RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5950
(511 letters)
>d1u0ta_ e.52.1.1 (A:) Inorganic polyphosphate/ATP-NAD kinase PpnK
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 302
Score = 169 bits (429), Expect = 2e-49
Identities = 80/307 (26%), Positives = 133/307 (43%), Gaps = 10/307 (3%)
Query: 173 TVLVIKKVRDVSVLQPFVKLVKWLIQEKSMLVYVEQSVMDDTLLATNPSFTVVKDKLMTF 232
+VL++ + ++ K L K L + +D L P +
Sbjct: 2 SVLLVVHTGRDEATETARRVEKVLGDNKIALRVLSAEAVDRGSLHLAPDDMRAMGVEIEV 61
Query: 233 RDGKDDLTDKIDFIICLGGDGTLLYASLLFQQSVPPVMAFHLGSLGFLTPFEFENFEDQV 292
D D + ++ LGGDGT L A+ L + + PV+ +LG +GFL E E + +
Sbjct: 62 VDADQHAADGCELVLVLGGDGTFLRAAELARNASIPVLGVNLGRIGFLAEAEAEAIDAVL 121
Query: 293 TNVLEGHAALTLRSRLRCIIMRKNEETAKDAKPPTNILVLNEVVIDRGPSPYLSNIDLYL 352
+V+ + R L ++ + + LNEV +++GP + + + +
Sbjct: 122 EHVVAQDYRVEDRLTLDVVVRQGGRIVNRG-------WALNEVSLEKGPRLGVLGVVVEI 174
Query: 353 DGKLITSVQGDGLIVSTPTGSTAYAVAAGASMIHPSVPAIMVTPICPHSLSFRPIVVPAG 412
DG+ +++ DG++VSTPTGSTAYA +AG ++ P + AI+V P H+L RP+V
Sbjct: 175 DGRPVSAFGCDGVLVSTPTGSTAYAFSAGGPVLWPDLEAILVVPNNAHALFGRPMVTSPE 234
Query: 413 VELKISVSPDSRNTAWVSFDGRNRQELLHGDSLRVTTSIYPVPSICAQDQIADWFDSLGE 472
+ I + D + A V DGR + G L VT + V + D L
Sbjct: 235 ATIAIEIEADGHD-ALVFCDGRREMLIPAGSRLEVTRCVTSVKWARLDSA--PFTDRLVR 291
Query: 473 CLHWNVR 479
V
Sbjct: 292 KFRLPVT 298
>d1z0sa1 e.52.1.1 (A:1-249) Inorganic polyphosphate/ATP-NAD kinase
PpnK {Archaeoglobus fulgidus [TaxId: 2234]}
Length = 249
Score = 131 bits (330), Expect = 9e-36
Identities = 55/249 (22%), Positives = 102/249 (40%), Gaps = 27/249 (10%)
Query: 228 KLMTFRDGKDDLTDKIDFIICLGGDGTLLYASLLFQQSVPPVMAFHLGSLGFLTPFEFEN 287
++ F ++L + DFI+ +GGDGT+L ++ PP+ + G +G LT EN
Sbjct: 26 EVELFNQPSEEL-ENFDFIVSVGGDGTILRILQKLKRC-PPIFGINTGRVGLLTHASPEN 83
Query: 288 FEDQVTNVLEGHAALTLRSRLRCIIMRKNEETAKDAKPPTNILVLNEVVIDRGPSPYLSN 347
FE ++ +E + LNE+ + + +
Sbjct: 84 FEVELKKAVEKFEVERFPRVSCSAMPDVL--------------ALNEIAVLSRKPAKMID 129
Query: 348 IDLYLDGKLITSVQGDGLIVSTPTGSTAYAVAAGASMIHPSVPAIMVTPICPHSLSFRPI 407
+ L +DG + ++ DG IV+T GST YA +AG ++ P + ++ PI P ++P
Sbjct: 130 VALRVDGVEVDRIRCDGFIVATQIGSTGYAFSAGGPVVEPYLECFILIPIAPFRFGWKPY 189
Query: 408 VVPAGVELKISVSPDSRNTAWVSFDGRNRQELLHGDSLRVTTSIYPVPSICAQDQIADWF 467
VV ++++ A V DG+ + + + S +P + F
Sbjct: 190 VVSMERKIEVIAEK-----AIVVADGQKSVDF--DGEITIEKSEFPAVFF----KNEKRF 238
Query: 468 DSLGECLHW 476
+L +
Sbjct: 239 RNLFGKVRS 247
>d1bg1a1 a.47.1.1 (A:136-321) STAT3b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 186
Score = 30.6 bits (69), Expect = 0.31
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 461 DQIADWFDSLGECLHWNVRKRQKHLDELSD-LTHSSSN--DTLDSLE 504
D++ +W SL E R++ K L+EL +++ LE
Sbjct: 126 DRLENWITSLAESQ-LQTRQQIKKLEELQQKVSYKGDPIVQHRPMLE 171
>d1bf5a1 a.47.1.1 (A:136-316) STAT-1, coiled coil domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 181
Score = 29.4 bits (66), Expect = 0.73
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 461 DQIADWFDSLGECLHWNVRKRQKHLDELS-DLTHSSSN--DTLDSLE 504
DQ+ +WF + E L VR++ K L+EL T+ L
Sbjct: 122 DQLQNWFTIVAESL-QQVRQQLKKLEELEQKYTYEHDPITKNKQVLW 167
>d2arca_ b.82.4.1 (A:) Regulatory protein AraC {Escherichia coli
[TaxId: 562]}
Length = 161
Score = 27.3 bits (60), Expect = 3.1
Identities = 12/66 (18%), Positives = 20/66 (30%), Gaps = 2/66 (3%)
Query: 407 IVVPAGVELKISVSPDSRNTA--WVSFDGRNRQELLHGDSLRVTTSIYPVPSICAQDQIA 464
++ P G P++R WV F R + + P Q +
Sbjct: 66 LLFPPGEIHHYGRHPEAREWYHQWVYFRPRAYWHEWLNWPSIFANTGFFRPDEAHQPHFS 125
Query: 465 DWFDSL 470
D F +
Sbjct: 126 DLFGQI 131
>d2qv7a1 e.52.1.2 (A:1-312) Diacylglycerol kinase DgkB
{Staphylococcus aureus [TaxId: 1280]}
Length = 312
Score = 27.3 bits (59), Expect = 4.7
Identities = 11/77 (14%), Positives = 25/77 (32%), Gaps = 6/77 (7%)
Query: 236 KDDLTDKIDFIICLGGDGTL-LYASLLFQQSVPPVMAFHLGSLGFLTPFEFENFEDQVTN 294
+ + + D +I GGDGTL + + ++ P + + N
Sbjct: 52 ERAMHENYDVLIAAGGDGTLNEVVNGIAEKPNRPKLGVIPMGTVNDFGRAL-----HIPN 106
Query: 295 VLEGHAALTLRSRLRCI 311
+ G + + +
Sbjct: 107 DIMGALDVIIEGHSTKV 123
>d2qamg1 d.141.1.1 (G:1-81) Ribosomal protein L6 {Escherichia coli
[TaxId: 562]}
Length = 81
Score = 25.1 bits (55), Expect = 5.8
Identities = 9/14 (64%), Positives = 13/14 (92%)
Query: 405 RPIVVPAGVELKIS 418
P+VVPAGV++KI+
Sbjct: 6 APVVVPAGVDVKIN 19
>d1qhda2 b.19.1.1 (A:149-332) vp6, the major capsid protein of group
A rotavirus {Bovine rotavirus [TaxId: 10927]}
Length = 184
Score = 26.4 bits (58), Expect = 6.0
Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 15/60 (25%)
Query: 129 TRSLNAPSPIQQF---GPCGRIMKNSAMVM-----------TIQDPASQRLTWYKPPLTV 174
+ ++NAP+ QQF R++ + + + I TWY P+ +
Sbjct: 48 SCAINAPANTQQFEHIVQLRRVLTTATITLLPDAERFSFPRVITSADGAT-TWYFNPVIL 106
>d1l4ia2 b.7.2.1 (A:121-205) SfaE {Escherichia coli [TaxId: 562]}
Length = 85
Score = 25.1 bits (55), Expect = 6.9
Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 7/60 (11%)
Query: 354 GKLITSVQGDGLIVSTPTGSTAYAVAAGASMIHPSVPAIMVTPICPHSLSFRPIVVPAGV 413
GKL + + GL + PT Y + S+ MV P + +P G
Sbjct: 9 GKLEFTRENGGLTLFNPTPY--YLTVTDLKAGNKSLENTMVPP-----QGKVTVNIPGGY 61
>d1x6ma_ b.88.1.4 (A:) Glutathione-dependent formaldehyde-activating
enzyme, Gfa {Paracoccus denitrificans [TaxId: 266]}
Length = 196
Score = 25.8 bits (56), Expect = 9.7
Identities = 14/76 (18%), Positives = 22/76 (28%), Gaps = 5/76 (6%)
Query: 56 VSRGQLKEYWTHSNQFRRHYRDSDCDSGIFSVAGDAMTSSTSNDS----TLDSHLLIEPE 111
V G K ++ + +R DC ++ + D D PE
Sbjct: 80 VLEGAEKLEIVNAEAPIQRHRCRDCGVHMYGRIENRDHPFYGLDFVHTELSDEDGWSAPE 139
Query: 112 PESIWTSYRQRSGSWP 127
+ S SG P
Sbjct: 140 FA-AFVSSIIESGVDP 154
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.133 0.399
Gapped
Lambda K H
0.267 0.0429 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,857,791
Number of extensions: 84819
Number of successful extensions: 186
Number of sequences better than 10.0: 1
Number of HSP's gapped: 182
Number of HSP's successfully gapped: 10
Length of query: 511
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 422
Effective length of database: 1,185,626
Effective search space: 500334172
Effective search space used: 500334172
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.7 bits)