Query psy5955
Match_columns 134
No_of_seqs 140 out of 238
Neff 5.3
Searched_HMMs 13730
Date Fri Aug 16 22:52:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5955.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/5955hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1tt7a1 b.35.1.2 (A:2-127,A:29 69.1 0.82 6E-05 31.1 1.4 42 79-125 11-52 (162)
2 d1iz0a1 b.35.1.2 (A:1-98,A:270 52.2 3.2 0.00023 27.4 1.9 37 85-126 12-48 (131)
3 d1qora1 b.35.1.2 (A:2-112,A:29 48.1 5.1 0.00037 26.3 2.4 39 80-123 9-47 (147)
4 d1o89a1 b.35.1.2 (A:1-115,A:29 37.9 8.1 0.00059 25.6 2.2 39 80-123 9-47 (146)
5 d3bzwa1 c.23.10.9 (A:38-285) U 34.6 18 0.0013 22.8 3.5 49 3-53 1-51 (248)
6 d2qswa1 d.58.18.13 (A:256-345) 32.4 17 0.0013 22.2 3.0 39 4-48 7-46 (90)
7 d1xa0a1 b.35.1.2 (A:1-118,A:29 29.2 13 0.00097 24.3 2.1 39 80-123 12-50 (152)
8 d1by2a_ d.170.1.1 (A:) M2BP {H 23.0 14 0.001 23.3 1.2 13 44-56 21-33 (116)
9 d2nwta1 b.129.2.2 (A:1-61) Unc 22.2 24 0.0018 20.7 2.1 37 9-53 24-60 (61)
10 d1gu7a1 b.35.1.2 (A:23-160,A:3 15.9 32 0.0024 22.1 1.8 36 85-125 20-55 (175)
No 1
>d1tt7a1 b.35.1.2 (A:2-127,A:295-330) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}
Probab=69.12 E-value=0.82 Score=31.12 Aligned_cols=42 Identities=10% Similarity=-0.202 Sum_probs=33.4
Q ss_pred ccccccceeeeeccccccccccccccceeEeEEEEccCcccccccee
Q psy5955 79 TRGDLASLKWIEGPLSFYNITSVILLLQIEHAYINALTRGDLASLKW 125 (134)
Q Consensus 79 ~rGDLsSlrWie~p~~~~~~~~~~~~~~~~~vyy~~ln~gDl~sl~w 125 (134)
+.||-.+|++-+.++.. -.++..++++.|+++|++|+...+.
T Consensus 11 ~~g~~~~l~~~~v~~p~-----l~~~eVLVkV~a~gin~~D~~~~~g 52 (162)
T d1tt7a1 11 KNADDVSVHVKTISTED-----LPKDGVLIKVAYSGINYKDGLAGKA 52 (162)
T ss_dssp CGGGSCCCEEEEEESSS-----SCSSSEEEEECCEEECHHHHHHTST
T ss_pred ecCCCeEEEEEEcCCCC-----CCCCEEEEEEEEecccchhhheeee
Confidence 46898999997777642 2357899999999999999877655
No 2
>d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}
Probab=52.16 E-value=3.2 Score=27.38 Aligned_cols=37 Identities=11% Similarity=-0.165 Sum_probs=29.2
Q ss_pred ceeeeeccccccccccccccceeEeEEEEccCccccccceee
Q psy5955 85 SLKWIEGPLSFYNITSVILLLQIEHAYINALTRGDLASLKWI 126 (134)
Q Consensus 85 SlrWie~p~~~~~~~~~~~~~~~~~vyy~~ln~gDl~sl~w~ 126 (134)
.|+|.+.|... | .++..++++.++++|+.|+...++.
T Consensus 12 ~l~~~e~~~p~--p---~~~eVlVkv~a~gin~~D~~~~~G~ 48 (131)
T d1iz0a1 12 PLELVDLPEPE--A---EEGEVVLRVEAVGLNFADHLMRLGA 48 (131)
T ss_dssp CEEEEECCCCC--C---CTTEEEEEEEEEEECHHHHHHHHTC
T ss_pred CCEEEEccCCC--C---CCCEEEEEEEEEecccccccccccc
Confidence 37888888642 2 3578999999999999999887663
No 3
>d1qora1 b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}
Probab=48.06 E-value=5.1 Score=26.33 Aligned_cols=39 Identities=10% Similarity=-0.231 Sum_probs=30.9
Q ss_pred cccccceeeeeccccccccccccccceeEeEEEEccCccccccc
Q psy5955 80 RGDLASLKWIEGPLSFYNITSVILLLQIEHAYINALTRGDLASL 123 (134)
Q Consensus 80 rGDLsSlrWie~p~~~~~~~~~~~~~~~~~vyy~~ln~gDl~sl 123 (134)
.|.-..|++.+.|... -.++..++++.++++|+.|+...
T Consensus 9 ~G~pe~l~~~e~~~P~-----p~~~eVlVkv~a~~in~~D~~~~ 47 (147)
T d1qora1 9 HGGPEVLQAVEFTPAD-----PAENEIQVENKAIGINFIDTYIR 47 (147)
T ss_dssp CCSGGGCEEEECCCCC-----CCTTEEEEEEEEEECCHHHHHHH
T ss_pred cCCCceeEEEEecCCC-----CCCCEEEEEEEEecccceeeeee
Confidence 5777789999888632 23578899999999999998654
No 4
>d1o89a1 b.35.1.2 (A:1-115,A:293-323) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}
Probab=37.88 E-value=8.1 Score=25.59 Aligned_cols=39 Identities=8% Similarity=-0.221 Sum_probs=25.2
Q ss_pred cccccceeeeeccccccccccccccceeEeEEEEccCccccccc
Q psy5955 80 RGDLASLKWIEGPLSFYNITSVILLLQIEHAYINALTRGDLASL 123 (134)
Q Consensus 80 rGDLsSlrWie~p~~~~~~~~~~~~~~~~~vyy~~ln~gDl~sl 123 (134)
.|....+..-+.+... -.++..++.+.|+++|+.|++..
T Consensus 9 ~~~~~~l~i~~v~~p~-----~~~geVlVkV~a~gin~~D~~~~ 47 (146)
T d1o89a1 9 QDGKTLASVQTLDESR-----LPEGDVTVDVHWSSLNYKDALAI 47 (146)
T ss_dssp C---CEEEEEECCGGG-----SCSCSEEEEEEEEECCHHHHHHH
T ss_pred CCCceEEEEEEcCCCC-----CCCCEEEEEEeeccCccceeeEE
Confidence 4455555555555422 23578999999999999998644
No 5
>d3bzwa1 c.23.10.9 (A:38-285) Uncharacterized protein BT2961 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=34.64 E-value=18 Score=22.77 Aligned_cols=49 Identities=20% Similarity=0.261 Sum_probs=34.4
Q ss_pred eeccCCCCceEEEEEecCCC-CCCCC-CCCcchHHHHhcCccceEEecCccce
Q psy5955 3 CVKQEPGGLGARCVFITDAK-QPPFS-PSSPTYAPLLAKDLLYNVYRAGTWGS 53 (134)
Q Consensus 3 ClR~Epgg~~iR~vfi~d~~-ap~f~-~~~~~y~~ql~~dL~~NV~r~G~WGS 53 (134)
|+|.=.+|++| +|+.|+- ..... ...+-|.++|++-|=++|+--|.-|.
T Consensus 1 ~~~~p~~~kkI--~~~GDS~T~g~~~~~~~~~~~~~l~~~l~~~v~N~g~~G~ 51 (248)
T d3bzwa1 1 CIQHPWQGKKV--GYIGDSITDPNCYGDNIKKYWDFLKEWLGITPFVYGISGR 51 (248)
T ss_dssp CCCCTTTTCEE--EEEESTTTCTTTTGGGCCCHHHHHHHHHCCEEEECCCTTC
T ss_pred CCCCCCCCCEE--EEEehHHccCCCCCCccchHHHHHHHHCCCcEEEeEecCC
Confidence 88877788754 8889872 22222 23456889999988889888887663
No 6
>d2qswa1 d.58.18.13 (A:256-345) Methionine import ATP-binding protein MetN2 {Enterococcus faecalis [TaxId: 1351]}
Probab=32.38 E-value=17 Score=22.22 Aligned_cols=39 Identities=15% Similarity=0.288 Sum_probs=28.9
Q ss_pred eccCCCCceEEEEEecCCCCCCCCCCCcchHHHH-hcCccceEEec
Q psy5955 4 VKQEPGGLGARCVFITDAKQPPFSPSSPTYAPLL-AKDLLYNVYRA 48 (134)
Q Consensus 4 lR~Epgg~~iR~vfi~d~~ap~f~~~~~~y~~ql-~~dL~~NV~r~ 48 (134)
+.+.|.|..+|..|..+. ..+|..++.. +-|+-+|++..
T Consensus 7 l~~~p~g~lvrl~f~g~~------a~~Pvis~l~r~~~i~vnIL~g 46 (90)
T d2qswa1 7 LEQYPNGKIVRLLFHGEQ------AKLPIISHIVQEYQVEVSIIQG 46 (90)
T ss_dssp HHHSCSSEEEEEEEESCS------CSSCHHHHHHHHHTCEEEEEEE
T ss_pred HhhCCCCEEEEEEEcCCc------cCccHHHHHHHHhCCcEEEEEE
Confidence 357799999999998764 3456666654 45899999883
No 7
>d1xa0a1 b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}
Probab=29.22 E-value=13 Score=24.27 Aligned_cols=39 Identities=3% Similarity=-0.271 Sum_probs=27.4
Q ss_pred cccccceeeeeccccccccccccccceeEeEEEEccCccccccc
Q psy5955 80 RGDLASLKWIEGPLSFYNITSVILLLQIEHAYINALTRGDLASL 123 (134)
Q Consensus 80 rGDLsSlrWie~p~~~~~~~~~~~~~~~~~vyy~~ln~gDl~sl 123 (134)
.|+-.++.+-+.|+.. -.++..++.+.++.+|+.|++..
T Consensus 12 ~~~~~~~~i~~v~~P~-----~~~~eVlVkV~a~gin~~D~~~~ 50 (152)
T d1xa0a1 12 TETEFTAGVQTISMDD-----LPEGDVLVRVHYSSVNYKDGLAS 50 (152)
T ss_dssp ETTEEEEEEEEEEGGG-----SCSCSEEEEEEEEECCHHHHHHT
T ss_pred cCCceEEEEEEccCCC-----CCCCEEEEEEEEeCCChHHHHHH
Confidence 4555566666666532 23578999999999999997653
No 8
>d1by2a_ d.170.1.1 (A:) M2BP {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.04 E-value=14 Score=23.25 Aligned_cols=13 Identities=23% Similarity=0.907 Sum_probs=10.6
Q ss_pred eEEecCccceEEe
Q psy5955 44 NVYRAGTWGSMRH 56 (134)
Q Consensus 44 NV~r~G~WGSyRH 56 (134)
=||.+|+||+.-.
T Consensus 21 EV~~~g~Wg~VC~ 33 (116)
T d1by2a_ 21 EIFYRGQWGTVCD 33 (116)
T ss_dssp EEEETTEEEEEBC
T ss_pred EEEECCEEEeEEC
Confidence 4789999998854
No 9
>d2nwta1 b.129.2.2 (A:1-61) Uncharacterized protein AF2212 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=22.16 E-value=24 Score=20.65 Aligned_cols=37 Identities=27% Similarity=0.384 Sum_probs=19.6
Q ss_pred CCceEEEEEecCCCCCCCCCCCcchHHHHhcCccceEEecCccce
Q psy5955 9 GGLGARCVFITDAKQPPFSPSSPTYAPLLAKDLLYNVYRAGTWGS 53 (134)
Q Consensus 9 gg~~iR~vfi~d~~ap~f~~~~~~y~~ql~~dL~~NV~r~G~WGS 53 (134)
.|+++|..+- ...-...+..|.-.+.+++ +|+|.|-|
T Consensus 24 ~Gek~~i~ie--~~vepi~l~~pVsde~ikk------~r~~sw~s 60 (61)
T d2nwta1 24 EGERVKIKLE--LKVEPIDLGEPVSVEEIKK------IRDGTWMS 60 (61)
T ss_dssp TTEEEEEECC--CCCCCCCCCCCCCCCGGGC------SSCCCCCC
T ss_pred CCcEEEEEEE--EEecceeccccccHHHHHH------Hhcccccc
Confidence 3677776653 2233344444444444443 57777765
No 10
>d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}
Probab=15.86 E-value=32 Score=22.14 Aligned_cols=36 Identities=8% Similarity=-0.110 Sum_probs=26.5
Q ss_pred ceeeeeccccccccccccccceeEeEEEEccCcccccccee
Q psy5955 85 SLKWIEGPLSFYNITSVILLLQIEHAYINALTRGDLASLKW 125 (134)
Q Consensus 85 SlrWie~p~~~~~~~~~~~~~~~~~vyy~~ln~gDl~sl~w 125 (134)
.+..++.|... -.+++.++++.+++++..|+...+.
T Consensus 20 ~l~~~~~p~p~-----~~~~eVlVkv~a~~i~~~D~~~~~G 55 (175)
T d1gu7a1 20 FTQSFEIDDDN-----LAPNEVIVKTLGSPVNPSDINQIQG 55 (175)
T ss_dssp EEEEEEECTTS-----CCTTEEEEEEEEEEECHHHHHHHHT
T ss_pred EEEEEECCCCC-----CCcCEEEEEEEEeccCcceeEEEec
Confidence 46667776421 1357899999999999999987654
Done!