RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5950
(511 letters)
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase;
2.70A {Homo sapiens}
Length = 365
Score = 472 bits (1216), Expect = e-165
Identities = 227/364 (62%), Positives = 278/364 (76%), Gaps = 20/364 (5%)
Query: 135 PSPIQQFGPCGRIMKNSAMVMTIQDPASQRLTWYKPPLTVLVIKKVRDVSVLQPFVKLVK 194
P P+ FGP +++N +M IQDPASQRLTW K P +VLVIKK+RD S+LQPF +L
Sbjct: 2 PCPVTTFGPKACVLQNPQTIMHIQDPASQRLTWNKSPKSVLVIKKMRDASLLQPFKELCT 61
Query: 195 WLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLTDKIDFIICLGGDGT 254
L E++M+VYVE+ V++D +A++ SF VK K TFR+ DD++++IDFIICLGGDGT
Sbjct: 62 HL-MEENMIVYVEKKVLEDPAIASDESFGAVKKKFCTFREDYDDISNQIDFIICLGGDGT 120
Query: 255 LLYASLLFQQSVPPVMAFHLGSLGFLTPFEFENFEDQVTNVLEGHAALTLRSRLRCIIMR 314
LLYAS LFQ SVPPVMAFHLGSLGFLTPF FENF+ QVT V+EG+AA+ LRSRL+ +++
Sbjct: 121 LLYASSLFQGSVPPVMAFHLGSLGFLTPFSFENFQSQVTQVIEGNAAVVLRSRLKVRVVK 180
Query: 315 KNEET-------------------AKDAKPPTNILVLNEVVIDRGPSPYLSNIDLYLDGK 355
+ K VLNEVVIDRGPS YLSN+D+YLDG
Sbjct: 181 ELRGKKTAVHNGLGEKGSQAAGLDMDVGKQAMQYQVLNEVVIDRGPSSYLSNVDVYLDGH 240
Query: 356 LITSVQGDGLIVSTPTGSTAYAVAAGASMIHPSVPAIMVTPICPHSLSFRPIVVPAGVEL 415
LIT+VQGDG+IVSTPTGSTAYA AAGASMIHP+VPAIM+TPICPHSLSFRPIVVPAGVEL
Sbjct: 241 LITTVQGDGVIVSTPTGSTAYAAAAGASMIHPNVPAIMITPICPHSLSFRPIVVPAGVEL 300
Query: 416 KISVSPDSRNTAWVSFDGRNRQELLHGDSLRVTTSIYPVPSICAQDQIADWFDSLGECLH 475
KI +SP++RNTAWVSFDGR RQE+ HGDS+ +TTS YP+PSIC +D ++DWF+SL +CLH
Sbjct: 301 KIMLSPEARNTAWVSFDGRKRQEIRHGDSISITTSCYPLPSICVRDPVSDWFESLAQCLH 360
Query: 476 WNVR 479
+
Sbjct: 361 HHHH 364
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding,
mitochondrion NADP, nucleotide-binding, transferase,
transit peptide; HET: NAI; 2.00A {Saccharomyces
cerevisiae}
Length = 388
Score = 419 bits (1080), Expect = e-145
Identities = 110/395 (27%), Positives = 192/395 (48%), Gaps = 43/395 (10%)
Query: 132 LNAPSPIQQFGPCGRIMKNSAMVMTIQDPAS--QRLTWYKPPLTVLVIKKVRDVSVLQPF 189
L + S + P +++S+ + P S Q L W P V + KK S +
Sbjct: 1 LQSGSKFVKIKPVNN-LRSSSSADFVSPPNSKLQSLIWQNPLQNVYITKKPWTPSTREAM 59
Query: 190 VKLVKWLIQE-KSMLVYVEQSVMDDTLLATNPSFTVVKDKL-MTFRDGKDDLTDKIDFII 247
V+ + L + + V V+ V ++ ++ + + + D+ ++ D ++
Sbjct: 60 VEFITHLHESYPEVNVIVQPDVAEEISQDFKSPLENDPNRPHILYTGPEQDIVNRTDLLV 119
Query: 248 CLGGDGTLLYASLLFQQS-VPPVMAFHLGSLGFLTPFEFENFEDQVTNVLEGHAALTLRS 306
LGGDGT+L+ +F + VPPV+AF LG+LGFL+PF+F+ + V+ A R+
Sbjct: 120 TLGGDGTILHGVSMFGNTQVPPVLAFALGTLGFLSPFDFKEHKKVFQEVISSRAKCLHRT 179
Query: 307 RLRCIIMRKNEETAKDAKPPTNILVLNEVVIDRGPSPYLSNIDLYLDGKLITSVQGDGLI 366
RL C + +K+ ++ +N++ + RG SP+L+N+D+++DG+ +T DG+
Sbjct: 180 RLECHLKKKDSNSSIVT------HAMNDIFLHRGNSPHLTNLDIFIDGEFLTRTTADGVA 233
Query: 367 VSTPTGSTAYAVAAGASMIHPSVPAIMVTPICPHSLSFRPIVVPAGVELKISVSP----- 421
++TPTGSTAY+++AG S++ P VPAI++TPICP SLSFRP+++P ++I +
Sbjct: 234 LATPTGSTAYSLSAGGSIVSPLVPAILMTPICPRSLSFRPLILPHSSHIRIKIGSKLNQK 293
Query: 422 DSRNTAWVSFDGRNRQELLHGDSLRVTTSI-------YPVPSI----------------- 457
+ +S DG +Q+L GD + V + +P+
Sbjct: 294 PVNSVVKLSVDGIPQQDLDVGDEIYVINEVGTIYIDGTQLPTTRKTENDFNNSKKPKRSG 353
Query: 458 --CAQDQIADWFDSLGECLHWNVRKRQKHLDELSD 490
C DW + E L +N R +D
Sbjct: 354 IYCVAKTENDWIRGINELLGFNSSFRLTKRQTDND 388
>2an1_A Putative kinase; structural genomics, PSI, protein structure
initiative, midwest center for structural genomics,
MCSG, transferase; 2.00A {Salmonella typhimurium}
Length = 292
Score = 251 bits (644), Expect = 2e-80
Identities = 80/307 (26%), Positives = 150/307 (48%), Gaps = 23/307 (7%)
Query: 173 TVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTF 232
+ ++ R + L L +WL ++ V VEQ + + L P+ T+
Sbjct: 7 CIGIVGHPRHPTALTTHEMLYRWL-CDQGYEVIVEQQIAHELQLKNVPTGTL-------- 57
Query: 233 RDGKDDLTDKIDFIICLGGDGTLLYASLLFQQSVPPVMAFHLGSLGFLTPFEFENFEDQV 292
++ + D + +GGDG +L A+ + V+ + G+LGFLT + +N Q+
Sbjct: 58 ----AEIGQQADLAVVVGGDGNMLGAARTLARYDINVIGINRGNLGFLTDLDPDNALQQL 113
Query: 293 TNVLEGHAALTLRSRLRCIIMRKNEETAKDAKPPTNILVLNEVVIDRGPSPYLSNIDLYL 352
++VLEG R L + +++ + +NEVV+ G ++ ++Y+
Sbjct: 114 SDVLEGRYISEKRFLLEAQVCQQDRQKRIS-------TAINEVVLHPGKVAHMIEFEVYI 166
Query: 353 DGKLITSVQGDGLIVSTPTGSTAYAVAAGASMIHPSVPAIMVTPICPHSLSFRPIVVPAG 412
D S + DGLI+STPTGSTAY+++AG ++ PS+ AI + P+ PH+LS RP+V+ +
Sbjct: 167 DETFAFSQRSDGLIISTPTGSTAYSLSAGGPILTPSLDAITLVPMFPHTLSARPLVINSS 226
Query: 413 VELKISVSPDSRNTAWVSFDGRNRQELLHGDSLRVTTSIYPVPSICAQDQIADWFDSLGE 472
+++ R+ +S D + + G+ + + Y + I +D +F++L
Sbjct: 227 STIRLRF-SHRRSDLEISCDSQIALPIQEGEDVLIRRCDYHLNLIHPKDY--SYFNTLST 283
Query: 473 CLHWNVR 479
L W+ +
Sbjct: 284 KLGWSKK 290
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich,
structural genomics, PSI, protein structure initiative;
2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB:
1u0r_A 1y3i_A* 1y3h_A
Length = 307
Score = 239 bits (612), Expect = 2e-75
Identities = 80/307 (26%), Positives = 133/307 (43%), Gaps = 10/307 (3%)
Query: 173 TVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTF 232
+VL++ + ++ K L K L + +D L P +
Sbjct: 6 SVLLVVHTGRDEATETARRVEKVLGDNKIALRVLSAEAVDRGSLHLAPDDMRAMGVEIEV 65
Query: 233 RDGKDDLTDKIDFIICLGGDGTLLYASLLFQQSVPPVMAFHLGSLGFLTPFEFENFEDQV 292
D D + ++ LGGDGT L A+ L + + PV+ +LG +GFL E E + +
Sbjct: 66 VDADQHAADGCELVLVLGGDGTFLRAAELARNASIPVLGVNLGRIGFLAEAEAEAIDAVL 125
Query: 293 TNVLEGHAALTLRSRLRCIIMRKNEETAKDAKPPTNILVLNEVVIDRGPSPYLSNIDLYL 352
+V+ + R L ++ + + LNEV +++GP + + + +
Sbjct: 126 EHVVAQDYRVEDRLTLDVVVRQGGRIVNRG-------WALNEVSLEKGPRLGVLGVVVEI 178
Query: 353 DGKLITSVQGDGLIVSTPTGSTAYAVAAGASMIHPSVPAIMVTPICPHSLSFRPIVVPAG 412
DG+ +++ DG++VSTPTGSTAYA +AG ++ P + AI+V P H+L RP+V
Sbjct: 179 DGRPVSAFGCDGVLVSTPTGSTAYAFSAGGPVLWPDLEAILVVPNNAHALFGRPMVTSPE 238
Query: 413 VELKISVSPDSRNTAWVSFDGRNRQELLHGDSLRVTTSIYPVPSICAQDQIADWFDSLGE 472
+ I + D + A V DGR + G L VT + V + D L
Sbjct: 239 ATIAIEIEADGHD-ALVFCDGRREMLIPAGSRLEVTRCVTSVKWARLDSA--PFTDRLVR 295
Query: 473 CLHWNVR 479
V
Sbjct: 296 KFRLPVT 302
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta
domain2: beta sandwich, structural genomics, PSI,
protein structure initiative; 2.30A {Thermotoga
maritima}
Length = 258
Score = 219 bits (560), Expect = 2e-68
Identities = 56/252 (22%), Positives = 107/252 (42%), Gaps = 22/252 (8%)
Query: 228 KLMTFRDGKDDLTDKIDFIICLGGDGTLLYASLLFQQSVPPVMAFHLGSLGFLTPFEFEN 287
+++ F + D I+ +GGDGT+L A+ P ++ F G LGFLT + +
Sbjct: 27 EVIEFGEANAPGRVTADLIVVVGGDGTVLKAAKKAADGTP-MVGFKAGRLGFLTSYTLDE 85
Query: 288 FEDQVTNVLEGHAALTLRSRLRCIIMRKNEETAKDAKPPTNILVLNEVVIDRGPSPYLSN 347
+ + ++ + R ++ N L LN+V ++R S +
Sbjct: 86 IDRFLEDLRNWNFREETRWFIQIESELGNH------------LALNDVTLERDLSGKMVE 133
Query: 348 IDLYLDGKLITSVQGDGLIVSTPTGSTAYAVAAGASMIHPSVPAIMVTPICPHSLSFRPI 407
I++ ++ DG+++STPTGSTAY+++ G +I P + ++PI P R +
Sbjct: 134 IEVEVEHHSSMWFFADGVVISTPTGSTAYSLSIGGPIIFPECEVLEISPIAPQFFLTRSV 193
Query: 408 VVPAGVELKISVSPDSRNTAWVSFDGRNRQELLHGDSLRVTTSIYPVPSICAQDQIADWF 467
V+P+ ++ + D + DG + V S V + + D+
Sbjct: 194 VIPSNFKVVVESQRD----INMLVDG---VLTGKTKRIEVKKSRRYVRILRPPEY--DYV 244
Query: 468 DSLGECLHWNVR 479
+ + L + R
Sbjct: 245 TVIRDKLGYGRR 256
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding,
structural genomics, NADP, PSI, protein structure
initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus}
SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Length = 278
Score = 201 bits (514), Expect = 3e-61
Identities = 56/243 (23%), Positives = 103/243 (42%), Gaps = 26/243 (10%)
Query: 234 DGKDDLTDKIDFIICLGGDGTLLYASLLFQQSVPPVMAFHLGSLGFLTPFEFENFEDQVT 293
+ + + DFI+ +GGDGT+L ++ P + + G +G LT ENFE ++
Sbjct: 60 NQPSEELENFDFIVSVGGDGTILRILQKLKRCPP-IFGINTGRVGLLTHASPENFEVELK 118
Query: 294 NVLEGHAALTLRSRLRCIIMRKNEETAKDAKPPTNILVLNEVVIDRGPSPYLSNIDLYLD 353
+E + R+ C M L LNE+ + + ++ L +D
Sbjct: 119 KAVEKFE-VERFPRVSCSAMPDV-------------LALNEIAVLSRKPAKMIDVALRVD 164
Query: 354 GKLITSVQGDGLIVSTPTGSTAYAVAAGASMIHPSVPAIMVTPICPHSLSFRPIVVPAGV 413
G + ++ DG IV+T GST YA +AG ++ P + ++ PI P ++P VV
Sbjct: 165 GVEVDRIRCDGFIVATQIGSTGYAFSAGGPVVEPYLECFILIPIAPFRFGWKPYVVSMER 224
Query: 414 ELKISVSPDSRNTAWVSFDGRNRQELLHGDSLRVTTSIYPVPSICAQDQIADWFDSLGEC 473
++++ A V DG ++ + + + S +P + F +L
Sbjct: 225 KIEVIAEK-----AIVVADG--QKSVDFDGEITIEKSEFPAVFF----KNEKRFRNLFGK 273
Query: 474 LHW 476
+
Sbjct: 274 VRS 276
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of
lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria
monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A*
2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A*
3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A*
3v8r_A*
Length = 272
Score = 198 bits (506), Expect = 3e-60
Identities = 48/257 (18%), Positives = 96/257 (37%), Gaps = 20/257 (7%)
Query: 235 GKDDLTDKIDFIICLGGDGTLLYAS--LLFQQSVPPVMAFHLGSLGFLTPFEFENFEDQV 292
+ + + +I +GGDGT L A + + H G LGF + + V
Sbjct: 28 DMEYDDVEPEIVISIGGDGTFLSAFHQYEERLDEIAFIGIHTGHLGFYADWRPAEADKLV 87
Query: 293 TNVLEGHAALTLRSRLRCIIMRKNEETAKDAKPPTNILVLNEVVIDRGPSPYLSNIDLYL 352
+ +G L+ + + L LNE + P++ +D+ +
Sbjct: 88 KLLAKGEYQKVSYPLLKTTVKYGIGK------KEATYLALNESTVKSSGGPFV--VDVVI 139
Query: 353 DGKLITSVQGDGLIVSTPTGSTAYAVAAGASMIHPSVPAIMVTPICP-----HSLSFRPI 407
+ +GDGL +STP+G+TAY + G +++HPS+ A+ +T + + P+
Sbjct: 140 NDIHFERFRGDGLCMSTPSGTTAYNKSLGGALMHPSIEAMQLTEMASINNRVYRTIGSPL 199
Query: 408 VVPAGVELKISVSPDSRNTAWVSFDGRNRQELLHGDSLRVTTSIYPVPSICAQDQIADWF 467
V P + + D +S D + +R S + + ++
Sbjct: 200 VFPKHHVVSLQPVND--KDFQISVDHLSI-LHRDVQEIRYEVSAKKIHFARFRSF--PFW 254
Query: 468 DSLGECLHWNVRKRQKH 484
+ + ++ H
Sbjct: 255 RRVHDSFIEDLEHHHHH 271
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 61.6 bits (149), Expect = 4e-10
Identities = 103/602 (17%), Positives = 180/602 (29%), Gaps = 216/602 (35%)
Query: 2 VSTSD--TYSESNDDVRFYDCLN---GGMMVGDE-SHLPHLIRQQSSGFRLTGNASCSSA 55
V T+ S+ + F L G DE + L+ + G+ SS
Sbjct: 22 VPTASFFIASQLQEQ--FNKILPEPTEGFAADDEPTTPAELV-GKFLGY-------VSSL 71
Query: 56 VSRGQLKEYW----THSNQFRRHY-RDSDCDSGIFSVAGDAMTSSTSNDSTLDSHLLIEP 110
V ++ ++ +F Y +D I ++A ND+TL +
Sbjct: 72 VEPSKVGQFDQVLNLCLTEFENCYLEGND----IHALAA---KLLQENDTTLVKTKEL-- 122
Query: 111 EPESIWTSYRQRSGSWPRTRSLNAPSPIQQFGPCGRIMKNSAMVMTI---QDPASQ---- 163
I R + R + S + + + + +A ++ I Q
Sbjct: 123 ----IKNYITARIMA-KRPFDKKSNSALFR-----AVGEGNAQLVAIFGGQGNTDDYFEE 172
Query: 164 -RLTW--YKPPLTVLVIKKVRDVSVLQPFVK--------------LVKWLIQEKSMLVYV 206
R + Y + L IK + L ++ +++WL + S
Sbjct: 173 LRDLYQTYHVLVGDL-IKFSAET--LSELIRTTLDAEKVFTQGLNILEWL-ENPS----- 223
Query: 207 EQSVMDDTLLATNP-SFTVVKDKLMTFRDGKDDLTDKIDFII-C--LGGD-GTL---LYA 258
+ D L + P S ++ G + +++ LG G L L
Sbjct: 224 --NTPDKDYLLSIPISCPLI---------G---VIQLAHYVVTAKLLGFTPGELRSYLKG 269
Query: 259 SLLFQQSVPPVMAFHLGSLGFLTPFEFENFEDQVTNVLE-----GHAALTLRSRLRCIIM 313
+ Q + V A + +E+F V + G +RC
Sbjct: 270 ATGHSQGL--VTAVAIAETD-----SWESFFVSVRKAITVLFFIG---------VRC--- 310
Query: 314 RKNEETAKDAKPPTNI---LVLNEVVIDRG-PSPYLS----------------NIDLYLD 353
+A P T++ ++ + + + G PSP LS N L
Sbjct: 311 -------YEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAG 363
Query: 354 GKL-ITSVQG-DGLIVSTPTGS------TAYAVAAGASMIHPSVPAIMVTPICPHSLSFR 405
++ I+ V G L+VS P S T A + + +P S F
Sbjct: 364 KQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKF--SNRFL 421
Query: 406 PIVVP------------------------AGVELKISVSPDSRNTAWVSFDGRNRQELLH 441
P+ P +++I V +T FDG + + L
Sbjct: 422 PVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPV----YDT----FDGSDLRVL-- 471
Query: 442 GDSLRVTTSIYPVPSICAQDQIADWFDSLGECLHW--NVRKRQKH-LD-------ELSDL 491
+ SI I D I + + W + + H LD L L
Sbjct: 472 ------SGSI--SERIV--DCI------IRLPVKWETTTQFKATHILDFGPGGASGLGVL 515
Query: 492 TH 493
TH
Sbjct: 516 TH 517
Score = 41.2 bits (96), Expect = 8e-04
Identities = 47/273 (17%), Positives = 73/273 (26%), Gaps = 76/273 (27%)
Query: 254 TLLYASLLFQQSVPPVMAFHLGSL--GFL----TPFEFENFEDQVTNVLEGHAALTLRSR 307
TL + SL VP F L F P E +D+ T E L +
Sbjct: 10 TLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAE------LVGK 63
Query: 308 LRCIIMRKNEETAKDAKPPTNILVLNEVVIDRGPSPYLSNIDLY-----LDGKLITSVQG 362
+ E + L L E + YL D++ L + T++
Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLNLCLTE--FENC---YLEGNDIHALAAKLLQENDTTLVK 118
Query: 363 DGLIVSTPTGSTAYAVAAGASMIHPSVPAIMVTPICPHSLSFRPIVVPAGVELKISVSPD 422
++ Y + A P +S FR V G ++
Sbjct: 119 TKELI------KNY-ITARIMAKRPFDKK-------SNSALFR--AVGEG-NAQL----- 156
Query: 423 SRNTAWVSFDGR-NRQELLHGDSLRVTTSIYPVPSICAQDQIADWFDSLGECLHWNVRKR 481
F G+ N + + LR Y + D E
Sbjct: 157 -----VAIFGGQGNTDDYF--EELRDLYQTYH-------VLVGDLIKFSAE--------- 193
Query: 482 QKHLDELSDLTHSSSN------DTLDSLEHTDQ 508
L EL T + + L+ LE+
Sbjct: 194 --TLSELIRTTLDAEKVFTQGLNILEWLENPSN 224
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 56.8 bits (136), Expect = 1e-08
Identities = 47/354 (13%), Positives = 98/354 (27%), Gaps = 100/354 (28%)
Query: 56 VSRGQLKEYWTHSNQFRRHYRDSDCDSGIFSVAGDA------MTSSTSNDSTLDSHLLIE 109
VSR Q + R+ + + + G + + +
Sbjct: 131 VSRLQPY------LKLRQALLELRPAKNVL-IDGVLGSGKTWVALDVCLSYKVQCKM--- 180
Query: 110 PEPESI-WTSYRQRSGSWPRTRSLNAPSPIQQFGPCGRIMKNSAMVMTIQDPASQRLTWY 168
I W + + + ++ +Q+ +I N R+
Sbjct: 181 --DFKIFWLNLKNCN----SPETV--LEMLQKL--LYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 169 KPPLTVLVIKK-----------VRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLA 217
+ L L+ K V++ F + K +L + V D L A
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQNAKAWNAF------NLSCKILLTTRFKQVTDF-LSA 283
Query: 218 TNPSFTVVKDKLMTFRDGKDDLTDKIDFIICLGGDGTLLYASLLFQQSVPPVMA----FH 273
+ + MT D + + L Q +P +
Sbjct: 284 ATTTHISLDHHSMTL---TPDEVKSL-LLKYLDCR----------PQDLPREVLTTNPRR 329
Query: 274 LGSLGFLT---PFEFENFE----DQVTNVLEGH-AALT---LRSRLR-CIIMRKNEETAK 321
L + ++N++ D++T ++E L R +
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP------P 383
Query: 322 DAKPPTNIL--------------VLNEVV----IDRGPSPYLSNI-DLYLDGKL 356
A PT +L V+N++ +++ P +I +YL+ K+
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437
Score = 41.0 bits (95), Expect = 0.001
Identities = 62/417 (14%), Positives = 123/417 (29%), Gaps = 113/417 (27%)
Query: 14 DVRFYDCLNGG---MMVGDESHLPH--LIRQQSSGFRLTGNASCSSAVSRGQLKEYWTHS 68
+ ++ + + + P L Q +++ N + S + HS
Sbjct: 173 SYKVQCKMDFKIFWLNLK-NCNSPETVLEMLQKLLYQIDPNWT--SRSDHSSNIKLRIHS 229
Query: 69 --NQFRRH-----YRDS----D--CDSGIF----------------SVAGDAMTSSTSND 99
+ RR Y + ++ + V D ++++T+
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT-DFLSAATTTH 288
Query: 100 STLDSHL--LIEPEPESIWTSY-RQRSGSWPRTRSLNAPSPIQQFGPCGRIMKN------ 150
+LD H L E +S+ Y R PR P + R
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK 348
Query: 151 ----SAMVMTIQ------DPASQRLTWYK-----P-----PLTVLVI----KKVRDV-SV 185
+ I+ +PA R + P P +L + DV V
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYR-KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV 407
Query: 186 LQPFVK---LVKWLIQEKSML--VYVEQSVMDDTLLATNPSFTVVKDKLMTFRDGKDDLT 240
+ K + K + + +Y+E V + A + S V + D D +
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI-VDHYNIPKTFDSDDLIP 466
Query: 241 DKID-----FI------ICLGGDGTL---LYASLLF-QQSV---------PPVMAFHLGS 276
+D I I TL ++ F +Q + + L
Sbjct: 467 PYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ 526
Query: 277 LGFLTPF------EFENFEDQVTNVLEGHAALTLRSRLRCII----MRKNEETAKDA 323
L F P+ ++E + + + L + S+ ++ M ++E ++A
Sbjct: 527 LKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEA 583
Score = 32.1 bits (72), Expect = 0.48
Identities = 33/258 (12%), Positives = 70/258 (27%), Gaps = 90/258 (34%)
Query: 279 FLTPFEFENFEDQVTNVL----------EGHAALTLRSRLRCIIMRKNEETAKDA----- 323
F+ F+ ++ +D ++L A RL ++ K EE +
Sbjct: 29 FVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL-RLFWTLLSKQEEMVQKFVEEVL 87
Query: 324 KPPTNILVLNEVVIDRGPSPYLSNIDLYLD--GKLITSVQGDGLIVSTPTGSTAYAVAAG 381
+ L+ R PS +Y++ +L Q
Sbjct: 88 RINYKFLMSPIKTEQRQPSM---MTRMYIEQRDRLYNDNQ-------------------- 124
Query: 382 ASMIHPSVPAIMVTPICPHSLSFRPIVVPAGVELKISVSPDSRNTAWVSFDGRNRQELLH 441
+++S R ++L+ ++ R V L+
Sbjct: 125 --------------VFAKYNVS-RLQPY---LKLRQALLEL-RPAKNV---------LID 156
Query: 442 GD------SLRVTTSIYPVPSICAQDQIADWFDSLGECLHW-NVRKRQKH---LDELSDL 491
G + +C ++ D + W N++ L+ L L
Sbjct: 157 GVLGSGKTWV--------ALDVCLSYKVQCKMDF---KIFWLNLKNCNSPETVLEMLQKL 205
Query: 492 THSSSNDTLDSLEHTDQI 509
+ + +H+ I
Sbjct: 206 LYQIDPNWTSRSDHSSNI 223
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 30.8 bits (69), Expect = 0.66
Identities = 4/12 (33%), Positives = 8/12 (66%)
Query: 330 LVLNEVVIDRGP 341
LVL++ ++D
Sbjct: 50 LVLSDKLVDTRS 61
>3s40_A Diacylglycerol kinase; structural genomics, the center for
structural genomics of infectious diseases, csgid,
transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Length = 304
Score = 31.1 bits (71), Expect = 0.72
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 238 DLTDKIDFIICLGGDGTL 255
+ K+D II GGDGT+
Sbjct: 59 EFASKVDLIIVFGGDGTV 76
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP;
2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Length = 320
Score = 31.3 bits (72), Expect = 0.75
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 242 KIDFIICLGGDGTLLYASLLFQQSVPPV 269
ID ++ +GGDG+ + A L + P +
Sbjct: 94 GIDALVVIGGDGSYMGAMRLTEMGFPCI 121
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei}
PDB: 3f5m_A*
Length = 487
Score = 31.2 bits (71), Expect = 0.95
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 242 KIDFIICLGGDGTLLYASLLFQQ 264
++ + +GGDGT A ++ Q+
Sbjct: 189 GVNILFTVGGDGTQRGALVISQE 211
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A
{Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A*
1mto_A*
Length = 319
Score = 30.9 bits (71), Expect = 0.96
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 242 KIDFIICLGGDGTLLYASLLFQQSVPPV 269
I+ ++ +GGDG+ + A L + P V
Sbjct: 93 GIEGLVVIGGDGSYMGAKKLTEHGFPCV 120
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU
transferase; 1.85A {Lactobacillus delbrueckii subsp}
Length = 319
Score = 30.9 bits (71), Expect = 1.1
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 242 KIDFIICLGGDGTLLYASLLFQQSVPPV 269
ID ++ +GGDG+ A L + +
Sbjct: 93 GIDAVVVIGGDGSYHGALQLTRHGFNSI 120
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich
domain 2, protein-ADP COM transferase; HET: ADP; 2.30A
{Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Length = 337
Score = 30.4 bits (69), Expect = 1.4
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 236 KDDLTDKIDFIICLGGDGTL 255
+ + + D +I GGDGTL
Sbjct: 74 ERAMHENYDVLIAAGGDGTL 93
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli}
SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Length = 332
Score = 29.2 bits (66), Expect = 3.1
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 241 DKIDFIICLGGDGTL 255
+ +I GGDGT+
Sbjct: 81 FGVATVIAGGGDGTI 95
>3okg_A Restriction endonuclease S subunits; coiled-coil, type I
methyltransferase, DNA binding, DNA BIND protein; 1.95A
{Thermoanaerobacter tengcongensis}
Length = 412
Score = 28.9 bits (65), Expect = 4.3
Identities = 9/42 (21%), Positives = 19/42 (45%)
Query: 453 PVPSICAQDQIADWFDSLGECLHWNVRKRQKHLDELSDLTHS 494
P+P + Q +I + D + + + R + + EL L +
Sbjct: 361 PLPPLEEQRRIVAYLDQIQQQVAALKRAQAETEAELKRLEQA 402
>1e0t_A Pyruvate kinase, PK; phosphotransferase, glycolysis, allostery;
1.8A {Escherichia coli} SCOP: b.58.1.1 c.1.12.1 c.49.1.1
PDB: 1pky_A 1e0u_A
Length = 470
Score = 29.0 bits (66), Expect = 4.5
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 4/32 (12%)
Query: 365 LIVSTPTGSTAYAVAAGASMIHPSVPAIMVTP 396
++V+T G +A AV P + +T
Sbjct: 374 IVVATQGGKSARAVRK----YFPDATILALTT 401
>3gg8_A Pyruvate kinase; malaria, genomics, proteomics, glycolysis,
magnesium, transferase, structural genomics, STRU
genomics consortium, SGC; 2.21A {Toxoplasma gondii} PDB:
3eoe_A
Length = 511
Score = 28.7 bits (65), Expect = 5.4
Identities = 7/32 (21%), Positives = 14/32 (43%), Gaps = 4/32 (12%)
Query: 365 LIVSTPTGSTAYAVAAGASMIHPSVPAIMVTP 396
++ T TG TA + + P P + ++
Sbjct: 413 ILALTETGQTARLI----AKYRPMQPILALSA 440
>3ma8_A Pyruvate kinase; parasitology, pyruvate kiase, glycol kinase,
magnesium, transferase, structural genomi structural
genomics consortium; HET: CIT; 2.64A {Cryptosporidium
parvum}
Length = 534
Score = 28.8 bits (65), Expect = 5.5
Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 4/32 (12%)
Query: 365 LIVSTPTGSTAYAVAAGASMIHPSVPAIMVTP 396
+I T TG+TA + S PS I T
Sbjct: 436 IITITETGNTARLI----SKYRPSQTIIACTA 463
>3hqn_D Pyruvate kinase, PK; TIM barrel, T-state enzyme, transferase,
allosteric enzyme, binding, glycolysis, magnesium,
metal-binding, NUCL binding; 2.00A {Leishmania mexicana}
PDB: 1pkl_A 3hqo_K* 3hqp_A* 3hqq_A* 3is4_A* 3ktx_A*
3qv6_A* 3qv7_D* 3qv8_D* 3e0w_A 3e0v_A 3pp7_A* 3qv9_A*
Length = 499
Score = 28.7 bits (65), Expect = 5.5
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 365 LIVSTPTGSTAYAVAAGASMIHPSVPAIMVTP 396
++V + TG +A V + P+ P + VT
Sbjct: 397 MVVLSNTGRSARLV----AKYRPNCPIVCVTT 424
>3ca8_A Protein YDCF; two domains, alpha/beta fold, helix bundle,
structural genom structure 2 function project, S2F,
unknown function; 1.80A {Escherichia coli}
Length = 266
Score = 28.2 bits (62), Expect = 6.0
Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 4/59 (6%)
Query: 233 RDGKDDLTDKIDFIICLGG--DGTLLYASLLFQQSVPPVMAFHLGSLGFLTPFEFENFE 289
D ++ + D +I G T+ A + + P++ G +G T F +
Sbjct: 27 DDFSGEVPYQADCVILAGNAVMPTIDAACKIARDQQIPLLIS--GGIGHSTTFLYSAIA 83
>3gra_A Transcriptional regulator, ARAC family; transcription regulator,
PSI-II, structural genomics structure initiative; 2.30A
{Pseudomonas putida}
Length = 202
Score = 27.9 bits (63), Expect = 6.3
Identities = 2/31 (6%), Positives = 9/31 (29%)
Query: 65 WTHSNQFRRHYRDSDCDSGIFSVAGDAMTSS 95
+ F++ D ++++
Sbjct: 129 PEQRASLSERSPQTRITPASFTLDRDRLSAA 159
>1a3w_A Pyruvate kinase; allosteric regulation, tranferase, transfer; HET:
FBP; 3.00A {Saccharomyces cerevisiae} SCOP: b.58.1.1
c.1.12.1 c.49.1.1 PDB: 1a3x_A
Length = 500
Score = 28.4 bits (64), Expect = 6.7
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
Query: 365 LIVSTPTGSTAYAVAAGASMIHPSVPAIMVTP 396
+IV + +G+T V S P+ P I+VT
Sbjct: 398 IIVLSTSGTTPRLV----SKYRPNCPIILVTR 425
>3r8s_G 50S ribosomal protein L6; protein biosynthesis, RNA, tRNA, transfer
RNA, 23S ribosomal subunit, ribosome recycling factor,
RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_E
1p86_E 2awb_G 2aw4_G 2i2v_G 2j28_G 2i2t_G* 2qao_G*
2qba_G* 2qbc_G* 2qbe_G 2qbg_G 2qbi_G* 2qbk_G* 2qov_G
2qox_G 2qoz_G* 2qp1_G* 2rdo_G 2vhm_G ...
Length = 176
Score = 27.4 bits (62), Expect = 6.9
Identities = 9/14 (64%), Positives = 13/14 (92%)
Query: 405 RPIVVPAGVELKIS 418
P+VVPAGV++KI+
Sbjct: 6 APVVVPAGVDVKIN 19
>3khd_A Pyruvate kinase; malaria, structural genomics, structural GE
consortium, SGC, transferase; 2.70A {Plasmodium
falciparum 3D7}
Length = 520
Score = 28.3 bits (64), Expect = 7.1
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 4/32 (12%)
Query: 365 LIVSTPTGSTAYAVAAGASMIHPSVPAIMVTP 396
+I T TG TA + + PS + ++
Sbjct: 422 IIALTETGYTARLI----AKYKPSCTILALSA 449
>3gr4_A Pyruvate kinase isozymes M1/M2; activator, acetylation, allosteric
enzyme, alternative splicing, glycolysis, magnesium,
metal-binding; HET: FBP TLA DYY ADP; 1.60A {Homo
sapiens} PDB: 3gqy_A* 3h6o_A* 3me3_A* 1zjh_A 3g2g_A
1t5a_A* 3bjt_A 3bjf_A* 1f3x_A 3n25_A 1f3w_A 1a49_A*
1a5u_A* 1aqf_A* 1pkm_A 2g50_A* 1pkn_A 2vgb_A* 2vgf_A*
2vgg_A* ...
Length = 550
Score = 28.5 bits (64), Expect = 7.1
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 365 LIVSTPTGSTAYAVAAGASMIHPSVPAIMVTP 396
+IV T +G +A+ V + P P I VT
Sbjct: 447 IIVLTKSGRSAHQV----ARYRPRAPIIAVTR 474
>1rl6_A Protein (ribosomal protein L6); RNA-binding protein, gentamicin
resistance, alpha/beta protein; 2.00A {Geobacillus
stearothermophilus} SCOP: d.141.1.1 d.141.1.1 PDB:
1giy_H 1ml5_h* 1c04_B 1yl3_H 2b66_H 2b9n_H 2b9p_H 1eg0_J
487d_J
Length = 177
Score = 27.5 bits (62), Expect = 7.3
Identities = 6/14 (42%), Positives = 11/14 (78%)
Query: 405 RPIVVPAGVELKIS 418
+PI +PAGV + ++
Sbjct: 6 KPIEIPAGVTVTVN 19
>3t05_A Pyruvate kinase, PK; tetramer, glycolysis, transferase; 3.05A
{Staphylococcus aureus subsp} PDB: 3t07_A*
Length = 606
Score = 28.3 bits (64), Expect = 7.3
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 365 LIVSTPTGSTAYAVAAGASMIHPSVPAIMVTP 396
++ +T +GSTA + S P I VTP
Sbjct: 396 IVAATESGSTARTI----SKYRPHSDIIAVTP 423
>3v2d_H 50S ribosomal protein L6; ribosome associated inhibitor A, RAIA,
protein Y, stress RES stationary phase, ribosome
hibernation, ribosome; 2.70A {Thermus thermophilus} PDB:
1vsp_F 2hgj_H 2hgq_H 2hgu_H 1vsa_F 2j03_H 2jl6_H 2jl8_H
2v47_H 2v49_H 2wdi_H 2wdj_H 2wdl_H 2wdn_H 2wh2_H 2wh4_H
2wrj_H 2wrl_H 2wro_H 2wrr_H ...
Length = 180
Score = 27.5 bits (62), Expect = 7.7
Identities = 6/14 (42%), Positives = 10/14 (71%)
Query: 405 RPIVVPAGVELKIS 418
PI VP GV ++++
Sbjct: 7 LPIPVPKGVSVEVA 20
>2zjr_E 50S ribosomal protein L6; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: d.141.1.1 d.141.1.1 PDB: 1nwx_E*
1xbp_E* 2zjp_E* 2zjq_E 1nwy_E 3cf5_E* 3dll_E* 3pio_E*
3pip_E* 1pnu_E 1pny_E 1vor_H 1vou_H 1vow_H 1voy_H 1vp0_H
Length = 185
Score = 27.5 bits (62), Expect = 8.3
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 405 RPIVVPAGVELKIS 418
+PI VP+GV +
Sbjct: 7 QPIAVPSGVTVNAQ 20
>3bbo_I Ribosomal protein L6; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 223
Score = 27.6 bits (62), Expect = 8.6
Identities = 5/14 (35%), Positives = 9/14 (64%)
Query: 405 RPIVVPAGVELKIS 418
+PI VP+ V + +
Sbjct: 49 QPIAVPSNVTIALE 62
>2y7c_A Type-1 restriction enzyme ecoki specificity prote; transferase;
18.00A {Escherichia coli} PDB: 2y7h_A*
Length = 464
Score = 27.8 bits (62), Expect = 8.8
Identities = 8/42 (19%), Positives = 17/42 (40%)
Query: 453 PVPSICAQDQIADWFDSLGECLHWNVRKRQKHLDELSDLTHS 494
+P + Q +I + L ++ L +++LT S
Sbjct: 371 LLPPVKEQAEIVRRVEQLFAYADTIEKQVNNALARVNNLTQS 412
>1nkw_E 50S ribosomal protein L6; ribosome, large subunit, X- RAY
structure, peptidyl-transferase, peptide bond formation;
3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB:
1sm1_E*
Length = 212
Score = 27.5 bits (62), Expect = 9.3
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 405 RPIVVPAGVELKIS 418
+PI VP+GV +
Sbjct: 34 QPIAVPSGVTVNAQ 47
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.399
Gapped
Lambda K H
0.267 0.0874 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,631,329
Number of extensions: 449244
Number of successful extensions: 1057
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1029
Number of HSP's successfully gapped: 42
Length of query: 511
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 413
Effective length of database: 3,965,535
Effective search space: 1637765955
Effective search space used: 1637765955
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.2 bits)