BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5955
(134 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P19096|FAS_MOUSE Fatty acid synthase OS=Mus musculus GN=Fasn PE=1 SV=2
Length = 2504
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 61/104 (58%), Gaps = 6/104 (5%)
Query: 1 MDCVKQEPGGLGARCVFITD----AKQPPFSPSSPTYAPLLAKDLLYNVYRAGTWGSMRH 56
++C+++EPGG RC+ +++ + P P SP +L DL+ NVYR G WG+ RH
Sbjct: 1450 VNCLRKEPGGHRIRCILLSNLSNTSHAPKLDPGSPELQQVLKHDLVMNVYRDGAWGAFRH 1509
Query: 57 ILLDTTPDNATLQVEHAYINALTRGDLASLKWIEGPLSFYNITS 100
L+ D Q HA++N LTRGDLAS++W+ PL +S
Sbjct: 1510 FQLEQ--DKPKEQTAHAFVNVLTRGDLASIRWVSSPLKHTQPSS 1551
>sp|P12785|FAS_RAT Fatty acid synthase OS=Rattus norvegicus GN=Fasn PE=1 SV=3
Length = 2505
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 58/97 (59%), Gaps = 6/97 (6%)
Query: 1 MDCVKQEPGGLGARCVFITD----AKQPPFSPSSPTYAPLLAKDLLYNVYRAGTWGSMRH 56
++C+++EPGG RC+ +++ + P P S +L DL+ NVYR G WG+ RH
Sbjct: 1450 VNCLRKEPGGHRIRCILLSNLSSTSHVPKLDPGSSELQKVLESDLVMNVYRDGAWGAFRH 1509
Query: 57 ILLDTTPDNATLQVEHAYINALTRGDLASLKWIEGPL 93
L+ D Q HA++N LTRGDLAS++W+ PL
Sbjct: 1510 FQLEQ--DKPEEQTAHAFVNVLTRGDLASIRWVSSPL 1544
>sp|Q71SP7|FAS_BOVIN Fatty acid synthase OS=Bos taurus GN=FASN PE=2 SV=1
Length = 2513
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 59/104 (56%), Gaps = 6/104 (5%)
Query: 1 MDCVKQEPGGLGARCVFITDAKQ----PPFSPSSPTYAPLLAKDLLYNVYRAGTWGSMRH 56
++C+++EP G RCV +++ P P S +L DL+ NVYR G WG+ RH
Sbjct: 1459 VNCLRKEPDGHRIRCVLVSNLNSTSPIPETDPKSLELQKVLQSDLVMNVYRDGAWGAFRH 1518
Query: 57 ILLDTTPDNATLQVEHAYINALTRGDLASLKWIEGPLSFYNITS 100
L+ D Q EHA+IN LTRGDL+S++W+ PL T+
Sbjct: 1519 FPLEQ--DKPEEQTEHAFINVLTRGDLSSIRWVCSPLRHSQPTA 1560
>sp|P12276|FAS_CHICK Fatty acid synthase OS=Gallus gallus GN=FASN PE=1 SV=5
Length = 2512
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 69/119 (57%), Gaps = 9/119 (7%)
Query: 1 MDCVKQEPGGLGARCVFITD----AKQPPFSPSSPTYAPLLAKDLLYNVYRAGTWGSMRH 56
++C++ E G RCVF+++ + P S SS ++ +DL+ NVYR G WGS RH
Sbjct: 1461 VNCLRLEAEGHRIRCVFVSNLSPSSTVPATSLSSLEMQKIIERDLVMNVYRDGKWGSFRH 1520
Query: 57 I-LLDTTPDNATLQVEHAYINALTRGDLASLKWIEGPLSFYNITS-VILLLQIEHAYIN 113
+ L P T E AY+N LTRGDL+SL+WI PL + T+ + L ++ +A +N
Sbjct: 1521 LPLQQAQPQELT---ECAYVNVLTRGDLSSLRWIVSPLRHFQTTNPNVQLCKVYYASLN 1576
>sp|P49327|FAS_HUMAN Fatty acid synthase OS=Homo sapiens GN=FASN PE=1 SV=3
Length = 2511
Score = 79.0 bits (193), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 56/93 (60%), Gaps = 6/93 (6%)
Query: 1 MDCVKQEPGGLGARCVFITD----AKQPPFSPSSPTYAPLLAKDLLYNVYRAGTWGSMRH 56
++C+++EPGG RCV +++ + P P S +L DL+ NVYR G WG+ RH
Sbjct: 1457 VNCLRREPGGNRLRCVLLSNLSSTSHVPEVDPGSAELQKVLQGDLVMNVYRDGAWGAFRH 1516
Query: 57 ILLDTTPDNATLQVEHAYINALTRGDLASLKWI 89
LL+ D HA+++ LTRGDL+S++W+
Sbjct: 1517 FLLEE--DKPEEPTAHAFVSTLTRGDLSSIRWV 1547
>sp|A0Q4G6|SYE_FRATN Glutamate--tRNA ligase OS=Francisella tularensis subsp. novicida
(strain U112) GN=gltX PE=3 SV=1
Length = 468
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 16/97 (16%)
Query: 44 NVYRA--GTWGSMRHILLDTTPDNATLQVEHAYINALT-RGD----------LASLKWIE 90
N+Y+A H+ + PD A L H +N + R D L L W
Sbjct: 211 NIYKALNANVPVFAHVPMILGPDGAKLSKRHGAVNVMQYREDGYLPQAILNYLVRLGWSH 270
Query: 91 GPLSFYNITSVILLLQIEHAYINAL-TRGDLASLKWI 126
G ++I +I +EH INA +R D LKW+
Sbjct: 271 GDQEIFSIEEMIKAFNLEH--INASPSRFDFEKLKWL 305
>sp|A4IZU9|SYE_FRATW Glutamate--tRNA ligase OS=Francisella tularensis subsp. tularensis
(strain WY96-3418) GN=gltX PE=3 SV=1
Length = 468
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 16/97 (16%)
Query: 44 NVYRA--GTWGSMRHILLDTTPDNATLQVEHAYINALT-RGD----------LASLKWIE 90
N+Y+A H+ + PD A L H +N + R D L L W
Sbjct: 211 NIYKALNANVPVFAHVPMILGPDGAKLSKRHGAVNVMQYREDGYLPQAILNYLVRLGWSH 270
Query: 91 GPLSFYNITSVILLLQIEHAYINAL-TRGDLASLKWI 126
G ++I +I +EH INA +R D LKW+
Sbjct: 271 GDQEIFSIEEMIKAFNLEH--INASPSRFDFEKLKWL 305
>sp|B2SE01|SYE_FRATM Glutamate--tRNA ligase OS=Francisella tularensis subsp.
mediasiatica (strain FSC147) GN=gltX PE=3 SV=1
Length = 468
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 16/97 (16%)
Query: 44 NVYRA--GTWGSMRHILLDTTPDNATLQVEHAYINALT-RGD----------LASLKWIE 90
N+Y+A H+ + PD A L H +N + R D L L W
Sbjct: 211 NIYKALNANVPVFAHVPMILGPDGAKLSKRHGAVNVMQYREDGYLPQAILNYLVRLGWSH 270
Query: 91 GPLSFYNITSVILLLQIEHAYINAL-TRGDLASLKWI 126
G ++I +I +EH INA +R D LKW+
Sbjct: 271 GDQEIFSIEEMIKAFNLEH--INASPSRFDFEKLKWL 305
>sp|Q0BNU3|SYE_FRATO Glutamate--tRNA ligase OS=Francisella tularensis subsp. holarctica
(strain OSU18) GN=gltX PE=3 SV=1
Length = 468
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 16/97 (16%)
Query: 44 NVYRA--GTWGSMRHILLDTTPDNATLQVEHAYINALT-RGD----------LASLKWIE 90
N+Y+A H+ + PD A L H +N + R D L L W
Sbjct: 211 NIYKALNANVPVFAHVPMILGPDGAKLSKRHGAVNVMQYREDGYLPQAILNYLVRLGWSH 270
Query: 91 GPLSFYNITSVILLLQIEHAYINAL-TRGDLASLKWI 126
G ++I +I +EH INA +R D LKW+
Sbjct: 271 GDQEIFSIEEMIKAFNLEH--INASPSRFDFEKLKWL 305
>sp|Q2A5I8|SYE_FRATH Glutamate--tRNA ligase OS=Francisella tularensis subsp. holarctica
(strain LVS) GN=gltX PE=3 SV=1
Length = 468
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 16/97 (16%)
Query: 44 NVYRA--GTWGSMRHILLDTTPDNATLQVEHAYINALT-RGD----------LASLKWIE 90
N+Y+A H+ + PD A L H +N + R D L L W
Sbjct: 211 NIYKALNANVPVFAHVPMILGPDGAKLSKRHGAVNVMQYREDGYLPQAILNYLVRLGWSH 270
Query: 91 GPLSFYNITSVILLLQIEHAYINAL-TRGDLASLKWI 126
G ++I +I +EH INA +R D LKW+
Sbjct: 271 GDQEIFSIEEMIKAFNLEH--INASPSRFDFEKLKWL 305
>sp|A7N9Q8|SYE_FRATF Glutamate--tRNA ligase OS=Francisella tularensis subsp. holarctica
(strain FTNF002-00 / FTA) GN=gltX PE=3 SV=1
Length = 468
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 16/97 (16%)
Query: 44 NVYRA--GTWGSMRHILLDTTPDNATLQVEHAYINALT-RGD----------LASLKWIE 90
N+Y+A H+ + PD A L H +N + R D L L W
Sbjct: 211 NIYKALNANVPVFAHVPMILGPDGAKLSKRHGAVNVMQYREDGYLPQAILNYLVRLGWSH 270
Query: 91 GPLSFYNITSVILLLQIEHAYINAL-TRGDLASLKWI 126
G ++I +I +EH INA +R D LKW+
Sbjct: 271 GDQEIFSIEEMIKAFNLEH--INASPSRFDFEKLKWL 305
>sp|Q5NHY6|SYE_FRATT Glutamate--tRNA ligase OS=Francisella tularensis subsp. tularensis
(strain SCHU S4 / Schu 4) GN=gltX PE=3 SV=1
Length = 468
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 14/83 (16%)
Query: 56 HILLDTTPDNATLQVEHAYINALT-RGD----------LASLKWIEGPLSFYNITSVILL 104
H+ + PD A L H +N + R D L L W G ++I +I
Sbjct: 225 HVPMILGPDGAKLSKRHGAVNVMQYREDGYLPQAILNYLVRLGWSHGDQEIFSIEEMIKA 284
Query: 105 LQIEHAYINAL-TRGDLASLKWI 126
+EH INA +R D LKW+
Sbjct: 285 FNLEH--INASPSRFDFEKLKWL 305
>sp|Q14JD8|SYE_FRAT1 Glutamate--tRNA ligase OS=Francisella tularensis subsp. tularensis
(strain FSC 198) GN=gltX PE=3 SV=1
Length = 468
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 14/83 (16%)
Query: 56 HILLDTTPDNATLQVEHAYINALT-RGD----------LASLKWIEGPLSFYNITSVILL 104
H+ + PD A L H +N + R D L L W G ++I +I
Sbjct: 225 HVPMILGPDGAKLSKRHGAVNVMQYREDGYLPQAILNYLVRLGWSHGDQEIFSIEEMIKA 284
Query: 105 LQIEHAYINAL-TRGDLASLKWI 126
+EH INA +R D LKW+
Sbjct: 285 FNLEH--INASPSRFDFEKLKWL 305
>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700,
chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1
Length = 754
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 1 MDCVKQEPGGLGARCVFITDAKQPPFSPSSPTYAPLLAKDLLYNVYRAGTWGSMRHILLD 60
+D ++ +P A +F +K+P FSP P L +++L + R+G++ M+ IL D
Sbjct: 54 LDSLRSQPDDSAALRLFNLASKKPNFSPE-----PALYEEILLRLGRSGSFDDMKKILED 108
>sp|P52533|VU84_HHV6Z Protein U84 OS=Human herpesvirus 6B (strain Z29) GN=U84 PE=3 SV=2
Length = 342
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 7/46 (15%)
Query: 2 DCVKQEPGGLGARCVFITDAKQPPFSPSSPTYAPLLAKDLLYNVYR 47
+C +Q+P + A +F + PP+SP SP K+ + +YR
Sbjct: 144 ECQRQDPNAVNAFKIFQSYETSPPYSPCSP-------KNFMSEIYR 182
>sp|B0U106|SYE_FRAP2 Glutamate--tRNA ligase OS=Francisella philomiragia subsp.
philomiragia (strain ATCC 25017) GN=gltX PE=3 SV=1
Length = 469
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 14/83 (16%)
Query: 56 HILLDTTPDNATLQVEHAYINALT-RGD----------LASLKWIEGPLSFYNITSVILL 104
H+ + PD A L H +N + R D L L W G ++I +I
Sbjct: 225 HVPMILGPDGAKLSKRHGAVNVMQYREDGYLPQAILNYLVRLGWSHGDQEIFSIDEMIKS 284
Query: 105 LQIEHAYINAL-TRGDLASLKWI 126
+EH INA +R D LKW+
Sbjct: 285 FNLEH--INASPSRFDFDKLKWL 305
>sp|Q9NVE5|UBP40_HUMAN Ubiquitin carboxyl-terminal hydrolase 40 OS=Homo sapiens GN=USP40
PE=2 SV=3
Length = 1235
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 28 PSSPTYAPLLAKDLLYNVYRAGTWGSMRHILLD 60
P TYAP L DL++N + GT GS+R + D
Sbjct: 1078 PGERTYAPAL--DLVWNAAQGGTAGSLRQRVAD 1108
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.137 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,249,819
Number of Sequences: 539616
Number of extensions: 1883736
Number of successful extensions: 4162
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 4138
Number of HSP's gapped (non-prelim): 25
length of query: 134
length of database: 191,569,459
effective HSP length: 100
effective length of query: 34
effective length of database: 137,607,859
effective search space: 4678667206
effective search space used: 4678667206
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)