Query psy5955
Match_columns 134
No_of_seqs 140 out of 238
Neff 5.3
Searched_HMMs 29240
Date Fri Aug 16 22:52:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5955.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5955hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vz8_A Fatty acid synthase; tr 99.3 1.6E-12 5.3E-17 129.2 3.8 119 2-124 1458-1580(2512)
2 3slk_A Polyketide synthase ext 33.4 12 0.00041 33.7 0.8 46 75-123 213-258 (795)
3 3ced_A Methionine import ATP-b 31.2 21 0.00072 23.7 1.6 40 4-49 13-54 (98)
4 2qrr_A Methionine import ATP-b 25.1 83 0.0028 20.5 3.8 40 4-49 14-57 (101)
5 2qsw_A Methionine import ATP-b 19.8 1E+02 0.0035 20.0 3.4 36 8-49 21-57 (100)
6 2lw6_A Avrpiz-T protein; plant 19.5 45 0.0015 21.6 1.4 11 46-56 10-21 (80)
7 2ja4_A T-cell surface glycopro 18.2 39 0.0013 22.6 1.0 18 43-60 21-38 (101)
8 1by2_A MAC-2 binding protein; 15.3 55 0.0019 22.6 1.2 13 44-56 24-36 (119)
9 2oya_A Macrophage receptor mar 14.2 63 0.0021 21.7 1.2 14 43-56 18-31 (102)
10 1g86_A Charcot-leyden crystal 14.0 56 0.0019 22.9 0.9 20 41-60 62-84 (142)
No 1
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*
Probab=99.26 E-value=1.6e-12 Score=129.15 Aligned_cols=119 Identities=36% Similarity=0.726 Sum_probs=99.4
Q ss_pred ceeccCCCCceEEEEEecCC----CCCCCCCCCcchHHHHhcCccceEEecCccceEEeeeeCCCCCCcccchhhhhhce
Q psy5955 2 DCVKQEPGGLGARCVFITDA----KQPPFSPSSPTYAPLLAKDLLYNVYRAGTWGSMRHILLDTTPDNATLQVEHAYINA 77 (134)
Q Consensus 2 nClR~Epgg~~iR~vfi~d~----~ap~f~~~~~~y~~ql~~dL~~NV~r~G~WGSyRHl~l~~~~~~~~~~~~hayvN~ 77 (134)
+|||.|+.+.+++++++.+. .+|.|+..+.+|.++++.|+..|++|+|.||.+||++++ ...+....+++++++
T Consensus 1458 r~l~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~R~~~~~--~~~~~~~~~~~~l~~ 1535 (2512)
T 2vz8_A 1458 NCLRKEPGGHRIRCVLVSNLSSTSPAPEMHPSSSELQKVLQGDLVMNVYRDGAWGAFRHFPLE--QDRPEKQTEHAFVNV 1535 (2512)
T ss_dssp HHHTTSGGGTTSCCEEEECCCCSTTCCCCCCSSSHHHHHHHSCCSEEEEETTEEEEECCEECC--CCCCEEEESCEEEEE
T ss_pred HHHHhcCCCCCEEEEEecCCcccccccccchhhHHHHHHHhcCCceEEEEcCccceEEEeecc--cccccccccceEEEc
Confidence 69999999999999999875 578888889999999999999999999999999999987 333333467889999
Q ss_pred eccccccceeeeeccccccccccccccceeEeEEEEccCccccccce
Q psy5955 78 LTRGDLASLKWIEGPLSFYNITSVILLLQIEHAYINALTRGDLASLK 124 (134)
Q Consensus 78 l~rGDLsSlrWie~p~~~~~~~~~~~~~~~~~vyy~~ln~gDl~sl~ 124 (134)
.++|+|+||+|++.|.....+ ..++..++++.++.+|++|++...
T Consensus 1536 ~~~g~l~sl~~~~~~~~~~~~--l~~~eVlVkV~aaglN~~Dv~~~~ 1580 (2512)
T 2vz8_A 1536 LSRGDLSSIRWVCSPLHYALP--ASCQDRLCSVYYTSLNFRDVMLAT 1580 (2512)
T ss_dssp SSTTCTTSEEEEECTTTTCCC--HHHHTTEEEEEEEECCHHHHHHHH
T ss_pred cCCCCcCceEEEecCcccccC--CCCCceEEEEEecccCHHHHHHHh
Confidence 999999999999987543111 124678999999999999998643
No 2
>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}
Probab=33.35 E-value=12 Score=33.67 Aligned_cols=46 Identities=13% Similarity=-0.013 Sum_probs=34.4
Q ss_pred hceeccccccceeeeeccccccccccccccceeEeEEEEccCccccccc
Q psy5955 75 INALTRGDLASLKWIEGPLSFYNITSVILLLQIEHAYINALTRGDLASL 123 (134)
Q Consensus 75 vN~l~rGDLsSlrWie~p~~~~~~~~~~~~~~~~~vyy~~ln~gDl~sl 123 (134)
+..-..|.+.+|+|.+.|..... -.++..++.+.++.+|+.|++..
T Consensus 213 l~~~~~G~~~~L~~~~~~~p~~~---~~~~eVlV~V~a~gin~~D~~~~ 258 (795)
T 3slk_A 213 LEATRPGSLDGLALVDEPTATAP---LGDGEVRIAMRAAGVNFRDALIA 258 (795)
T ss_dssp EEESSTTSSTTEEECCCHHHHSC---CCSSEEEEEEEEEEECHHHHHHT
T ss_pred EecCCCCCccceEEEeCCccCCC---CCCCEEEEEEEEEccCHHHHHHH
Confidence 34446799999999987642111 24578899999999999999764
No 3
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=31.18 E-value=21 Score=23.73 Aligned_cols=40 Identities=20% Similarity=0.289 Sum_probs=30.7
Q ss_pred eccC-CCCceEEEEEecCCCCCCCCCCCcchHHHHhc-CccceEEecC
Q psy5955 4 VKQE-PGGLGARCVFITDAKQPPFSPSSPTYAPLLAK-DLLYNVYRAG 49 (134)
Q Consensus 4 lR~E-pgg~~iR~vfi~d~~ap~f~~~~~~y~~ql~~-dL~~NV~r~G 49 (134)
|+.| |+|..+|..|..+. ...|..++..++ |+.+|++..+
T Consensus 13 L~~~~~~~~lvrL~f~g~~------~~~PvIs~l~~~~~v~vnIL~g~ 54 (98)
T 3ced_A 13 LEPLEKDAYIVRLVFAGST------TTEPIVSSLSTAYDIKINILEAN 54 (98)
T ss_dssp TCSCCTTCEEEEEEEEEES------CHHHHHHHHHHHHTCCCEEEEEE
T ss_pred hhccCCCCEEEEEEECCCc------cCchHHHHHHHHHCCcEEEEEEE
Confidence 5667 47788999998664 246888888876 9999999844
No 4
>2qrr_A Methionine import ATP-binding protein METN; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 1.71A {Vibrio parahaemolyticus} SCOP: d.58.18.13
Probab=25.08 E-value=83 Score=20.51 Aligned_cols=40 Identities=13% Similarity=0.208 Sum_probs=29.3
Q ss_pred eccCC-CC--ceEEEEEecCCCCCCCCCCCcchHHHHhc-CccceEEecC
Q psy5955 4 VKQEP-GG--LGARCVFITDAKQPPFSPSSPTYAPLLAK-DLLYNVYRAG 49 (134)
Q Consensus 4 lR~Ep-gg--~~iR~vfi~d~~ap~f~~~~~~y~~ql~~-dL~~NV~r~G 49 (134)
|+.++ +| ..+|..|..+. ...|..++..++ |+.+|++..+
T Consensus 14 l~~~~~~~~~~lv~l~f~g~~------~~~pvis~l~~~~~v~vnIl~g~ 57 (101)
T 2qrr_A 14 LQPNRVEGSYPLVRMEFTGAT------VDAPLMSQISRKYNIDVSILSSD 57 (101)
T ss_dssp EESSCCTTCEEEEEEEECTTS------CSSCHHHHHHHHSCCEEEEEEEE
T ss_pred hhcccCCCCcEEEEEEEcCCC------cCchHHHHHHHHhCCCEEEEEee
Confidence 34554 46 68999997553 357888888887 9999998844
No 5
>2qsw_A Methionine import ATP-binding protein METN 2; ABC transporter, structural genomics, APC87322.1, PSI-2, protein structure initiative; 1.50A {Enterococcus faecalis} SCOP: d.58.18.13
Probab=19.78 E-value=1e+02 Score=19.98 Aligned_cols=36 Identities=14% Similarity=0.316 Sum_probs=27.9
Q ss_pred CCCceEEEEEecCCCCCCCCCCCcchHHHHhc-CccceEEecC
Q psy5955 8 PGGLGARCVFITDAKQPPFSPSSPTYAPLLAK-DLLYNVYRAG 49 (134)
Q Consensus 8 pgg~~iR~vfi~d~~ap~f~~~~~~y~~ql~~-dL~~NV~r~G 49 (134)
++|..+|..|..+. ...|..++..++ |+.+|++..+
T Consensus 21 ~~~~lv~l~f~g~~------~~~pvis~l~~~~~v~vnIl~g~ 57 (100)
T 2qsw_A 21 PNGKIVRLLFHGEQ------AKLPIISHIVQEYQVEVSIIQGN 57 (100)
T ss_dssp CSSEEEEEEEESCS------CSSCHHHHHHHHHTCEEEEEEEE
T ss_pred CCCEEEEEEEcCCC------cCchHHHHHHHHhCCCEEEEEee
Confidence 45778999998654 346888888876 9999999844
No 6
>2lw6_A Avrpiz-T protein; plant resistance gene, avirulence protein, protein degradation, apoptosis; NMR {Magnaporthe oryzae}
Probab=19.46 E-value=45 Score=21.58 Aligned_cols=11 Identities=36% Similarity=1.041 Sum_probs=8.2
Q ss_pred EecCc-cceEEe
Q psy5955 46 YRAGT-WGSMRH 56 (134)
Q Consensus 46 ~r~G~-WGSyRH 56 (134)
+-+|. ||+.|.
T Consensus 10 lyngrhwgtirk 21 (80)
T 2lw6_A 10 LYNGRHWGTIRK 21 (80)
T ss_dssp EETTEEEEEEEE
T ss_pred eEcCccceeeee
Confidence 44677 999975
No 7
>2ja4_A T-cell surface glycoprotein CD5; SRCR, membrane, polymorphism, crystallography, transmembrane, innate immunity, phosphorylation, immune system; 2.21A {Homo sapiens} PDB: 2ott_X
Probab=18.21 E-value=39 Score=22.58 Aligned_cols=18 Identities=11% Similarity=0.268 Sum_probs=12.8
Q ss_pred ceEEecCccceEEeeeeC
Q psy5955 43 YNVYRAGTWGSMRHILLD 60 (134)
Q Consensus 43 ~NV~r~G~WGSyRHl~l~ 60 (134)
+=|+.+|+||+.-.-..+
T Consensus 21 VEV~~~g~WGtVCdd~w~ 38 (101)
T 2ja4_A 21 VEVRQGAQWAALCDSSSA 38 (101)
T ss_dssp EEEESSSCCEEEECCCSS
T ss_pred EEEEECCEEEEEECCCCC
Confidence 346778999999664443
No 8
>1by2_A MAC-2 binding protein; extracellular module, scavenger receptor, tumour-associated extracellular matrix, glycosylated protein; HET: NAG; 2.00A {Homo sapiens} SCOP: d.170.1.1
Probab=15.34 E-value=55 Score=22.57 Aligned_cols=13 Identities=23% Similarity=0.907 Sum_probs=10.4
Q ss_pred eEEecCccceEEe
Q psy5955 44 NVYRAGTWGSMRH 56 (134)
Q Consensus 44 NV~r~G~WGSyRH 56 (134)
=|+.+|+||+.-.
T Consensus 24 EV~~~g~WGtVCd 36 (119)
T 1by2_A 24 EIFYRGQWGTVCD 36 (119)
T ss_dssp EEEETTEEEEEBC
T ss_pred EEEECCEEEEEEc
Confidence 4788999999853
No 9
>2oya_A Macrophage receptor marco; extracellular matrix, scavenger receptor cysteine-rich (SRCR macrophage receptor, ligand binding, basic cluster; 1.77A {Mus musculus} PDB: 2oy3_A
Probab=14.18 E-value=63 Score=21.70 Aligned_cols=14 Identities=29% Similarity=0.741 Sum_probs=10.6
Q ss_pred ceEEecCccceEEe
Q psy5955 43 YNVYRAGTWGSMRH 56 (134)
Q Consensus 43 ~NV~r~G~WGSyRH 56 (134)
+=||.+|+||+.-.
T Consensus 18 vEV~~~g~WGtVCd 31 (102)
T 2oya_A 18 AEVYYNNEWGTICD 31 (102)
T ss_dssp EEEEETTEEEEEBC
T ss_pred EEEEECCEEEEEEC
Confidence 34778899999853
No 10
>1g86_A Charcot-leyden crystal protein; beta barrel, hydrolase; 1.80A {Homo sapiens} SCOP: b.29.1.3 PDB: 1lcl_A 1qkq_A* 1hdk_A*
Probab=14.04 E-value=56 Score=22.91 Aligned_cols=20 Identities=15% Similarity=0.448 Sum_probs=15.1
Q ss_pred ccceEEecCccceE-E--eeeeC
Q psy5955 41 LLYNVYRAGTWGSM-R--HILLD 60 (134)
Q Consensus 41 L~~NV~r~G~WGSy-R--Hl~l~ 60 (134)
.+.|-+.+|.||.= | ++|+.
T Consensus 62 IV~Ns~~~g~Wg~EEr~~~~PF~ 84 (142)
T 1g86_A 62 VVMNSREYGAWKQQVESKNMPFQ 84 (142)
T ss_dssp EEEEEEETTEECCCEEECCCCCC
T ss_pred EEEeCCcCCEeeccEEeCCCCcc
Confidence 77899999999976 3 34554
Done!