RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5955
         (134 letters)



>d1ja1a1 b.43.4.1 (A:240-518) NADPH-cytochrome p450 reductase {Rat
          (Rattus norvegicus) [TaxId: 10116]}
          Length = 279

 Score = 25.8 bits (56), Expect = 2.1
 Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 4/51 (7%)

Query: 20 DAKQPPFSPSSPTYAPLLAKDLLYNVYRAGTWGSMRHILLDTTPDNATLQV 70
          + ++PPF   +P  A + A   L      GT   + H+ LD +      + 
Sbjct: 31 ENQKPPFDAKNPFLAAVTANRKLNQ----GTERHLMHLELDISDSKIRYES 77


>d2alaa2 f.10.1.1 (A:1-292) Fusion glycoprotein E1 {Semliki forest
           virus [TaxId: 11033]}
          Length = 292

 Score = 25.6 bits (56), Expect = 2.2
 Identities = 8/28 (28%), Positives = 12/28 (42%)

Query: 67  TLQVEHAYINALTRGDLASLKWIEGPLS 94
             Q    Y+N      +   ++I GPLS
Sbjct: 140 VNQTVDVYVNGDHAVTIGGTQFIFGPLS 167



 Score = 25.2 bits (55), Expect = 3.2
 Identities = 7/23 (30%), Positives = 11/23 (47%)

Query: 109 HAYINALTRGDLASLKWIEGPLS 131
             Y+N      +   ++I GPLS
Sbjct: 145 DVYVNGDHAVTIGGTQFIFGPLS 167


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.137    0.428 

Gapped
Lambda     K      H
   0.267   0.0629    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 484,582
Number of extensions: 18747
Number of successful extensions: 30
Number of sequences better than 10.0: 1
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 5
Length of query: 134
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 58
Effective length of database: 1,364,116
Effective search space: 79118728
Effective search space used: 79118728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.5 bits)