLIVSTPTGSTAYAVAAGASMIHPSVPAIMVTPICPHSLSFRPIVVPAGVE 414
K GDG+IV+TP GSTAY ++A +I+P ++TP+C HSL+ RPIV+P G E
Sbjct: 170 KYFNEYFGDGVIVATPAGSTAYNMSANGPIIYPLSQVFILTPVCSHSLTQRPIVLPKGFE 229
Query: 415 LKISVSPDSRNTAWVSFDGRNRQELLHGDSLRVTTSIYPVPSICAQDQIADWFDSLGECL 474
++ D + DG++R ++ S++V S V I +++ D+F L E L
Sbjct: 230 VEFKTKSD----CILCIDGQDRYKMNDFKSIKVGLSDKNVALIRHKNR--DYFQILKEKL 283
Query: 475 HW 476
HW
Sbjct: 284 HW 285
>gnl|CDD|179241 PRK01185, ppnK, inorganic polyphosphate/ATP-NAD kinase;
Provisional.
Length = 271
Score = 122 bits (309), Expect = 8e-32
Identities = 61/217 (28%), Positives = 113/217 (52%), Gaps = 16/217 (7%)
Query: 234 DGKDDLTDKIDFIICLGGDGTLLYASLLFQQSVPPVMAFHLGSLGFLTPFEFENFEDQVT 293
DG D D II +GGDGT+L Q++ P++ ++G LGFLT E + +
Sbjct: 44 DGLDIEEINADVIITIGGDGTIL---RTLQRAKGPILGINMGGLGFLTEIEIDEVGSAIK 100
Query: 294 NVLEGHAALTLRSRLRCIIMRKNEETAKDAKPPTNILVLNEVVIDRGPSPYLSNIDLYLD 353
++ G + R +L+ + N E +D NE VI + +Y D
Sbjct: 101 KLIRGEYFIDERMKLK---VYINGERLEDC--------TNEAVIHTDRIAKIRQFKIYYD 149
Query: 354 GKLITSVQGDGLIVSTPTGSTAYAVAAGASMIHPSVPAIMVTPICPHSLSFRPIVVPAGV 413
G + + + DG+IV+TPTGST+Y+ +AG ++ P++ ++++ I P+S + +VVP+
Sbjct: 150 GHFLDTFKADGVIVATPTGSTSYSSSAGGPILLPNLEGMVISYIAPYSSRPKSVVVPSES 209
Query: 414 ELKISVSPDSRNTAWVSFDGRNRQELLHGDSLRVTTS 450
++I ++ D + + DG+ ++ GD++ ++ S
Sbjct: 210 TVEIKIAGDQSSL--LILDGQYEYKISKGDTVEISKS 244
>gnl|CDD|179456 PRK02649, ppnK, inorganic polyphosphate/ATP-NAD kinase;
Provisional.
Length = 305
Score = 113 bits (285), Expect = 4e-28
Identities = 79/237 (33%), Positives = 121/237 (51%), Gaps = 17/237 (7%)
Query: 243 IDFIICLGGDGTLLYASLLFQQSVP---PVMAFHLGSLGFLTPFEFENFEDQVTNVLEGH 299
+ F I LGGDGT+L A +Q P P++ + G LGFLT ++ + VL G
Sbjct: 69 MKFAIVLGGDGTVLSA---ARQLAPCGIPLLTINTGHLGFLTEAYLNQLDEAIDQVLAGQ 125
Query: 300 AALTLRSRLRCIIMRKNEETAKDAKPPTNILVLNEVVIDRGPSPYLSNIDLYLDGKLITS 359
+ R+ L +MR ++ +A L LNE+V+ R P + + ++ +
Sbjct: 126 YTIEERTMLTVSVMR-GDQLRWEA------LSLNEMVLHREPLTSMCHFEIAIGRHAPVD 178
Query: 360 VQGDGLIVSTPTGSTAYAVAAGASMIHPSVPAIMVTPICPHSLSFRPIVVPAGVELKISV 419
+ DG+I+STPTGSTAY+++AG +I P VP + +TPICPHSL+ R +V ++V
Sbjct: 179 IAADGVILSTPTGSTAYSLSAGGPVITPDVPVLQLTPICPHSLASRALVFSD--SEPVTV 236
Query: 420 SPDSRNTAWVSFDGRNRQELLHGDSLRVTTSIYPVPSICAQDQIADWFDSLGECLHW 476
P + + DG + D + + S YPV I QD ++F L E L W
Sbjct: 237 FPATPERLVMVVDGNAGCYVWPEDRVLIRRSPYPVRFIRLQD--PEFFRVLREKLGW 291
>gnl|CDD|235121 PRK03372, ppnK, inorganic polyphosphate/ATP-NAD kinase;
Provisional.
Length = 306
Score = 104 bits (262), Expect = 6e-25
Identities = 68/225 (30%), Positives = 114/225 (50%), Gaps = 16/225 (7%)
Query: 234 DGKDDLTDKIDFIICLGGDGTLLYASLLFQQSVPPVMAFHLGSLGFLTPFEFENFEDQVT 293
D D D + ++ LGGDGT+L A+ L + + PV+ +LG +GFL E E+ ++ V
Sbjct: 64 DADPDAADGCELVLVLGGDGTILRAAELARAADVPVLGVNLGHVGFLAEAEAEDLDEAVE 123
Query: 294 NVLEG----HAALTLRSRLRCIIMRKNEETAKDAKPPTNILVLNEVVIDRGPSPYLSNID 349
V++ +TL +R + LNE +++ + +
Sbjct: 124 RVVDRDYRVEERMTLDVTVR-----------VGGEIVWRGWALNEASLEKADREGMLEVV 172
Query: 350 LYLDGKLITSVQGDGLIVSTPTGSTAYAVAAGASMIHPSVPAIMVTPICPHSLSFRPIVV 409
L +DG+ ++S DG++VSTPTGSTAYA +AG ++ P + A++V P+ H+L RP+VV
Sbjct: 173 LEVDGRPVSSFGCDGVLVSTPTGSTAYAFSAGGPVVWPDLEALLVVPLNAHALFARPLVV 232
Query: 410 PAGVELKISVSPDSRNTAWVSFDGRNRQELLHGDSLRVTTSIYPV 454
+ + + D+ + A + DGR +L G + V PV
Sbjct: 233 SPTSTVAVEILADT-SDAVLWCDGRRSVDLPPGARVEVRRGATPV 276
>gnl|CDD|167337 PRK02231, ppnK, inorganic polyphosphate/ATP-NAD kinase;
Provisional.
Length = 272
Score = 102 bits (256), Expect = 2e-24
Identities = 84/289 (29%), Positives = 141/289 (48%), Gaps = 29/289 (10%)
Query: 192 LVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICLGG 251
L WL +E+ V VE+ + + L N ++ +++ + I +GG
Sbjct: 5 LFHWL-KERGYQVLVEKEIAEQLNLPENHLASL------------EEIGQRAQLAIVIGG 51
Query: 252 DGTLL-YASLLFQQSVPPVMAFHLGSLGFLTPFEFENFEDQVTNVLE-GHAALTLRSRLR 309
DG +L A +L + +P ++ + G+LGFLT + +N +Q+ LE G + R L
Sbjct: 52 DGNMLGRARVLAKYDIP-LIGINRGNLGFLTDIDPKNAYEQLEACLERGEFFVEERFLLE 110
Query: 310 CIIMRKNEETAKDAKPPTNILVLNEVVIDRGPSPYLSNIDLYLDGKLITSVQGDGLIVST 369
I R + A LNEVVI ++ + +Y+D K S + DGLI+ST
Sbjct: 111 AKIERNGKIIATSN-------ALNEVVIHPAKIAHMIDFHVYIDDKFAFSQRSDGLIIST 163
Query: 370 PTGSTAYAVAAGASMIHPSVPAIMVTPICPHSLSFRPIVVPAGVELKISVSPDSRNTAW- 428
PTGSTAY+++AG ++ P++ AI + P+ PH+LS RP+V+ + KIS+ NT
Sbjct: 164 PTGSTAYSLSAGGPILTPNLNAIALVPMFPHTLSSRPLVIDG--DSKISLRFAEYNTPQL 221
Query: 429 -VSFDGRNRQELLHGDSLRVTTSIYPVPSICAQDQIADWFDSLGECLHW 476
VS D + D + V S + + ++ ++++ L L W
Sbjct: 222 EVSCDSQIALPFTPDDRVHVQKSPDKLRLLHLKNY--NYYNVLSSKLGW 268
>gnl|CDD|184489 PRK14075, pnk, inorganic polyphosphate/ATP-NAD kinase; Provisional.
Length = 256
Score = 101 bits (253), Expect = 3e-24
Identities = 59/191 (30%), Positives = 96/191 (50%), Gaps = 19/191 (9%)
Query: 243 IDFIICLGGDGTLLYASLLFQQSVPPVMAFHLGSLGFLTPFEFENFEDQVTNVLEGHAAL 302
D II +GGDGT+L A+ ++ P++ F G LGFL+ + E + LE
Sbjct: 42 ADLIIVVGGDGTVLKAA---KKVGTPLVGFKAGRLGFLSSYTLEEID----RFLEDLKNW 94
Query: 303 TLRSRLRCIIMRKNEETAKDAKPPTNILVLNEVVIDRGPSPYLSNIDLYLDGKLITSVQG 362
R R + ++E A LN+V ++R PS + I++ +
Sbjct: 95 NFREEKRWFLKIESELGNHLA--------LNDVTLERDPSQKMVEIEVSFEDHSSMWFFA 146
Query: 363 DGLIVSTPTGSTAYAVAAGASMIHPSVPAIMVTPICPHSLSFRPIVVPAGVELKISVSPD 422
DG+++STPTGSTAY+++ G +I P+ +TPI P L+ R IV+P+ K++V +
Sbjct: 147 DGVVISTPTGSTAYSLSLGGPIILPNCEVFEITPIAPQFLATRSIVIPS--NEKVTV--E 202
Query: 423 SRNTAWVSFDG 433
S+ + DG
Sbjct: 203 SQRDINLIVDG 213
>gnl|CDD|235317 PRK04885, ppnK, inorganic polyphosphate/ATP-NAD kinase;
Provisional.
Length = 265
Score = 93.7 bits (234), Expect = 2e-21
Identities = 72/224 (32%), Positives = 107/224 (47%), Gaps = 32/224 (14%)
Query: 225 VKDKLMT-FRDGKDDLTDKI-DFIICLGGDGTLLYASLLFQQSVPPVMAF---HLGSLGF 279
V KL +D L +K D +I +GGDGTLL A ++ + V F H G LGF
Sbjct: 16 VASKLKKYLKDFGFILDEKNPDIVISVGGDGTLLSAFHRYENQLDKV-RFVGVHTGHLGF 74
Query: 280 LT---PFEFENFEDQVTNVLEGHAALTLRSRLRCIIMRKNEETAKDAKPPTNILVLNEVV 336
T PFE + V + + + L I ++ E K L LNE
Sbjct: 75 YTDWRPFEVDKL---VIALAKDPGQVVSYPLLEVKITYEDGEKEK-------YLALNEAT 124
Query: 337 IDRGPSPYLSNIDLYLDGKLITSVQGDGLIVSTPTGSTAYAVAAGASMIHPSVPAIMVTP 396
I R L D+Y++G L +GDGL VSTPTGSTAY + G +++HPS+ A+ +T
Sbjct: 125 IKR-IEGTLV-ADVYINGVLFERFRGDGLCVSTPTGSTAYNKSLGGAVLHPSIEALQLTE 182
Query: 397 ICPHSLS---FR----PIVVPAGVELKISVSPDSRNTAWVSFDG 433
I S++ FR P+++P I++ P + + ++ D
Sbjct: 183 IA--SINNRVFRTLGSPLILPKHH--TITLKPVNDDDYQITVDH 222
>gnl|CDD|179876 PRK04761, ppnK, inorganic polyphosphate/ATP-NAD kinase; Reviewed.
Length = 246
Score = 72.5 bits (179), Expect = 2e-14
Identities = 54/193 (27%), Positives = 92/193 (47%), Gaps = 27/193 (13%)
Query: 241 DKIDFIICLGGDGTLLYASLLFQQSVPPVMAFHLGSLGFL-TPFEFENFEDQVTNVLEGH 299
++ D I+ LGGDG +L + S PV + GS+GFL + ++ +++
Sbjct: 24 EEADVIVALGGDGFMLQTLHRYMNSGKPVYGMNRGSVGFLMNEYSEDDLLERI------A 77
Query: 300 AALTLRSRLRCIIMRKNEETAKDAKPPTNI-LVLNEVVIDRGPSPYLSNIDLYLDGKLIT 358
AA + L + M TA D + L +NEV + R + + + + +DGK+
Sbjct: 78 AAE--PTVLHPLRM-----TATDVSGEVHEALAINEVSLFRQ-TRQAAKLRISIDGKVRM 129
Query: 359 S-VQGDGLIVSTPTGSTAYAVAAGASMIHPSVPAIMVTPICPHSLSFRP-----IVVPAG 412
+ DG++V+TP GSTAY ++A ++ + +TPI P FRP ++P
Sbjct: 130 EELVCDGVLVATPAGSTAYNLSAHGPILPLGSNLLALTPISP----FRPRRWRGALLPNS 185
Query: 413 VELKISV-SPDSR 424
++ V PD R
Sbjct: 186 ATVRFDVLEPDKR 198
>gnl|CDD|100598 PRK00561, ppnK, inorganic polyphosphate/ATP-NAD kinase;
Provisional.
Length = 259
Score = 66.8 bits (163), Expect = 2e-12
Identities = 50/226 (22%), Positives = 98/226 (43%), Gaps = 25/226 (11%)
Query: 217 ATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICLGGDGTLLYASLLFQQSVPPVMAFHLGS 276
+T P V KL K + D D++ LGGDG + + + + V+ + G
Sbjct: 8 STTPQTEPVLPKLKKVLKKKLAVEDGADYLFVLGGDGFFVSTAANYNCAGCKVVGINTGH 67
Query: 277 LGFLTPFEFENFEDQVTNVLEGHAALTLRSRLRCIIMRKNEETAKDAKPPTNILVLNEVV 336
LGF T F + + N L+ +++ + ++ +++ LVLNE+
Sbjct: 68 LGFYTSFNETDLDQNFANKLDQLKF----TQIDLLEVQIDDQIH---------LVLNELA 114
Query: 337 IDRGPSPYLSNIDLYLDGKLITSVQGDGLIVSTPTGSTAYAVAAGASMIHPSVPAIMVTP 396
+ + I++++D + +G GL++ TGSTA A +A ++I P + I +
Sbjct: 115 VY---TNTAYPINIFIDNEFWEKYRGSGLLIGPRTGSTALAKSAKGAVIFPRIDVIQIIE 171
Query: 397 ICP--HSLSF----RPIVVPAGVELKISVSPDSRNTAWVSF--DGR 434
+ P H + PI++P +++ + + + F DG
Sbjct: 172 LNPLLHP-NQTTIQSPIILPIDTKVEFEIKKAFDHDQFPRFYADGA 216
>gnl|CDD|179584 PRK03501, ppnK, inorganic polyphosphate/ATP-NAD kinase;
Provisional.
Length = 264
Score = 58.8 bits (143), Expect = 1e-09
Identities = 54/219 (24%), Positives = 86/219 (39%), Gaps = 41/219 (18%)
Query: 216 LATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICLGGDGTLLYA--SLLFQQSVPPVMAFH 273
+A FTVV + I+ +GGDGT L A F++
Sbjct: 25 IAEEYGFTVVDH------------PKNANIIVSIGGDGTFLQAVRKTGFREDCLYAGIST 72
Query: 274 LGSLGFLTPFEFENFEDQVTNVLEGHAALTLRSRLRCIIMRKN---EETAKDAKPPTNIL 330
LGF F ++ + + A I +RK E T +
Sbjct: 73 KDQLGFYCDFHIDDLDKMI------QAITKEE-----IEVRKYPTIEVTVDGSTS---FY 118
Query: 331 VLNEVVIDRGPSPYLSNIDLYLDGKLITSVQGDGLIVSTPTGSTAYAVAAGASMIHPSVP 390
LNE I ID+Y+D + +GDG++VSTPTGSTAY + +++ P +P
Sbjct: 119 CLNEFSIRSSIIKTFV-IDVYIDDLHFETFRGDGMVVSTPTGSTAYNKSVRGAVVDPLIP 177
Query: 391 AIMVTPICPHSL---SFR----PIVVPAGVELKISVSPD 422
V+ + SL ++R P ++ +L + + D
Sbjct: 178 CFQVSELA--SLNNNTYRTLGSPFILSHERKLTLKIVQD 214
>gnl|CDD|215502 PLN02929, PLN02929, NADH kinase.
Length = 301
Score = 53.1 bits (128), Expect = 1e-07
Identities = 57/201 (28%), Positives = 81/201 (40%), Gaps = 52/201 (25%)
Query: 236 KDDLTDKI---DFIICLGGDGTLLYASLLFQQSVPPVMAFHLG----------------- 275
+++L+ I D ++ +GGDGTLL AS S+P LG
Sbjct: 55 RNELSQPIRDVDLVVAVGGDGTLLQASHFLDDSIPV-----LGVNSDPTQKDEVEEYSDE 109
Query: 276 -----SLGFLTPFEFENFEDQVTNVLEGHAALTLRSRLRCIIMRKNEETAKDAKPPTNIL 330
S G L E+FE + +VL G T SR+ ++ A
Sbjct: 110 FDARRSTGHLCAATAEDFEQVLDDVLFGRLKPTELSRISTVV--NGTLLETPA------- 160
Query: 331 VLNEVVIDRGPSP-YLSNIDLYL------DGKLITSVQGDGLIVSTPTGSTAYAVAAGAS 383
LN+V+I PSP +S + G LI +V+ GL VST GSTA ++AG
Sbjct: 161 -LNDVLIAH-PSPAAVSRFSFRVGRQGGSSGPLI-NVRSSGLRVSTAAGSTAAMLSAGGF 217
Query: 384 MIHPSVPAI--MV-TPICPHS 401
+ + MV PI P
Sbjct: 218 PMPLLSRDLQYMVREPISPGH 238
>gnl|CDD|107202 cd00640, Trp-synth-beta_II, Tryptophan synthase beta superfamily
(fold type II); this family of pyridoxal phosphate
(PLP)-dependent enzymes catalyzes beta-replacement and
beta-elimination reactions. This CD corresponds to
aminocyclopropane-1-carboxylate deaminase (ACCD),
tryptophan synthase beta chain (Trp-synth_B),
cystathionine beta-synthase (CBS), O-acetylserine
sulfhydrylase (CS), serine dehydratase (Ser-dehyd),
threonine dehydratase (Thr-dehyd), diaminopropionate
ammonia lyase (DAL), and threonine synthase (Thr-synth).
ACCD catalyzes the conversion of
1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate
and ammonia. Tryptophan synthase folds into a tetramer,
where the beta chain is the catalytic PLP-binding
subunit and catalyzes the formation of L-tryptophan from
indole and L-serine. CBS is a tetrameric hemeprotein
that catalyzes condensation of serine and homocysteine
to cystathionine. CS is a homodimer that catalyzes the
formation of L-cysteine from O-acetyl-L-serine.
Ser-dehyd catalyzes the conversion of L- or D-serine to
pyruvate and ammonia. Thr-dehyd is active as a homodimer
and catalyzes the conversion of L-threonine to
2-oxobutanoate and ammonia. DAL is also a homodimer and
catalyzes the alpha, beta-elimination reaction of both
L- and D-alpha, beta-diaminopropionate to form pyruvate
and ammonia. Thr-synth catalyzes the formation of
threonine and inorganic phosphate from
O-phosphohomoserine.
Length = 244
Score = 32.5 bits (75), Expect = 0.36
Identities = 9/36 (25%), Positives = 14/36 (38%)
Query: 363 DGLIVSTPTGSTAYAVAAGASMIHPSVPAIMVTPIC 398
D ++V G +A + P+V I V P
Sbjct: 155 DAVVVPVGGGGNIAGIARALKELLPNVKVIGVEPEV 190
>gnl|CDD|224513 COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic
diacylglycerol kinase [Lipid metabolism / General
function prediction only].
Length = 301
Score = 31.9 bits (73), Expect = 0.63
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 236 KDDLTDKIDFIICLGGDGTL 255
++ + D +I GGDGT+
Sbjct: 52 REAAVEGYDTVIAAGGDGTV 71
>gnl|CDD|216246 pfam01017, STAT_alpha, STAT protein, all-alpha domain. STAT
proteins (Signal Transducers and Activators of
Transcription) are a family of transcription factors
that are specifically activated to regulate gene
transcription when cells encounter cytokines and growth
factors. STAT proteins also include an SH2 domain
pfam00017.
Length = 182
Score = 30.4 bits (69), Expect = 1.4
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 461 DQIADWFDSLGECLHWNVRKRQKHLDELS-DLTHSSS--NDTLDSLEHTDQIDS 511
DQ+ +WF +L E L + +R++ K L+EL LT+ L +++
Sbjct: 124 DQLQNWFTALAESL-FQLRQQLKKLEELRQKLTYEGDPITKGRPQLN--ERVTE 174
>gnl|CDD|224371 COG1454, EutG, Alcohol dehydrogenase, class IV [Energy production
and conversion].
Length = 377
Score = 30.3 bits (69), Expect = 2.7
Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 6/33 (18%)
Query: 219 NPSFTVVKDKLMTFRDGKDDLTDKIDFIICLGG 251
P+ V+ R+ D II LGG
Sbjct: 69 EPTIETVEAGAEVAREFG------PDTIIALGG 95
>gnl|CDD|215346 PLN02643, PLN02643, ADP-glucose phosphorylase.
Length = 336
Score = 30.1 bits (68), Expect = 3.0
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 380 AGASMIHPSVPAIMVTPICPHSLSFR 405
AGASM H S I+ P+ P S+S R
Sbjct: 162 AGASMSH-SHSQIIALPVVPPSVSAR 186
>gnl|CDD|213713 TIGR02482, PFKA_ATP, 6-phosphofructokinase. 6-phosphofructokinase
(EC 2.7.1.11) catalyzes the addition of phosphate from
ATP to fructose 6-phosphate to give fructose
1,6-bisphosphate. This represents a key control step in
glycolysis. This model hits bacterial ATP-dependent
6-phosphofructokinases which lack a beta-hairpin loop
present in TIGR02483 family members. TIGR02483 contains
members that are ATP-dependent as well as members that
are pyrophosphate-dependent. TIGR02477 represents the
pyrophosphate-dependent phosphofructokinase,
diphosphate--fructose-6-phosphate 1-phosphotransferase
(EC 2.7.1.90) [Energy metabolism,
Glycolysis/gluconeogenesis].
Length = 301
Score = 29.6 bits (67), Expect = 3.8
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 243 IDFIICLGGDGTLLYASLLFQQSVPPVMA 271
I+ ++ +GGDG+ A L+++ PV+
Sbjct: 92 IEGLVVIGGDGSYTGAQKLYEEGGIPVIG 120
>gnl|CDD|183607 PRK12579, PRK12579, putative monovalent cation/H+ antiporter
subunit B; Reviewed.
Length = 258
Score = 29.3 bits (66), Expect = 3.8
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 5/31 (16%)
Query: 447 VTTSIYPVPS-ICAQDQIADW--FDSLGECL 474
V Y VP+ + A + DW FD+LGECL
Sbjct: 36 VYLQNYIVPNLVTAV--LFDWRAFDTLGECL 64
>gnl|CDD|153230 cd03136, GATase1_AraC_ArgR_like, AraC transcriptional regulators
having an N-terminal Type 1 glutamine amidotransferase
(GATase1)-like domain. A subgroup of AraC
transcriptional regulators having an N-terminal Type 1
glutamine amidotransferase (GATase1)-like domain. This
group contains proteins similar to the Pseudomonas
aeruginosa ArgR regulator. ArgR functions in the
control of expression of certain genes of arginine
biosynthesis and catabolism. AraC regulators are defined
by a AraC-type helix-turn-helix DNA binding domain at
their C-terminal. AraC family transcriptional
regulators are widespread among bacteria and are
involved in regulating diverse and important biological
functions, including carbon metabolism, stress responses
and virulence in different microorganisms. The catalytic
triad typical of GATase1 domains is not conserved in
this GATase1-like domain. However, in common with
typical GATase1domains a reactive cys residue is found
in some sequences in the sharp turn between a beta
strand and an alpha helix termed the nucleophile elbow.
Length = 185
Score = 29.1 bits (66), Expect = 4.4
Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 6/66 (9%)
Query: 36 LIRQQSSGFRLTGNASCSSAVSR-GQLKEY-----WTHSNQFRRHYRDSDCDSGIFSVAG 89
L R G L G + + ++R G L W H F + +F + G
Sbjct: 88 LRRAARRGVALGGIDTGAFLLARAGLLDGRRATVHWEHLEAFAEAFPRVQVTRDLFEIDG 147
Query: 90 DAMTSS 95
D +T +
Sbjct: 148 DRLTCA 153
>gnl|CDD|218698 pfam05695, DUF825, Plant protein of unknown function (DUF825).
This family consists of several plant proteins greater
than 1000 residues in length. The function of this
family is unknown.
Length = 1127
Score = 29.5 bits (66), Expect = 5.2
Identities = 14/59 (23%), Positives = 25/59 (42%)
Query: 287 NFEDQVTNVLEGHAALTLRSRLRCIIMRKNEETAKDAKPPTNILVLNEVVIDRGPSPYL 345
NFE Q+ G+ L R+ ++ I R + K K + + + I+R + Y
Sbjct: 408 NFEYQIQRDQIGNETLNHRTLMKYTIKRHSSSWKKSQKEWFDPSIFTDKSINRNLNAYR 466
>gnl|CDD|233257 TIGR01064, pyruv_kin, pyruvate kinase. This enzyme is a
homotetramer. Some forms are active only in the presence
of fructose-1,6-bisphosphate or similar phosphorylated
sugars [Energy metabolism, Glycolysis/gluconeogenesis].
Length = 473
Score = 29.2 bits (66), Expect = 5.8
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
Query: 365 LIVSTPTGSTAYAVAAGASMIHPSVPAIMVTP 396
++V T +G TA + S P+ P I VTP
Sbjct: 377 IVVLTESGRTARLL----SKYRPNAPIIAVTP 404
>gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain,
uncharacterized subfamily 5. gap in seq This family is
a member of the Peptidases S8 or Subtilases serine endo-
and exo-peptidase clan. They have an Asp/His/Ser
catalytic triad similar to that found in trypsin-like
proteases, but do not share their three-dimensional
structure and are not homologous to trypsin. The
stability of subtilases may be enhanced by calcium, some
members have been shown to bind up to 4 ions via binding
sites with different affinity. Some members of this clan
contain disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 312
Score = 28.7 bits (65), Expect = 7.8
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 364 GLIVST-PTGSTAYAVAAGASMIHPSVPAI 392
G I+ST P YAV +G SM P V
Sbjct: 211 GNILSTYPLAGGGYAVLSGTSMATPYVAGA 240
>gnl|CDD|233887 TIGR02483, PFK_mixed, phosphofructokinase. Members of this family
that are characterized, save one, are
phosphofructokinases dependent on pyrophosphate (EC
2.7.1.90) rather than ATP (EC 2.7.1.11). The exception
is one of three phosphofructokinases from Streptomyces
coelicolor. Family members are both bacterial and
archaeal [Energy metabolism,
Glycolysis/gluconeogenesis].
Length = 324
Score = 28.8 bits (65), Expect = 7.9
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Query: 232 FRDGKDDLTDK-----IDFIICLGGDGTLLYASLLFQQSVPPV 269
DG D + +D +I +GGDGTL A L + +P V
Sbjct: 79 EEDGDDKIVANLKELGLDALIAIGGDGTLGIARRLADKGLPVV 121
>gnl|CDD|237569 PRK13952, mscL, large-conductance mechanosensitive channel;
Provisional.
Length = 142
Score = 27.5 bits (62), Expect = 8.8
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 313 MRKNEETAKDAKPPTNILVLNEV 335
+R+ EE A PP ++++L E+
Sbjct: 112 LRRKEEAAPPPAPPEDVVLLREI 134
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.133 0.399
Gapped
Lambda K H
0.267 0.0596 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 25,626,517
Number of extensions: 2458092
Number of successful extensions: 1934
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1892
Number of HSP's successfully gapped: 43
Length of query: 511
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 410
Effective length of database: 6,457,848
Effective search space: 2647717680
Effective search space used: 2647717680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.6 bits)