Query psy5960
Match_columns 121
No_of_seqs 114 out of 680
Neff 6.1
Searched_HMMs 46136
Date Fri Aug 16 23:02:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5960.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5960hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1565|consensus 100.0 2.7E-32 5.8E-37 229.6 7.7 106 7-119 116-222 (469)
2 cd04278 ZnMc_MMP Zinc-dependen 99.9 5.8E-23 1.3E-27 149.5 8.6 105 7-118 12-117 (157)
3 PF00413 Peptidase_M10: Matrix 99.8 4.1E-21 8.9E-26 137.5 7.3 104 7-118 12-115 (154)
4 cd04279 ZnMc_MMP_like_1 Zinc-d 99.7 2.4E-16 5.3E-21 114.4 6.9 108 2-119 3-115 (156)
5 smart00235 ZnMc Zinc-dependent 99.5 8.6E-14 1.9E-18 98.9 6.9 76 3-94 10-86 (140)
6 cd04277 ZnMc_serralysin_like Z 99.3 8.3E-12 1.8E-16 92.9 6.0 87 15-118 32-123 (186)
7 cd04268 ZnMc_MMP_like Zinc-dep 99.0 4.7E-11 1E-15 86.3 0.9 91 15-118 13-104 (165)
8 cd00203 ZnMc Zinc-dependent me 98.8 2.3E-08 5.1E-13 72.0 6.6 70 14-91 19-92 (167)
9 cd04327 ZnMc_MMP_like_3 Zinc-d 98.7 3E-08 6.5E-13 74.9 5.4 51 15-67 18-68 (198)
10 cd04276 ZnMc_MMP_like_2 Zinc-d 98.0 3.5E-06 7.7E-11 64.4 2.4 97 16-119 20-127 (197)
11 cd04280 ZnMc_astacin_like Zinc 97.5 0.00018 4E-09 53.7 4.9 40 16-58 14-53 (180)
12 PF12388 Peptidase_M57: Dual-a 96.0 0.017 3.6E-07 44.9 5.6 84 15-119 54-144 (211)
13 PF02031 Peptidase_M7: Strepto 95.1 0.0077 1.7E-07 43.6 0.5 75 16-118 12-87 (132)
14 PF01400 Astacin: Astacin (Pep 93.0 0.16 3.6E-06 38.1 4.1 42 15-58 17-58 (191)
15 cd04281 ZnMc_BMP1_TLD Zinc-dep 90.6 0.7 1.5E-05 35.4 5.3 40 17-58 26-65 (200)
16 cd04283 ZnMc_hatching_enzyme Z 89.6 0.75 1.6E-05 34.8 4.7 44 11-58 12-55 (182)
17 cd04273 ZnMc_ADAMTS_like Zinc- 86.3 2.6 5.6E-05 31.6 5.9 80 22-119 72-151 (207)
18 cd04282 ZnMc_meprin Zinc-depen 78.6 4.4 9.6E-05 31.7 4.6 40 17-59 61-100 (230)
19 KOG3714|consensus 77.8 4.9 0.00011 33.8 5.0 42 15-58 96-137 (411)
20 PF04298 Zn_peptidase_2: Putat 66.0 2.2 4.7E-05 33.5 0.2 70 21-119 20-100 (222)
21 cd04275 ZnMc_pappalysin_like Z 65.1 6 0.00013 30.8 2.5 47 65-119 97-148 (225)
22 cd04267 ZnMc_ADAM_like Zinc-de 62.8 16 0.00035 26.7 4.4 41 22-77 74-114 (192)
23 PF11350 DUF3152: Protein of u 62.5 8.7 0.00019 29.8 3.0 74 16-95 50-128 (203)
24 PF04228 Zn_peptidase: Putativ 41.8 3.8 8.2E-05 33.2 -2.0 14 107-120 169-182 (292)
25 PF12993 DUF3877: Domain of un 37.5 62 0.0013 24.6 4.0 59 17-77 109-169 (175)
26 COG5549 Predicted Zn-dependent 33.7 63 0.0014 25.5 3.6 36 17-53 104-139 (236)
27 PF15127 DUF4565: Protein of u 33.4 34 0.00073 23.3 1.8 17 16-32 60-76 (91)
28 COG2738 Predicted Zn-dependent 31.1 13 0.00028 29.0 -0.5 22 19-40 21-45 (226)
29 COG3824 Predicted Zn-dependent 30.2 15 0.00033 26.5 -0.2 22 14-39 13-34 (136)
30 TIGR02411 leuko_A4_hydro leuko 24.2 31 0.00068 30.4 0.6 15 106-120 277-291 (601)
31 PF06117 DUF957: Enterobacteri 20.4 52 0.0011 21.0 0.8 11 80-90 24-34 (65)
No 1
>KOG1565|consensus
Probab=99.97 E-value=2.7e-32 Score=229.62 Aligned_cols=106 Identities=43% Similarity=0.722 Sum_probs=100.7
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhcCCCceEEEecC-CCccEEEEEeeccCCCCCCCCCCCCceeeccCCCCCCCCccee
Q psy5960 7 PKRVRHYDRGRLRDELRRALDVWSKHSKLTFREVND-DRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGRGGDAHF 85 (121)
Q Consensus 7 ~~~p~~l~~~~vr~~i~~AF~~Ws~vs~l~F~ev~~-~~aDI~I~F~~~~H~d~~~FDG~gg~lAHAf~P~~~~~gdiHf 85 (121)
.+++++|+..+||.++++||++|++|+||+|.|+.. +.|||+|+|..+.|||++||||++|+|||||+|+.+++|++||
T Consensus 116 ~n~~~~l~~~~vr~~~~~Af~~Ws~vtpl~f~e~~~~~~aDi~i~F~~~~h~d~~PFDG~~g~laHAf~Pg~~~~G~~hf 195 (469)
T KOG1565|consen 116 KNYTPYLPQAEVRCAKSEAFKLWSDVTPLTFQEVKEEGEADIRISFFPGDHGDGFPFDGPGGVLAHAFFPGPGIGGDLHF 195 (469)
T ss_pred cccCCCCCHHHHHHHHHHHHhhcccCCCCccccCCCCCCCceeeeeeccCCCCCCcccCCCCceecccCCCCCCCCcccc
Confidence 577899999999999999999999999999999998 8999999999999999999999999999999999888899999
Q ss_pred ccCCCeeecCccCCCCCCCccccceeeecccccc
Q psy5960 86 DIDEDWMVLGVSRSANADEGKSLELANADEGRRH 119 (121)
Q Consensus 86 D~dE~Wt~~~~~~~~~~~~G~sL~~VaaHEig~~ 119 (121)
|+||.|+++ ...|+||+.||+||||.-
T Consensus 196 D~dE~Wt~~-------~~~g~~l~~Va~HEiGH~ 222 (469)
T KOG1565|consen 196 DKDETWTYG-------DSNGVDLFLVAAHEIGHA 222 (469)
T ss_pred Ccccceecc-------CCccchhHHHhhhhcccc
Confidence 999999997 267999999999999964
No 2
>cd04278 ZnMc_MMP Zinc-dependent metalloprotease, matrix metalloproteinase (MMP) sub-family. MMPs are responsible for a great deal of pericellular proteolysis of extracellular matrix and cell surface molecules, playing crucial roles in morphogenesis, cell fate specification, cell migration, tissue repair, tumorigenesis, gain or loss of tissue-specific functions, and apoptosis. In many instances, they are anchored to cell membranes via trans-membrane domains, and their activity is controlled via TIMPs (tissue inhibitors of metalloproteinases).
Probab=99.89 E-value=5.8e-23 Score=149.50 Aligned_cols=105 Identities=49% Similarity=0.791 Sum_probs=92.9
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhcCCCceEEEecCC-CccEEEEEeeccCCCCCCCCCCCCceeeccCCCCCCCCccee
Q psy5960 7 PKRVRHYDRGRLRDELRRALDVWSKHSKLTFREVNDD-RADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGRGGDAHF 85 (121)
Q Consensus 7 ~~~p~~l~~~~vr~~i~~AF~~Ws~vs~l~F~ev~~~-~aDI~I~F~~~~H~d~~~FDG~gg~lAHAf~P~~~~~gdiHf 85 (121)
.+.++.++...++++|++||+.|+++++|+|+|+... .|||+|.|.+..|+|+++|||++|+||||++|. ...|+|+|
T Consensus 12 ~~~~~~~~~~~~~~~i~~A~~~W~~~~~l~F~e~~~~~~adi~I~~~~~~~~~~~~~~~~~g~l~~a~~p~-~~~g~i~~ 90 (157)
T cd04278 12 LNYPPDLPRDDVRRAIARAFRVWSDVTPLTFREVTSGQEADIRISFARGNHGDGYPFDGPGGTLAHAFFPG-GIGGDIHF 90 (157)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHhhcCceeEEcccCCCCCEEEEEeecccCCCCCCCCCccccccccCCC-CcceeEEE
Confidence 3445557789999999999999999999999999875 799999999999999999999999999999996 34689999
Q ss_pred ccCCCeeecCccCCCCCCCccccceeeeccccc
Q psy5960 86 DIDEDWMVLGVSRSANADEGKSLELANADEGRR 118 (121)
Q Consensus 86 D~dE~Wt~~~~~~~~~~~~G~sL~~VaaHEig~ 118 (121)
|.++.|+... ...+.+++.|++||||.
T Consensus 91 ~~~~~~~~~~------~~~~~~~~~~~~HEiGH 117 (157)
T cd04278 91 DDDEQWTLGS------DSGGTDLFSVAAHEIGH 117 (157)
T ss_pred CCCcccccCC------CCccchHHHHHHHHhcc
Confidence 9999999863 24678999999999995
No 3
>PF00413 Peptidase_M10: Matrixin This Prosite motif covers only the active site.; InterPro: IPR001818 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M10 (clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Sequences having this domain are extracellular metalloproteases, such as collagenase and stromelysin, which degrade the extracellular matrix, are known as matrixins. They are zinc-dependent, calcium-activated proteases synthesised as inactive precursors (zymogens), which are proteolytically cleaved to yield the active enzyme [, ]. All matrixins and related proteins possess 2 domains: an N-terminal domain, and a zinc-binding active site domain. The N-terminal domain peptide, cleaved during the activation step, includes a conserved PRCGVPDV octapeptide, known as the cysteine switch, whose Cys residue chelates the active site zinc atom, rendering the enzyme inactive [, ]. The active enzyme degrades components of the extracellular matrix, playing a role in the initial steps of tissue remodelling during morphogenesis, wound healing, angiogenesis and tumour invasion [, ].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0031012 extracellular matrix; PDB: 1Q3A_C 3V96_B 1HV5_D 1CXV_A 1SRP_A 1FBL_A 1ZVX_A 1JH1_A 1I76_A 2OY4_A ....
Probab=99.84 E-value=4.1e-21 Score=137.48 Aligned_cols=104 Identities=39% Similarity=0.703 Sum_probs=92.5
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhcCCCceEEEecCCCccEEEEEeeccCCCCCCCCCCCCceeeccCCCCCCCCcceec
Q psy5960 7 PKRVRHYDRGRLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGRGGDAHFD 86 (121)
Q Consensus 7 ~~~p~~l~~~~vr~~i~~AF~~Ws~vs~l~F~ev~~~~aDI~I~F~~~~H~d~~~FDG~gg~lAHAf~P~~~~~gdiHfD 86 (121)
.+.+++++.+.+++++++||+.|+++++|+|.|+..+++||+|.|....+++.+.|++.++++++++.|.....|+++|+
T Consensus 12 ~~~~~~~~~~~~~~~i~~A~~~W~~~~~~~F~~~~~~~adi~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 91 (154)
T PF00413_consen 12 SNTTPQLSQSEQRDAIRQAFQAWNDVAPLNFTEVSDGNADIRISFGSNNHGDGYSFDGSGGTLAHAYFPNNIVSGDIHFN 91 (154)
T ss_dssp SSBCTTS-HHHHHHHHHHHHHHHHTTSSEEEEEESSSSCSEEEEEESSSSSSSS-CSSSSSESEEEEESSSTTTTEEEEE
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHhcCCceEEeccCCCcceeeeeeccccCcccccccceeeeecccccccccccccccc
Confidence 44457789999999999999999999999999999878999999999999999999999999999999996567899999
Q ss_pred cCCCeeecCccCCCCCCCccccceeeeccccc
Q psy5960 87 IDEDWMVLGVSRSANADEGKSLELANADEGRR 118 (121)
Q Consensus 87 ~dE~Wt~~~~~~~~~~~~G~sL~~VaaHEig~ 118 (121)
.++.|+.. ..+.+|..|++||||.
T Consensus 92 ~~~~~~~~--------~~~~~~~~v~~HEiGH 115 (154)
T PF00413_consen 92 DDESWTID--------DSGNDLQSVAIHEIGH 115 (154)
T ss_dssp TTSHEESS--------SSSEEHHHHHHHHHHH
T ss_pred ccccchhh--------hhhhhhhhhhhhcccc
Confidence 99999876 4567899999999995
No 4
>cd04279 ZnMc_MMP_like_1 Zinc-dependent metalloprotease; MMP_like sub-family 1. A group of bacterial, archaeal, and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=99.66 E-value=2.4e-16 Score=114.37 Aligned_cols=108 Identities=18% Similarity=0.160 Sum_probs=76.9
Q ss_pred cccccCCCCCC---CChHHHHHHHHHHHHHHhcCCCceEEEecCC--CccEEEEEeeccCCCCCCCCCCCCceeeccCCC
Q psy5960 2 TLKHHPKRVRH---YDRGRLRDELRRALDVWSKHSKLTFREVNDD--RADILIYFEKENHWDGYPFDGPGKILAHAFFPG 76 (121)
Q Consensus 2 ~~~~~~~~p~~---l~~~~vr~~i~~AF~~Ws~vs~l~F~ev~~~--~aDI~I~F~~~~H~d~~~FDG~gg~lAHAf~P~ 76 (121)
+|+.+.+-+.. -...++++++++||+.|+++++|+|+++... +|||+|.|.... +|+|.|+++|||++|.
T Consensus 3 ~i~~~i~~~~~~~~~~~~~~~~~v~~A~~~W~~~~~l~F~~~~~~~~~adi~I~f~~~~-----~~~~~g~~~a~a~~p~ 77 (156)
T cd04279 3 PIRVYIDPTPAPPDSRAQSWLQAVKQAAAEWENVGPLKFVYNPEEDNDADIVIFFDRPP-----PVGGAGGGLARAGFPL 77 (156)
T ss_pred CeEEEEcCCCCccccchHHHHHHHHHHHHHHHHhCCeEEEEccCCCCCCcEEEEecCCC-----CCCCCCCceEEecccc
Confidence 34555444433 2567899999999999999999999998763 899999998533 8999999999999998
Q ss_pred CCCCCcceeccCCCeeecCccCCCCCCCccccceeeecccccc
Q psy5960 77 SGRGGDAHFDIDEDWMVLGVSRSANADEGKSLELANADEGRRH 119 (121)
Q Consensus 77 ~~~~gdiHfD~dE~Wt~~~~~~~~~~~~G~sL~~VaaHEig~~ 119 (121)
.+. |+....|........-....+.+|+.||+||||.-
T Consensus 78 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HEiGHa 115 (156)
T cd04279 78 ISD-----GNRKLFNRTDINLGPGQPRGAENLQAIALHELGHA 115 (156)
T ss_pred cCC-----CcccccccceEeecCCcCccchHHHHHHHHHhhhh
Confidence 643 33333332221110000113678999999999963
No 5
>smart00235 ZnMc Zinc-dependent metalloprotease. Neutral zinc metallopeptidases. This alignment represents a subset of known subfamilies. Highest similarity occurs in the HExxH zinc-binding site/ active site.
Probab=99.49 E-value=8.6e-14 Score=98.94 Aligned_cols=76 Identities=30% Similarity=0.439 Sum_probs=61.5
Q ss_pred ccccCCCCCCCChHHHHHHHHHHHHHHhcCCCceEEEecCCCccEEEEEeeccCCCCCCCCCCCCc-eeeccCCCCCCCC
Q psy5960 3 LKHHPKRVRHYDRGRLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKI-LAHAFFPGSGRGG 81 (121)
Q Consensus 3 ~~~~~~~p~~l~~~~vr~~i~~AF~~Ws~vs~l~F~ev~~~~aDI~I~F~~~~H~d~~~FDG~gg~-lAHAf~P~~~~~g 81 (121)
+++..+ ++.++..++++++++||+.|+++++|+|+|+.. ++||+|.|.+.++ +|+ +||+++| +|
T Consensus 10 v~Y~i~-~~~~~~~~~~~~i~~A~~~w~~~t~i~F~e~~~-~ad~~I~f~~~~~---------~g~~~a~~g~~----~g 74 (140)
T smart00235 10 VPYVID-SSSLSPEEVREAIARAFAEWSDVTCLRFVERTS-TADIYISFGKGDG---------SGCTLSHAGRP----GG 74 (140)
T ss_pred EEEEEc-CCCCCHHHHHHHHHHHHHHHhcCCeeEEEECCC-CCCeEEEEEECCC---------CCcceeeeecC----CC
Confidence 334444 567788888999999999999999999999876 8999999998765 234 7999998 36
Q ss_pred cceeccCCCeeec
Q psy5960 82 DAHFDIDEDWMVL 94 (121)
Q Consensus 82 diHfD~dE~Wt~~ 94 (121)
++|++. +.|+..
T Consensus 75 ~~~~~~-~~~~~~ 86 (140)
T smart00235 75 DQHFSL-GNGCIN 86 (140)
T ss_pred ceEEEc-cCCcCC
Confidence 899987 778754
No 6
>cd04277 ZnMc_serralysin_like Zinc-dependent metalloprotease, serralysin_like subfamily. Serralysins and related proteases are important virulence factors in pathogenic bacteria. They may be secreted into the medium via a mechanism found in gram-negative bacteria, that does not require n-terminal signal sequences which are cleaved after the transmembrane translocation. A calcium-binding domain c-terminal to the metalloprotease domain, which contains multiple tandem repeats of a nine-residue motif including the pattern GGxGxD, and which forms a parallel beta roll may be involved in the translocation mechanism and/or substrate binding. Serralysin family members may have a broad spectrum of substrates each, including host immunoglobulins, complement proteins, cell matrix and cytoskeletal proteins, as well as antimicrobial peptides.
Probab=99.27 E-value=8.3e-12 Score=92.86 Aligned_cols=87 Identities=28% Similarity=0.379 Sum_probs=69.0
Q ss_pred hHHHHHHHHHHHHHHhcCCCceEEEecCC-CccEEEEEeeccCCCCCCCCCCCCceeeccCCCCC----CCCcceeccCC
Q psy5960 15 RGRLRDELRRALDVWSKHSKLTFREVNDD-RADILIYFEKENHWDGYPFDGPGKILAHAFFPGSG----RGGDAHFDIDE 89 (121)
Q Consensus 15 ~~~vr~~i~~AF~~Ws~vs~l~F~ev~~~-~aDI~I~F~~~~H~d~~~FDG~gg~lAHAf~P~~~----~~gdiHfD~dE 89 (121)
....++++++||+.|+++++|+|+|+... .+||+|.+..... +++.+.|++|... ..|+|++|.+.
T Consensus 32 ~~~~~~~i~~A~~~w~~~~~l~F~e~~~~~~adI~i~~~~~~~---------~~~~g~a~~p~~~~~~~~~g~i~~~~~~ 102 (186)
T cd04277 32 SAAQQAAARDALEAWEDVADIDFVEVSDNSGADIRFGNSSDPD---------GNTAGYAYYPGSGSGTAYGGDIWFNSSY 102 (186)
T ss_pred CHHHHHHHHHHHHHHHhhcCceeEECCCCCcceEEEEeccCCC---------CCccEEEECCCCCccccccceeEEecCc
Confidence 45778999999999999999999999875 7999999864321 6789999999763 46899999998
Q ss_pred CeeecCccCCCCCCCccccceeeeccccc
Q psy5960 90 DWMVLGVSRSANADEGKSLELANADEGRR 118 (121)
Q Consensus 90 ~Wt~~~~~~~~~~~~G~sL~~VaaHEig~ 118 (121)
.|... ..|-..+.|++||||.
T Consensus 103 ~~~~~--------~~g~~~~~t~~HEiGH 123 (186)
T cd04277 103 DTNSD--------SPGSYGYQTIIHEIGH 123 (186)
T ss_pred ccccC--------CCChhhHHHHHHHHHH
Confidence 87643 2344567777888874
No 7
>cd04268 ZnMc_MMP_like Zinc-dependent metalloprotease, MMP_like subfamily. This group contains matrix metalloproteinases (MMPs), serralysins, and the astacin_like family of proteases.
Probab=99.04 E-value=4.7e-11 Score=86.30 Aligned_cols=91 Identities=20% Similarity=0.194 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHHHHHhcCCCceEEEecCC-CccEEEEEeeccCCCCCCCCCCCCceeeccCCCCCCCCcceeccCCCeee
Q psy5960 15 RGRLRDELRRALDVWSKHSKLTFREVNDD-RADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGRGGDAHFDIDEDWMV 93 (121)
Q Consensus 15 ~~~vr~~i~~AF~~Ws~vs~l~F~ev~~~-~aDI~I~F~~~~H~d~~~FDG~gg~lAHAf~P~~~~~gdiHfD~dE~Wt~ 93 (121)
....|+++++||+.|+++++++|+|+... .+||+|.|.+..+. .+|..+.+.+...| ..|+|+++....|+.
T Consensus 13 ~~~~r~~i~~A~~~W~~~~~i~F~e~~~~~~~di~i~~~~~~~~----~~~~~~~~~~~~~~---~~g~i~~~~~~~~~~ 85 (165)
T cd04268 13 PDKLRAAILDAIEAWNKAFAIGFKNANDVDPADIRYSVIRWIPY----NDGTWSYGPSQVDP---LTGEILLARVYLYSS 85 (165)
T ss_pred CHHHHHHHHHHHHHHHHHhCcCceeccccCccCceEEEEEeecC----CCCccccCCccCCC---CCccEEeeEEEEchh
Confidence 45789999999999999999999999875 79999999864321 11222222222222 347999998776642
Q ss_pred cCccCCCCCCCccccceeeeccccc
Q psy5960 94 LGVSRSANADEGKSLELANADEGRR 118 (121)
Q Consensus 94 ~~~~~~~~~~~G~sL~~VaaHEig~ 118 (121)
.. ...|..++.|++||||.
T Consensus 86 ~~------~~~~~~~~~~~~HEiGH 104 (165)
T cd04268 86 FV------EYSGARLRNTAEHELGH 104 (165)
T ss_pred HH------HHHHHHHHHHHHHHHHH
Confidence 10 12345677888888885
No 8
>cd00203 ZnMc Zinc-dependent metalloprotease. This super-family of metalloproteases contains two major branches, the astacin-like proteases and the adamalysin/reprolysin-like proteases. Both branches have wide phylogenetic distribution, and contain sub-families, which are involved in vertebrate development and disease.
Probab=98.76 E-value=2.3e-08 Score=72.00 Aligned_cols=70 Identities=16% Similarity=0.259 Sum_probs=54.5
Q ss_pred ChHHHHHHHHHHHHHHhcCCCceEEEecCC--CccEEEEEeeccCCCCCCCCCCCCceeeccCCCC--CCCCcceeccCC
Q psy5960 14 DRGRLRDELRRALDVWSKHSKLTFREVNDD--RADILIYFEKENHWDGYPFDGPGKILAHAFFPGS--GRGGDAHFDIDE 89 (121)
Q Consensus 14 ~~~~vr~~i~~AF~~Ws~vs~l~F~ev~~~--~aDI~I~F~~~~H~d~~~FDG~gg~lAHAf~P~~--~~~gdiHfD~dE 89 (121)
....+++++++|++.|+++++++|+++... .+||.+.+...+. .++.+++|++|.. ...|.+.++...
T Consensus 19 ~~~~~~~~v~~a~~~w~~~~~i~f~~~~~~~~~~di~~~~~~~~~--------~~~~~g~a~~~~~c~~~~~~~~~~~~~ 90 (167)
T cd00203 19 LSAQIQSLILIAMQIWRDYLNIRFVLVGVEIDKADIAILVTRQDF--------DGGTGGWAYLGRVCDSLRGVGVLQDNQ 90 (167)
T ss_pred hHHHHHHHHHHHHHHHHhhhCceEEEeccCCCcCcEEEEeccccC--------CCCceEEEecCCccCCCCCcEEEecCC
Confidence 567899999999999999999999999876 8999999975432 4467889998876 234566666544
Q ss_pred Ce
Q psy5960 90 DW 91 (121)
Q Consensus 90 ~W 91 (121)
.|
T Consensus 91 ~~ 92 (167)
T cd00203 91 SG 92 (167)
T ss_pred cc
Confidence 33
No 9
>cd04327 ZnMc_MMP_like_3 Zinc-dependent metalloprotease; MMP_like sub-family 3. A group of bacterial and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=98.69 E-value=3e-08 Score=74.89 Aligned_cols=51 Identities=29% Similarity=0.449 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHHHHHhcCCCceEEEecCCCccEEEEEeeccCCCCCCCCCCCC
Q psy5960 15 RGRLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGK 67 (121)
Q Consensus 15 ~~~vr~~i~~AF~~Ws~vs~l~F~ev~~~~aDI~I~F~~~~H~d~~~FDG~gg 67 (121)
....++.|++||+.|++++.|+|+|+..+++||+|.|..+. || +.+.|..+
T Consensus 18 ~~~~r~~I~~A~~~W~~~t~i~F~~~~~~~adi~I~f~~~~-Gc-~S~vG~~~ 68 (198)
T cd04327 18 DAFLKDKVRAAAREWLPYANLKFKFVTDADADIRISFTPGD-GY-WSYVGTDA 68 (198)
T ss_pred cHHHHHHHHHHHHHHhhhcCeEEEECCCCCCCEEEEEecCC-CC-CCCcCCcc
Confidence 56789999999999999999999999888899999998643 54 34556543
No 10
>cd04276 ZnMc_MMP_like_2 Zinc-dependent metalloprotease; MMP_like sub-family 2. A group of bacterial metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=97.99 E-value=3.5e-06 Score=64.39 Aligned_cols=97 Identities=19% Similarity=0.060 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHhcC------CCceEEEecCC---CccEEEEEeeccCCCCCCCCCCCCceeeccCCCCC--CCCcce
Q psy5960 16 GRLRDELRRALDVWSKH------SKLTFREVNDD---RADILIYFEKENHWDGYPFDGPGKILAHAFFPGSG--RGGDAH 84 (121)
Q Consensus 16 ~~vr~~i~~AF~~Ws~v------s~l~F~ev~~~---~aDI~I~F~~~~H~d~~~FDG~gg~lAHAf~P~~~--~~gdiH 84 (121)
..+|++|++||+.|+++ .+..+.++... ..||++..-+--+.+ ++..+...+..-|..| +.++|.
T Consensus 20 ~~~r~aI~~A~~~Wn~~fe~~Gf~~a~~v~~~p~~~~~~Diry~~ir~~~~~----~~~~~~gps~~dPrTGeIl~a~V~ 95 (197)
T cd04276 20 EKYRDAIREGVLYWNKAFEKAGFKNAIIVKVLPDDADPGDIRYNVIRWIHSP----NGGWAYGPSVVDPRTGEILKADVI 95 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccEEEEeCCCCcCcccceEEEEEEEecC----CCcceecccccCCCCCCeEEEEEE
Confidence 88999999999999998 56666666433 369995554444443 3444555555667665 467888
Q ss_pred eccCCCeeecCccCCCCCCCccccceeeecccccc
Q psy5960 85 FDIDEDWMVLGVSRSANADEGKSLELANADEGRRH 119 (121)
Q Consensus 85 fD~dE~Wt~~~~~~~~~~~~G~sL~~VaaHEig~~ 119 (121)
++........... ....+..|..+++||+|+-
T Consensus 96 l~~~~~~~~~~~~---~~~~~~~~~~~~~he~gh~ 127 (197)
T cd04276 96 LYSGFLRQDQLWY---EDLLAASLRYLLAHEVGHT 127 (197)
T ss_pred eCchhhccchhHH---HHHHHHHHHHHHHHHHHHH
Confidence 8775432211000 0022345777999999963
No 11
>cd04280 ZnMc_astacin_like Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site. Members of this family may have an amino terminal propeptide, which is cleaved to yield the active protease domain, which is consequently always found at the N-terminus in multi-domain architectures. This family includes: astacin, a digestive enzyme from Crayfish; meprin, a multiple domain membrane component that is constructed from a homologous alpha and beta chain, proteins involved in (bone) morphogenesis, tolloid from drosophila, and the sea urchin SPAN protein, which may also play a role in development.
Probab=97.50 E-value=0.00018 Score=53.74 Aligned_cols=40 Identities=15% Similarity=0.025 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHhcCCCceEEEecCCCccEEEEEeeccCCC
Q psy5960 16 GRLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWD 58 (121)
Q Consensus 16 ~~vr~~i~~AF~~Ws~vs~l~F~ev~~~~aDI~I~F~~~~H~d 58 (121)
...++.|++|++.|+++|.|+|+|... ++..|.|..+ .||
T Consensus 14 ~~~~~~I~~A~~~w~~~TcIrF~~~~~--~~~~I~f~~~-~Gc 53 (180)
T cd04280 14 ESDRSLILRAMREIESNTCIRFVPRTT--EKDYIRIVKG-SGC 53 (180)
T ss_pred HHHHHHHHHHHHHHHhCCcceEEECCC--CCcEEEEEcC-CCc
Confidence 468899999999999999999999876 5567777665 455
No 12
>PF12388 Peptidase_M57: Dual-action HEIGH metallo-peptidase; InterPro: IPR024653 This entry represents the metallopeptidases M10, M27 and M57. The catalytic triad for proteases in this entry is HE-H-H, which in many members is in the sequence motif HEIGH [].
Probab=96.04 E-value=0.017 Score=44.88 Aligned_cols=84 Identities=19% Similarity=0.213 Sum_probs=52.4
Q ss_pred hHHHHHHHHHHHHHHhcC-CCceEEEec---CCCccEEEEEeeccCCCCCCCCCCCCceeeccCC-CCCC-CCcceeccC
Q psy5960 15 RGRLRDELRRALDVWSKH-SKLTFREVN---DDRADILIYFEKENHWDGYPFDGPGKILAHAFFP-GSGR-GGDAHFDID 88 (121)
Q Consensus 15 ~~~vr~~i~~AF~~Ws~v-s~l~F~ev~---~~~aDI~I~F~~~~H~d~~~FDG~gg~lAHAf~P-~~~~-~gdiHfD~d 88 (121)
.+..+.++++|.+.|-.+ ..|+|+-.. ...+||.|.=. ..+.+.|.++-|.|| ..|. .+.|.+
T Consensus 54 ~s~~~~al~~AI~~yNalgl~i~F~~t~g~~~~~~di~v~~~--------~~~~~~G~ggsAGFP~s~G~P~~~I~I--- 122 (211)
T PF12388_consen 54 NSAWRTALDEAINNYNALGLSITFTLTFGTNYQNADIIVYSN--------SSNNPSGAGGSAGFPTSNGNPYKFIQI--- 122 (211)
T ss_pred cHHHHHHHHHHHHHHHhhCCceEEEEecCCCcCCCceEEEec--------cCCCCCCcceeccCCCCCCCCCceEEE---
Confidence 367899999999999997 356884221 23567776321 123456678889999 4453 455666
Q ss_pred CCeeecCccCCCCCCCcc-ccceeeecccccc
Q psy5960 89 EDWMVLGVSRSANADEGK-SLELANADEGRRH 119 (121)
Q Consensus 89 E~Wt~~~~~~~~~~~~G~-sL~~VaaHEig~~ 119 (121)
+.+. ..+. -...|.+||||.-
T Consensus 123 --~~~~--------~~~~~~~~hvi~HEiGH~ 144 (211)
T PF12388_consen 123 --YGLS--------NYSVNVIEHVITHEIGHC 144 (211)
T ss_pred --EecC--------CCchhHHHHHHHHHhhhh
Confidence 2221 1121 2345999999964
No 13
>PF02031 Peptidase_M7: Streptomyces extracellular neutral proteinase (M7) family; InterPro: IPR000013 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M7 (snapalysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. With a molecular weight of around 16kDa, Streptomyces extracellular neutral protease is one of the smallest known proteases []; it is capable of hydrolysing milk proteins []. The enzyme is synthesised as a proenzyme with a signal peptide, a propeptide and an active domain that contains the conserved HEXXH motif characteristic of metalloproteases. Although family M7 shows active site sequence similarity to other members, it differs in one major respect: the third zinc ligand appears to be an aspartate residue rather than the usual histidine.; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0005576 extracellular region; PDB: 1C7K_A 1KUH_A.
Probab=95.07 E-value=0.0077 Score=43.57 Aligned_cols=75 Identities=23% Similarity=0.271 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHh-cCCCceEEEecCCCccEEEEEeeccCCCCCCCCCCCCceeeccCCCCCCCCcceeccCCCeeec
Q psy5960 16 GRLRDELRRALDVWS-KHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGRGGDAHFDIDEDWMVL 94 (121)
Q Consensus 16 ~~vr~~i~~AF~~Ws-~vs~l~F~ev~~~~aDI~I~F~~~~H~d~~~FDG~gg~lAHAf~P~~~~~gdiHfD~dE~Wt~~ 94 (121)
.+.+..|.+|-+.|- .|++++|++... ++|+|.-.. .+++..|-..-.+ .|.|-+|- .+
T Consensus 12 ~~f~~~i~~aa~iWN~sV~NV~L~~~s~--a~~~~~~~~----------~~~~sya~~~g~G---~G~I~l~~--~~--- 71 (132)
T PF02031_consen 12 PEFRSAIAQAAQIWNSSVSNVRLVEGSS--ADIRYYEGN----------DPRGSYASTDGLG---SGYIFLDY--QQ--- 71 (132)
T ss_dssp GGGHHHHHHHHHHHHHH-SSEEEEE-SS---SEEEEEE------------TT--EEEE-SSS----EEEEEEH--HH---
T ss_pred chhHHHHHHHHHHHhcccCceEEeecCC--CcEEEEEec----------CCCCcccccCCCC---cEEEEech--HH---
Confidence 467889999999995 589999999755 888876431 2345444433323 36788874 22
Q ss_pred CccCCCCCCCccccceeeeccccc
Q psy5960 95 GVSRSANADEGKSLELANADEGRR 118 (121)
Q Consensus 95 ~~~~~~~~~~G~sL~~VaaHEig~ 118 (121)
.+|++--.|++||+|.
T Consensus 72 --------~qgy~~~RIaaHE~GH 87 (132)
T PF02031_consen 72 --------NQGYNSTRIAAHELGH 87 (132)
T ss_dssp --------HHHS-HHHHHHHHHHH
T ss_pred --------hhCCccceeeeehhcc
Confidence 2467777799999985
No 14
>PF01400 Astacin: Astacin (Peptidase family M12A) This Prosite motif covers only the active site.; InterPro: IPR001506 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M12, subfamily M12A (astacin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The astacin () family of metalloendopeptidases encompasses a range of proteins found in hydra to humans, in mature and developmental systems []. Their functions include activation of growth factors, degradation of polypeptides, and processing of extracellular proteins []. The proteins are synthesised with N-terminal signal and pro-enzyme sequences, and many contain multiple domains C-terminal to the protease domain. They are either secreted from cells, or are associated with the plasma membrane. The astacin molecule adopts a kidney shape, with a deep active-site cleft between its N- and C-terminal domains []. The zinc ion, which lies at the bottom of the cleft, exhibits a unique penta-coordinated mode of binding, involving 3 histidine residues, a tyrosine and a water molecule (which is also bound to the carboxylate side chain of Glu93) []. The N-terminal domain comprises 2 alpha-helices and a 5-stranded beta-sheet. The overall topology of this domain is shared by the archetypal zinc-endopeptidase thermolysin. Astacin protease domains also share common features with serralysins, matrix metalloendopeptidases, and snake venom proteases; they cleave peptide bonds in polypeptides such as insulin B chain and bradykinin, and in proteins such as casein and gelatin; and they have arylamidase activity [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3LQB_A 3EDH_A 3EDG_A 3EDI_A 1IAE_A 1IAB_A 1IAA_A 1AST_A 1IAC_A 1QJJ_A ....
Probab=92.96 E-value=0.16 Score=38.11 Aligned_cols=42 Identities=26% Similarity=0.452 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHHHhcCCCceEEEecCCCccEEEEEeeccCCC
Q psy5960 15 RGRLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWD 58 (121)
Q Consensus 15 ~~~vr~~i~~AF~~Ws~vs~l~F~ev~~~~aDI~I~F~~~~H~d 58 (121)
....++.|++|++.|++.+.++|+++. ......|.|.. ..||
T Consensus 17 ~~~~~~~I~~Am~~~e~~TcI~F~~~~-~~~~~~i~~~~-~~gC 58 (191)
T PF01400_consen 17 SSSQRQRIRKAMDEWEKNTCIRFVERT-ENEDDYISFSN-GSGC 58 (191)
T ss_dssp -HHHHHHHHHHHHHHHHHSSEEEEE-S-SSSSSEEEEES-SSSE
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEECC-CCCceEEEeec-Cccc
Confidence 356778999999999999999999998 45555666753 3344
No 15
>cd04281 ZnMc_BMP1_TLD Zinc-dependent metalloprotease; BMP1/TLD-like subfamily. BMP1 (Bone morphogenetic protein 1) and TLD (tolloid)-like metalloproteases play vital roles in extracellular matrix formation, by cleaving precursor proteins such as enzymes, structural proteins, and proteins involved in the mineralization of the extracellular matrix. The drosophila protein tolloid and its Xenopus homologue xolloid cleave and inactivate Sog and chordin, respectively, which are inhibitors of Dpp (the Drosophila decapentaplegic gene product) and its homologue BMP4, involved in dorso-ventral patterning.
Probab=90.56 E-value=0.7 Score=35.39 Aligned_cols=40 Identities=20% Similarity=0.297 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEecCCCccEEEEEeeccCCC
Q psy5960 17 RLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWD 58 (121)
Q Consensus 17 ~vr~~i~~AF~~Ws~vs~l~F~ev~~~~aDI~I~F~~~~H~d 58 (121)
.-+++|++|++.|++.|-++|++-... .-.|.|..+..||
T Consensus 26 ~~~~~I~~Am~~~~~~TCirF~~r~~~--~~yi~f~~~~~GC 65 (200)
T cd04281 26 SQRAMFKQAMRHWENFTCVTFVERTPE--ENYIVFTYRPCGC 65 (200)
T ss_pred HHHHHHHHHHHHHHhCCceEEEECCCC--CCEEEEEECCCCe
Confidence 446899999999999999999986653 3456665555565
No 16
>cd04283 ZnMc_hatching_enzyme Zinc-dependent metalloprotease, hatching enzyme-like subfamily. Hatching enzymes are secreted by teleost embryos to digest the egg envelope or chorion. In some teleosts, the hatching enzyme may be a system consisting of two evolutionary related metalloproteases, high choriolytic enzyme and low choriolytic enzyme (HCE and LCE), which may have different substrate specificities and cooperatively digest the chorion.
Probab=89.58 E-value=0.75 Score=34.76 Aligned_cols=44 Identities=14% Similarity=0.212 Sum_probs=30.5
Q ss_pred CCCChHHHHHHHHHHHHHHhcCCCceEEEecCCCccEEEEEeeccCCC
Q psy5960 11 RHYDRGRLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWD 58 (121)
Q Consensus 11 ~~l~~~~vr~~i~~AF~~Ws~vs~l~F~ev~~~~aDI~I~F~~~~H~d 58 (121)
+.++. .-++.|++|++.|++.|-++|++-.....- |.|.. ..||
T Consensus 12 ~~~~~-~~~~~I~~A~~~~~~~TCirF~~~~~~~~y--i~~~~-~~gC 55 (182)
T cd04283 12 PQYSE-NERAVIEKAMQEFETLTCVRFVPRTTERDY--LNIES-RSGC 55 (182)
T ss_pred CCCCH-HHHHHHHHHHHHHHhCCceeeEECCCCCcE--EEEEc-CCCc
Confidence 34444 457899999999999999999886544333 44543 2344
No 17
>cd04273 ZnMc_ADAMTS_like Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that combine ADAM-like metalloproteinases with thrombospondin type-1 repeats. ADAMTS (a disintegrin and metalloproteinase with thrombospondin motifs) proteinases are inhibited by TIMPs (tissue inhibitors of metalloproteinases), and they play roles in coagulation, angiogenesis, development and progression of arthritis. They hydrolyze the von Willebrand factor precursor and various components of the extracellular matrix.
Probab=86.34 E-value=2.6 Score=31.65 Aligned_cols=80 Identities=16% Similarity=0.174 Sum_probs=44.8
Q ss_pred HHHHHHHHhcCCCceEEEecCCCccEEEEEeeccCCCCCCCCCCCCceeeccCCCCCCCCcceeccCCCeeecCccCCCC
Q psy5960 22 LRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGRGGDAHFDIDEDWMVLGVSRSAN 101 (121)
Q Consensus 22 i~~AF~~Ws~vs~l~F~ev~~~~aDI~I~F~~~~H~d~~~FDG~gg~lAHAf~P~~~~~gdiHfD~dE~Wt~~~~~~~~~ 101 (121)
.-+.|..|..-.... ..-.....|+.+.|-..+.... ++++++++.|+.-+--. ......+.
T Consensus 72 ~L~~F~~w~~~~~~~-~~~~~~~~D~a~llt~~d~~~~---~~~~~~~G~A~~ggiC~-------~~~s~~i~------- 133 (207)
T cd04273 72 SLKSFCRWQKKLNPP-NDSDPEHHDHAILLTRQDICRS---NGNCDTLGLAPVGGMCS-------PSRSCSIN------- 133 (207)
T ss_pred HHHHHHHHHHHcCCc-ccccccccceEEEEeeeccccc---CCCCCceEEeccccCCC-------CCcceEEE-------
Confidence 347899998743321 1112245788888866443322 67899999998643210 01111222
Q ss_pred CCCccccceeeecccccc
Q psy5960 102 ADEGKSLELANADEGRRH 119 (121)
Q Consensus 102 ~~~G~sL~~VaaHEig~~ 119 (121)
...+...-.|+|||+|+-
T Consensus 134 ~~~~~~~a~~~aHElGH~ 151 (207)
T cd04273 134 EDTGLSSAFTIAHELGHV 151 (207)
T ss_pred cCCCceeEEeeeeechhh
Confidence 123445567888888863
No 18
>cd04282 ZnMc_meprin Zinc-dependent metalloprotease, meprin_like subfamily. Meprins are membrane-bound or secreted extracellular proteases, which cleave a variety of targets, including peptides such as parathyroid hormone, gastrin, and cholecystokinin, cytokines such as osteopontin, and proteins such as collagen IV, fibronectin, casein and gelatin. Meprins may also be able to release proteins from the cell surface. Closely related meprin alpha- and beta-subunits form homo- and hetero-oligomers; these complexes are found on epithelial cells of the intestine, for example, and are also expressed in certain cancer cells.
Probab=78.56 E-value=4.4 Score=31.75 Aligned_cols=40 Identities=15% Similarity=0.232 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEecCCCccEEEEEeeccCCCC
Q psy5960 17 RLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDG 59 (121)
Q Consensus 17 ~vr~~i~~AF~~Ws~vs~l~F~ev~~~~aDI~I~F~~~~H~d~ 59 (121)
.-++.|++|++.|++.|-++|++..... -.|.|.++ .||.
T Consensus 61 ~~~~~I~~Am~~~~~~TCirF~~rt~e~--~yi~i~~~-~GC~ 100 (230)
T cd04282 61 NAKGVILKAFEMYRLKSCVDFKPYEGES--NYIFFFKG-SGCW 100 (230)
T ss_pred HHHHHHHHHHHHHHhCCCeeEEECCCCC--cEEEEEcC-CCee
Confidence 5578999999999999999999876443 25566543 4653
No 19
>KOG3714|consensus
Probab=77.82 E-value=4.9 Score=33.85 Aligned_cols=42 Identities=24% Similarity=0.263 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHHHHHhcCCCceEEEecCCCccEEEEEeeccCCC
Q psy5960 15 RGRLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWD 58 (121)
Q Consensus 15 ~~~vr~~i~~AF~~Ws~vs~l~F~ev~~~~aDI~I~F~~~~H~d 58 (121)
....|.+|++|++.|++.|=++|+|......+..+-+..+ ||
T Consensus 96 ~~~~r~~i~~A~~~~~~~TCi~F~~~~~~~~~~~~~~~~~--gC 137 (411)
T KOG3714|consen 96 TSSQRALIRQAMREIENHTCIRFVERTTPDKDYLIVFTGG--GC 137 (411)
T ss_pred CHHHHHHHHHHHHHHhhCcceEEEeCCCCCcceEEEeCCC--cc
Confidence 4588999999999999999999999875555666655433 55
No 20
>PF04298 Zn_peptidase_2: Putative neutral zinc metallopeptidase; InterPro: IPR007395 Members of this family of bacterial proteins are described as hypothetical proteins or zinc-dependent proteases. The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.
Probab=65.99 E-value=2.2 Score=33.48 Aligned_cols=70 Identities=17% Similarity=0.192 Sum_probs=37.4
Q ss_pred HHHHHHHHHhcCCC---ceEEEec------CCCccEEEEEeeccCCCCCCCCCCCCceeeccCCCCCCCCcceeccCCCe
Q psy5960 21 ELRRALDVWSKHSK---LTFREVN------DDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGRGGDAHFDIDEDW 91 (121)
Q Consensus 21 ~i~~AF~~Ws~vs~---l~F~ev~------~~~aDI~I~F~~~~H~d~~~FDG~gg~lAHAf~P~~~~~gdiHfD~dE~W 91 (121)
=++..|++++++.+ ++=.|+. .+-.|++|.-..|.= .=|||+.++.
T Consensus 20 ~vk~~~~kYs~v~~~~g~TGae~Ar~iL~~~gl~~V~Ve~~~G~L-------------------------tDHYdP~~k~ 74 (222)
T PF04298_consen 20 WVKSTFKKYSQVRSSSGMTGAEVARHILDRNGLSDVRVERVPGEL-------------------------TDHYDPRNKV 74 (222)
T ss_pred HHHHHHHhhCcCCCCCCCCHHHHHHHHHHHCCCCCeeEEEeCCCC-------------------------CCCcCCCCCE
Confidence 35677777888742 3333432 234577776543211 2356665554
Q ss_pred eecCccCCCCCCCccccc--eeeecccccc
Q psy5960 92 MVLGVSRSANADEGKSLE--LANADEGRRH 119 (121)
Q Consensus 92 t~~~~~~~~~~~~G~sL~--~VaaHEig~~ 119 (121)
-.-... -..|.|+- .|||||.|.-
T Consensus 75 vrLS~~----vy~~~SiaAvaVAAHEvGHA 100 (222)
T PF04298_consen 75 VRLSED----VYNGRSIAAVAVAAHEVGHA 100 (222)
T ss_pred EEeCCc----cCCCCCHHHHHHHHHHHhHH
Confidence 322111 13455655 4999999963
No 21
>cd04275 ZnMc_pappalysin_like Zinc-dependent metalloprotease, pappalysin_like subfamily. The pregnancy-associated plasma protein A (PAPP-A or pappalysin-1) cleaves insulin-like growth factor-binding proteins 4 and 5, thereby promoting cell growth by releasing bound growth factor. This model includes pappalysins and related metalloprotease domains from all three kingdoms of life. The three-dimensional structure of an archaeal representative, ulilysin, has been solved.
Probab=65.15 E-value=6 Score=30.75 Aligned_cols=47 Identities=19% Similarity=0.115 Sum_probs=27.6
Q ss_pred CCCceeeccCCCCCCCC-----cceeccCCCeeecCccCCCCCCCccccceeeecccccc
Q psy5960 65 PGKILAHAFFPGSGRGG-----DAHFDIDEDWMVLGVSRSANADEGKSLELANADEGRRH 119 (121)
Q Consensus 65 ~gg~lAHAf~P~~~~~g-----diHfD~dE~Wt~~~~~~~~~~~~G~sL~~VaaHEig~~ 119 (121)
.+++|+.|.+|...... -+-.+.. . ++.. ....+++..+++||+|..
T Consensus 97 ~~~~lG~a~fP~~~~~~~~~~dGvvi~~~-~--~~~~-----~~~~~n~g~t~~HEvGH~ 148 (225)
T cd04275 97 GGGLLGYATFPDSLVSLAFITDGVVINPS-S--LPGG-----SAAPYNLGDTATHEVGHW 148 (225)
T ss_pred CCCcCEEEECCCcccCCccccceEEEecc-c--cCCC-----CcccccccceeEEeccce
Confidence 36889999999874211 1222211 1 1110 123578899999999964
No 22
>cd04267 ZnMc_ADAM_like Zinc-dependent metalloprotease, ADAM_like or reprolysin_like subgroup. The adamalysin_like or ADAM family of metalloproteases contains proteolytic domains from snake venoms, proteases from the mammalian reproductive tract, and the tumor necrosis factor alpha convertase, TACE. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions.
Probab=62.85 E-value=16 Score=26.69 Aligned_cols=41 Identities=20% Similarity=0.361 Sum_probs=26.7
Q ss_pred HHHHHHHHhcCCCceEEEecCCCccEEEEEeeccCCCCCCCCCCCCceeeccCCCC
Q psy5960 22 LRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGS 77 (121)
Q Consensus 22 i~~AF~~Ws~vs~l~F~ev~~~~aDI~I~F~~~~H~d~~~FDG~gg~lAHAf~P~~ 77 (121)
.-++|..|..-. ..+.|+.+.+-..+ | +.+++++.|++|.-
T Consensus 74 ~l~~f~~~~~~~--------~~~~d~~~l~t~~~------~-~~~~~~G~a~~~~~ 114 (192)
T cd04267 74 TLNSFSFWRAEG--------PIRHDNAVLLTAQD------F-IEGDILGLAYVGSM 114 (192)
T ss_pred HHHHHHHHHhcC--------CCCCceEEEEeeec------c-CCCCeeeeecccCC
Confidence 345789997754 34567777775321 2 35688899988763
No 23
>PF11350 DUF3152: Protein of unknown function (DUF3152); InterPro: IPR022603 This entry represents Actinobacteria proteins of unknown function. Some are annotated as membrane proteins, however this cannot be confirmed.
Probab=62.48 E-value=8.7 Score=29.77 Aligned_cols=74 Identities=18% Similarity=0.379 Sum_probs=47.1
Q ss_pred HHHHHHHHHHH---HHHhcCCCceEEEecCCCccEEEEEeeccCCCCC--CCCCCCCceeeccCCCCCCCCcceeccCCC
Q psy5960 16 GRLRDELRRAL---DVWSKHSKLTFREVNDDRADILIYFEKENHWDGY--PFDGPGKILAHAFFPGSGRGGDAHFDIDED 90 (121)
Q Consensus 16 ~~vr~~i~~AF---~~Ws~vs~l~F~ev~~~~aDI~I~F~~~~H~d~~--~FDG~gg~lAHAf~P~~~~~gdiHfD~dE~ 90 (121)
+.+.+.+.+-+ +-|...-.+.|+.|..+.+|++|..++...-+.. +.+-.+- +. .+.|. ++++-++.+ .
T Consensus 50 ~~fA~~V~~tL~DpRgW~~~g~~~F~rV~~~~~Df~I~Lasp~T~~~lC~g~~~~~e-~S-C~~~~---g~~VvIN~~-R 123 (203)
T PF11350_consen 50 DAFAAMVDATLADPRGWTADGRVRFQRVDSGAPDFRISLASPGTTDRLCAGLDTSGE-TS-CRNPA---GGRVVINLA-R 123 (203)
T ss_pred HHHHHHHHHHhcCCCCCCcCCCEEEEECCCCCCCEEEEECCcchhhhhccCcCcCce-eE-eecCC---CCeEEEehH-H
Confidence 34444444443 5699999999999998889999999987765533 2333222 22 22222 346777774 7
Q ss_pred eeecC
Q psy5960 91 WMVLG 95 (121)
Q Consensus 91 Wt~~~ 95 (121)
|..+.
T Consensus 124 Wv~Ga 128 (203)
T PF11350_consen 124 WVRGA 128 (203)
T ss_pred hhccC
Confidence 87663
No 24
>PF04228 Zn_peptidase: Putative neutral zinc metallopeptidase; InterPro: IPR007343 Members of this family of bacterial proteins are described as hypothetical proteins or zinc metallopeptidases. The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.
Probab=41.85 E-value=3.8 Score=33.22 Aligned_cols=14 Identities=29% Similarity=0.192 Sum_probs=11.4
Q ss_pred ccceeeeccccccC
Q psy5960 107 SLELANADEGRRHV 120 (121)
Q Consensus 107 sL~~VaaHEig~~~ 120 (121)
....|.|||+|.||
T Consensus 169 a~ayVlAHEyGHHV 182 (292)
T PF04228_consen 169 AQAYVLAHEYGHHV 182 (292)
T ss_pred HHHHHHHHHHHHHH
Confidence 34568999999997
No 25
>PF12993 DUF3877: Domain of unknown function, E. rectale Gene description (DUF3877); InterPro: IPR024539 This entry represents proteins of unknown function found primarily in Firmicutes. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=37.51 E-value=62 Score=24.57 Aligned_cols=59 Identities=25% Similarity=0.426 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEecCCCccEEEEEeeccCCC-CCCCCC-CCCceeeccCCCC
Q psy5960 17 RLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWD-GYPFDG-PGKILAHAFFPGS 77 (121)
Q Consensus 17 ~vr~~i~~AF~~Ws~vs~l~F~ev~~~~aDI~I~F~~~~H~d-~~~FDG-~gg~lAHAf~P~~ 77 (121)
.....|.+-|..||+ .....++.+++=|..|.|..+.--+ .|.|-- -+.++=|-|.|.+
T Consensus 109 cT~e~I~~~F~~ys~--~~~~e~~~~~eFD~~i~Fed~~~D~YyYC~k~Eg~HiiYHRFlpED 169 (175)
T PF12993_consen 109 CTLEDILELFHKYSD--NVHCEEMDNGEFDYLIYFEDGNPDPYYYCFKDEGCHIIYHRFLPED 169 (175)
T ss_pred cCHHHHHHHHHHhcC--CeEEEeecCCCCCEEEEecCCCCCceEEEEEecCCcEEEeeCCHhh
Confidence 344556677778998 7778888888999999998543222 234322 2567789998875
No 26
>COG5549 Predicted Zn-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=33.70 E-value=63 Score=25.54 Aligned_cols=36 Identities=28% Similarity=0.323 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEecCCCccEEEEEee
Q psy5960 17 RLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEK 53 (121)
Q Consensus 17 ~vr~~i~~AF~~Ws~vs~l~F~ev~~~~aDI~I~F~~ 53 (121)
.-..++..|.+-|.+.=||..+| ...+|||+|....
T Consensus 104 ~wq~a~~tava~wa~~fpl~ive-~~eeaDItie~~n 139 (236)
T COG5549 104 RWQGAYLTAVAGWAKTFPLIIVE-RFEEADITIEVGN 139 (236)
T ss_pred hHHHHHHHHHHHHHHhCCceeee-cceeeeEEEEecC
Confidence 44678888999999986666655 2457999998753
No 27
>PF15127 DUF4565: Protein of unknown function (DUF4565)
Probab=33.37 E-value=34 Score=23.33 Aligned_cols=17 Identities=24% Similarity=0.456 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHhcC
Q psy5960 16 GRLRDELRRALDVWSKH 32 (121)
Q Consensus 16 ~~vr~~i~~AF~~Ws~v 32 (121)
..-+.++++|+++|+..
T Consensus 60 rLSqEIl~dAlqQWA~~ 76 (91)
T PF15127_consen 60 RLSQEILSDALQQWAEN 76 (91)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34466889999999984
No 28
>COG2738 Predicted Zn-dependent protease [General function prediction only]
Probab=31.11 E-value=13 Score=29.03 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHhcCCC---ceEEEe
Q psy5960 19 RDELRRALDVWSKHSK---LTFREV 40 (121)
Q Consensus 19 r~~i~~AF~~Ws~vs~---l~F~ev 40 (121)
+.-++.+|++||+|.. ++=.||
T Consensus 21 Q~kvks~y~KySkV~~s~g~TGaev 45 (226)
T COG2738 21 QSKVKSTYKKYSKVRASSGLTGAEV 45 (226)
T ss_pred HHHHHHHHHHHhhccCcCCCcHHHH
Confidence 3457889999999843 444444
No 29
>COG3824 Predicted Zn-dependent protease [General function prediction only]
Probab=30.23 E-value=15 Score=26.53 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=15.1
Q ss_pred ChHHHHHHHHHHHHHHhcCCCceEEE
Q psy5960 14 DRGRLRDELRRALDVWSKHSKLTFRE 39 (121)
Q Consensus 14 ~~~~vr~~i~~AF~~Ws~vs~l~F~e 39 (121)
|...+..+...||.. .|-.|+.
T Consensus 13 s~~~fe~La~~A~d~----lP~efr~ 34 (136)
T COG3824 13 SLERFEELASDALDH----LPQEFRD 34 (136)
T ss_pred CHHHHHHHHHHHHHh----CcHHHHH
Confidence 567888888888864 4555543
No 30
>TIGR02411 leuko_A4_hydro leukotriene A-4 hydrolase/aminopeptidase. Members of this family represent a distinctive subset within the zinc metallopeptidase family M1 (pfam01433). The majority of the members of pfam01433 are aminopeptidases, but the sequences in this family for which the function is known are leukotriene A-4 hydrolase. A dual epoxide hydrolase and aminopeptidase activity at the same active site is indicated. The physiological substrate for aminopeptidase activity is not known.
Probab=24.24 E-value=31 Score=30.41 Aligned_cols=15 Identities=20% Similarity=-0.164 Sum_probs=12.0
Q ss_pred cccceeeeccccccC
Q psy5960 106 KSLELANADEGRRHV 120 (121)
Q Consensus 106 ~sL~~VaaHEig~~~ 120 (121)
.++..|+|||+...|
T Consensus 277 ~s~~~viaHElAHqW 291 (601)
T TIGR02411 277 RSNVDVIAHELAHSW 291 (601)
T ss_pred hhhhhhHHHHHHhhc
Confidence 355679999998877
No 31
>PF06117 DUF957: Enterobacterial protein of unknown function (DUF957); InterPro: IPR009301 This family consists of several hypothetical proteins from Escherichia coli, Salmonella typhi, Shigella flexneri and Proteus vulgaris. The function of this family is unknown.
Probab=20.40 E-value=52 Score=21.05 Aligned_cols=11 Identities=55% Similarity=0.703 Sum_probs=8.8
Q ss_pred CCcceeccCCC
Q psy5960 80 GGDAHFDIDED 90 (121)
Q Consensus 80 ~gdiHfD~dE~ 90 (121)
+.+|+||.||.
T Consensus 24 es~iiFDNded 34 (65)
T PF06117_consen 24 ESDIIFDNDED 34 (65)
T ss_pred CCCeeecCCCc
Confidence 45899999874
Done!