BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5960
(121 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1HV5|A Chain A, Crystal Structure Of The Stromelysin-3 (Mmp-11) Catalytic
Domain Complexed With A Phosphinic Inhibitor
pdb|1HV5|B Chain B, Crystal Structure Of The Stromelysin-3 (Mmp-11) Catalytic
Domain Complexed With A Phosphinic Inhibitor
pdb|1HV5|C Chain C, Crystal Structure Of The Stromelysin-3 (Mmp-11) Catalytic
Domain Complexed With A Phosphinic Inhibitor
pdb|1HV5|D Chain D, Crystal Structure Of The Stromelysin-3 (Mmp-11) Catalytic
Domain Complexed With A Phosphinic Inhibitor
pdb|1HV5|E Chain E, Crystal Structure Of The Stromelysin-3 (Mmp-11) Catalytic
Domain Complexed With A Phosphinic Inhibitor
pdb|1HV5|F Chain F, Crystal Structure Of The Stromelysin-3 (Mmp-11) Catalytic
Domain Complexed With A Phosphinic Inhibitor
Length = 165
Score = 90.1 bits (222), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 43/79 (54%), Positives = 54/79 (68%)
Query: 15 RGRLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFF 74
R ++R + AL VWS+ + LTF EV++ RADI+I F + H D PFDGPG ILAHAFF
Sbjct: 27 REQVRQTVAEALQVWSEVTPLTFTEVHEGRADIMIDFARYWHGDNLPFDGPGGILAHAFF 86
Query: 75 PGSGRGGDAHFDIDEDWMV 93
P + R GD HFD DE W +
Sbjct: 87 PKTHREGDVHFDYDETWTI 105
>pdb|1FBL|A Chain A, Structure Of Full-Length Porcine Synovial Collagenase
(Mmp1) Reveals A C-Terminal Domain Containing A
Calcium-Linked, Four-Bladed Beta- Propeller
Length = 370
Score = 85.9 bits (211), Expect = 6e-18, Method: Composition-based stats.
Identities = 50/119 (42%), Positives = 71/119 (59%), Gaps = 8/119 (6%)
Query: 5 HHPKRVRHYDRGRLRDELRRALD----VWSKHSKLTFREVNDDRADILIYFEKENHWDGY 60
H R+ +Y R+++ RA++ +WS S LTF +V++ +ADI+I F + +H D
Sbjct: 14 HLTYRIENYTPDLSREDVDRAIEKAFQLWSNVSPLTFTKVSEGQADIMISFVRGDHRDNS 73
Query: 61 PFDGPGKILAHAFFPGSGRGGDAHFDIDEDWMV----LGVSRSANADEGKSLELANADE 115
PFDGPG LAHAF PG G GGDAHFD DE W + R A + G SL L+++ +
Sbjct: 74 PFDGPGGNLAHAFQPGPGIGGDAHFDEDERWTKNFRDYNLYRVAAHELGHSLGLSHSTD 132
>pdb|1CK7|A Chain A, Gelatinase A (Full-Length)
pdb|1GXD|A Chain A, Prommp-2TIMP-2 Complex
pdb|1GXD|B Chain B, Prommp-2TIMP-2 Complex
Length = 631
Score = 85.9 bits (211), Expect = 6e-18, Method: Composition-based stats.
Identities = 39/74 (52%), Positives = 48/74 (64%)
Query: 20 DELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGR 79
D RA VWS + L F ++D ADI+I F + H DGYPFDG +LAHAF PG+G
Sbjct: 113 DAFARAFQVWSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGTGV 172
Query: 80 GGDAHFDIDEDWMV 93
GGD+HFD DE W +
Sbjct: 173 GGDSHFDDDELWTL 186
>pdb|1EAK|A Chain A, Catalytic Domain Of Prommp-2 E404q Mutant
pdb|1EAK|B Chain B, Catalytic Domain Of Prommp-2 E404q Mutant
pdb|1EAK|C Chain C, Catalytic Domain Of Prommp-2 E404q Mutant
pdb|1EAK|D Chain D, Catalytic Domain Of Prommp-2 E404q Mutant
Length = 421
Score = 85.1 bits (209), Expect = 1e-17, Method: Composition-based stats.
Identities = 39/74 (52%), Positives = 48/74 (64%)
Query: 20 DELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGR 79
D RA VWS + L F ++D ADI+I F + H DGYPFDG +LAHAF PG+G
Sbjct: 111 DAFARAFQVWSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGTGV 170
Query: 80 GGDAHFDIDEDWMV 93
GGD+HFD DE W +
Sbjct: 171 GGDSHFDDDELWTL 184
>pdb|2Y6D|A Chain A, The Discovery Of Mmp7 Inhibitors Exploiting A Novel
Selectivity Trigger
Length = 174
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 62/99 (62%), Gaps = 5/99 (5%)
Query: 22 LRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGRGG 81
+ +AL++W K L FR+V ADI+I F + H D YPFDGPG LAHAF PG+G GG
Sbjct: 36 VSKALNMWGKEIPLHFRKVVWGTADIMIGFARGAHGDSYPFDGPGNTLAHAFAPGTGLGG 95
Query: 82 DAHFDIDEDWM---VLGVS--RSANADEGKSLELANADE 115
DAHFD DE W LG++ +A + G SL + ++ +
Sbjct: 96 DAHFDEDERWTDGSSLGINFLYAATHELGHSLGMGHSSD 134
>pdb|2DDY|A Chain A, Solution Structure Of Matrilysin (Mmp-7) Complexed To
Constraint Conformational Sulfonamide Inhibitor
Length = 173
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 62/99 (62%), Gaps = 5/99 (5%)
Query: 22 LRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGRGG 81
+ +AL++W K L FR+V ADI+I F + H D YPFDGPG LAHAF PG+G GG
Sbjct: 35 VSKALNMWGKEIPLHFRKVVWGTADIMIGFARGAHGDSYPFDGPGNTLAHAFAPGTGLGG 94
Query: 82 DAHFDIDEDWM---VLGVS--RSANADEGKSLELANADE 115
DAHFD DE W LG++ +A + G SL + ++ +
Sbjct: 95 DAHFDEDERWTDGSSLGINFLYAATHELGHSLGMGHSSD 133
>pdb|1MMP|A Chain A, Matrilysin Complexed With Carboxylate Inhibitor
pdb|1MMP|B Chain B, Matrilysin Complexed With Carboxylate Inhibitor
pdb|1MMQ|A Chain A, Matrilysin Complexed With Hydroxamate Inhibitor
pdb|1MMR|A Chain A, Matrilysin Complexed With Sulfodiimine Inhibitor
Length = 170
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 62/99 (62%), Gaps = 5/99 (5%)
Query: 22 LRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGRGG 81
+ +AL++W K L FR+V ADI+I F + H D YPFDGPG LAHAF PG+G GG
Sbjct: 35 VSKALNMWGKEIPLHFRKVVWGTADIMIGFARGAHGDSYPFDGPGNTLAHAFAPGTGLGG 94
Query: 82 DAHFDIDEDWM---VLGVS--RSANADEGKSLELANADE 115
DAHFD DE W LG++ +A + G SL + ++ +
Sbjct: 95 DAHFDEDERWTDGSSLGINFLYAATHELGHSLGMGHSSD 133
>pdb|2Y6C|A Chain A, The Discovery Of Mmp7 Inhibitors Exploiting A Novel
Selectivity Trigger
Length = 165
Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 62/99 (62%), Gaps = 5/99 (5%)
Query: 22 LRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGRGG 81
+ +AL++W K L FR+V ADI+I F + H D YPFDGPG LAHAF PG+G GG
Sbjct: 36 VSKALNMWGKEIPLHFRKVVWGTADIMIGFARGAHGDSYPFDGPGNTLAHAFAPGTGLGG 95
Query: 82 DAHFDIDEDWM---VLGVS--RSANADEGKSLELANADE 115
DAHFD DE W LG++ +A + G SL + ++ +
Sbjct: 96 DAHFDEDERWTDGSSLGINFLYAATHELGHSLGMGHSSD 134
>pdb|1SU3|A Chain A, X-Ray Structure Of Human Prommp-1: New Insights Into
Collagenase Action
pdb|1SU3|B Chain B, X-Ray Structure Of Human Prommp-1: New Insights Into
Collagenase Action
Length = 450
Score = 84.0 bits (206), Expect = 2e-17, Method: Composition-based stats.
Identities = 48/119 (40%), Positives = 68/119 (57%), Gaps = 8/119 (6%)
Query: 5 HHPKRVRHYD----RGRLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGY 60
H R+ +Y R + + +A +WS + LTF +V++ +ADI+I F + +H D
Sbjct: 94 HLTYRIENYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSEGQADIMISFVRGDHRDNS 153
Query: 61 PFDGPGKILAHAFFPGSGRGGDAHFDIDEDWM----VLGVSRSANADEGKSLELANADE 115
PFDGPG LAHAF PG G GGDAHFD DE W + R A + G SL L+++ +
Sbjct: 154 PFDGPGGNLAHAFQPGPGIGGDAHFDEDERWTNNFREYNLHRVAAHELGHSLGLSHSTD 212
>pdb|1MNC|A Chain A, Structure Of Human Neutrophil Collagenase Reveals Large
S1' Specificity Pocket
Length = 163
Score = 83.2 bits (204), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/88 (47%), Positives = 53/88 (60%), Gaps = 4/88 (4%)
Query: 9 RVRHYDRGRLRDELRRAL----DVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDG 64
R+R+Y E+ RA+ ++WS S L F ++ ADI I F + +H DG PFDG
Sbjct: 16 RIRNYTPQLSEAEVERAIKDAFELWSVASPLIFTGISQGEADINIAFYQRDHGDGSPFDG 75
Query: 65 PGKILAHAFFPGSGRGGDAHFDIDEDWM 92
P ILAHAF PG G GGDAHFD +E W
Sbjct: 76 PNGILAHAFQPGQGIGGDAHFDAEETWT 103
>pdb|3AYK|A Chain A, Catalytic Fragment Of Human Fibroblast Collagenase
Complexed With Cgs-27023a, Nmr, Minimized Average
Structure
pdb|4AYK|A Chain A, Catalytic Fragment Of Human Fibroblast Collagenase
Complexed With Cgs-27023a, Nmr, 30 Structures
pdb|1AYK|A Chain A, Inhibitor-Free Catalytic Fragment Of Human Fibroblast
Collagenase, Nmr, 30 Structures
pdb|1HFC|A Chain A, 1.56 Angstrom Structure Of Mature Truncated Human
Fibroblast Collagenase
pdb|2AYK|A Chain A, Inhibitor-Free Catalytic Fragment Of Human Fibroblast
Collagenase, Nmr, Minimized Average Structure
pdb|2TCL|A Chain A, Structure Of The Catalytic Domain Of Human Fibroblast
Collagenase Complexed With An Inhibitor
Length = 169
Score = 82.4 bits (202), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 67/118 (56%), Gaps = 8/118 (6%)
Query: 4 KHHPKRVRHYD----RGRLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDG 59
H R+ +Y R + + +A +WS + LTF +V++ +ADI+I F + +H D
Sbjct: 12 THLTYRIENYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSEGQADIMISFVRGDHRDN 71
Query: 60 YPFDGPGKILAHAFFPGSGRGGDAHFDIDEDWM----VLGVSRSANADEGKSLELANA 113
PFDGPG LAHAF PG G GGDAHFD DE W + R A + G SL L+++
Sbjct: 72 SPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWTNNFREYNLHRVAAHELGHSLGLSHS 129
>pdb|2J0T|A Chain A, Crystal Structure Of The Catalytic Domain Of Mmp-1 In
Complex With The Inhibitory Domain Of Timp-1
pdb|2J0T|B Chain B, Crystal Structure Of The Catalytic Domain Of Mmp-1 In
Complex With The Inhibitory Domain Of Timp-1
pdb|2J0T|C Chain C, Crystal Structure Of The Catalytic Domain Of Mmp-1 In
Complex With The Inhibitory Domain Of Timp-1
Length = 170
Score = 82.4 bits (202), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 67/118 (56%), Gaps = 8/118 (6%)
Query: 4 KHHPKRVRHYD----RGRLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDG 59
H R+ +Y R + + +A +WS + LTF +V++ +ADI+I F + +H D
Sbjct: 13 THLTYRIENYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSEGQADIMISFVRGDHRDN 72
Query: 60 YPFDGPGKILAHAFFPGSGRGGDAHFDIDEDWM----VLGVSRSANADEGKSLELANA 113
PFDGPG LAHAF PG G GGDAHFD DE W + R A + G SL L+++
Sbjct: 73 SPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWTNNFREYNLHRVAAHELGHSLGLSHS 130
>pdb|966C|A Chain A, Crystal Structure Of Fibroblast Collagenase-1 Complexed To
A Diphenyl-Ether Sulphone Based Hydroxamic Acid
Length = 157
Score = 82.0 bits (201), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 67/118 (56%), Gaps = 8/118 (6%)
Query: 4 KHHPKRVRHYD----RGRLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDG 59
H R+ +Y R + + +A +WS + LTF +V++ +ADI+I F + +H D
Sbjct: 5 THLTYRIENYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSEGQADIMISFVRGDHRDN 64
Query: 60 YPFDGPGKILAHAFFPGSGRGGDAHFDIDEDWM----VLGVSRSANADEGKSLELANA 113
PFDGPG LAHAF PG G GGDAHFD DE W + R A + G SL L+++
Sbjct: 65 SPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWTNNFREYNLHRVAAHELGHSLGLSHS 122
>pdb|3SHI|A Chain A, Crystal Structure Of Human Mmp1 Catalytic Domain At 2.2 A
Resolution
pdb|3SHI|G Chain G, Crystal Structure Of Human Mmp1 Catalytic Domain At 2.2 A
Resolution
pdb|3SHI|M Chain M, Crystal Structure Of Human Mmp1 Catalytic Domain At 2.2 A
Resolution
Length = 156
Score = 82.0 bits (201), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 67/118 (56%), Gaps = 8/118 (6%)
Query: 4 KHHPKRVRHYD----RGRLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDG 59
H R+ +Y R + + +A +WS + LTF +V++ +ADI+I F + +H D
Sbjct: 7 THLTYRIENYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSEGQADIMISFVRGDHRDN 66
Query: 60 YPFDGPGKILAHAFFPGSGRGGDAHFDIDEDWM----VLGVSRSANADEGKSLELANA 113
PFDGPG LAHAF PG G GGDAHFD DE W + R A + G SL L+++
Sbjct: 67 SPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWTNNFREYNLHRVAAHELGHSLGLSHS 124
>pdb|1CGE|A Chain A, Crystal Structures Of Recombinant 19-Kda Human Fibroblast
Collagenase Complexed To Itself
Length = 168
Score = 82.0 bits (201), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 44/96 (45%), Positives = 60/96 (62%), Gaps = 4/96 (4%)
Query: 22 LRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGRGG 81
+ +A +WS + LTF +V++ +ADI+I F + +H D PFDGPG LAHAF PG G GG
Sbjct: 33 IEKAFQLWSNVTPLTFTKVSEGQADIMISFVRGDHRDNSPFDGPGGNLAHAFQPGPGIGG 92
Query: 82 DAHFDIDEDWM----VLGVSRSANADEGKSLELANA 113
DAHFD DE W + R A + G SL L+++
Sbjct: 93 DAHFDEDERWTNNFREYNLHRVAAHELGHSLGLSHS 128
>pdb|1SLM|A Chain A, Crystal Structure Of Fibroblast Stromelysin-1: The
C-Truncated Human Proenzyme
Length = 255
Score = 82.0 bits (201), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 46/70 (65%)
Query: 22 LRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGRGG 81
+ +AL VW + + LTF + + ADI+I F H D YPFDGPG +LAHA+ PG G G
Sbjct: 117 VEKALKVWEEVTPLTFSRLYEGEADIMISFAVREHGDFYPFDGPGNVLAHAYAPGPGING 176
Query: 82 DAHFDIDEDW 91
DAHFD DE W
Sbjct: 177 DAHFDDDEQW 186
>pdb|1CGF|A Chain A, Crystal Structures Of Recombinant 19-Kda Human Fibroblast
Collagenase Complexed To Itself
pdb|1CGF|B Chain B, Crystal Structures Of Recombinant 19-Kda Human Fibroblast
Collagenase Complexed To Itself
Length = 162
Score = 81.6 bits (200), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 44/96 (45%), Positives = 60/96 (62%), Gaps = 4/96 (4%)
Query: 22 LRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGRGG 81
+ +A +WS + LTF +V++ +ADI+I F + +H D PFDGPG LAHAF PG G GG
Sbjct: 33 IEKAFQLWSNVTPLTFTKVSEGQADIMISFVRGDHRDNSPFDGPGGNLAHAFQPGPGIGG 92
Query: 82 DAHFDIDEDWM----VLGVSRSANADEGKSLELANA 113
DAHFD DE W + R A + G SL L+++
Sbjct: 93 DAHFDEDERWTNNFREYNLHRVAAHELGHSLGLSHS 128
>pdb|1QIA|A Chain A, Crystal Structure Of Stromelysin Catalytic Domain
pdb|1QIA|B Chain B, Crystal Structure Of Stromelysin Catalytic Domain
pdb|1QIA|C Chain C, Crystal Structure Of Stromelysin Catalytic Domain
pdb|1QIA|D Chain D, Crystal Structure Of Stromelysin Catalytic Domain
Length = 162
Score = 81.3 bits (199), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 46/70 (65%)
Query: 22 LRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGRGG 81
+ +AL VW + + LTF + + ADI+I F H D YPFDGPG +LAHA+ PG G G
Sbjct: 29 VEKALKVWEEVTPLTFSRLYEGEADIMISFAVREHGDFYPFDGPGNVLAHAYAPGPGING 88
Query: 82 DAHFDIDEDW 91
DAHFD DE W
Sbjct: 89 DAHFDDDEQW 98
>pdb|1HFS|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Fibroblast Stromelysin-1 Inhibited With The
N-Carboxy-Alkyl Inhibitor L-764,004
Length = 160
Score = 81.3 bits (199), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 53/92 (57%), Gaps = 4/92 (4%)
Query: 4 KHHPKRVRHYDRGRLRDEL----RRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDG 59
H R+ +Y +D + +AL VW + + LTF + + ADI+I F H D
Sbjct: 8 THLTYRIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYEGEADIMISFAVREHGDF 67
Query: 60 YPFDGPGKILAHAFFPGSGRGGDAHFDIDEDW 91
YPFDGPG +LAHA+ PG G GDAHFD DE W
Sbjct: 68 YPFDGPGNVLAHAYAPGPGINGDAHFDDDEQW 99
>pdb|2JNP|A Chain A, Solution Structure Of Matrix Metalloproteinase 3 (Mmp-3)
In The Presence Of N-Isobutyl-N-[4-
Methoxyphenylsulfonyl]glycyl Hydroxamic Acid (Nngh)
pdb|2JT5|A Chain A, Solution Structure Of Matrix Metalloproteinase 3 (mmp-3)
In The Presence Of
N-hydroxy-2-[n-(2-hydroxyethyl)biphenyl-4- Sulfonamide]
Hydroxamic Acid (mlc88)
pdb|2JT6|A Chain A, Solution Structure Of Matrix Metalloproteinase 3 (Mmp-3)
In The Presence Of 3-4'-Cyanobyphenyl-4-Yloxy)-N-
Hdydroxypropionamide (Mmp-3 Inhibitor Vii)
Length = 161
Score = 81.3 bits (199), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 53/92 (57%), Gaps = 4/92 (4%)
Query: 4 KHHPKRVRHYDRGRLRDEL----RRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDG 59
H R+ +Y +D + +AL VW + + LTF + + ADI+I F H D
Sbjct: 8 THLTYRIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYEGEADIMISFAVREHGDF 67
Query: 60 YPFDGPGKILAHAFFPGSGRGGDAHFDIDEDW 91
YPFDGPG +LAHA+ PG G GDAHFD DE W
Sbjct: 68 YPFDGPGNVLAHAYAPGPGINGDAHFDDDEQW 99
>pdb|1QIC|A Chain A, Crystal Structure Of Stromelysin Catalytic Domain
pdb|1QIC|B Chain B, Crystal Structure Of Stromelysin Catalytic Domain
pdb|1QIC|C Chain C, Crystal Structure Of Stromelysin Catalytic Domain
pdb|1QIC|D Chain D, Crystal Structure Of Stromelysin Catalytic Domain
Length = 161
Score = 81.3 bits (199), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 53/92 (57%), Gaps = 4/92 (4%)
Query: 4 KHHPKRVRHYDRGRLRDEL----RRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDG 59
H R+ +Y +D + +AL VW + + LTF + + ADI+I F H D
Sbjct: 7 THLTYRIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYEGEADIMISFAVREHGDF 66
Query: 60 YPFDGPGKILAHAFFPGSGRGGDAHFDIDEDW 91
YPFDGPG +LAHA+ PG G GDAHFD DE W
Sbjct: 67 YPFDGPGNVLAHAYAPGPGINGDAHFDDDEQW 98
>pdb|1UMS|A Chain A, Stromelysin-1 Catalytic Domain With Hydrophobic Inhibitor
Bound, Ph 7.0, 32oc, 20 Mm Cacl2, 15% Acetonitrile; Nmr
Ensemble Of 20 Structures
pdb|1UMT|A Chain A, Stromelysin-1 Catalytic Domain With Hydrophobic Inhibitor
Bound, Ph 7.0, 32oc, 20 Mm Cacl2, 15% Acetonitrile; Nmr
Average Of 20 Structures Minimized With Restraints
Length = 174
Score = 81.3 bits (199), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 46/70 (65%)
Query: 22 LRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGRGG 81
+ +AL VW + + LTF + + ADI+I F H D YPFDGPG +LAHA+ PG G G
Sbjct: 35 VEKALKVWEEVTPLTFSRLYEGEADIMISFAVREHGDFYPFDGPGNVLAHAYAPGPGING 94
Query: 82 DAHFDIDEDW 91
DAHFD DE W
Sbjct: 95 DAHFDDDEQW 104
>pdb|1BIW|A Chain A, Design And Synthesis Of Conformationally-Constrained Mmp
Inhibitors
pdb|1BIW|B Chain B, Design And Synthesis Of Conformationally-Constrained Mmp
Inhibitors
pdb|1BQO|A Chain A, Discovery Of Potent, Achiral Matrix Metalloproteinase
Inhibitors
pdb|1BQO|B Chain B, Discovery Of Potent, Achiral Matrix Metalloproteinase
Inhibitors
pdb|1B3D|A Chain A, Stromelysin-1
pdb|1B3D|B Chain B, Stromelysin-1
pdb|1CQR|A Chain A, Crystal Structure Of The Stromelysin Catalytic Domain At
2.0 A Resolution
pdb|1CQR|B Chain B, Crystal Structure Of The Stromelysin Catalytic Domain At
2.0 A Resolution
pdb|1C3I|A Chain A, Human Stromelysin-1 Catalytic Domain Complexed With
Ro-26-2812
pdb|1C3I|B Chain B, Human Stromelysin-1 Catalytic Domain Complexed With
Ro-26-2812
pdb|1D8M|A Chain A, Crystal Structure Of Mmp3 Complexed With A Heterocycle-
Based Inhibitor
pdb|1D8M|B Chain B, Crystal Structure Of Mmp3 Complexed With A Heterocycle-
Based Inhibitor
pdb|1D7X|A Chain A, Crystal Structure Of Mmp3 Complexed With A Modified
Proline Scaffold Based Inhibitor.
pdb|1D7X|B Chain B, Crystal Structure Of Mmp3 Complexed With A Modified
Proline Scaffold Based Inhibitor.
pdb|1D8F|A Chain A, Crystal Structure Of Mmp3 Complexed With A Piperazine
Based Inhibitor.
pdb|1D8F|B Chain B, Crystal Structure Of Mmp3 Complexed With A Piperazine
Based Inhibitor.
pdb|1D5J|A Chain A, Crystal Structure Of Mmp3 Complexed With A Thiazepine
Based Inhibitor.
pdb|1D5J|B Chain B, Crystal Structure Of Mmp3 Complexed With A Thiazepine
Based Inhibitor.
pdb|1G49|A Chain A, A Carboxylic Acid Based Inhibitor In Complex With Mmp3
pdb|1G49|B Chain B, A Carboxylic Acid Based Inhibitor In Complex With Mmp3
pdb|1G05|A Chain A, Heterocycle-Based Mmp Inhibitor With P2'substituents
pdb|1G05|B Chain B, Heterocycle-Based Mmp Inhibitor With P2'substituents
pdb|1HY7|A Chain A, A Carboxylic Acid Based Inhibitor In Complex With Mmp3
pdb|1HY7|B Chain B, A Carboxylic Acid Based Inhibitor In Complex With Mmp3
pdb|1BM6|A Chain A, Solution Structure Of The Catalytic Domain Of Human
Stromelysin-1 Complexed To A Potent Non-Peptidic
Inhibitor, Nmr, 20 Structures
pdb|2SRT|A Chain A, Catalytic Domain Of Human Stromelysin-1 At Ph 5.5 And 40oc
Complexed With Inhibitor
pdb|1SLN|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Fibroblast Stromelysin-1 Inhibited With The
N-Carboxy-Alkyl Inhibitor L-702,842
pdb|4DPE|A Chain A, Structure Of Mmp3 Complexed With A Platinum-based
Inhibitor.
pdb|4DPE|B Chain B, Structure Of Mmp3 Complexed With A Platinum-based
Inhibitor.
pdb|4JA1|A Chain A, Structure Of Mmp3 Complexed With A Platinum-based
Inhibitor
pdb|4JA1|B Chain B, Structure Of Mmp3 Complexed With A Platinum-based
Inhibitor
Length = 173
Score = 81.3 bits (199), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 46/70 (65%)
Query: 22 LRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGRGG 81
+ +AL VW + + LTF + + ADI+I F H D YPFDGPG +LAHA+ PG G G
Sbjct: 35 VEKALKVWEEVTPLTFSRLYEGEADIMISFAVREHGDFYPFDGPGNVLAHAYAPGPGING 94
Query: 82 DAHFDIDEDW 91
DAHFD DE W
Sbjct: 95 DAHFDDDEQW 104
>pdb|1USN|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Fibroblast Stromelysin-1 Inhibited With Thiadiazole
Inhibitor Pnu-142372
pdb|2USN|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Fibroblast Stromelysin-1 Inhibited With Thiadiazole
Inhibitor Pnu-141803
Length = 165
Score = 81.3 bits (199), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 53/92 (57%), Gaps = 4/92 (4%)
Query: 4 KHHPKRVRHYDRGRLRDEL----RRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDG 59
H R+ +Y +D + +AL VW + + LTF + + ADI+I F H D
Sbjct: 13 THLTYRIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYEGEADIMISFAVREHGDF 72
Query: 60 YPFDGPGKILAHAFFPGSGRGGDAHFDIDEDW 91
YPFDGPG +LAHA+ PG G GDAHFD DE W
Sbjct: 73 YPFDGPGNVLAHAYAPGPGINGDAHFDDDEQW 104
>pdb|1B8Y|A Chain A, X-Ray Structure Of Human Stromelysin Catalytic Domain
Complexed With Non-Peptide Inhibitors: Implications For
Inhibitor Selectivity
pdb|3OHL|A Chain A, Catalytic Domain Of Stromelysin-1 In Complex With
N-Hydroxy-2-(4-
Methoxy-N-(Pyridine-3-
Ylmethyl)phenylsulfonamido)acetamide
Length = 167
Score = 81.3 bits (199), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 53/92 (57%), Gaps = 4/92 (4%)
Query: 4 KHHPKRVRHYDRGRLRDEL----RRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDG 59
H R+ +Y +D + +AL VW + + LTF + + ADI+I F H D
Sbjct: 13 THLTYRIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYEGEADIMISFAVREHGDF 72
Query: 60 YPFDGPGKILAHAFFPGSGRGGDAHFDIDEDW 91
YPFDGPG +LAHA+ PG G GDAHFD DE W
Sbjct: 73 YPFDGPGNVLAHAYAPGPGINGDAHFDDDEQW 104
>pdb|4GR8|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
In Complex With Selective Phosphinic Inhibitor Rxp470c
Length = 152
Score = 81.3 bits (199), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 47/72 (65%)
Query: 22 LRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGRGG 81
+R+A VWS + L F ++N ADIL+ F + H D + FDG G ILAHAF PGSG GG
Sbjct: 24 IRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDDHAFDGKGGILAHAFGPGSGIGG 83
Query: 82 DAHFDIDEDWMV 93
DAHFD DE W
Sbjct: 84 DAHFDEDEFWTT 95
>pdb|1JAQ|A Chain A, Complex Of 1-Hydroxylamine-2-Isobutylmalonyl-Ala-Gly-Nh2
With The Catalytic Domain Of Matrix Metallo Proteinase-8
(Met80 Form)
pdb|1JAP|A Chain A, Complex Of Pro-Leu-Gly-Hydroxylamine With The Catalytic
Domain Of Matrix Metallo Proteinase-8 (Met80 Form)
pdb|1JAO|A Chain A, Complex Of 3-Mercapto-2-Benzylpropanoyl-Ala-Gly-Nh2 With
The Catalytic Domain Of Matrix Metallo Proteinase-8
(Met80 Form)
pdb|1I73|A Chain A, Complex Of Pro-Leu-L-Trp Phosphonate With The Catalitic
Domain Of Matrix Metallo Proteinase-8 (Met80 Form)
pdb|1I76|A Chain A, Complex Of 2-(Biphenyl-4-Sulfonyl)-1,2,3,4-Tetrahydro-
Isoquinoline-3-Carboxylic Acid (D-Tic Derivative) With T
Catalitic Domain Of Matrix Metallo Proteinase-8 (Met80
Form)
pdb|1JJ9|A Chain A, Crystal Structure Of Mmp8-Barbiturate Complex Reveals
Mechanism For Collagen Substrate Recognition
pdb|1ZP5|A Chain A, Crystal Structure Of The Complex Between Mmp-8 And A N-
Hydroxyurea Inhibitor
pdb|1ZS0|A Chain A, Crystal Structure Of The Complex Between Mmp-8 And A
Phosphonate Inhibitor (s-enantiomer)
pdb|1ZVX|A Chain A, Crystal Structure Of The Complex Between Mmp-8 And A
Phosphonate Inhibitor (r-enantiomer)
pdb|1MMB|A Chain A, Complex Of Bb94 With The Catalytic Domain Of Matrix
Metalloproteinase-8
pdb|3DNG|A Chain A, Crystal Structure Of The Complex Between Mmp-8 And A Non-
Zinc Chelating Inhibitor
pdb|3DNG|B Chain B, Crystal Structure Of The Complex Between Mmp-8 And A Non-
Zinc Chelating Inhibitor
pdb|3DPE|A Chain A, Crystal Structure Of The Complex Between Mmp-8 And A Non-
Zinc Chelating Inhibitor
pdb|3DPF|A Chain A, Crystal Structure Of The Complex Between Mmp-8 And A Non-
Zinc Chelating Inhibitor
pdb|3DPF|B Chain B, Crystal Structure Of The Complex Between Mmp-8 And A Non-
Zinc Chelating Inhibitor
Length = 163
Score = 81.3 bits (199), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 52/87 (59%), Gaps = 4/87 (4%)
Query: 9 RVRHYDRGRLRDELRRAL----DVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDG 64
R+R+Y E+ RA+ ++WS S L F ++ ADI I F + +H D PFDG
Sbjct: 17 RIRNYTPQLSEAEVERAIKDAFELWSVASPLIFTRISQGEADINIAFYQRDHGDNSPFDG 76
Query: 65 PGKILAHAFFPGSGRGGDAHFDIDEDW 91
P ILAHAF PG G GGDAHFD +E W
Sbjct: 77 PNGILAHAFQPGQGIGGDAHFDAEETW 103
>pdb|1C8T|A Chain A, Human Stromelysin-1 (E202q) Catalytic Domain Complexed
With Ro-26-2812
pdb|1C8T|B Chain B, Human Stromelysin-1 (E202q) Catalytic Domain Complexed
With Ro-26-2812
Length = 167
Score = 81.3 bits (199), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 46/70 (65%)
Query: 22 LRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGRGG 81
+ +AL VW + + LTF + + ADI+I F H D YPFDGPG +LAHA+ PG G G
Sbjct: 32 VEKALKVWEEVTPLTFSRLYEGEADIMISFAVREHGDFYPFDGPGNVLAHAYAPGPGING 91
Query: 82 DAHFDIDEDW 91
DAHFD DE W
Sbjct: 92 DAHFDDDEQW 101
>pdb|2K9C|A Chain A, Paramagnetic Shifts In Solid-State Nmr Of Proteins To
Elicit Structural Information
pdb|2KRJ|A Chain A, High-Resolution Solid-State Nmr Structure Of A 17.6 Kda
Prot
Length = 152
Score = 80.9 bits (198), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 47/72 (65%)
Query: 22 LRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGRGG 81
+R+A VWS + L F ++N ADIL+ F + H D + FDG G ILAHAF PGSG GG
Sbjct: 23 IRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDDHAFDGKGGILAHAFGPGSGIGG 82
Query: 82 DAHFDIDEDWMV 93
DAHFD DE W
Sbjct: 83 DAHFDEDEFWTT 94
>pdb|1CAQ|A Chain A, X-Ray Structure Of Human Stromelysin Catalytic Domain
Complexes With Non-Peptide Inhibitors: Implication For
Inhibitor Selectivity
pdb|1CIZ|A Chain A, X-ray Structure Of Human Stromelysin Catalytic Domain
Complexes With Non-peptide Inhibitors: Implication For
Inhibitor Selectivity
pdb|1G4K|A Chain A, X-ray Structure Of A Novel Matrix Metalloproteinase
Inhibitor Complexed To Stromelysin
pdb|1G4K|B Chain B, X-ray Structure Of A Novel Matrix Metalloproteinase
Inhibitor Complexed To Stromelysin
pdb|1G4K|C Chain C, X-ray Structure Of A Novel Matrix Metalloproteinase
Inhibitor Complexed To Stromelysin
pdb|1OO9|A Chain A, Orientation In Solution Of Mmp-3 Catalytic Domain And N-
Timp-1 From Residual Dipolar Couplings
pdb|3USN|A Chain A, Structure Of The Catalytic Domain Of Human Fibroblast
Stromelysin-1 Inhibited With The Thiadiazole Inhibitor
Ipnu-107859, Nmr, 1 Structure
Length = 168
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 46/70 (65%)
Query: 22 LRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGRGG 81
+ +AL VW + + LTF + + ADI+I F H D YPFDGPG +LAHA+ PG G G
Sbjct: 35 VEKALKVWEEVTPLTFSRLYEGEADIMISFAVREHGDFYPFDGPGNVLAHAYAPGPGING 94
Query: 82 DAHFDIDEDW 91
DAHFD DE W
Sbjct: 95 DAHFDDDEQW 104
>pdb|1KBC|A Chain A, Procarboxypeptidase Ternary Complex
pdb|1KBC|B Chain B, Procarboxypeptidase Ternary Complex
pdb|1JAN|A Chain A, Complex Of Pro-Leu-Gly-Hydroxylamine With The Catalytic
Domain Of Matrix Metallo Proteinase-8 (Phe79 Form)
Length = 164
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 52/87 (59%), Gaps = 4/87 (4%)
Query: 9 RVRHYDRGRLRDELRRAL----DVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDG 64
R+R+Y E+ RA+ ++WS S L F ++ ADI I F + +H D PFDG
Sbjct: 18 RIRNYTPQLSEAEVERAIKDAFELWSVASPLIFTRISQGEADINIAFYQRDHGDNSPFDG 77
Query: 65 PGKILAHAFFPGSGRGGDAHFDIDEDW 91
P ILAHAF PG G GGDAHFD +E W
Sbjct: 78 PNGILAHAFQPGQGIGGDAHFDAEETW 104
>pdb|2D1O|A Chain A, Stromelysin-1 (Mmp-3) Complexed To A Hydroxamic Acid
Inhibitor
pdb|2D1O|B Chain B, Stromelysin-1 (Mmp-3) Complexed To A Hydroxamic Acid
Inhibitor
Length = 171
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 46/70 (65%)
Query: 22 LRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGRGG 81
+ +AL VW + + LTF + + ADI+I F H D YPFDGPG +LAHA+ PG G G
Sbjct: 35 VEKALKVWEEVTPLTFSRLYEGEADIMISFAVREHGDFYPFDGPGNVLAHAYAPGPGING 94
Query: 82 DAHFDIDEDW 91
DAHFD DE W
Sbjct: 95 DAHFDDDEQW 104
>pdb|3OHO|A Chain A, Catalytic Domain Of Stromelysin-1 In Complex With
N-Hydroxy-2-(4- Methylphenylsulfonamido)acetamide
Length = 169
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 46/70 (65%)
Query: 22 LRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGRGG 81
+ +AL VW + + LTF + + ADI+I F H D YPFDGPG +LAHA+ PG G G
Sbjct: 35 VEKALKVWEEVTPLTFSRLYEGEADIMISFAVREHGDFYPFDGPGNVLAHAYAPGPGING 94
Query: 82 DAHFDIDEDW 91
DAHFD DE W
Sbjct: 95 DAHFDDDEQW 104
>pdb|1A86|A Chain A, Mmp8 With Malonic And Aspartic Acid Based Inhibitor
pdb|1JH1|A Chain A, Crystal Structure Of Mmp-8 Complexed With A 6h-1,3,4-
Thiadiazine Derived Inhibitor
pdb|2OY2|A Chain A, Human Mmp-8 In Complex With Peptide Iag
pdb|2OY2|F Chain F, Human Mmp-8 In Complex With Peptide Iag
pdb|2OY4|A Chain A, Uninhibited Human Mmp-8
pdb|2OY4|F Chain F, Uninhibited Human Mmp-8
pdb|1A85|A Chain A, Mmp8 With Malonic And Asparagine Based Inhibitor
Length = 158
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 52/88 (59%), Gaps = 4/88 (4%)
Query: 9 RVRHYDRGRLRDELRRAL----DVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDG 64
R+R+Y E+ RA+ ++WS S L F ++ ADI I F + +H D PFDG
Sbjct: 12 RIRNYTPQLSEAEVERAIKDAFELWSVASPLIFTRISQGEADINIAFYQRDHGDNSPFDG 71
Query: 65 PGKILAHAFFPGSGRGGDAHFDIDEDWM 92
P ILAHAF PG G GGDAHFD +E W
Sbjct: 72 PNGILAHAFQPGQGIGGDAHFDAEETWT 99
>pdb|2CLT|A Chain A, Crystal Structure Of The Active Form (Full-Length) Of
Human Fibroblast Collagenase.
pdb|2CLT|B Chain B, Crystal Structure Of The Active Form (Full-Length) Of
Human Fibroblast Collagenase.
pdb|4AUO|A Chain A, Crystal Structure Of Mmp-1(E200a) In Complex With A
Triple- Helical Collagen Peptide
pdb|4AUO|B Chain B, Crystal Structure Of Mmp-1(E200a) In Complex With A
Triple- Helical Collagen Peptide
Length = 367
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 56/91 (61%), Gaps = 4/91 (4%)
Query: 5 HHPKRVRHYD----RGRLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGY 60
H R+ +Y R + + +A +WS + LTF +V++ +ADI+I F + +H D
Sbjct: 14 HLTYRIENYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSEGQADIMISFVRGDHRDNS 73
Query: 61 PFDGPGKILAHAFFPGSGRGGDAHFDIDEDW 91
PFDGPG LAHAF PG G GGDAHFD DE W
Sbjct: 74 PFDGPGGNLAHAFQPGPGIGGDAHFDEDERW 104
>pdb|3TT4|A Chain A, Human Mmp8 In Complex With L-Glutamate Motif Inhibitor
Length = 159
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 52/88 (59%), Gaps = 4/88 (4%)
Query: 9 RVRHYDRGRLRDELRRAL----DVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDG 64
R+R+Y E+ RA+ ++WS S L F ++ ADI I F + +H D PFDG
Sbjct: 13 RIRNYTPQLSEAEVERAIKDAFELWSVASPLIFTRISQGEADINIAFYQRDHGDNSPFDG 72
Query: 65 PGKILAHAFFPGSGRGGDAHFDIDEDWM 92
P ILAHAF PG G GGDAHFD +E W
Sbjct: 73 PNGILAHAFQPGQGIGGDAHFDAEETWT 100
>pdb|1BZS|A Chain A, Crystal Structure Of Mmp8 Complexed With Hmr2909
Length = 165
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 52/87 (59%), Gaps = 4/87 (4%)
Query: 9 RVRHYDRGRLRDELRRAL----DVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDG 64
R+R+Y E+ RA+ ++WS S L F ++ ADI I F + +H D PFDG
Sbjct: 18 RIRNYTPQLSEAEVERAIKDAFELWSVASPLIFTRISQGEADINIAFYQRDHGDNSPFDG 77
Query: 65 PGKILAHAFFPGSGRGGDAHFDIDEDW 91
P ILAHAF PG G GGDAHFD +E W
Sbjct: 78 PNGILAHAFQPGQGIGGDAHFDAEETW 104
>pdb|1CGL|A Chain A, Structure Of The Catalytic Domain Of Fibroblast
Collagenase Complexed With An Inhibitor
pdb|1CGL|B Chain B, Structure Of The Catalytic Domain Of Fibroblast
Collagenase Complexed With An Inhibitor
Length = 169
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/96 (45%), Positives = 60/96 (62%), Gaps = 4/96 (4%)
Query: 22 LRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGRGG 81
+ +A +WS + LTF +V++ +ADI+I F + +H D PFDGPG LAHAF PG G GG
Sbjct: 34 IEKAFQLWSDVTPLTFTKVSEGQADIMISFVRGDHRDNSPFDGPGGNLAHAFDPGPGIGG 93
Query: 82 DAHFDIDEDWM----VLGVSRSANADEGKSLELANA 113
DAHFD DE W + R A + G SL L+++
Sbjct: 94 DAHFDEDERWTNNFREYNLHRVAAHELGHSLGLSHS 129
>pdb|1CXV|A Chain A, Structure Of Recombinant Mouse Collagenase-3 (Mmp-13)
pdb|1CXV|B Chain B, Structure Of Recombinant Mouse Collagenase-3 (Mmp-13)
Length = 164
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 45/75 (60%)
Query: 17 RLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPG 76
+ R+A VWS + L F + D ADI+I F + H D YPFDGP +LAHAF PG
Sbjct: 30 EVEKAFRKAFKVWSDVTPLNFTRIYDGTADIMISFGTKEHGDFYPFDGPSGLLAHAFPPG 89
Query: 77 SGRGGDAHFDIDEDW 91
GGDAHFD DE W
Sbjct: 90 PNYGGDAHFDDDETW 104
>pdb|1OS2|A Chain A, Ternary Enzyme-Product-Inhibitor Complexes Of Human Mmp12
pdb|1OS2|B Chain B, Ternary Enzyme-Product-Inhibitor Complexes Of Human Mmp12
pdb|1OS2|C Chain C, Ternary Enzyme-Product-Inhibitor Complexes Of Human Mmp12
pdb|1OS2|D Chain D, Ternary Enzyme-Product-Inhibitor Complexes Of Human Mmp12
pdb|1OS2|E Chain E, Ternary Enzyme-Product-Inhibitor Complexes Of Human Mmp12
pdb|1OS2|F Chain F, Ternary Enzyme-Product-Inhibitor Complexes Of Human Mmp12
pdb|1OS9|A Chain A, Binary Enzyme-Product Complexes Of Human Mmp12
pdb|1OS9|B Chain B, Binary Enzyme-Product Complexes Of Human Mmp12
pdb|1OS9|C Chain C, Binary Enzyme-Product Complexes Of Human Mmp12
pdb|1OS9|D Chain D, Binary Enzyme-Product Complexes Of Human Mmp12
pdb|1OS9|E Chain E, Binary Enzyme-Product Complexes Of Human Mmp12
pdb|1OS9|F Chain F, Binary Enzyme-Product Complexes Of Human Mmp12
Length = 165
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 47/72 (65%)
Query: 22 LRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGRGG 81
+R+A VWS + L F ++N ADIL+ F + H D + FDG G ILAHAF PGSG GG
Sbjct: 31 IRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDDHAFDGKGGILAHAFGPGSGIGG 90
Query: 82 DAHFDIDEDWMV 93
DAHFD DE W
Sbjct: 91 DAHFDEDEFWTT 102
>pdb|1RMZ|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor Nngh At 1.3 A Resolution
pdb|2HU6|A Chain A, Crystal Structure Of Human Mmp-12 In Complex With
Acetohydroxamic Acid And A Bicyclic Inhibitor
pdb|2OXU|A Chain A, Uninhibited Form Of Human Mmp-12
pdb|2OXW|A Chain A, Human Mmp-12 Complexed With The Peptide Iag
pdb|2OXZ|A Chain A, Human Mmp-12 In Complex With Two Peptides Pqg And Iag
pdb|1YCM|A Chain A, Solution Structure Of Matrix Metalloproteinase 12 (Mmp12)
In The Presence Of N-Isobutyl-N-[4-
Methoxyphenylsulfonyl]glycyl Hydroxamic Acid (Nngh)
pdb|1Z3J|A Chain A, Solution Structure Of Mmp12 In The Presence Of
N-Isobutyl-N- 4-Methoxyphenylsulfonyl]glycyl Hydroxamic
Acid (Nngh)
pdb|1Y93|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With Acetohydroxamic Acid At Atomic Resolution
pdb|3LIK|A Chain A, Human Mmp12 In Complex With Non-Zinc Chelating Inhibitor
pdb|3LIL|A Chain A, Human Mmp12 In Complex With Non-Zinc Chelating Inhibitor
pdb|3LIR|A Chain A, Human Mmp12 In Complex With Non-Zinc Chelating Inhibitor
pdb|3LJG|A Chain A, Human Mmp12 In Complex With Non-Zinc Chelating Inhibitor
pdb|3TS4|A Chain A, Human Mmp12 In Complex With L-Glutamate Motif Inhibitor
pdb|3TSK|A Chain A, Human Mmp12 In Complex With L-Glutamate Motif Inhibitor
pdb|4EFS|A Chain A, Human Mmp12 In Complex With L-Glutamate Motif Inhibitor
pdb|4GQL|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
In Complex With Selective Phosphinic Inhibitor Rxp470.1
pdb|4GR0|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
In Complex With Selective Phosphinic Inhibitor Rxp470b
pdb|4GR3|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
In Complex With Selective Phosphinic Inhibitor Rxp470a
Length = 159
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 47/72 (65%)
Query: 22 LRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGRGG 81
+R+A VWS + L F ++N ADIL+ F + H D + FDG G ILAHAF PGSG GG
Sbjct: 30 IRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDDHAFDGKGGILAHAFGPGSGIGG 89
Query: 82 DAHFDIDEDWMV 93
DAHFD DE W
Sbjct: 90 DAHFDEDEFWTT 101
>pdb|3F15|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor
(S)-N-(2,3-Dihydroxypropyl)-4-
Methoxy-N-(2-Nitroso-2-Oxoethyl)benzenesulfonamide
pdb|3F16|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor
(R)-N-(3-Hydroxy-1-Nitroso-1-
Oxopropan-2-Yl)-4-Methoxybenzenesulfonamide
pdb|3F17|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor N-(2-Nitroso-2-Oxoethyl)
Biphenyl-4-Sulfonamide
pdb|3F18|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor
4-Fluoro-N-(2-Hydroxyethyl)-N-
(2-Nitroso-2-Oxoethyl)benzenesulfonamide
pdb|3F19|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor 4-Fluoro-N-(2-Nitroso-2-
Oxoethyl)benzenesulfonamide
pdb|3F1A|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor N-(2-Nitroso-2-Oxoethyl)
Benzenesulfonamide
pdb|3EHX|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor (R)-2-(Biphenyl-4-
Ylsulfonamido)-4-Methylpentanoic Acid
pdb|3EHY|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor (R)-2-(4-
Methoxyphenylsulfonamido)propanoic Acid
pdb|3LKA|A Chain A, Catalytic Domain Of Human Mmp-12 Complexed With Hydroxamic
Acid And Paramethoxy-Sulfonyl Amide
pdb|3NX7|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor
N-Hydroxy-2-(N-(2-Hydroxyethyl)4-
Methoxyphenylsulfonamido)acetamide
pdb|3LK8|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor
Paramethoxy-Sulfonyl-Glycine Hydroxamate
pdb|3N2U|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor
N-Hydroxy-2-(4-Methoxy-N(2-(3,4,5-Trihydroxy-6-
(Hydroxymethyl)tetrahydro-2h-Pyran-2-
Yloxy)ethyl)phenylsulfonamido) Acetamide
pdb|3N2V|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor
N-Hydroxy-2-(N-Hydroxyethyl)biphenyl-4-
Ylsulfonamido)acetamide
pdb|3RTS|A Chain A, Human Mmp-12 Catalytic Domain In Complex
WithN-Hydroxy-2-(2- Phenylethylsulfonamido)acetamide
pdb|3RTT|A Chain A, Human Mmp-12 Catalytic Domain In Complex
With(R)-N-Hydroxy-1-
(Phenethylsulfonyl)pyrrolidine-2-Carboxamide
pdb|4GUY|A Chain A, Human Mmp12 Catalytic Domain In Complex
WithN-Hydroxy-2-(2-(4-
Methoxyphenyl)ethylsulfonamido)acetamide
Length = 158
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 47/72 (65%)
Query: 22 LRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGRGG 81
+R+A VWS + L F ++N ADIL+ F + H D + FDG G ILAHAF PGSG GG
Sbjct: 29 IRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDDHAFDGKGGILAHAFGPGSGIGG 88
Query: 82 DAHFDIDEDWMV 93
DAHFD DE W
Sbjct: 89 DAHFDEDEFWTT 100
>pdb|1JK3|A Chain A, Crystal Structure Of Human Mmp-12 (Macrophage Elastase) At
True Atomic Resolution
Length = 158
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 47/72 (65%)
Query: 22 LRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGRGG 81
+R+A VWS + L F ++N ADIL+ F + H D + FDG G ILAHAF PGSG GG
Sbjct: 29 IRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDFHAFDGKGGILAHAFGPGSGIGG 88
Query: 82 DAHFDIDEDWMV 93
DAHFD DE W
Sbjct: 89 DAHFDEDEFWTT 100
>pdb|1L6J|A Chain A, Crystal Structure Of Human Matrix Metalloproteinase Mmp9
(gelatinase B)
Length = 425
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/109 (44%), Positives = 58/109 (53%), Gaps = 5/109 (4%)
Query: 15 RGRLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFF 74
R + D RA +WS + LTF V ADI+I F H DGYPFDG +LAHAF
Sbjct: 115 RAVIDDAFARAFALWSAVTPLTFTRVYSRDADIVIQFGVAEHGDGYPFDGKDGLLAHAFP 174
Query: 75 PGSGRGGDAHFDIDEDWM----VLGVSRSANADEGKSLELANADEGRRH 119
PG G GDAHFD DE W V+ +R NAD G + EGR +
Sbjct: 175 PGPGIQGDAHFDDDELWSLGKGVVVPTRFGNAD-GAACHFPFIFEGRSY 222
>pdb|2POJ|A Chain A, Nmr Solution Structure Of The Inhibitor-Free State Of
Macrophage Metalloelastase (Mmp-12)
Length = 164
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 47/72 (65%)
Query: 22 LRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGRGG 81
+R+A VWS + L F ++N ADIL+ F + H D + FDG G ILAHAF PGSG GG
Sbjct: 35 IRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDFHAFDGKGGILAHAFGPGSGIGG 94
Query: 82 DAHFDIDEDWMV 93
DAHFD DE W
Sbjct: 95 DAHFDEDEFWTT 106
>pdb|2K2G|A Chain A, Solution Structure Of The Wild-Type Catalytic Domain Of
Human Matrix Metalloproteinase 12 (Mmp-12) In Complex
With A Tight-Binding Inhibitor
Length = 165
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/70 (55%), Positives = 47/70 (67%)
Query: 22 LRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGRGG 81
+R+A VWS + L F ++N ADIL+ F + H D + FDG G ILAHAF PGSG GG
Sbjct: 36 IRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDFHAFDGKGGILAHAFGPGSGIGG 95
Query: 82 DAHFDIDEDW 91
DAHFD DE W
Sbjct: 96 DAHFDEDEFW 105
>pdb|2WO8|A Chain A, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WO8|B Chain B, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WO8|C Chain C, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WO8|D Chain D, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WO9|A Chain A, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WO9|B Chain B, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WO9|C Chain C, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WO9|D Chain D, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WOA|A Chain A, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WOA|B Chain B, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WOA|C Chain C, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WOA|D Chain D, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
Length = 164
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 47/72 (65%)
Query: 22 LRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGRGG 81
+R+A VWS + L F ++N ADIL+ F + H D + FDG G ILAHAF PGSG GG
Sbjct: 30 IRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDFHAFDGKGGILAHAFGPGSGIGG 89
Query: 82 DAHFDIDEDWMV 93
DAHFD DE W
Sbjct: 90 DAHFDEDEFWTT 101
>pdb|2W0D|A Chain A, Does A Fast Nuclear Magnetic Resonance Spectroscopy- And
X-Ray Crystallography Hybrid Approach Provide Reliable
Structural Information Of Ligand-Protein Complexes? A
Case Study Of Metalloproteinases.
pdb|2W0D|B Chain B, Does A Fast Nuclear Magnetic Resonance Spectroscopy- And
X-Ray Crystallography Hybrid Approach Provide Reliable
Structural Information Of Ligand-Protein Complexes? A
Case Study Of Metalloproteinases.
pdb|2W0D|C Chain C, Does A Fast Nuclear Magnetic Resonance Spectroscopy- And
X-Ray Crystallography Hybrid Approach Provide Reliable
Structural Information Of Ligand-Protein Complexes? A
Case Study Of Metalloproteinases.
pdb|2W0D|D Chain D, Does A Fast Nuclear Magnetic Resonance Spectroscopy- And
X-Ray Crystallography Hybrid Approach Provide Reliable
Structural Information Of Ligand-Protein Complexes? A
Case Study Of Metalloproteinases.
pdb|3UVC|A Chain A, Mmp12 In A Complex With The Dimeric Adduct:
5-(5-Phenylhydantoin)-5- Phenylhydantoin
pdb|3UVC|B Chain B, Mmp12 In A Complex With The Dimeric Adduct:
5-(5-Phenylhydantoin)-5- Phenylhydantoin
Length = 164
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 47/72 (65%)
Query: 22 LRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGRGG 81
+R+A VWS + L F ++N ADIL+ F + H D + FDG G ILAHAF PGSG GG
Sbjct: 30 IRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDFHAFDGKGGILAHAFGPGSGIGG 89
Query: 82 DAHFDIDEDWMV 93
DAHFD DE W
Sbjct: 90 DAHFDEDEFWTT 101
>pdb|1UTT|A Chain A, Crystal Structure Of Mmp-12 Complexed To 2-
(1,3-Dioxo-1,3-Dihydro-2h-Isoindol-2-Yl)ethyl-4-
(4-Ethoxy[1,1-Biphenyl]-4-Yl)-4-Oxobutanoic Acid
pdb|1UTZ|A Chain A, Crystal Structure Of Mmp-12 Complexed To
(2r)-3-({[4-[(Pyri
Din-4-Yl)phenyl]-Thien-2-
Yl}carboxamido)(Phenyl)propanoic Acid
pdb|1UTZ|B Chain B, Crystal Structure Of Mmp-12 Complexed To
(2r)-3-({[4-[(Pyri
Din-4-Yl)phenyl]-Thien-2-
Yl}carboxamido)(Phenyl)propanoic Acid
Length = 159
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 47/72 (65%)
Query: 22 LRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGRGG 81
+R+A VWS + L F ++N ADIL+ F + H D + FDG G ILAHAF PGSG GG
Sbjct: 29 IRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDFHAFDGKGGILAHAFGPGSGIGG 88
Query: 82 DAHFDIDEDWMV 93
DAHFD DE W
Sbjct: 89 DAHFDEDEFWTT 100
>pdb|2Z2D|A Chain A, Solution Structure Of Human Macrophage Elastase (Mmp-12)
Catalytic Domain Complexed With A Gamma-Keto Butanoic
Acid Inhibitor
Length = 164
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 47/72 (65%)
Query: 22 LRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGRGG 81
+R+A VWS + L F ++N ADIL+ F + H D + FDG G ILAHAF PGSG GG
Sbjct: 35 IRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDFHAFDGKGGILAHAFGPGSGIGG 94
Query: 82 DAHFDIDEDWMV 93
DAHFD DE W
Sbjct: 95 DAHFDEDEFWTT 106
>pdb|1ROS|A Chain A, Crystal Structure Of Mmp-12 Complexed To 2-(1,3-Dioxo-1,3-
Dihydro-2h-Isoindol-2-Yl)ethyl-4-(4-Ethoxy[1,
1-Biphenyl]-4- Yl)-4-Oxobutanoic Acid
pdb|1ROS|B Chain B, Crystal Structure Of Mmp-12 Complexed To 2-(1,3-Dioxo-1,3-
Dihydro-2h-Isoindol-2-Yl)ethyl-4-(4-Ethoxy[1,
1-Biphenyl]-4- Yl)-4-Oxobutanoic Acid
Length = 163
Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 47/72 (65%)
Query: 22 LRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGRGG 81
+R+A VWS + L F ++N ADIL+ F + H D + FDG G ILAHAF PGSG GG
Sbjct: 29 IRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDFHAFDGKGGILAHAFGPGSGIGG 88
Query: 82 DAHFDIDEDWMV 93
DAHFD DE W
Sbjct: 89 DAHFDEDEFWTT 100
>pdb|1HOV|A Chain A, Solution Structure Of A Catalytic Domain Of Mmp-2
Complexed With Sc-74020
Length = 163
Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/102 (45%), Positives = 55/102 (53%), Gaps = 8/102 (7%)
Query: 14 DRGRLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAF 73
D + D RA VWS + L F ++D ADI+I F + H DGYPFDG +LAHAF
Sbjct: 28 DPETVDDAFARAFQVWSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAF 87
Query: 74 FPGSGRGGDAHFDIDEDWMVLGVSRSANADEGKSLELANADE 115
PG+G GGD+HFD DE W N SL L A E
Sbjct: 88 APGTGVGGDSHFDDDELW--------TNTSANYSLFLVAAHE 121
>pdb|1JIZ|A Chain A, Crystal Structure Analysis Of Human Macrophage Elastase
Mmp- 12
pdb|1JIZ|B Chain B, Crystal Structure Analysis Of Human Macrophage Elastase
Mmp- 12
Length = 166
Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 47/72 (65%)
Query: 22 LRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGRGG 81
+R+A VWS + L F ++N ADIL+ F + H D + FDG G ILAHAF PGSG GG
Sbjct: 36 IRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDFHAFDGKGGILAHAFGPGSGIGG 95
Query: 82 DAHFDIDEDWMV 93
DAHFD DE W
Sbjct: 96 DAHFDEDEFWTT 107
>pdb|3AYU|A Chain A, Crystal Structure Of Mmp-2 Active Site Mutant In Complex
With App- Drived Decapeptide Inhibitor
Length = 167
Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 50/80 (62%)
Query: 14 DRGRLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAF 73
D + D RA VWS + L F ++D ADI+I F + H DGYPFDG +LAHAF
Sbjct: 27 DPETVDDAFARAFQVWSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAF 86
Query: 74 FPGSGRGGDAHFDIDEDWMV 93
PG+G GGD+HFD DE W +
Sbjct: 87 APGTGVGGDSHFDDDELWTL 106
>pdb|1QIB|A Chain A, Crystal Structure Of Gelatinase A Catalytic Domain
Length = 161
Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/102 (46%), Positives = 56/102 (54%), Gaps = 7/102 (6%)
Query: 14 DRGRLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAF 73
D + D RA VWS + L F ++D ADI+I F + H DGYPFDG +LAHAF
Sbjct: 22 DPETVDDAFARAFQVWSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAF 81
Query: 74 FPGSGRGGDAHFDIDEDWMVLGVSRSANADEGKSLELANADE 115
PG+G GGD+HFD DE W S G SL L A E
Sbjct: 82 APGTGVGGDSHFDDDELW-------SLGKGVGYSLFLVAAHE 116
>pdb|2JSD|A Chain A, Solution Structure Of Mmp20 Complexed With Nngh
Length = 160
Score = 79.7 bits (195), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 43/72 (59%)
Query: 22 LRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGRGG 81
+ AL WS L+F +N ADI+I FE +H D YPFDGP LAHAF PG G GG
Sbjct: 30 VEMALQAWSSAVPLSFVRINSGEADIMISFENGDHGDSYPFDGPRGTLAHAFAPGEGLGG 89
Query: 82 DAHFDIDEDWMV 93
D HFD E W +
Sbjct: 90 DTHFDNAEKWTM 101
>pdb|1UEA|A Chain A, Mmp-3TIMP-1 Complex
pdb|1UEA|C Chain C, Mmp-3TIMP-1 Complex
Length = 173
Score = 79.7 bits (195), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 45/71 (63%)
Query: 22 LRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGRGG 81
+ +AL VW + + LTF + + ADI I F H D YPFDGPG +LAHA+ PG G G
Sbjct: 35 VEKALKVWEEVTPLTFSRLYEGEADIXISFAVREHGDFYPFDGPGNVLAHAYAPGPGING 94
Query: 82 DAHFDIDEDWM 92
DAHFD DE W
Sbjct: 95 DAHFDDDEQWT 105
>pdb|3BA0|A Chain A, Crystal Structure Of Full-Length Human Mmp-12
Length = 365
Score = 79.3 bits (194), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 47/72 (65%)
Query: 22 LRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGRGG 81
+R+A VWS + L F ++N ADIL+ F + H D + FDG G ILAHAF PGSG GG
Sbjct: 29 IRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDDHAFDGKGGILAHAFGPGSGIGG 88
Query: 82 DAHFDIDEDWMV 93
DAHFD DE W
Sbjct: 89 DAHFDEDEFWTT 100
>pdb|2D1N|A Chain A, Collagenase-3 (Mmp-13) Complexed To A Hydroxamic Acid
Inhibitor
pdb|2D1N|B Chain B, Collagenase-3 (Mmp-13) Complexed To A Hydroxamic Acid
Inhibitor
Length = 166
Score = 79.0 bits (193), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 55/99 (55%), Gaps = 8/99 (8%)
Query: 17 RLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPG 76
+ ++A VWS + L F ++D ADI+I F + H D YPFDGP +LAHAF PG
Sbjct: 30 EVEKAFKKAFKVWSDVTPLNFTRLHDGIADIMISFGIKEHGDFYPFDGPSGLLAHAFPPG 89
Query: 77 SGRGGDAHFDIDEDWMVLGVSRSANADEGKSLELANADE 115
GGDAHFD DE W ++ +G +L L A E
Sbjct: 90 PNYGGDAHFDDDETW--------TSSSKGYNLFLVAAHE 120
>pdb|1FLS|A Chain A, Solution Structure Of The Catalytic Fragment Of Human
Collagenase-3 (Mmp-13) Complexed With A Hydroxamic Acid
Inhibitor
pdb|1FM1|A Chain A, Solution Structure Of The Catalytic Fragment Of Human
Collagenase-3 (Mmp-13) Complexed With A Hydroxamic Acid
Inhibitor
pdb|1ZTQ|A Chain A, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-033
pdb|1ZTQ|B Chain B, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-033
pdb|1ZTQ|C Chain C, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-033
pdb|1ZTQ|D Chain D, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-033
pdb|2E2D|A Chain A, Flexibility And Variability Of Timp Binding: X-Ray
Structure Of The Complex Between Collagenase-3MMP-13 And
Timp-2
pdb|2PJT|A Chain A, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-344
pdb|2PJT|B Chain B, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-344
pdb|2PJT|C Chain C, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-344
pdb|2PJT|D Chain D, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-344
Length = 165
Score = 79.0 bits (193), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 55/99 (55%), Gaps = 8/99 (8%)
Query: 17 RLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPG 76
+ ++A VWS + L F ++D ADI+I F + H D YPFDGP +LAHAF PG
Sbjct: 30 EVEKAFKKAFKVWSDVTPLNFTRLHDGIADIMISFGIKEHGDFYPFDGPSGLLAHAFPPG 89
Query: 77 SGRGGDAHFDIDEDWMVLGVSRSANADEGKSLELANADE 115
GGDAHFD DE W ++ +G +L L A E
Sbjct: 90 PNYGGDAHFDDDETW--------TSSSKGYNLFLVAAHE 120
>pdb|3KRY|A Chain A, Crystal Structure Of Mmp-13 In Complex With Sc-78080
pdb|3KRY|B Chain B, Crystal Structure Of Mmp-13 In Complex With Sc-78080
pdb|3KRY|C Chain C, Crystal Structure Of Mmp-13 In Complex With Sc-78080
pdb|3KRY|D Chain D, Crystal Structure Of Mmp-13 In Complex With Sc-78080
Length = 164
Score = 78.6 bits (192), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 55/99 (55%), Gaps = 8/99 (8%)
Query: 17 RLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPG 76
+ ++A VWS + L F ++D ADI+I F + H D YPFDGP +LAHAF PG
Sbjct: 30 EVEKAFKKAFKVWSDVTPLNFTRLHDGIADIMISFGIKEHGDFYPFDGPSGLLAHAFPPG 89
Query: 77 SGRGGDAHFDIDEDWMVLGVSRSANADEGKSLELANADE 115
GGDAHFD DE W ++ +G +L L A E
Sbjct: 90 PNYGGDAHFDDDETW--------TSSSKGYNLFLVAAHE 120
>pdb|3LJZ|A Chain A, Crystal Structure Of Human Mmp-13 Complexed With An
Amino-2-Indanol Compound
pdb|3LJZ|B Chain B, Crystal Structure Of Human Mmp-13 Complexed With An
Amino-2-Indanol Compound
pdb|3LJZ|C Chain C, Crystal Structure Of Human Mmp-13 Complexed With An
Amino-2-Indanol Compound
pdb|3LJZ|D Chain D, Crystal Structure Of Human Mmp-13 Complexed With An
Amino-2-Indanol Compound
pdb|3O2X|A Chain A, Mmp-13 In Complex With Selective Tetrazole Core Inhibitor
pdb|3O2X|B Chain B, Mmp-13 In Complex With Selective Tetrazole Core Inhibitor
pdb|3O2X|C Chain C, Mmp-13 In Complex With Selective Tetrazole Core Inhibitor
pdb|3O2X|D Chain D, Mmp-13 In Complex With Selective Tetrazole Core Inhibitor
Length = 164
Score = 78.6 bits (192), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 55/99 (55%), Gaps = 8/99 (8%)
Query: 17 RLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPG 76
+ ++A VWS + L F ++D ADI+I F + H D YPFDGP +LAHAF PG
Sbjct: 30 EVEKAFKKAFKVWSDVTPLNFTRLHDGIADIMISFGIKEHGDFYPFDGPSGLLAHAFPPG 89
Query: 77 SGRGGDAHFDIDEDWMVLGVSRSANADEGKSLELANADE 115
GGDAHFD DE W ++ +G +L L A E
Sbjct: 90 PNYGGDAHFDDDETW--------TSSSKGYNLFLVAAHE 120
>pdb|2OW9|A Chain A, Crystal Structure Analysis Of The Mmp13 Catalytic Domain
In Complex With Specific Inhibitor
pdb|2OW9|B Chain B, Crystal Structure Analysis Of The Mmp13 Catalytic Domain
In Complex With Specific Inhibitor
pdb|2OZR|A Chain A, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
pdb|2OZR|B Chain B, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
pdb|2OZR|C Chain C, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
pdb|2OZR|D Chain D, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
pdb|2OZR|E Chain E, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
pdb|2OZR|F Chain F, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
pdb|2OZR|G Chain G, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
pdb|2OZR|H Chain H, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
Length = 170
Score = 78.6 bits (192), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 55/99 (55%), Gaps = 8/99 (8%)
Query: 17 RLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPG 76
+ ++A VWS + L F ++D ADI+I F + H D YPFDGP +LAHAF PG
Sbjct: 33 EVEKAFKKAFKVWSDVTPLNFTRLHDGIADIMISFGIKEHGDFYPFDGPSGLLAHAFPPG 92
Query: 77 SGRGGDAHFDIDEDWMVLGVSRSANADEGKSLELANADE 115
GGDAHFD DE W ++ +G +L L A E
Sbjct: 93 PNYGGDAHFDDDETW--------TSSSKGYNLFLVAAHE 123
>pdb|3KEC|A Chain A, Crystal Structure Of Human Mmp-13 Complexed With A
Phenyl-2h-Tetrazole Compound
pdb|3KEC|B Chain B, Crystal Structure Of Human Mmp-13 Complexed With A
Phenyl-2h-Tetrazole Compound
pdb|3KEJ|A Chain A, Crystal Structure Of Human Mmp-13 Complexed With A
(Pyridin-4-Yl)-2h- Tetrazole Compound
pdb|3KEJ|B Chain B, Crystal Structure Of Human Mmp-13 Complexed With A
(Pyridin-4-Yl)-2h- Tetrazole Compound
pdb|3KEK|A Chain A, Crystal Structure Of Human Mmp-13 Complexed With A
(Pyridin-4-Yl)-2h- Tetrazole Compound
pdb|3KEK|B Chain B, Crystal Structure Of Human Mmp-13 Complexed With A
(Pyridin-4-Yl)-2h- Tetrazole Compound
Length = 167
Score = 78.6 bits (192), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 55/99 (55%), Gaps = 8/99 (8%)
Query: 17 RLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPG 76
+ ++A VWS + L F ++D ADI+I F + H D YPFDGP +LAHAF PG
Sbjct: 30 EVEKAFKKAFKVWSDVTPLNFTRLHDGIADIMISFGIKEHGDFYPFDGPSGLLAHAFPPG 89
Query: 77 SGRGGDAHFDIDEDWMVLGVSRSANADEGKSLELANADE 115
GGDAHFD DE W ++ +G +L L A E
Sbjct: 90 PNYGGDAHFDDDETW--------TSSSKGYNLFLVAAHE 120
>pdb|456C|A Chain A, Crystal Structure Of Collagenase-3 (Mmp-13) Complexed To A
Diphenyl-Ether Sulphone Based Hydroxamic Acid
pdb|456C|B Chain B, Crystal Structure Of Collagenase-3 (Mmp-13) Complexed To A
Diphenyl-Ether Sulphone Based Hydroxamic Acid
pdb|830C|A Chain A, Collagenase-3 (Mmp-13) Complexed To A Sulphone-Based
Hydroxamic Acid
pdb|830C|B Chain B, Collagenase-3 (Mmp-13) Complexed To A Sulphone-Based
Hydroxamic Acid
pdb|1YOU|A Chain A, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With A Potent Pyrimidinetrione Inhibitor
pdb|1YOU|B Chain B, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With A Potent Pyrimidinetrione Inhibitor
Length = 168
Score = 78.6 bits (192), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 55/99 (55%), Gaps = 8/99 (8%)
Query: 17 RLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPG 76
+ ++A VWS + L F ++D ADI+I F + H D YPFDGP +LAHAF PG
Sbjct: 30 EVEKAFKKAFKVWSDVTPLNFTRLHDGIADIMISFGIKEHGDFYPFDGPSGLLAHAFPPG 89
Query: 77 SGRGGDAHFDIDEDWMVLGVSRSANADEGKSLELANADE 115
GGDAHFD DE W ++ +G +L L A E
Sbjct: 90 PNYGGDAHFDDDETW--------TSSSKGYNLFLVAAHE 120
>pdb|1EUB|A Chain A, Solution Structure Of The Catalytic Domain Of Human
Collagenase-3 (Mmp-13) Complexed To A Potent
Non-Peptidic Sulfonamide Inhibitor
pdb|1XUC|A Chain A, Matrix Metalloproteinase-13 Complexed With Non-Zinc
Binding Inhibitor
pdb|1XUC|B Chain B, Matrix Metalloproteinase-13 Complexed With Non-Zinc
Binding Inhibitor
pdb|1XUD|A Chain A, Matrix Metalloproteinase-13 Complexed With Non-Zinc
Binding Inhibitor
pdb|1XUD|B Chain B, Matrix Metalloproteinase-13 Complexed With Non-Zinc
Binding Inhibitor
pdb|1XUR|A Chain A, Matrix Metalloproteinase-13 Complexed With Non-Zinc
Binding Inhibitor
pdb|1XUR|B Chain B, Matrix Metalloproteinase-13 Complexed With Non-Zinc
Binding Inhibitor
pdb|3ELM|A Chain A, Crystal Structure Of Mmp-13 Complexed With Inhibitor 24f
pdb|3ELM|B Chain B, Crystal Structure Of Mmp-13 Complexed With Inhibitor 24f
pdb|3I7G|A Chain A, Mmp-13 In Complex With A Non Zinc-Chelating Inhibitor
pdb|3I7G|B Chain B, Mmp-13 In Complex With A Non Zinc-Chelating Inhibitor
pdb|3I7I|A Chain A, Mmp-13 In Complex With A Non Zinc-Chelating Inhibitor
pdb|3I7I|B Chain B, Mmp-13 In Complex With A Non Zinc-Chelating Inhibitor
pdb|2YIG|A Chain A, Mmp13 In Complex With A Novel Selective Non Zinc Binding
Inhibitor
pdb|2YIG|B Chain B, Mmp13 In Complex With A Novel Selective Non Zinc Binding
Inhibitor
pdb|3ZXH|A Chain A, Mmp-13 Complexed With 2-Napthylsulfonamide Hydroxamic Acid
Inhibitor
pdb|3ZXH|B Chain B, Mmp-13 Complexed With 2-Napthylsulfonamide Hydroxamic Acid
Inhibitor
Length = 171
Score = 78.6 bits (192), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 55/99 (55%), Gaps = 8/99 (8%)
Query: 17 RLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPG 76
+ ++A VWS + L F ++D ADI+I F + H D YPFDGP +LAHAF PG
Sbjct: 30 EVEKAFKKAFKVWSDVTPLNFTRLHDGIADIMISFGIKEHGDFYPFDGPSGLLAHAFPPG 89
Query: 77 SGRGGDAHFDIDEDWMVLGVSRSANADEGKSLELANADE 115
GGDAHFD DE W ++ +G +L L A E
Sbjct: 90 PNYGGDAHFDDDETW--------TSSSKGYNLFLVAAHE 120
>pdb|4A7B|A Chain A, Mmp13 In Complex With A Novel Selective Non Zinc Binding
Inhibitor Cmpd22
pdb|4A7B|B Chain B, Mmp13 In Complex With A Novel Selective Non Zinc Binding
Inhibitor Cmpd22
pdb|3TVC|A Chain A, Human Mmp13 In Complex With L-Glutamate Motif Inhibitor
Length = 169
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 55/99 (55%), Gaps = 8/99 (8%)
Query: 17 RLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPG 76
+ ++A VWS + L F ++D ADI+I F + H D YPFDGP +LAHAF PG
Sbjct: 30 EVEKAFKKAFKVWSDVTPLNFTRLHDGIADIMISFGIKEHGDFYPFDGPSGLLAHAFPPG 89
Query: 77 SGRGGDAHFDIDEDWMVLGVSRSANADEGKSLELANADE 115
GGDAHFD DE W ++ +G +L L A E
Sbjct: 90 PNYGGDAHFDDDETW--------TSSSKGYNLFLVAAHE 120
>pdb|1GKC|A Chain A, Mmp9-inhibitor Complex
pdb|1GKC|B Chain B, Mmp9-inhibitor Complex
Length = 163
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/101 (46%), Positives = 53/101 (52%), Gaps = 7/101 (6%)
Query: 15 RGRLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFF 74
R + D RA +WS + LTF V ADI+I F H DGYPFDG +LAHAF
Sbjct: 29 RAVIDDAFARAFALWSAVTPLTFTRVYSRDADIVIQFGVAEHGDGYPFDGKDGLLAHAFP 88
Query: 75 PGSGRGGDAHFDIDEDWMVLGVSRSANADEGKSLELANADE 115
PG G GDAHFD DE W S +G SL L A E
Sbjct: 89 PGPGIQGDAHFDDDELW-------SLGKGQGYSLFLVAAHE 122
>pdb|1GKD|A Chain A, Mmp9 Active Site Mutant-Inhibitor Complex
pdb|1GKD|B Chain B, Mmp9 Active Site Mutant-Inhibitor Complex
Length = 163
Score = 77.0 bits (188), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/101 (45%), Positives = 53/101 (52%), Gaps = 7/101 (6%)
Query: 15 RGRLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFF 74
R + D RA +WS + LTF V ADI+I F H DGYPFDG +LAHAF
Sbjct: 29 RAVIDDAFARAFALWSAVTPLTFTRVYSRDADIVIQFGVAEHGDGYPFDGKDGLLAHAFP 88
Query: 75 PGSGRGGDAHFDIDEDWMVLGVSRSANADEGKSLELANADE 115
PG G GDAHFD DE W S +G SL L A +
Sbjct: 89 PGPGIQGDAHFDDDELW-------SLGKGQGYSLFLVAAHQ 122
>pdb|2OVX|A Chain A, Mmp-9 Active Site Mutant With Barbiturate Inhibitor
pdb|2OVX|B Chain B, Mmp-9 Active Site Mutant With Barbiturate Inhibitor
pdb|2OVZ|A Chain A, Mmp-9 Active Site Mutant With Phosphinate Inhibitor
pdb|2OVZ|B Chain B, Mmp-9 Active Site Mutant With Phosphinate Inhibitor
pdb|2OW0|A Chain A, Mmp-9 Active Site Mutant With Iodine-Labeled Carboxylate
Inhibitor
pdb|2OW0|B Chain B, Mmp-9 Active Site Mutant With Iodine-Labeled Carboxylate
Inhibitor
pdb|2OW1|A Chain A, Mmp-9 Active Site Mutant With Trifluoromethyl Hydroxamate
Inhibitor
pdb|2OW1|B Chain B, Mmp-9 Active Site Mutant With Trifluoromethyl Hydroxamate
Inhibitor
pdb|2OW2|A Chain A, Mmp-9 Active Site Mutant With Difluoro Butanoic Acid
Inhibitor
pdb|2OW2|B Chain B, Mmp-9 Active Site Mutant With Difluoro Butanoic Acid
Inhibitor
Length = 159
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/101 (45%), Positives = 53/101 (52%), Gaps = 7/101 (6%)
Query: 15 RGRLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFF 74
R + D RA +WS + LTF V ADI+I F H DGYPFDG +LAHAF
Sbjct: 25 RAVIDDAFARAFALWSAVTPLTFTRVYSRDADIVIQFGVAEHGDGYPFDGKDGLLAHAFP 84
Query: 75 PGSGRGGDAHFDIDEDWMVLGVSRSANADEGKSLELANADE 115
PG G GDAHFD DE W S +G SL L A +
Sbjct: 85 PGPGIQGDAHFDDDELW-------SLGKGQGYSLFLVAAHQ 118
>pdb|1RM8|A Chain A, Crystal Structure Of The Catalytic Domain Of Mmp-16MT3-
Mmp: Characterization Of Mt-Mmp Specific Features
Length = 169
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 46/82 (56%), Gaps = 7/82 (8%)
Query: 19 RDELRRALDVWSKHSKLTFREV------NDDR-ADILIYFEKENHWDGYPFDGPGKILAH 71
R +RRA DVW + LTF EV N R DI I F H D PFDG G LAH
Sbjct: 26 RKAIRRAFDVWQNVTPLTFEEVPYSELENGKRDVDITIIFASGFHGDSSPFDGEGGFLAH 85
Query: 72 AFFPGSGRGGDAHFDIDEDWMV 93
A+FPG G GGD HFD DE W +
Sbjct: 86 AYFPGPGIGGDTHFDSDEPWTL 107
>pdb|2XS4|A Chain A, Structure Of Karilysin Catalytic Mmp Domain In Complex
With Magnesium
Length = 167
Score = 75.5 bits (184), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 57/99 (57%), Gaps = 5/99 (5%)
Query: 2 TLKHHP-KRVRHYDRGRLRDELRRALDVWSKHSKLTFREV-NDDRADILIYFEKENHWDG 59
TLK++ H + +R A +WS S L+F +V N ++ADI I +EK NH DG
Sbjct: 12 TLKYYIYNSSSHLTTTERENAIRSAFALWSDKSTLSFIQVYNPNQADIKIKWEKGNHGDG 71
Query: 60 YPFDGPGKILAHAFFP---GSGRGGDAHFDIDEDWMVLG 95
YPFDG ILAHAF+P G G HFD DE+W + G
Sbjct: 72 YPFDGNTGILAHAFYPPPAGGNYAGHLHFDDDENWSING 110
>pdb|2XS3|A Chain A, Structure Of Karilysin Catalytic Mmp Domain
pdb|2XS3|B Chain B, Structure Of Karilysin Catalytic Mmp Domain
Length = 166
Score = 75.5 bits (184), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 57/99 (57%), Gaps = 5/99 (5%)
Query: 2 TLKHHP-KRVRHYDRGRLRDELRRALDVWSKHSKLTFREV-NDDRADILIYFEKENHWDG 59
TLK++ H + +R A +WS S L+F +V N ++ADI I +EK NH DG
Sbjct: 12 TLKYYIYNSSSHLTTTERENAIRSAFALWSDKSTLSFIQVYNPNQADIKIKWEKGNHGDG 71
Query: 60 YPFDGPGKILAHAFFP---GSGRGGDAHFDIDEDWMVLG 95
YPFDG ILAHAF+P G G HFD DE+W + G
Sbjct: 72 YPFDGNTGILAHAFYPPPAGGNYAGHLHFDDDENWSING 110
>pdb|1Q3A|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Matrix
Metalloproteinase 10
pdb|1Q3A|B Chain B, Crystal Structure Of The Catalytic Domain Of Human Matrix
Metalloproteinase 10
pdb|1Q3A|C Chain C, Crystal Structure Of The Catalytic Domain Of Human Matrix
Metalloproteinase 10
Length = 165
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 51/92 (55%), Gaps = 4/92 (4%)
Query: 4 KHHPKRVRHYDRGRLRDE----LRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDG 59
H R+ +Y RD + +AL VW + + LTF + + ADI+I F + H D
Sbjct: 13 THLTYRIVNYTPDLPRDAVDSAIEKALKVWEEVTPLTFSRLYEGEADIMISFAVKEHGDN 72
Query: 60 YPFDGPGKILAHAFFPGSGRGGDAHFDIDEDW 91
Y FDGPG LAHA+ PG G GD HFD DE W
Sbjct: 73 YSFDGPGHSLAHAYPPGPGLYGDIHFDDDEKW 104
>pdb|3MA2|D Chain D, Complex Membrane Type-1 Matrix Metalloproteinase (Mt1-Mmp)
With Tissue Inhibitor Of Metalloproteinase-1 (Timp-1)
pdb|3MA2|A Chain A, Complex Membrane Type-1 Matrix Metalloproteinase (Mt1-Mmp)
With Tissue Inhibitor Of Metalloproteinase-1 (Timp-1)
Length = 181
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 55/101 (54%), Gaps = 11/101 (10%)
Query: 1 MTLKHHPKRVRHYDRGRLRDELRRALDVWSKHSKLTFREV--------NDDRADILIYFE 52
++++ +V Y + +R+A VW + L FREV ++ +ADI+I+F
Sbjct: 15 FCIQNYTPKVGEY---ATYEAIRKAFRVWESATPLRFREVPYAYIREGHEKQADIMIFFA 71
Query: 53 KENHWDGYPFDGPGKILAHAFFPGSGRGGDAHFDIDEDWMV 93
+ H D PFDG G LAHA+FPG GGD HFD E W V
Sbjct: 72 EGFHGDSTPFDGEGGFLAHAYFPGPNIGGDTHFDSAEPWTV 112
>pdb|1BQQ|M Chain M, Crystal Structure Of The Mt1-Mmp--Timp-2 Complex
pdb|1BUV|M Chain M, Crystal Structure Of The Mt1-Mmp-Timp-2 Complex
Length = 174
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 55/101 (54%), Gaps = 11/101 (10%)
Query: 1 MTLKHHPKRVRHYDRGRLRDELRRALDVWSKHSKLTFREV--------NDDRADILIYFE 52
++++ +V Y + +R+A VW + L FREV ++ +ADI+I+F
Sbjct: 13 FCIQNYTPKVGEY---ATYEAIRKAFRVWESATPLRFREVPYAYIREGHEKQADIMIFFA 69
Query: 53 KENHWDGYPFDGPGKILAHAFFPGSGRGGDAHFDIDEDWMV 93
+ H D PFDG G LAHA+FPG GGD HFD E W V
Sbjct: 70 EGFHGDSTPFDGEGGFLAHAYFPGPNIGGDTHFDSAEPWTV 110
>pdb|3V96|B Chain B, Complex Of Matrix Metalloproteinase-10 Catalytic Domain
(Mmp-10cd) With Tissue Inhibitor Of Metalloproteinases-1
(Timp-1)
Length = 165
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 51/92 (55%), Gaps = 4/92 (4%)
Query: 4 KHHPKRVRHYDRGRLRDE----LRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDG 59
H R+ +Y RD + +AL VW + + LTF + + ADI+I F + H D
Sbjct: 13 THLTYRIVNYTPDLPRDAVDSAIEKALKVWEEVTPLTFSRLYEGEADIMISFAVKEHGDF 72
Query: 60 YPFDGPGKILAHAFFPGSGRGGDAHFDIDEDW 91
Y FDGPG LAHA+ PG G GD HFD DE W
Sbjct: 73 YSFDGPGHSLAHAYPPGPGLYGDIHFDDDEKW 104
>pdb|1G9K|A Chain A, Crystal Structure Of A Psychrophilic Alkaline Protease
From Pseudomonas Tac Ii 18
pdb|1O0Q|A Chain A, Crystal Structure Of A Cold Adapted Alkaline Protease From
Pseudomonas Tac Ii 18, Co-Crystallized With 1 Mm Edta
pdb|1O0T|A Chain A, Crystal Structure Of A Cold Adapted Alkaline Protease From
Pseudomonas Tac Ii 18, Co-Crystallized With 5 Mm Edta (5
Days)
pdb|1OM6|A Chain A, Crystal Structure Of A Cold Adapted Alkaline Protease From
Pseudomonas Tac Ii 18, Co-Crystallized With 5mm Edta (2
Months)
pdb|1OM7|A Chain A, Crystal Structure Of A Cold Adapted Alkaline Protease From
Pseudomonas Tac Ii 18, Soaked In 85 Mm Edta
pdb|1OM8|A Chain A, Crystal Structure Of A Cold Adapted Alkaline Protease From
Pseudomonas Tac Ii 18, Co-Crystallyzed With 10 Mm Edta
pdb|1OMJ|A Chain A, Crystal Structure Of A Psychrophilic Alkaline Protease
From Pseudomonas Tac Ii 18
Length = 463
Score = 31.6 bits (70), Expect = 0.13, Method: Composition-based stats.
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 19 RDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSG 78
+++ + +L+ W+ +K+TF E R D + H F A A+ P S
Sbjct: 86 KEQAKLSLESWADVAKVTFTEGPAARGD-------DGHMTFANFSASNGGAAFAYLPNSS 138
Query: 79 RGGDAHFDIDEDWMV 93
R G++ + I++D+ V
Sbjct: 139 RKGESWYLINKDYQV 153
>pdb|1H71|P Chain P, Psychrophilic Protease From Pseudoalteromonas 'tac Ii 18'
Length = 463
Score = 31.2 bits (69), Expect = 0.15, Method: Composition-based stats.
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 19 RDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSG 78
+++ + +L+ W+ +K+TF E R D + H F A A+ P S
Sbjct: 86 KEQAKLSLESWADVAKVTFTEGPAARGD-------DGHQTFANFSASNGGAAFAYLPNSS 138
Query: 79 RGGDAHFDIDEDWMV 93
R G++ + I++D+ V
Sbjct: 139 RKGESWYLINKDYQV 153
>pdb|3U1R|A Chain A, Structure Analysis Of A New Psychrophilic Marine Protease
Length = 480
Score = 31.2 bits (69), Expect = 0.17, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Query: 16 GRLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFP 75
G +++ + +L+ W+ +K+TF E R D + H F A A+ P
Sbjct: 100 GLQKEQAKLSLESWADVAKVTFTEGPAARGD-------DGHMTFANFSASNGGAAFAYLP 152
Query: 76 GSGRGGDAHFDIDEDWMV 93
S R G++ + I++D+ V
Sbjct: 153 NSSRKGESWYLINKDYDV 170
>pdb|3CQF|A Chain A, Crystal Structure Of Anthrolysin O (Alo)
pdb|3CQF|B Chain B, Crystal Structure Of Anthrolysin O (Alo)
Length = 489
Score = 30.4 bits (67), Expect = 0.25, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 57 WDGYPFDGPGK-ILAHAFFPGSGRGGDAHF 85
WD + FD GK +L H + GSG+ AH+
Sbjct: 400 WDEFTFDQNGKEVLTHKTWEGSGKDKTAHY 429
>pdb|3U0S|A Chain A, Crystal Structure Of An Enzyme Redesigned Through
Multiplayer Online Gaming: Ce6
pdb|3U0S|B Chain B, Crystal Structure Of An Enzyme Redesigned Through
Multiplayer Online Gaming: Ce6
Length = 337
Score = 29.3 bits (64), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 35 LTFREVNDDRADILIYFEKENH--WDGYPFDGPGKILAHAF---FPGSGRGGDAHFDIDE 89
+ R +ND R LI E+ W Y GP KI PG+ +GG A D DE
Sbjct: 190 IAVRHMNDGRPYQLIVAEQPTKKLWS-YDIKGPAKIENKKVWGHIPGTHKGGAAGMDFDE 248
Query: 90 D 90
D
Sbjct: 249 D 249
>pdb|3I1C|A Chain A, Crystal Structure Of A Novel Engineered Diels-Alderase:
Da_20_00_a74i
Length = 324
Score = 28.9 bits (63), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 35 LTFREVNDDRADILIYFEKENH--WDGYPFDGPGKILAHAF---FPGSGRGGDAHFDIDE 89
+ R +ND R LI E+ W Y GP KI PG+ +GG A D DE
Sbjct: 177 IAVRHMNDGRPYQLIVAEQPTKKLWS-YDIKGPAKIENKKVWGHIPGTHKGGAAGMDFDE 235
Query: 90 D 90
D
Sbjct: 236 D 236
>pdb|1PUF|A Chain A, Crystal Structure Of Hoxa9 And Pbx1 Homeodomains Bound
To Dna
Length = 77
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 11 RHYDRGRLRDELRRALDVWSKHSKLTFREVNDDRA 45
R Y+ RL + R + +W ++ ++ +++N DRA
Sbjct: 42 RRYEVARLLNLTERQVKIWFQNRRMKMKKINKDRA 76
>pdb|1P8J|A Chain A, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|B Chain B, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|C Chain C, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|D Chain D, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|E Chain E, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|F Chain F, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|G Chain G, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|H Chain H, Crystal Structure Of The Proprotein Convertase Furin
Length = 471
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 58 DGYPFDGPGKILAHAFFPG--SGRGG 81
DG DGP ++ AFF G GRGG
Sbjct: 152 DGKTVDGPARLAEEAFFRGVSQGRGG 177
>pdb|3EDG|A Chain A, Crystal Structure Of Bone Morphogenetic Protein 1
Protease Domain
Length = 202
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 16 GRLRDELRRALDVWSKHSKLTFREVNDDRADILIYF 51
G R R+A+ W KH+ +TF E D+ + I+ +
Sbjct: 26 GSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTY 61
>pdb|3EDH|A Chain A, Crystal Structure Of Bone Morphogenetic Protein 1
Protease Domain In Complex With Partially Bound Dmso
Length = 201
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 16 GRLRDELRRALDVWSKHSKLTFREVNDDRADILIYF 51
G R R+A+ W KH+ +TF E D+ + I+ +
Sbjct: 25 GSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTY 60
>pdb|3EDI|A Chain A, Crystal Structure Of Tolloid-Like Protease 1 (Tll-1)
Protease Domain
Length = 201
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 16 GRLRDELRRALDVWSKHSKLTFREVNDDRADILIYF 51
G R ++A+ W KH+ +TF E +D+ + I+ +
Sbjct: 25 GSQRAMFKQAMRHWEKHTCVTFIERSDEESYIVFTY 60
>pdb|1BAG|A Chain A, Alpha-Amylase From Bacillus Subtilis Complexed With
Maltopentaose
Length = 425
Score = 25.8 bits (55), Expect = 6.6, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 74 FPGSGRGGDAHFDIDEDWMVLGVSRSANADEGKSLELANAD 114
FPG + GD + ED + V+R N G+ EL+N +
Sbjct: 316 FPGKSQIGDRGSALFEDQAITAVNRFHNVMAGQPEELSNPN 356
>pdb|3FBG|A Chain A, Crystal Structure Of A Putative Arginate Lyase From
Staphylococcus Haemolyticus
pdb|3FBG|B Chain B, Crystal Structure Of A Putative Arginate Lyase From
Staphylococcus Haemolyticus
Length = 346
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 93 VLGVSRSANADEGKSLELANADEG 116
V G+SR+ N +EGK+L + N G
Sbjct: 139 VFGISRNRNENEGKTLLIINGAGG 162
>pdb|3I4T|A Chain A, Crystal Structure Of Putative Diphthine Synthase From
Entamoeba Histolytica
Length = 292
Score = 25.4 bits (54), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 4/33 (12%)
Query: 88 DEDWMVLGVSRSANADE----GKSLELANADEG 116
DED MV+G++R A AD+ GK +L + D G
Sbjct: 231 DEDTMVVGMARVACADQKIVYGKMKDLLHYDFG 263
>pdb|1UA7|A Chain A, Crystal Structure Analysis Of Alpha-Amylase From Bacillus
Subtilis Complexed With Acarbose
Length = 422
Score = 25.4 bits (54), Expect = 7.7, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 74 FPGSGRGGDAHFDIDEDWMVLGVSRSANADEGKSLELAN 112
FPG + GD + ED + V+R N G+ EL+N
Sbjct: 313 FPGKSQIGDRGSALFEDQAITAVNRFHNVMAGQPEELSN 351
>pdb|3HB2|P Chain P, Prtc Methionine Mutants: M226i
Length = 462
Score = 25.4 bits (54), Expect = 9.2, Method: Composition-based stats.
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 11/66 (16%)
Query: 20 DELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKI----LAHAFFP 75
++ + +L WS + LTF EV +++ + + Y D G + A+A++P
Sbjct: 86 EQAKLSLQSWSDVANLTFTEVTGNKSANITF-------GNYTRDASGNLDYGTQAYAYYP 138
Query: 76 GSGRGG 81
G+ +G
Sbjct: 139 GNYQGA 144
>pdb|1GO7|P Chain P, The Metzincin's Methionine: Prtc M226c-E189k Double Mutant
Length = 462
Score = 25.4 bits (54), Expect = 9.4, Method: Composition-based stats.
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 11/66 (16%)
Query: 20 DELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKI----LAHAFFP 75
++ + +L WS + LTF EV +++ + + Y D G + A+A++P
Sbjct: 86 EQAKLSLQSWSDVANLTFTEVTGNKSANITF-------GNYTRDASGNLDYGTQAYAYYP 138
Query: 76 GSGRGG 81
G+ +G
Sbjct: 139 GNYQGA 144
>pdb|3HBV|P Chain P, Prtc Methionine Mutants: M226a In-House
pdb|3HDA|P Chain P, Prtc Methionine Mutants: M226a_desy
Length = 462
Score = 25.4 bits (54), Expect = 9.5, Method: Composition-based stats.
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 11/66 (16%)
Query: 20 DELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKI----LAHAFFP 75
++ + +L WS + LTF EV +++ + + Y D G + A+A++P
Sbjct: 86 EQAKLSLQSWSDVANLTFTEVTGNKSANITF-------GNYTRDASGNLDYGTQAYAYYP 138
Query: 76 GSGRGG 81
G+ +G
Sbjct: 139 GNYQGA 144
>pdb|1GO8|P Chain P, The Metzincin's Methionine: Prtc M226l Mutant
Length = 462
Score = 25.4 bits (54), Expect = 9.5, Method: Composition-based stats.
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 11/66 (16%)
Query: 20 DELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKI----LAHAFFP 75
++ + +L WS + LTF EV +++ + + Y D G + A+A++P
Sbjct: 86 EQAKLSLQSWSDVANLTFTEVTGNKSANITF-------GNYTRDASGNLDYGTQAYAYYP 138
Query: 76 GSGRGG 81
G+ +G
Sbjct: 139 GNYQGA 144
>pdb|1K7Q|A Chain A, Prtc From Erwinia Chrysanthemi: E189a Mutant
Length = 479
Score = 25.0 bits (53), Expect = 9.6, Method: Composition-based stats.
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 11/66 (16%)
Query: 20 DELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKI----LAHAFFP 75
++ + +L WS + LTF EV +++ + + Y D G + A+A++P
Sbjct: 103 EQAKLSLQSWSDVANLTFTEVTGNKSANITF-------GNYTRDASGNLDYGTQAYAYYP 155
Query: 76 GSGRGG 81
G+ +G
Sbjct: 156 GNYQGA 161
>pdb|1K7G|A Chain A, Prtc From Erwinia Chrysanthemi
Length = 479
Score = 25.0 bits (53), Expect = 9.9, Method: Composition-based stats.
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 11/66 (16%)
Query: 20 DELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKI----LAHAFFP 75
++ + +L WS + LTF EV +++ + + Y D G + A+A++P
Sbjct: 103 EQAKLSLQSWSDVANLTFTEVTGNKSANITF-------GNYTRDASGNLDYGTQAYAYYP 155
Query: 76 GSGRGG 81
G+ +G
Sbjct: 156 GNYQGA 161
>pdb|1K7I|A Chain A, Prtc From Erwinia Chrysanthemi: Y228f Mutant
Length = 479
Score = 25.0 bits (53), Expect = 9.9, Method: Composition-based stats.
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 11/66 (16%)
Query: 20 DELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKI----LAHAFFP 75
++ + +L WS + LTF EV +++ + + Y D G + A+A++P
Sbjct: 103 EQAKLSLQSWSDVANLTFTEVTGNKSANITF-------GNYTRDASGNLDYGTQAYAYYP 155
Query: 76 GSGRGG 81
G+ +G
Sbjct: 156 GNYQGA 161
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.140 0.443
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,543,871
Number of Sequences: 62578
Number of extensions: 203795
Number of successful extensions: 440
Number of sequences better than 100.0: 126
Number of HSP's better than 100.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 343
Number of HSP's gapped (non-prelim): 126
length of query: 121
length of database: 14,973,337
effective HSP length: 83
effective length of query: 38
effective length of database: 9,779,363
effective search space: 371615794
effective search space used: 371615794
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)