BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5960
(121 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q02853|MMP11_MOUSE Stromelysin-3 OS=Mus musculus GN=Mmp11 PE=1 SV=2
Length = 492
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 43/79 (54%), Positives = 54/79 (68%)
Query: 15 RGRLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFF 74
R ++R + AL VWS+ + LTF EV++ RADI+I F + H D PFDGPG ILAHAFF
Sbjct: 127 REQVRQTVAEALQVWSEVTPLTFTEVHEGRADIMIDFARYWHGDNLPFDGPGGILAHAFF 186
Query: 75 PGSGRGGDAHFDIDEDWMV 93
P + R GD HFD DE W +
Sbjct: 187 PKTHREGDVHFDYDETWTI 205
>sp|Q499S5|MMP11_RAT Stromelysin-3 OS=Rattus norvegicus GN=Mmp11 PE=1 SV=1
Length = 491
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 43/79 (54%), Positives = 54/79 (68%)
Query: 15 RGRLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFF 74
R ++R + AL VWS+ + LTF EV++ RADI+I F + H D PFDGPG ILAHAFF
Sbjct: 127 REQVRQTVAEALRVWSEVTPLTFTEVHEGRADIMIDFTRYWHGDNLPFDGPGGILAHAFF 186
Query: 75 PGSGRGGDAHFDIDEDWMV 93
P + R GD HFD DE W +
Sbjct: 187 PKTHREGDVHFDYDETWTI 205
>sp|P33436|MMP2_RAT 72 kDa type IV collagenase OS=Rattus norvegicus GN=Mmp2 PE=2 SV=2
Length = 662
Score = 87.4 bits (215), Expect = 2e-17, Method: Composition-based stats.
Identities = 40/74 (54%), Positives = 49/74 (66%)
Query: 20 DELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGR 79
D RAL VWS + L F ++D ADI+I F + H DGYPFDG +LAHAF PG+G
Sbjct: 142 DAFARALKVWSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGTGV 201
Query: 80 GGDAHFDIDEDWMV 93
GGD+HFD DE W +
Sbjct: 202 GGDSHFDDDELWTL 215
>sp|P21692|MMP1_PIG Interstitial collagenase OS=Sus scrofa GN=MMP1 PE=1 SV=2
Length = 469
Score = 87.4 bits (215), Expect = 2e-17, Method: Composition-based stats.
Identities = 50/119 (42%), Positives = 71/119 (59%), Gaps = 8/119 (6%)
Query: 5 HHPKRVRHYDRGRLRDELRRALD----VWSKHSKLTFREVNDDRADILIYFEKENHWDGY 60
H R+ +Y R+++ RA++ +WS S LTF +V++ +ADI+I F + +H D
Sbjct: 113 HLTYRIENYTPDLSREDVDRAIEKAFQLWSNVSPLTFTKVSEGQADIMISFVRGDHRDNS 172
Query: 61 PFDGPGKILAHAFFPGSGRGGDAHFDIDEDWMV----LGVSRSANADEGKSLELANADE 115
PFDGPG LAHAF PG G GGDAHFD DE W + R A + G SL L+++ +
Sbjct: 173 PFDGPGGNLAHAFQPGPGIGGDAHFDEDERWTKNFRDYNLYRVAAHELGHSLGLSHSTD 231
>sp|P33434|MMP2_MOUSE 72 kDa type IV collagenase OS=Mus musculus GN=Mmp2 PE=2 SV=1
Length = 662
Score = 87.4 bits (215), Expect = 2e-17, Method: Composition-based stats.
Identities = 40/74 (54%), Positives = 49/74 (66%)
Query: 20 DELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGR 79
D RAL VWS + L F ++D ADI+I F + H DGYPFDG +LAHAF PG+G
Sbjct: 142 DAFARALKVWSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGTGV 201
Query: 80 GGDAHFDIDEDWMV 93
GGD+HFD DE W +
Sbjct: 202 GGDSHFDDDELWTL 215
>sp|P24347|MMP11_HUMAN Stromelysin-3 OS=Homo sapiens GN=MMP11 PE=1 SV=3
Length = 488
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 52/77 (67%)
Query: 17 RLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPG 76
++R + AL VWS + LTF EV++ RADI+I F + H D PFDGPG ILAHAFFP
Sbjct: 125 QVRQTMAEALKVWSDVTPLTFTEVHEGRADIMIDFARYWHGDDLPFDGPGGILAHAFFPK 184
Query: 77 SGRGGDAHFDIDEDWMV 93
+ R GD HFD DE W +
Sbjct: 185 THREGDVHFDYDETWTI 201
>sp|Q11005|MMP11_XENLA Stromelysin-3 OS=Xenopus laevis GN=mmp11 PE=1 SV=1
Length = 477
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 53/77 (68%)
Query: 17 RLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPG 76
++R + AL VWS+ + LTF EV++ R+DI+I F + H D PFDGPG ILAHAFFP
Sbjct: 113 KVRRTIAEALKVWSEVTPLTFTEVHEGRSDIIIDFTRYWHGDNLPFDGPGGILAHAFFPK 172
Query: 77 SGRGGDAHFDIDEDWMV 93
+ R GD HFD DE W +
Sbjct: 173 THREGDVHFDYDEAWTI 189
>sp|P50757|MMP2_RABIT 72 kDa type IV collagenase OS=Oryctolagus cuniculus GN=MMP2 PE=2
SV=1
Length = 662
Score = 86.3 bits (212), Expect = 5e-17, Method: Composition-based stats.
Identities = 39/74 (52%), Positives = 48/74 (64%)
Query: 20 DELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGR 79
D RA VWS + L F ++D ADI+I F + H DGYPFDG +LAHAF PG+G
Sbjct: 142 DAFARAFQVWSNVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGTGV 201
Query: 80 GGDAHFDIDEDWMV 93
GGD+HFD DE W +
Sbjct: 202 GGDSHFDDDELWTL 215
>sp|P08253|MMP2_HUMAN 72 kDa type IV collagenase OS=Homo sapiens GN=MMP2 PE=1 SV=2
Length = 660
Score = 86.3 bits (212), Expect = 6e-17, Method: Composition-based stats.
Identities = 39/74 (52%), Positives = 48/74 (64%)
Query: 20 DELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGR 79
D RA VWS + L F ++D ADI+I F + H DGYPFDG +LAHAF PG+G
Sbjct: 142 DAFARAFQVWSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGTGV 201
Query: 80 GGDAHFDIDEDWMV 93
GGD+HFD DE W +
Sbjct: 202 GGDSHFDDDELWTL 215
>sp|P28053|MMP1_BOVIN Interstitial collagenase OS=Bos taurus GN=MMP1 PE=1 SV=1
Length = 469
Score = 85.9 bits (211), Expect = 7e-17, Method: Composition-based stats.
Identities = 48/115 (41%), Positives = 68/115 (59%), Gaps = 8/115 (6%)
Query: 9 RVRHY----DRGRLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDG 64
R+ +Y R + + +A +WS + LTF +V++ +ADI+I F + +H D PFDG
Sbjct: 117 RIENYTPDLSRADVDQAIEKAFQLWSNVTPLTFTKVSEGQADIMISFVRGDHRDNSPFDG 176
Query: 65 PGKILAHAFFPGSGRGGDAHFDIDEDWMV----LGVSRSANADEGKSLELANADE 115
PG LAHAF PG+G GGDAHFD DE W + R A + G SL LA++ +
Sbjct: 177 PGGNLAHAFQPGAGIGGDAHFDDDEWWTSNFQDYNLYRVAAHEFGHSLGLAHSTD 231
>sp|Q90611|MMP2_CHICK 72 kDa type IV collagenase OS=Gallus gallus GN=MMP2 PE=1 SV=1
Length = 663
Score = 85.9 bits (211), Expect = 7e-17, Method: Composition-based stats.
Identities = 40/74 (54%), Positives = 47/74 (63%)
Query: 20 DELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGR 79
D RA VWS + L F +ND ADI+I F + H DGYPFDG +LAHAF PG G
Sbjct: 139 DAFARAFKVWSDVTPLRFNRINDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGPGI 198
Query: 80 GGDAHFDIDEDWMV 93
GGD+HFD DE W +
Sbjct: 199 GGDSHFDDDELWTL 212
>sp|P09237|MMP7_HUMAN Matrilysin OS=Homo sapiens GN=MMP7 PE=1 SV=1
Length = 267
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/70 (57%), Positives = 48/70 (68%)
Query: 22 LRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGRGG 81
+ +AL++W K L FR+V ADI+I F + H D YPFDGPG LAHAF PG+G GG
Sbjct: 129 VSKALNMWGKEIPLHFRKVVWGTADIMIGFARGAHGDSYPFDGPGNTLAHAFAPGTGLGG 188
Query: 82 DAHFDIDEDW 91
DAHFD DE W
Sbjct: 189 DAHFDEDERW 198
>sp|O70138|MMP8_MOUSE Neutrophil collagenase OS=Mus musculus GN=Mmp8 PE=2 SV=2
Length = 465
Score = 84.7 bits (208), Expect = 2e-16, Method: Composition-based stats.
Identities = 42/89 (47%), Positives = 51/89 (57%), Gaps = 4/89 (4%)
Query: 3 LKHHPKRVRHYDRGRLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPF 62
+ H P+ R ++ + +A VWS S LTF E+ ADI I F +H D PF
Sbjct: 118 INHTPQ----LSRAEVKTAIEKAFHVWSVASPLTFTEILQGEADINIAFVSRDHGDNSPF 173
Query: 63 DGPGKILAHAFFPGSGRGGDAHFDIDEDW 91
DGP ILAHAF PG G GGDAHFD +E W
Sbjct: 174 DGPNGILAHAFQPGQGIGGDAHFDSEETW 202
>sp|O88766|MMP8_RAT Neutrophil collagenase OS=Rattus norvegicus GN=Mmp8 PE=2 SV=1
Length = 466
Score = 84.3 bits (207), Expect = 2e-16, Method: Composition-based stats.
Identities = 41/89 (46%), Positives = 52/89 (58%), Gaps = 4/89 (4%)
Query: 3 LKHHPKRVRHYDRGRLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPF 62
+ H P+ + ++ E+ +A +WS S LTF E + ADI I F +H D PF
Sbjct: 119 INHTPQ----MSKAEVKTEIEKAFKIWSVPSTLTFTETLEGEADINIAFVSRDHGDNSPF 174
Query: 63 DGPGKILAHAFFPGSGRGGDAHFDIDEDW 91
DGP ILAHAF PG G GGDAHFD +E W
Sbjct: 175 DGPNGILAHAFQPGRGIGGDAHFDSEETW 203
>sp|P03957|MMP3_RAT Stromelysin-1 OS=Rattus norvegicus GN=Mmp3 PE=1 SV=1
Length = 475
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 54/91 (59%), Gaps = 4/91 (4%)
Query: 5 HHPKRVRHYD----RGRLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGY 60
H R+ +Y R + + RAL VW + + LTF +++ ADI+I F E H D
Sbjct: 111 HISYRIVNYTLDLPRESVDSAIERALKVWEEVTPLTFSRISEGEADIMISFAVEEHGDFI 170
Query: 61 PFDGPGKILAHAFFPGSGRGGDAHFDIDEDW 91
PFDGPG +LAHA+ PG G GDAHFD DE W
Sbjct: 171 PFDGPGMVLAHAYAPGPGTNGDAHFDDDERW 201
>sp|Q28397|MMP3_HORSE Stromelysin-1 OS=Equus caballus GN=MMP3 PE=2 SV=1
Length = 477
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 56/91 (61%), Gaps = 4/91 (4%)
Query: 5 HHPKRVRHYDRGRLRD----ELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGY 60
H R+ +Y + RD ++ +AL +W + + LTF + + ADI+I F H D +
Sbjct: 113 HLTYRIVNYTQDLPRDAVDSDVEKALKIWEEVTPLTFSRIYEGEADIMITFAVREHGDFF 172
Query: 61 PFDGPGKILAHAFFPGSGRGGDAHFDIDEDW 91
PFDGPGK+LAHA+ PG G GDAHFD DE W
Sbjct: 173 PFDGPGKVLAHAYPPGPGMNGDAHFDDDEHW 203
>sp|P39900|MMP12_HUMAN Macrophage metalloelastase OS=Homo sapiens GN=MMP12 PE=1 SV=1
Length = 470
Score = 82.8 bits (203), Expect = 5e-16, Method: Composition-based stats.
Identities = 39/70 (55%), Positives = 47/70 (67%)
Query: 22 LRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGRGG 81
+R+A VWS + L F ++N ADIL+ F + H D + FDG G ILAHAF PGSG GG
Sbjct: 134 IRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDFHAFDGKGGILAHAFGPGSGIGG 193
Query: 82 DAHFDIDEDW 91
DAHFD DE W
Sbjct: 194 DAHFDEDEFW 203
>sp|Q9XSZ5|MMP1_HORSE Interstitial collagenase OS=Equus caballus GN=MMP1 PE=2 SV=1
Length = 469
Score = 82.4 bits (202), Expect = 7e-16, Method: Composition-based stats.
Identities = 48/119 (40%), Positives = 67/119 (56%), Gaps = 8/119 (6%)
Query: 5 HHPKRVRHYD----RGRLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGY 60
H R+ +Y R + + +A +WS S LTF +V++ +ADI+I F + +H D
Sbjct: 113 HLTYRIENYTPDLPRADVDQAIEKAFQLWSNVSPLTFTKVSEGQADIMISFVRGDHRDNS 172
Query: 61 PFDGPGKILAHAFFPGSGRGGDAHFDIDEDWMV----LGVSRSANADEGKSLELANADE 115
PFDGPG LAHAF PG GGDAHFD DE W + R A + G SL L+++ +
Sbjct: 173 PFDGPGGNLAHAFQPGPRIGGDAHFDEDETWTSNFRNYNLYRVAAHEFGHSLGLSHSTD 231
>sp|Q9Y5R2|MMP24_HUMAN Matrix metalloproteinase-24 OS=Homo sapiens GN=MMP24 PE=2 SV=1
Length = 645
Score = 82.4 bits (202), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 50/82 (60%), Gaps = 7/82 (8%)
Query: 19 RDELRRALDVWSKHSKLTFREV-----NDDR--ADILIYFEKENHWDGYPFDGPGKILAH 71
R +R+A DVW K + LTF EV DR ADI+I+F H D PFDG G LAH
Sbjct: 185 RKAIRQAFDVWQKVTPLTFEEVPYHEIKSDRKEADIMIFFASGFHGDSSPFDGEGGFLAH 244
Query: 72 AFFPGSGRGGDAHFDIDEDWMV 93
A+FPG G GGD HFD DE W +
Sbjct: 245 AYFPGPGIGGDTHFDSDEPWTL 266
>sp|O13065|MMP18_XENLA Matrix metalloproteinase-18 OS=Xenopus laevis GN=mmp18 PE=2 SV=1
Length = 467
Score = 82.4 bits (202), Expect = 8e-16, Method: Composition-based stats.
Identities = 38/70 (54%), Positives = 47/70 (67%)
Query: 22 LRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGRGG 81
++RA VWS + LTF + ++ +DI I F +H D PFDG G ILAHAF PG+G GG
Sbjct: 134 IQRAFKVWSDVTPLTFTRIYNEVSDIEISFTAGDHKDNSPFDGSGGILAHAFQPGNGIGG 193
Query: 82 DAHFDIDEDW 91
DAHFD DE W
Sbjct: 194 DAHFDEDETW 203
>sp|P50280|MMP7_RAT Matrilysin OS=Rattus norvegicus GN=Mmp7 PE=2 SV=1
Length = 267
Score = 82.4 bits (202), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 38/70 (54%), Positives = 47/70 (67%)
Query: 22 LRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGRGG 81
++RAL +WS L F+ V+ ADI+I F + +H D +PFDGPG L HAF PG G GG
Sbjct: 132 VKRALRMWSMQIPLNFKRVSWGTADIIIGFARGDHGDNFPFDGPGNTLGHAFAPGPGLGG 191
Query: 82 DAHFDIDEDW 91
DAHFD DE W
Sbjct: 192 DAHFDKDEYW 201
>sp|Q99PW6|MMP24_RAT Matrix metalloproteinase-24 OS=Rattus norvegicus GN=Mmp24 PE=2 SV=1
Length = 618
Score = 82.0 bits (201), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 44/90 (48%), Positives = 52/90 (57%), Gaps = 7/90 (7%)
Query: 19 RDELRRALDVWSKHSKLTFREV-----NDDR--ADILIYFEKENHWDGYPFDGPGKILAH 71
R +R+A DVW K + LTF EV DR ADI+I+F H D PFDG G LAH
Sbjct: 158 RKAIRQAFDVWQKVTPLTFEEVPYHEIKSDRKEADIMIFFASGFHGDSSPFDGEGGFLAH 217
Query: 72 AFFPGSGRGGDAHFDIDEDWMVLGVSRSAN 101
A+FPG G GGD HFD DE W + + N
Sbjct: 218 AYFPGPGIGGDTHFDSDEPWTLGNANHDGN 247
>sp|Q9R0S2|MMP24_MOUSE Matrix metalloproteinase-24 OS=Mus musculus GN=Mmp24 PE=1 SV=2
Length = 618
Score = 82.0 bits (201), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 44/90 (48%), Positives = 52/90 (57%), Gaps = 7/90 (7%)
Query: 19 RDELRRALDVWSKHSKLTFREV-----NDDR--ADILIYFEKENHWDGYPFDGPGKILAH 71
R +R+A DVW K + LTF EV DR ADI+I+F H D PFDG G LAH
Sbjct: 158 RKAIRQAFDVWQKVTPLTFEEVPYHEIKSDRKEADIMIFFASGFHGDSSPFDGEGGFLAH 217
Query: 72 AFFPGSGRGGDAHFDIDEDWMVLGVSRSAN 101
A+FPG G GGD HFD DE W + + N
Sbjct: 218 AYFPGPGIGGDTHFDSDEPWTLGNANHDGN 247
>sp|P03956|MMP1_HUMAN Interstitial collagenase OS=Homo sapiens GN=MMP1 PE=1 SV=3
Length = 469
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 68/119 (57%), Gaps = 8/119 (6%)
Query: 5 HHPKRVRHYD----RGRLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGY 60
H R+ +Y R + + +A +WS + LTF +V++ +ADI+I F + +H D
Sbjct: 113 HLTYRIENYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSEGQADIMISFVRGDHRDNS 172
Query: 61 PFDGPGKILAHAFFPGSGRGGDAHFDIDEDWM----VLGVSRSANADEGKSLELANADE 115
PFDGPG LAHAF PG G GGDAHFD DE W + R A + G SL L+++ +
Sbjct: 173 PFDGPGGNLAHAFQPGPGIGGDAHFDEDERWTNNFREYNLHRVAAHELGHSLGLSHSTD 231
>sp|P22894|MMP8_HUMAN Neutrophil collagenase OS=Homo sapiens GN=MMP8 PE=1 SV=1
Length = 467
Score = 82.0 bits (201), Expect = 1e-15, Method: Composition-based stats.
Identities = 47/115 (40%), Positives = 64/115 (55%), Gaps = 8/115 (6%)
Query: 9 RVRHYDRGRLRDELRRAL----DVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDG 64
R+R+Y E+ RA+ ++WS S L F ++ ADI I F + +H D PFDG
Sbjct: 116 RIRNYTPQLSEAEVERAIKDAFELWSVASPLIFTRISQGEADINIAFYQRDHGDNSPFDG 175
Query: 65 PGKILAHAFFPGSGRGGDAHFDIDEDWMVLGVSRS----ANADEGKSLELANADE 115
P ILAHAF PG G GGDAHFD +E W + + A + G SL LA++ +
Sbjct: 176 PNGILAHAFQPGQGIGGDAHFDAEETWTNTSANYNLFLVAAHEFGHSLGLAHSSD 230
>sp|P08254|MMP3_HUMAN Stromelysin-1 OS=Homo sapiens GN=MMP3 PE=1 SV=2
Length = 477
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 46/70 (65%)
Query: 22 LRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGRGG 81
+ +AL VW + + LTF + + ADI+I F H D YPFDGPG +LAHA+ PG G G
Sbjct: 134 VEKALKVWEEVTPLTFSRLYEGEADIMISFAVREHGDFYPFDGPGNVLAHAYAPGPGING 193
Query: 82 DAHFDIDEDW 91
DAHFD DE W
Sbjct: 194 DAHFDDDEQW 203
>sp|Q9GLE5|MMP2_BOVIN 72 kDa type IV collagenase OS=Bos taurus GN=MMP2 PE=2 SV=1
Length = 661
Score = 81.6 bits (200), Expect = 1e-15, Method: Composition-based stats.
Identities = 38/70 (54%), Positives = 45/70 (64%)
Query: 20 DELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGR 79
D RA VWS + L F ++D ADI+I F + H DGYPFDG +LAHAF PG G
Sbjct: 143 DAFARAFQVWSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGPGV 202
Query: 80 GGDAHFDIDE 89
GGD+HFD DE
Sbjct: 203 GGDSHFDDDE 212
>sp|Q10738|MMP7_MOUSE Matrilysin OS=Mus musculus GN=Mmp7 PE=2 SV=1
Length = 264
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 47/70 (67%)
Query: 22 LRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGRGG 81
+++AL +WS L F+ V+ ADI+I F + +H D +PFDGPG L HAF PG G GG
Sbjct: 129 VKKALRMWSMQIPLNFKRVSWGTADIIIGFARRDHGDSFPFDGPGNTLGHAFAPGPGLGG 188
Query: 82 DAHFDIDEDW 91
DAHFD DE W
Sbjct: 189 DAHFDKDEYW 198
>sp|P41245|MMP9_MOUSE Matrix metalloproteinase-9 OS=Mus musculus GN=Mmp9 PE=2 SV=2
Length = 730
Score = 80.9 bits (198), Expect = 2e-15, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 46/77 (59%)
Query: 15 RGRLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFF 74
R + D RA VW + + LTF V ADI+I F H DGYPFDG +LAHAF
Sbjct: 134 RDMIDDAFARAFAVWGEVAPLTFTRVYGPEADIVIQFGVAEHGDGYPFDGKDGLLAHAFP 193
Query: 75 PGSGRGGDAHFDIDEDW 91
PG+G GDAHFD DE W
Sbjct: 194 PGAGVQGDAHFDDDELW 210
>sp|O55123|MMP10_MOUSE Stromelysin-2 OS=Mus musculus GN=Mmp10 PE=2 SV=1
Length = 476
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 56/101 (55%), Gaps = 8/101 (7%)
Query: 15 RGRLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFF 74
R + + +AL VW + + LTF +++ ADI+I F H D YPFDGPG+ LAHA+
Sbjct: 127 RQSVDSAIEKALKVWEEVTPLTFSRISEGEADIMISFAVGEHGDFYPFDGPGQSLAHAYP 186
Query: 75 PGSGRGGDAHFDIDEDWMVLGVSRSANADEGKSLELANADE 115
PG G GD HFD DE W + A G +L L A E
Sbjct: 187 PGPGFYGDVHFDDDEKWTL--------APSGTNLFLVAAHE 219
>sp|P23097|MMP13_RAT Collagenase 3 (Fragment) OS=Rattus norvegicus GN=Mmp13 PE=1 SV=1
Length = 466
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/70 (54%), Positives = 45/70 (64%)
Query: 22 LRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGRGG 81
R+A VWS + L F ++D ADI+I F + H D YPFDGP +LAHAF PG GG
Sbjct: 133 FRKAFKVWSDVTPLNFTRIHDGTADIMISFGTKEHGDFYPFDGPSGLLAHAFPPGPNLGG 192
Query: 82 DAHFDIDEDW 91
DAHFD DE W
Sbjct: 193 DAHFDDDETW 202
>sp|P55032|MMP7_FELCA Matrilysin (Fragment) OS=Felis catus GN=MMP7 PE=2 SV=1
Length = 262
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 46/68 (67%)
Query: 24 RALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGRGGDA 83
+AL++WSK L+FR V DI+I F + H D YPFDGPG LAHA+ PG G GGDA
Sbjct: 126 KALNMWSKEIPLSFRRVVLGIPDIVIGFARGAHGDFYPFDGPGGTLAHAYEPGPGLGGDA 185
Query: 84 HFDIDEDW 91
HFD DE W
Sbjct: 186 HFDEDERW 193
>sp|P33435|MMP13_MOUSE Collagenase 3 OS=Mus musculus GN=Mmp13 PE=1 SV=1
Length = 472
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/70 (54%), Positives = 44/70 (62%)
Query: 22 LRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGRGG 81
R+A VWS + L F + D ADI+I F + H D YPFDGP +LAHAF PG GG
Sbjct: 139 FRKAFKVWSDVTPLNFTRIYDGTADIMISFGTKEHGDFYPFDGPSGLLAHAFPPGPNYGG 198
Query: 82 DAHFDIDEDW 91
DAHFD DE W
Sbjct: 199 DAHFDDDETW 208
>sp|P79287|MMP20_PIG Matrix metalloproteinase-20 OS=Sus scrofa GN=MMP20 PE=2 SV=1
Length = 483
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 43/72 (59%)
Query: 22 LRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGRGG 81
+ AL WS L+F VN ADI+I FE +H D YPFDGP LAHAF PG G GG
Sbjct: 142 MEMALQAWSSAVPLSFVRVNAGEADIMISFETGDHGDSYPFDGPRGTLAHAFAPGEGLGG 201
Query: 82 DAHFDIDEDWMV 93
D HFD E W +
Sbjct: 202 DTHFDNAEKWTM 213
>sp|P28862|MMP3_MOUSE Stromelysin-1 OS=Mus musculus GN=Mmp3 PE=2 SV=2
Length = 477
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 53/91 (58%), Gaps = 4/91 (4%)
Query: 5 HHPKRVRHYD----RGRLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGY 60
H R+ +Y R + + +AL VW + + LTF +++ ADI+I F H D
Sbjct: 113 HITYRIVNYTPDLPRQSVDSAIEKALKVWEEVTPLTFSRISEGEADIMISFAVGEHGDFV 172
Query: 61 PFDGPGKILAHAFFPGSGRGGDAHFDIDEDW 91
PFDGPG +LAHA+ PG G GDAHFD DE W
Sbjct: 173 PFDGPGTVLAHAYAPGPGINGDAHFDDDERW 203
>sp|P91953|HE_HEMPU 50 kDa hatching enzyme OS=Hemicentrotus pulcherrimus PE=1 SV=1
Length = 591
Score = 80.1 bits (196), Expect = 3e-15, Method: Composition-based stats.
Identities = 50/104 (48%), Positives = 59/104 (56%), Gaps = 11/104 (10%)
Query: 18 LRDELRRALDVWSKHSKLTFREVNDDRA-DILIYFEKENHWDGYPFDGPGKILAHAFFPG 76
+++ELRRA VW S LTFREV D + DI I F H DG FDG G +LAHAF P
Sbjct: 199 IKNELRRAFQVWDDVSSLTFREVVDSSSVDIRIKFGSYEHGDGISFDGQGGVLAHAFLP- 257
Query: 77 SGRGGDAHFDIDEDWMVLGVSRSAN-----ADE-GKSLELANAD 114
R GDAHFD E W + G + N A E G SL L ++D
Sbjct: 258 --RNGDAHFDDSERWTI-GTNSGTNLFQVAAHEFGHSLGLYHSD 298
>sp|P14780|MMP9_HUMAN Matrix metalloproteinase-9 OS=Homo sapiens GN=MMP9 PE=1 SV=3
Length = 707
Score = 80.1 bits (196), Expect = 4e-15, Method: Composition-based stats.
Identities = 49/109 (44%), Positives = 58/109 (53%), Gaps = 5/109 (4%)
Query: 15 RGRLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFF 74
R + D RA +WS + LTF V ADI+I F H DGYPFDG +LAHAF
Sbjct: 134 RAVIDDAFARAFALWSAVTPLTFTRVYSRDADIVIQFGVAEHGDGYPFDGKDGLLAHAFP 193
Query: 75 PGSGRGGDAHFDIDEDWM----VLGVSRSANADEGKSLELANADEGRRH 119
PG G GDAHFD DE W V+ +R NAD G + EGR +
Sbjct: 194 PGPGIQGDAHFDDDELWSLGKGVVVPTRFGNAD-GAACHFPFIFEGRSY 241
>sp|O60882|MMP20_HUMAN Matrix metalloproteinase-20 OS=Homo sapiens GN=MMP20 PE=1 SV=3
Length = 483
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 43/72 (59%)
Query: 22 LRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGRGG 81
+ AL WS L+F +N ADI+I FE +H D YPFDGP LAHAF PG G GG
Sbjct: 142 VEMALQAWSSAVPLSFVRINSGEADIMISFENGDHGDSYPFDGPRGTLAHAFAPGEGLGG 201
Query: 82 DAHFDIDEDWMV 93
D HFD E W +
Sbjct: 202 DTHFDNAEKWTM 213
>sp|O77656|MMP13_BOVIN Collagenase 3 OS=Bos taurus GN=MMP13 PE=2 SV=1
Length = 471
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 54/94 (57%), Gaps = 8/94 (8%)
Query: 22 LRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGRGG 81
R+A VWS + L F +++ ADI+I F + H D YPFDGP +LAHAF PG GG
Sbjct: 138 FRKAFKVWSDVTPLNFTRIHNGTADIMISFGTKEHGDFYPFDGPSGLLAHAFPPGPNYGG 197
Query: 82 DAHFDIDEDWMVLGVSRSANADEGKSLELANADE 115
DAHFD DE W ++ +G +L L A E
Sbjct: 198 DAHFDDDETW--------TSSSKGYNLFLVAAHE 223
>sp|O18767|MMP20_BOVIN Matrix metalloproteinase-20 OS=Bos taurus GN=MMP20 PE=1 SV=1
Length = 481
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 9 RVRHYDRGRLRDELRRALDV----WSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDG 64
R+ Y E+ RA+++ WS L F +N ADI+I FE +H D YPFDG
Sbjct: 123 RISKYTPSMTPAEVDRAMEMALRAWSSAVPLNFVRINAGEADIMISFETGDHGDSYPFDG 182
Query: 65 PGKILAHAFFPGSGRGGDAHFDIDEDWMV 93
P LAHAF PG G GGD HFD E W +
Sbjct: 183 PRGTLAHAFAPGEGLGGDTHFDNAEKWTM 211
>sp|Q9EPL5|MMP1A_MOUSE Interstitial collagenase A OS=Mus musculus GN=Mmp1a PE=2 SV=1
Length = 464
Score = 79.3 bits (194), Expect = 5e-15, Method: Composition-based stats.
Identities = 35/74 (47%), Positives = 47/74 (63%)
Query: 18 LRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGS 77
+ D + RA VWS + LTF+ V ++ DI++ F + +H D PFDGP LAH F PG
Sbjct: 127 VEDAIARAFRVWSDVTPLTFQRVFEEEGDIVLSFHRGDHGDNNPFDGPNYKLAHTFQPGP 186
Query: 78 GRGGDAHFDIDEDW 91
G GGD H+D+DE W
Sbjct: 187 GLGGDVHYDLDETW 200
>sp|P51512|MMP16_HUMAN Matrix metalloproteinase-16 OS=Homo sapiens GN=MMP16 PE=1 SV=2
Length = 607
Score = 79.3 bits (194), Expect = 6e-15, Method: Composition-based stats.
Identities = 42/82 (51%), Positives = 46/82 (56%), Gaps = 7/82 (8%)
Query: 19 RDELRRALDVWSKHSKLTFREV------NDDR-ADILIYFEKENHWDGYPFDGPGKILAH 71
R +RRA DVW + LTF EV N R DI I F H D PFDG G LAH
Sbjct: 149 RKAIRRAFDVWQNVTPLTFEEVPYSELENGKRDVDITIIFASGFHGDSSPFDGEGGFLAH 208
Query: 72 AFFPGSGRGGDAHFDIDEDWMV 93
A+FPG G GGD HFD DE W +
Sbjct: 209 AYFPGPGIGGDTHFDSDEPWTL 230
>sp|Q9R0S3|MMP17_MOUSE Matrix metalloproteinase-17 OS=Mus musculus GN=Mmp17 PE=1 SV=3
Length = 578
Score = 79.3 bits (194), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 47/90 (52%), Positives = 54/90 (60%), Gaps = 7/90 (7%)
Query: 9 RVRHYDR----GR--LRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPF 62
RVR + R GR +R + AL VWS + L F EV + ADI I F K +H DGYPF
Sbjct: 140 RVRTFPRDSPLGRDTVRALMYYALKVWSDITPLNFHEVAGNAADIQIDFSKADHNDGYPF 199
Query: 63 DGPGKILAHAFFPGS-GRGGDAHFDIDEDW 91
DGPG +AHAFFPG GD HFD DE W
Sbjct: 200 DGPGGTVAHAFFPGDHHTAGDTHFDDDEPW 229
>sp|P57748|MMP20_MOUSE Matrix metalloproteinase-20 OS=Mus musculus GN=Mmp20 PE=2 SV=1
Length = 482
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 43/72 (59%)
Query: 22 LRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGRGG 81
++ AL WS L F +N ADI+I FE +H D YPFDGP LAHAF PG G GG
Sbjct: 141 IQMALHAWSTAVPLNFVRINSGEADIMISFETGDHGDSYPFDGPRGTLAHAFAPGEGLGG 200
Query: 82 DAHFDIDEDWMV 93
D HFD E W +
Sbjct: 201 DTHFDNAEKWTM 212
>sp|O18733|MMP9_CANFA Matrix metalloproteinase-9 OS=Canis familiaris GN=MMP9 PE=2 SV=2
Length = 704
Score = 79.0 bits (193), Expect = 8e-15, Method: Composition-based stats.
Identities = 40/79 (50%), Positives = 46/79 (58%)
Query: 15 RGRLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFF 74
R + D RA VWS + LTF V ADI+I F H DGYPFDG +LAHAF
Sbjct: 134 RDVIDDAFARAFAVWSAVTPLTFTRVYGPEADIIIQFGVREHGDGYPFDGKNGLLAHAFP 193
Query: 75 PGSGRGGDAHFDIDEDWMV 93
PG G GDAHFD +E W +
Sbjct: 194 PGPGIQGDAHFDDEELWTL 212
>sp|Q9WTR0|MMP16_MOUSE Matrix metalloproteinase-16 OS=Mus musculus GN=Mmp16 PE=2 SV=3
Length = 607
Score = 79.0 bits (193), Expect = 8e-15, Method: Composition-based stats.
Identities = 42/82 (51%), Positives = 46/82 (56%), Gaps = 7/82 (8%)
Query: 19 RDELRRALDVWSKHSKLTFREV------NDDR-ADILIYFEKENHWDGYPFDGPGKILAH 71
R +RRA DVW + LTF EV N R DI I F H D PFDG G LAH
Sbjct: 149 RRAIRRAFDVWQNVTPLTFEEVPYSELENGKRDVDITIIFASGFHGDSSPFDGEGGFLAH 208
Query: 72 AFFPGSGRGGDAHFDIDEDWMV 93
A+FPG G GGD HFD DE W +
Sbjct: 209 AYFPGPGIGGDTHFDSDEPWTL 230
>sp|P50282|MMP9_RAT Matrix metalloproteinase-9 OS=Rattus norvegicus GN=Mmp9 PE=2 SV=1
Length = 708
Score = 79.0 bits (193), Expect = 9e-15, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 45/77 (58%)
Query: 15 RGRLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFF 74
R + D RA VWS + LTF V ADI+I F H DGYPFDG +LAHAF
Sbjct: 135 RDVIDDSFARAFAVWSAVTPLTFTRVYGLEADIVIQFGVAEHGDGYPFDGKDGLLAHAFP 194
Query: 75 PGSGRGGDAHFDIDEDW 91
PG G GDAHFD DE W
Sbjct: 195 PGPGIQGDAHFDDDELW 211
>sp|P28863|MMP3_RABIT Stromelysin-1 OS=Oryctolagus cuniculus GN=MMP3 PE=2 SV=1
Length = 478
Score = 79.0 bits (193), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 52/94 (55%), Gaps = 4/94 (4%)
Query: 2 TLKHHPKRVRHYDRGRLRDE----LRRALDVWSKHSKLTFREVNDDRADILIYFEKENHW 57
T H R+ +Y RD + +AL VW + + LTF + ADI+I F H
Sbjct: 111 TKTHLTYRIVNYTPDLPRDAVDAAIEKALKVWEEVTPLTFSRKYEGEADIMISFGVREHG 170
Query: 58 DGYPFDGPGKILAHAFFPGSGRGGDAHFDIDEDW 91
D PFDGPG +LAHA+ PG G GDAHFD DE W
Sbjct: 171 DFIPFDGPGNVLAHAYAPGPGINGDAHFDDDEQW 204
>sp|O62806|MMP13_RABIT Collagenase 3 OS=Oryctolagus cuniculus GN=MMP13 PE=2 SV=1
Length = 471
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 54/94 (57%), Gaps = 8/94 (8%)
Query: 22 LRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGRGG 81
++A VWS + L F +++ ADI+I F + H D YPFDGP +LAHAF PG GG
Sbjct: 138 FKKAFKVWSDVTPLNFTRIHNGTADIMISFGTKEHGDFYPFDGPSGLLAHAFPPGPNYGG 197
Query: 82 DAHFDIDEDWMVLGVSRSANADEGKSLELANADE 115
DAHFD DE W ++ +G +L L A E
Sbjct: 198 DAHFDDDETW--------TSSSKGYNLFLVAAHE 223
>sp|O35548|MMP16_RAT Matrix metalloproteinase-16 OS=Rattus norvegicus GN=Mmp16 PE=2 SV=1
Length = 607
Score = 78.2 bits (191), Expect = 1e-14, Method: Composition-based stats.
Identities = 42/82 (51%), Positives = 46/82 (56%), Gaps = 7/82 (8%)
Query: 19 RDELRRALDVWSKHSKLTFREV------NDDR-ADILIYFEKENHWDGYPFDGPGKILAH 71
R +RRA DVW + LTF EV N R DI I F H D PFDG G LAH
Sbjct: 149 RRAIRRAFDVWQNVTPLTFEEVPYSELENGKRDVDITIIFASGFHGDRSPFDGEGGFLAH 208
Query: 72 AFFPGSGRGGDAHFDIDEDWMV 93
A+FPG G GGD HFD DE W +
Sbjct: 209 AYFPGPGIGGDTHFDSDEPWTL 230
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.140 0.443
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,599,368
Number of Sequences: 539616
Number of extensions: 2490467
Number of successful extensions: 4313
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 4179
Number of HSP's gapped (non-prelim): 118
length of query: 121
length of database: 191,569,459
effective HSP length: 88
effective length of query: 33
effective length of database: 144,083,251
effective search space: 4754747283
effective search space used: 4754747283
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)