Query psy5955
Match_columns 134
No_of_seqs 140 out of 238
Neff 5.3
Searched_HMMs 46136
Date Fri Aug 16 22:51:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5955.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5955hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1202|consensus 100.0 2.8E-41 6E-46 314.0 5.5 119 1-124 1347-1465(2376)
2 KOG1202|consensus 98.9 3.5E-10 7.7E-15 108.0 0.7 82 42-132 1346-1438(2376)
3 KOG1348|consensus 45.9 21 0.00045 31.8 2.9 54 30-95 209-269 (477)
4 PF08043 Xin: Xin repeat; Int 41.1 14 0.0003 18.4 0.7 9 118-126 1-9 (16)
5 smart00783 A_amylase_inhib Alp 22.5 61 0.0013 21.9 1.6 14 45-58 33-46 (69)
6 PF02722 MOSP_C: Major Outer S 20.9 39 0.00084 27.3 0.4 9 48-56 100-109 (201)
7 PRK11191 RNase E inhibitor pro 19.9 35 0.00076 25.8 0.0 47 7-54 68-114 (138)
8 cd02005 TPP_PDC_IPDC Thiamine 16.6 1.3E+02 0.0027 22.8 2.4 44 13-57 70-113 (183)
9 PRK09354 recA recombinase A; P 16.2 1.9E+02 0.0042 24.9 3.7 56 5-60 235-300 (349)
10 COG3076 Uncharacterized protei 15.9 40 0.00086 25.2 -0.5 43 9-56 67-113 (135)
No 1
>KOG1202|consensus
Probab=100.00 E-value=2.8e-41 Score=314.05 Aligned_cols=119 Identities=45% Similarity=0.766 Sum_probs=113.7
Q ss_pred CceeccCCCCceEEEEEecCCCCCCCCCCCcchHHHHhcCccceEEecCccceEEeeeeCCCCCCcccchhhhhhceecc
Q psy5955 1 MDCVKQEPGGLGARCVFITDAKQPPFSPSSPTYAPLLAKDLLYNVYRAGTWGSMRHILLDTTPDNATLQVEHAYINALTR 80 (134)
Q Consensus 1 vnClR~Epgg~~iR~vfi~d~~ap~f~~~~~~y~~ql~~dL~~NV~r~G~WGSyRHl~l~~~~~~~~~~~~hayvN~l~r 80 (134)
||||++|+|| ..||++++|.++|+|++.+++|++||+|||++||||||.||||||++++ .+++..++||||||+|+|
T Consensus 1347 ~~Clk~E~gg-~~R~~~~~d~s~p~~~l~~~~~~k~le~DLv~NvyrdGaWGs~RHl~le--~~~~~~~~ehAfvntLtr 1423 (2376)
T KOG1202|consen 1347 MNCLKRENGG-TLRLVLLSDLSVPEFSLGSAEYQKQLEKDLVMNVYRDGAWGSFRHLKLE--EDKPELPVEHAFVNTLTR 1423 (2376)
T ss_pred hhHhhhcCCC-eEEEEEeecCCCCcccCCCHHHHHHHHhhhhhhhhhcCcccceeeeEec--ccCCCcchHHHHHHHhhh
Confidence 6999999999 8999999999999999999999999999999999999999999999999 667778999999999999
Q ss_pred ccccceeeeeccccccccccccccceeEeEEEEccCccccccce
Q psy5955 81 GDLASLKWIEGPLSFYNITSVILLLQIEHAYINALTRGDLASLK 124 (134)
Q Consensus 81 GDLsSlrWie~p~~~~~~~~~~~~~~~~~vyy~~ln~gDl~sl~ 124 (134)
||||||||||+|+++.+| ..++.++|.|||++|||||+|++.
T Consensus 1424 GDlsSlrWies~~~~a~~--~~~~~e~CtVYYAplNFRDiMLas 1465 (2376)
T KOG1202|consen 1424 GDLSSLRWIESPLRHAQP--TCPGLELCTVYYAPLNFRDIMLAS 1465 (2376)
T ss_pred ccccceeeeecchhhcCC--CCCCCceeEEEeccccHHHHHHhc
Confidence 999999999999998877 778899999999999999999874
No 2
>KOG1202|consensus
Probab=98.89 E-value=3.5e-10 Score=107.99 Aligned_cols=82 Identities=33% Similarity=0.538 Sum_probs=66.4
Q ss_pred cceEEecCccceEEeeeeCCCCCCc-ccc----------hhhhhhceeccccccceeeeeccccccccccccccceeEeE
Q psy5955 42 LYNVYRAGTWGSMRHILLDTTPDNA-TLQ----------VEHAYINALTRGDLASLKWIEGPLSFYNITSVILLLQIEHA 110 (134)
Q Consensus 42 ~~NV~r~G~WGSyRHl~l~~~~~~~-~~~----------~~hayvN~l~rGDLsSlrWie~p~~~~~~~~~~~~~~~~~v 110 (134)
+|||+|....|..|-..+. +.++ .++ ..+..+|+++.|.|+|+||+.... +++..+.+|+
T Consensus 1346 L~~Clk~E~gg~~R~~~~~--d~s~p~~~l~~~~~~k~le~DLv~NvyrdGaWGs~RHl~le~-------~~~~~~~ehA 1416 (2376)
T KOG1202|consen 1346 LMNCLKRENGGTLRLVLLS--DLSVPEFSLGSAEYQKQLEKDLVMNVYRDGAWGSFRHLKLEE-------DKPELPVEHA 1416 (2376)
T ss_pred HhhHhhhcCCCeEEEEEee--cCCCCcccCCCHHHHHHHHhhhhhhhhhcCcccceeeeEecc-------cCCCcchHHH
Confidence 4799999999988877665 3222 222 346779999999999999998864 3457789999
Q ss_pred EEEccCccccccceeeccCCCC
Q psy5955 111 YINALTRGDLASLKWIEGPLSF 132 (134)
Q Consensus 111 yy~~ln~gDl~sl~w~~~~~~~ 132 (134)
|+|+|++|||+|++|||+|++.
T Consensus 1417 fvntLtrGDlsSlrWies~~~~ 1438 (2376)
T KOG1202|consen 1417 FVNTLTRGDLSSLRWIESPLRH 1438 (2376)
T ss_pred HHHHhhhccccceeeeecchhh
Confidence 9999999999999999999873
No 3
>KOG1348|consensus
Probab=45.94 E-value=21 Score=31.83 Aligned_cols=54 Identities=28% Similarity=0.583 Sum_probs=33.6
Q ss_pred CcchHHHHhcCccceEEe-------cCccceEEeeeeCCCCCCcccchhhhhhceeccccccceeeeeccccc
Q psy5955 30 SPTYAPLLAKDLLYNVYR-------AGTWGSMRHILLDTTPDNATLQVEHAYINALTRGDLASLKWIEGPLSF 95 (134)
Q Consensus 30 ~~~y~~ql~~dL~~NV~r-------~G~WGSyRHl~l~~~~~~~~~~~~hayvN~l~rGDLsSlrWie~p~~~ 95 (134)
-.++..+|.+|| |||- .-.||+|.-= +.| +....|..+| |||=|.-|+|-.-.+
T Consensus 209 GSmfegiLp~~l--nIYatTAaNa~ESSwgtycp~------~~p--sppse~~tcL--GDlySV~WmeDSd~h 269 (477)
T KOG1348|consen 209 GSMFEGILPKNL--NIYATTAANARESSWGTYCPG------EYP--SPPSEYSTCL--GDLYSVNWMEDSDVH 269 (477)
T ss_pred cchhhhhccCCC--cEEEeecCCccccccceeCCC------CCC--CChhhccccc--ccceeeeeeccCccc
Confidence 345666788886 5554 3449999531 111 1223455554 999999999986443
No 4
>PF08043 Xin: Xin repeat; InterPro: IPR012510 The repeat has the consensus sequence GDV(K/Q/R)(T/S/G)X(R/K/T) WLFETXPLD. This repeat motif is typically found in the N terminus of the proteins, with a copy number between 2 and 28 repeats. Direct evidence for binding to and stabilising F-actin has been found in the human protein (Q702N9 from SWISSPROT) []. The homologues in mouse and chicken localise in the adherens junction complex of the intercalated disc in cardiac muscle and in the myotendon junction of skeletal muscle. mXin may co-localise with Vinculin which is known to attach the actin to the cytoplasmic membrane []. It has been shown that the amino-terminus of human xin (CMYA1) binds the EVH1 domain of Mena/VASP/EVL, and the carboxy-terminus binds the, for the filamin family unique, domain 20 of filamin C []. This confirms the proposed role of xin repeat containing proteins as F-actin-binding adapter proteins.; GO: 0003779 actin binding, 0030036 actin cytoskeleton organization, 0030054 cell junction
Probab=41.09 E-value=14 Score=18.38 Aligned_cols=9 Identities=33% Similarity=1.206 Sum_probs=6.8
Q ss_pred cccccceee
Q psy5955 118 GDLASLKWI 126 (134)
Q Consensus 118 gDl~sl~w~ 126 (134)
||+.+.+|+
T Consensus 1 GDV~~~~wl 9 (16)
T PF08043_consen 1 GDVKTTRWL 9 (16)
T ss_pred CCcceeEEE
Confidence 677888885
No 5
>smart00783 A_amylase_inhib Alpha amylase inhibitor. Alpha amylase inhibitor inhibits mammalian alpha-amylases specifically, by forming a tight stoichiometric 1:1 complex with alpha-amylase. The inhibitor has no action on plant and microbial alpha amylases.
Probab=22.54 E-value=61 Score=21.92 Aligned_cols=14 Identities=50% Similarity=1.011 Sum_probs=11.8
Q ss_pred EEecCccceEEeee
Q psy5955 45 VYRAGTWGSMRHIL 58 (134)
Q Consensus 45 V~r~G~WGSyRHl~ 58 (134)
+|+||+||-.|-++
T Consensus 33 ~Y~dg~~~pCr~~~ 46 (69)
T smart00783 33 VYTDGTWGPCRTAA 46 (69)
T ss_pred EEeCCCcceeEeeC
Confidence 79999999988654
No 6
>PF02722 MOSP_C: Major Outer Sheath Protein C-terminal region; InterPro: IPR003872 This is a family of spirochete major outer sheath protein C-terminal regions. These proteins are present on the bacterial cell surface. In Treponema denticola the major outer sheath protein (Msp) binds immobilized laminin and fibronectin supporting the hypothesis that Msp mediates the extracellular matrix binding activity of T. denticola [].
Probab=20.89 E-value=39 Score=27.32 Aligned_cols=9 Identities=44% Similarity=0.785 Sum_probs=7.3
Q ss_pred cCc-cceEEe
Q psy5955 48 AGT-WGSMRH 56 (134)
Q Consensus 48 ~G~-WGSyRH 56 (134)
-|+ ||||||
T Consensus 100 ~gk~W~sYri 109 (201)
T PF02722_consen 100 YGKVWCSYRI 109 (201)
T ss_pred EEEEeEEeee
Confidence 355 999999
No 7
>PRK11191 RNase E inhibitor protein; Provisional
Probab=19.94 E-value=35 Score=25.78 Aligned_cols=47 Identities=19% Similarity=0.177 Sum_probs=29.2
Q ss_pred CCCCceEEEEEecCCCCCCCCCCCcchHHHHhcCccceEEecCccceE
Q psy5955 7 EPGGLGARCVFITDAKQPPFSPSSPTYAPLLAKDLLYNVYRAGTWGSM 54 (134)
Q Consensus 7 Epgg~~iR~vfi~d~~ap~f~~~~~~y~~ql~~dL~~NV~r~G~WGSy 54 (134)
++.|..+-|+-+.....|....-.....+.+++=--.|+.-+| ||||
T Consensus 68 ~edg~~~~~~~~~~e~~l~~e~I~~~~~~L~~LA~k~~g~YDG-WGT~ 114 (138)
T PRK11191 68 LEDGDVIFCCDAVSEVALNAELIDAQVEQLLALAEKFDVEYDG-WGTY 114 (138)
T ss_pred cCCCCeEEEEEEEecCCCCHHHHHHHHHHHHHHHHHhCCCccC-cccc
Confidence 3567767775555555555444444455555555567877777 9999
No 8
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=16.65 E-value=1.3e+02 Score=22.82 Aligned_cols=44 Identities=7% Similarity=0.022 Sum_probs=31.6
Q ss_pred EEEEEecCCCCCCCCCCCcchHHHHhcCccceEEecCccceEEee
Q psy5955 13 ARCVFITDAKQPPFSPSSPTYAPLLAKDLLYNVYRAGTWGSMRHI 57 (134)
Q Consensus 13 iR~vfi~d~~ap~f~~~~~~y~~ql~~dL~~NV~r~G~WGSyRHl 57 (134)
.-++|+.|-.. -++..+-....+.+.++++=|+.||.||..|+.
T Consensus 70 ~vv~i~GDG~f-~~~~~el~ta~~~~~p~~ivV~nN~~~~~~~~~ 113 (183)
T cd02005 70 RVILLVGDGSF-QMTVQELSTMIRYGLNPIIFLINNDGYTIERAI 113 (183)
T ss_pred eEEEEECCchh-hccHHHHHHHHHhCCCCEEEEEECCCcEEEEEe
Confidence 34555666533 455555556667788999999999999998864
No 9
>PRK09354 recA recombinase A; Provisional
Probab=16.23 E-value=1.9e+02 Score=24.90 Aligned_cols=56 Identities=16% Similarity=0.281 Sum_probs=41.5
Q ss_pred ccCCCCceEEEEEecCCCCCCCCC---------CCcchHHHHhcCccceEEe-cCccceEEeeeeC
Q psy5955 5 KQEPGGLGARCVFITDAKQPPFSP---------SSPTYAPLLAKDLLYNVYR-AGTWGSMRHILLD 60 (134)
Q Consensus 5 R~Epgg~~iR~vfi~d~~ap~f~~---------~~~~y~~ql~~dL~~NV~r-~G~WGSyRHl~l~ 60 (134)
|.|.-|+++|..++-++-+|.|.. .-..+.+.++.-...++.+ .|.|=+|---.+-
T Consensus 235 ~~~~~G~~~r~~vvKnk~~~p~~~a~~~i~~~~Gi~~~~~~~d~a~~~g~i~k~g~w~~~~~~~~~ 300 (349)
T PRK09354 235 GDEVIGNRTKVKVVKNKVAPPFKQAEFDIMYGEGISREGELIDLGVELGIIEKSGAWYSYNGEKIG 300 (349)
T ss_pred CCceecceEEEEEEecccCCCCCceEEEEEcCCccchhhhHHHHHHhCCcEEcccCEEEECCceec
Confidence 445668999999999999998642 2234567788888888885 8889888655553
No 10
>COG3076 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=15.88 E-value=40 Score=25.23 Aligned_cols=43 Identities=16% Similarity=0.247 Sum_probs=24.0
Q ss_pred CCceEEEEEecCCCCCCCCCCCcchHHHHhc----CccceEEecCccceEEe
Q psy5955 9 GGLGARCVFITDAKQPPFSPSSPTYAPLLAK----DLLYNVYRAGTWGSMRH 56 (134)
Q Consensus 9 gg~~iR~vfi~d~~ap~f~~~~~~y~~ql~~----dL~~NV~r~G~WGSyRH 56 (134)
.|+.|-|.=|.+.. .++......|.++ ==..++.-+| ||+|--
T Consensus 67 dG~~i~C~Diisev----~L~aeiIDaQ~e~l~~L~Ek~~~~YDG-WGTY~E 113 (135)
T COG3076 67 DGDIVICCDIISEV----ALNAELIDAQVEQLMPLAEKFDVEYDG-WGTYFE 113 (135)
T ss_pred CCCEEEEeehhhhh----hcCHHHHHHHHHHHHHHHHHhCceecC-ceeecc
Confidence 56777776665432 2344444444333 2235666666 999954
Done!