Query psy5960
Match_columns 121
No_of_seqs 114 out of 680
Neff 6.1
Searched_HMMs 29240
Date Fri Aug 16 23:02:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5960.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5960hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ma2_D Matrix metalloproteinas 100.0 2E-38 6.9E-43 237.2 7.4 108 7-119 18-133 (181)
2 830c_A MMP-13, MMP-13; matrix 100.0 2.1E-36 7.2E-41 223.7 9.2 109 3-119 15-124 (168)
3 1eak_A 72 kDa type IV collagen 100.0 1.9E-35 6.4E-40 244.7 9.3 89 7-95 98-186 (421)
4 1ck7_A Protein (gelatinase A); 100.0 7.9E-34 2.7E-38 244.5 9.3 89 7-95 100-188 (631)
5 2ovx_A Matrix metalloproteinas 100.0 3.9E-33 1.3E-37 203.6 9.3 109 3-118 12-121 (159)
6 1l6j_A Matrix metalloproteinas 100.0 4.6E-32 1.6E-36 224.7 10.7 90 7-96 107-196 (425)
7 3ayu_A 72 kDa type IV collagen 100.0 3.1E-31 1E-35 195.2 9.1 110 2-118 14-124 (167)
8 1y93_A Macrophage metalloelast 100.0 3.8E-31 1.3E-35 193.2 9.1 108 3-118 10-118 (159)
9 2y6d_A Matrilysin; hydrolase; 100.0 4.5E-31 1.6E-35 195.4 9.2 109 3-118 16-125 (174)
10 1hv5_A Stromelysin 3; inhibiti 100.0 3.9E-31 1.3E-35 193.6 8.4 109 3-118 14-123 (165)
11 1rm8_A MMP-16, matrix metallop 100.0 7.8E-31 2.7E-35 192.5 9.4 111 3-118 9-127 (169)
12 2xs4_A Karilysin protease; hyd 100.0 6.4E-31 2.2E-35 192.5 7.1 108 3-118 13-125 (167)
13 1i76_A MMP-8;, neutrophil coll 100.0 1.6E-30 5.5E-35 190.4 8.9 108 3-118 14-122 (163)
14 1cge_A Fibroblast collagenase; 100.0 1.5E-29 5.3E-34 185.8 9.0 108 3-118 13-121 (168)
15 1slm_A Stromelysin-1; hydrolas 100.0 1.5E-29 5.2E-34 197.4 9.1 104 7-118 102-205 (255)
16 1hy7_A Stromelysin-1, MMP-3; m 100.0 2.2E-29 7.5E-34 185.5 9.0 104 7-118 20-123 (173)
17 3ba0_A Macrophage metalloelast 100.0 7.2E-29 2.5E-33 201.4 9.2 109 2-118 8-117 (365)
18 2jsd_A Matrix metalloproteinas 100.0 1.9E-28 6.5E-33 177.6 8.1 104 7-118 15-118 (160)
19 1su3_A Interstitial collagenas 99.9 6.8E-28 2.3E-32 200.5 8.7 109 3-119 95-204 (450)
20 1g9k_A Serralysin; beta jelly 99.8 3.6E-20 1.2E-24 154.6 5.2 88 16-118 83-173 (463)
21 1k7i_A PROC, secreted protease 99.7 7.7E-19 2.6E-23 147.0 6.1 95 12-118 96-192 (479)
22 1kap_P Alkaline protease; calc 99.7 1.1E-18 3.8E-23 146.2 6.4 90 13-118 97-189 (479)
23 1sat_A Serratia protease; para 99.7 7.5E-18 2.6E-22 140.7 3.1 99 12-118 80-180 (471)
24 1c7k_A NCNP, zinc endoprotease 99.7 1.1E-17 3.7E-22 119.7 1.5 76 15-118 11-87 (132)
25 3edh_A Bone morphogenetic prot 97.5 0.00021 7.1E-09 53.5 6.0 50 12-65 22-71 (201)
26 1l6j_A Matrix metalloproteinas 97.2 3.3E-05 1.1E-09 64.0 -1.3 31 81-118 356-386 (425)
27 3lq0_A Proastacin; metallopept 96.7 0.0017 5.9E-08 49.6 4.7 42 16-59 58-99 (235)
28 3lqb_A Hatching enzyme, LOC792 94.3 0.047 1.6E-06 40.6 4.2 43 12-58 29-71 (199)
29 1eak_A 72 kDa type IV collagen 78.4 0.23 7.7E-06 41.0 -1.6 54 58-118 314-376 (421)
30 4gwm_A Meprin A subunit beta; 48.2 18 0.00063 30.8 4.2 40 16-58 63-102 (592)
31 1ck7_A Protein (gelatinase A); 47.6 2.1 7E-05 36.9 -1.7 53 59-118 317-378 (631)
32 2cki_A Ulilysin; metalloprotea 47.1 11 0.00038 28.7 2.5 50 63-119 122-173 (262)
33 1bxn_I Rubisco, protein (ribul 41.3 31 0.001 24.2 3.8 28 1-28 1-29 (139)
34 1bwv_S Rubisco, protein (ribul 39.3 31 0.001 24.2 3.6 28 1-28 1-29 (138)
35 1v5s_A MAP/microtubule affinit 31.1 47 0.0016 22.7 3.4 26 2-28 27-52 (126)
36 3o2i_A Uncharacterized protein 22.5 57 0.002 21.8 2.5 27 7-34 45-71 (125)
37 4dxt_A SUN domain-containing p 22.1 72 0.0025 23.1 3.2 22 11-32 2-23 (198)
No 1
>3ma2_D Matrix metalloproteinase-14; protein - protein complex, cleavage on PAIR of basic residue disulfide bond, membrane, metal-binding; 2.05A {Homo sapiens} SCOP: d.92.1.11 PDB: 1bqq_M 1buv_M
Probab=100.00 E-value=2e-38 Score=237.16 Aligned_cols=108 Identities=37% Similarity=0.636 Sum_probs=99.8
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhcCCCceEEEecC--------CCccEEEEEeeccCCCCCCCCCCCCceeeccCCCCC
Q psy5960 7 PKRVRHYDRGRLRDELRRALDVWSKHSKLTFREVND--------DRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSG 78 (121)
Q Consensus 7 ~~~p~~l~~~~vr~~i~~AF~~Ws~vs~l~F~ev~~--------~~aDI~I~F~~~~H~d~~~FDG~gg~lAHAf~P~~~ 78 (121)
.+||++|+..+++++|++||++|++|++|+|+||.. ..|||+|.|++++|||++||||+||+|||||+|+.+
T Consensus 18 ~n~t~~l~~~~v~~ai~~Af~~Ws~vt~L~F~ev~~~~~~~~~~~~ADI~I~F~~~~hgd~~~FDG~gg~lAhAf~P~~~ 97 (181)
T 3ma2_D 18 QNYTPKVGEYATYEAIRKAFRVWESATPLRFREVPYAYIREGHEKQADIMIFFAEGFHGDSTPFDGEGGFLAHAYFPGPN 97 (181)
T ss_dssp CCCCTTTCHHHHHHHHHHHHHHHHHHSSCEEEECCHHHHHTTSSCCCSEEEEEECSCCSSSSCCCSSSSEEEEECCSCST
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHhcCCcceEEcccccccccccccCcEEEEeecccCCCCCcccCCCCeeeeccCCCCC
Confidence 688999999999999999999999999999999964 489999999999999999999999999999999998
Q ss_pred CCCcceeccCCCeeecCccCCCCCCCccccceeeecccccc
Q psy5960 79 RGGDAHFDIDEDWMVLGVSRSANADEGKSLELANADEGRRH 119 (121)
Q Consensus 79 ~~gdiHfD~dE~Wt~~~~~~~~~~~~G~sL~~VaaHEig~~ 119 (121)
++|++|||++|.|+++.. ...|.+|+.||+||||..
T Consensus 98 ~~Gd~hfd~~e~wt~~~~-----~~~g~~l~~v~~hE~Gh~ 133 (181)
T 3ma2_D 98 IGGDTHFDSAEPWTVRNE-----DLNGNDIFLVAVHELGHA 133 (181)
T ss_dssp TTTCEEEETTSCEECTTS-----CTTSEEHHHHHHHHHHHH
T ss_pred CCCceEecCccccccCCC-----ccccceeeeeehhhcccc
Confidence 899999999999998742 237999999999999953
No 2
>830c_A MMP-13, MMP-13; matrix metalloprotease; HET: RS1; 1.60A {Homo sapiens} SCOP: d.92.1.11 PDB: 456c_A* 1you_A* 4a7b_A* 3tvc_A* 1eub_A* 1xuc_A* 1xud_A* 1xur_A* 2yig_A* 3elm_A* 3i7g_A* 3i7i_A* 3zxh_A* 2ow9_A* 2ozr_A* 3kek_A* 3kej_A* 3kec_A* 2d1n_A* 1fls_A* ...
Probab=100.00 E-value=2.1e-36 Score=223.68 Aligned_cols=109 Identities=39% Similarity=0.657 Sum_probs=101.4
Q ss_pred cccc-CCCCCCCChHHHHHHHHHHHHHHhcCCCceEEEecCCCccEEEEEeeccCCCCCCCCCCCCceeeccCCCCCCCC
Q psy5960 3 LKHH-PKRVRHYDRGRLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGRGG 81 (121)
Q Consensus 3 ~~~~-~~~p~~l~~~~vr~~i~~AF~~Ws~vs~l~F~ev~~~~aDI~I~F~~~~H~d~~~FDG~gg~lAHAf~P~~~~~g 81 (121)
|.+. .+||++|+..+++++|++||++|+++++|+|+|+..+.|||+|.|.+++|||++||||+||+|||||+|+.+++|
T Consensus 15 LTY~I~n~t~~l~~~~v~~ai~~A~~~Ws~vt~L~F~ev~~~~AdI~I~F~~~~hgd~~~fdg~gg~lAhAf~P~~~~~G 94 (168)
T 830c_A 15 LTYRIVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTRLHDGIADIMISFGIKEHGDFYPFDGPSGLLAHAFPPGPNYGG 94 (168)
T ss_dssp EEEEECSCCTTSCHHHHHHHHHHHHHHHHTTSSCEEEEESSSCCSEEEEEECSSCSSSCCCCSSSSCCEEECCSSSTTTT
T ss_pred EEEEEecCCCCCCHHHHHHHHHHHHHHHHhccCcceeeccCcccccceeecccccCCcccccCCCceeeeccCCCCCCCC
Confidence 4444 578999999999999999999999999999999998899999999999999999999999999999999998889
Q ss_pred cceeccCCCeeecCccCCCCCCCccccceeeecccccc
Q psy5960 82 DAHFDIDEDWMVLGVSRSANADEGKSLELANADEGRRH 119 (121)
Q Consensus 82 diHfD~dE~Wt~~~~~~~~~~~~G~sL~~VaaHEig~~ 119 (121)
++|||++|.|+.+ ..|.+|+.||+||||..
T Consensus 95 ~~hfd~~e~w~~~--------~~g~~l~~v~~hE~Gh~ 124 (168)
T 830c_A 95 DAHFDDDETWTSS--------SKGYNLFLVAAHEFGHS 124 (168)
T ss_dssp CEEEETTSCEESS--------SSSEEHHHHHHHHHHHH
T ss_pred ceEeccccccccc--------cCCcchhhhhhhhhcch
Confidence 9999999999874 47899999999999963
No 3
>1eak_A 72 kDa type IV collagenase; hydrolase-hydrolase inhibitor complex, hydrolyse, matrix metalloproteinase, gelatinase A, hydrolase- hydrolase inhib complex; 2.66A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1ks0_A 1cxw_A
Probab=100.00 E-value=1.9e-35 Score=244.73 Aligned_cols=89 Identities=45% Similarity=0.792 Sum_probs=86.1
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhcCCCceEEEecCCCccEEEEEeeccCCCCCCCCCCCCceeeccCCCCCCCCcceec
Q psy5960 7 PKRVRHYDRGRLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGRGGDAHFD 86 (121)
Q Consensus 7 ~~~p~~l~~~~vr~~i~~AF~~Ws~vs~l~F~ev~~~~aDI~I~F~~~~H~d~~~FDG~gg~lAHAf~P~~~~~gdiHfD 86 (121)
.++|++|+.++||++|++||++|++|+||+|+||..+.|||+|+|.+++|||++||||+||+|||||+|+.+++|++|||
T Consensus 98 ~~~~~~l~~~~v~~~i~~AF~~Ws~vtpLtF~ev~~~~ADI~I~F~~g~HgD~~pFDG~gg~LAHAf~P~~g~~Gd~HFD 177 (421)
T 1eak_A 98 IGYTPDLDPETVDDAFARAFQVWSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGTGVGGDSHFD 177 (421)
T ss_dssp CCCCTTSCHHHHHHHHHHHHHHHHTSSSCEEEECCSSCCSEEEEEECSSCSSSCCCCSSSSBCEEECCSSSTTTTCEEEE
T ss_pred ecCCCCCCHHHHHHHHHHHHHHHhcccCceeEEcCCCCCCEEEEEecCCCCCccccCCCCCccccccCCCCCCCCceeee
Confidence 68899999999999999999999999999999998889999999999999999999999999999999998889999999
Q ss_pred cCCCeeecC
Q psy5960 87 IDEDWMVLG 95 (121)
Q Consensus 87 ~dE~Wt~~~ 95 (121)
+||.|+++.
T Consensus 178 ~dE~Wt~~~ 186 (421)
T 1eak_A 178 DDELWTLGE 186 (421)
T ss_dssp TTSCEESSS
T ss_pred eccceeccC
Confidence 999999875
No 4
>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length, metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1gxd_A
Probab=100.00 E-value=7.9e-34 Score=244.50 Aligned_cols=89 Identities=45% Similarity=0.792 Sum_probs=86.0
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhcCCCceEEEecCCCccEEEEEeeccCCCCCCCCCCCCceeeccCCCCCCCCcceec
Q psy5960 7 PKRVRHYDRGRLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGRGGDAHFD 86 (121)
Q Consensus 7 ~~~p~~l~~~~vr~~i~~AF~~Ws~vs~l~F~ev~~~~aDI~I~F~~~~H~d~~~FDG~gg~lAHAf~P~~~~~gdiHfD 86 (121)
.+++++|+.++|+++|++||++|++|+||+|+||..++|||+|+|++++|||++||||+||+|||||+|+.+++|++|||
T Consensus 100 ~~~~~~l~~~~v~~~~~~Af~~Ws~vt~L~F~ev~~~~ADI~I~F~~~~Hgd~~pFDG~gg~LAHAf~P~~g~~Gd~HfD 179 (631)
T 1ck7_A 100 IGYTPDLDPETVDDAFARAFQVWSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGTGVGGDSHFD 179 (631)
T ss_dssp CCCCTTSCHHHHHHHHHHHHHHHHTTSSCEEEECSSSCCSEEEEEECSSCSSSCCCCSSSSBCEEECCSSSTTTTCEEEE
T ss_pred ecCCCCcCHHHHHHHHHHHHHHHhhccceeEEEccCCCCCEEEEEecCCCCCcccccCCCccccccccCCcccCCccccc
Confidence 68899999999999999999999999999999999889999999999999999999999999999999998889999999
Q ss_pred cCCCeeecC
Q psy5960 87 IDEDWMVLG 95 (121)
Q Consensus 87 ~dE~Wt~~~ 95 (121)
+||.|+++.
T Consensus 180 ~dE~Wt~~~ 188 (631)
T 1ck7_A 180 DDELWTLGE 188 (631)
T ss_dssp TTSCEESSS
T ss_pred cccccccCC
Confidence 999999875
No 5
>2ovx_A Matrix metalloproteinase-9 (EC 3.4.24.35) (MMP-9) type IV collagenase) (92 kDa gelatinase)...; S1-prime pocket, hydrolase-hydrola inhibitor complex; HET: 4MR; 2.00A {Homo sapiens} SCOP: d.92.1.11 PDB: 2ovz_A* 2ow0_A* 2ow1_A* 2ow2_A* 1gkd_A* 1gkc_A*
Probab=100.00 E-value=3.9e-33 Score=203.56 Aligned_cols=109 Identities=41% Similarity=0.635 Sum_probs=100.4
Q ss_pred cccc-CCCCCCCChHHHHHHHHHHHHHHhcCCCceEEEecCCCccEEEEEeeccCCCCCCCCCCCCceeeccCCCCCCCC
Q psy5960 3 LKHH-PKRVRHYDRGRLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGRGG 81 (121)
Q Consensus 3 ~~~~-~~~p~~l~~~~vr~~i~~AF~~Ws~vs~l~F~ev~~~~aDI~I~F~~~~H~d~~~FDG~gg~lAHAf~P~~~~~g 81 (121)
|.+. .++|++|+.+++++++++||+.|+++++|+|+|+..+.|||+|.|.+++|||++||||++|+|||||+|+.+..|
T Consensus 12 lty~i~~~~~~l~~~~~~~~i~~A~~~W~~~~~l~F~e~~~~~adI~I~f~~~~~gd~~~fdG~~g~la~a~~P~~~~~g 91 (159)
T 2ovx_A 12 ITYWIQNYSEDLPRAVIDDAFARAFALWSAVTPLTFTRVYSRDADIVIQFGVAEHGDGYPFDGKDGLLAHAFPPGPGIQG 91 (159)
T ss_dssp EEEEECCCCTTSCHHHHHHHHHHHHHHHHTSSSCEEEECSSTTSSEEEEEECSSCSSSCCCCSSSSCCEEECCSSSTTTT
T ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHHHHHccCCeeEEEecCCCCceEEEEeeccCCCCccccCCCCeEEEEEcCCCCccc
Confidence 4554 567888999999999999999999999999999987799999999999999999999999999999999988889
Q ss_pred cceeccCCCeeecCccCCCCCCCccccceeeeccccc
Q psy5960 82 DAHFDIDEDWMVLGVSRSANADEGKSLELANADEGRR 118 (121)
Q Consensus 82 diHfD~dE~Wt~~~~~~~~~~~~G~sL~~VaaHEig~ 118 (121)
++|||++|.|+++. ..|.+|+.||+||||.
T Consensus 92 ~~~fd~~e~w~~~~-------~~g~~~~~va~HEiGH 121 (159)
T 2ovx_A 92 DAHFDDDELWSLGK-------GQGYSLFLVAAHQFGH 121 (159)
T ss_dssp CEEEETTSCEECSS-------SSSEEHHHHHHHHHHH
T ss_pred eEEEccccceecCC-------Ccccchhhhhhhhhhh
Confidence 99999999999873 4689999999999995
No 6
>1l6j_A Matrix metalloproteinase-9; twisted beta sheet flanked by helices, hydrolase; 2.50A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2
Probab=99.97 E-value=4.6e-32 Score=224.72 Aligned_cols=90 Identities=44% Similarity=0.715 Sum_probs=86.8
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhcCCCceEEEecCCCccEEEEEeeccCCCCCCCCCCCCceeeccCCCCCCCCcceec
Q psy5960 7 PKRVRHYDRGRLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGRGGDAHFD 86 (121)
Q Consensus 7 ~~~p~~l~~~~vr~~i~~AF~~Ws~vs~l~F~ev~~~~aDI~I~F~~~~H~d~~~FDG~gg~lAHAf~P~~~~~gdiHfD 86 (121)
.+||++|+.++||++|++||++|++|+||+|+||..+.|||+|.|.+++|||++||||+||+|||||+|+.+++|++|||
T Consensus 107 ~~~t~~l~~~~v~~~i~~Af~~Ws~vt~L~F~ev~~~~ADI~I~F~~g~HgD~~pFDG~gg~LAHAf~P~~g~~Gd~HFD 186 (425)
T 1l6j_A 107 QNYSEDLPRAVIDDAFARAFALWSAVTPLTFTRVYSRDADIVIQFGVAEHGDGYPFDGKDGLLAHAFPPGPGIQGDAHFD 186 (425)
T ss_dssp CCCCTTSCHHHHHHHHHHHHHHHHHTSSCEEEEECSTTSSEEEEEECSSCSSSCCCCSTTSBCEEECCSSSTTTTCEEEE
T ss_pred ecCCCCCCHHHHHHHHHHHHHHHhhcccceEEEccCCCCCEEEEEeeccCCCcccccCCCcccccccCCCCCCCCceeee
Confidence 68899999999999999999999999999999999889999999999999999999999999999999999899999999
Q ss_pred cCCCeeecCc
Q psy5960 87 IDEDWMVLGV 96 (121)
Q Consensus 87 ~dE~Wt~~~~ 96 (121)
+||.|+++..
T Consensus 187 ~dE~Wt~~~~ 196 (425)
T 1l6j_A 187 DDELWSLGKG 196 (425)
T ss_dssp TTSCEESSSS
T ss_pred eccccccCCC
Confidence 9999999863
No 7
>3ayu_A 72 kDa type IV collagenase; protease, hydrolase-hydrolase inhibitor complex; 2.00A {Homo sapiens} PDB: 1qib_A 1hov_A*
Probab=99.97 E-value=3.1e-31 Score=195.19 Aligned_cols=110 Identities=41% Similarity=0.662 Sum_probs=100.3
Q ss_pred ccccc-CCCCCCCChHHHHHHHHHHHHHHhcCCCceEEEecCCCccEEEEEeeccCCCCCCCCCCCCceeeccCCCCCCC
Q psy5960 2 TLKHH-PKRVRHYDRGRLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGRG 80 (121)
Q Consensus 2 ~~~~~-~~~p~~l~~~~vr~~i~~AF~~Ws~vs~l~F~ev~~~~aDI~I~F~~~~H~d~~~FDG~gg~lAHAf~P~~~~~ 80 (121)
+|.+. .+++++++...+++++++||+.|+++++|+|+|+..+.|||+|.|.+++|||++||||++|+|||||+|..+..
T Consensus 14 ~lty~i~~~~~~l~~~~~~~~i~~A~~~W~~vt~l~F~ev~~~~adI~I~f~~~~~gd~~~fdG~~g~la~a~~P~~~~~ 93 (167)
T 3ayu_A 14 QITYRIIGYTPDLDPETVDDAFARAFQVWSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGTGVG 93 (167)
T ss_dssp EEEEEECCCCTTSCHHHHHHHHHHHHHHHHTSSSCEEEECSSSCCSEEEEEECSSCSSSCCCCSSSSCCEEEECSSSTTT
T ss_pred eEEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCeeEEEecCCCceEEEEEeccCCCCcccccCCCceeEEEECCCCCcC
Confidence 34555 56778899999999999999999999999999998779999999999999999999999999999999998778
Q ss_pred CcceeccCCCeeecCccCCCCCCCccccceeeeccccc
Q psy5960 81 GDAHFDIDEDWMVLGVSRSANADEGKSLELANADEGRR 118 (121)
Q Consensus 81 gdiHfD~dE~Wt~~~~~~~~~~~~G~sL~~VaaHEig~ 118 (121)
|++|||++|.|+++. ..|.+|+.|++||||.
T Consensus 94 G~~~fd~~e~w~~~~-------~~g~~~~~~~~HE~gH 124 (167)
T 3ayu_A 94 GDSHFDDDELWTLGK-------GVGYSLFLVAAHAFGH 124 (167)
T ss_dssp TCEEEETTSCEESSC-------SSSEEHHHHHHHHHHH
T ss_pred CceEEcceeeeecCC-------CcCccceeehhhhhHH
Confidence 999999999999873 4789999999999985
No 8
>1y93_A Macrophage metalloelastase; matrix metalloproteinase, MMP12, complex (elastase inhibitor), acetohydroxamic acid, hydrola; 1.03A {Homo sapiens} SCOP: d.92.1.11 PDB: 1rmz_A 1ycm_A* 1z3j_A* 2hu6_A* 2oxu_A 2oxw_A 2oxz_A 3lik_A* 3lil_A* 3lir_A* 3ljg_A* 1os9_A 1os2_A 3f17_A* 3ehy_A* 3ehx_A* 3f15_A* 3f16_A* 3f18_A* 3f19_A* ...
Probab=99.97 E-value=3.8e-31 Score=193.20 Aligned_cols=108 Identities=41% Similarity=0.656 Sum_probs=99.1
Q ss_pred cccc-CCCCCCCChHHHHHHHHHHHHHHhcCCCceEEEecCCCccEEEEEeeccCCCCCCCCCCCCceeeccCCCCCCCC
Q psy5960 3 LKHH-PKRVRHYDRGRLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGRGG 81 (121)
Q Consensus 3 ~~~~-~~~p~~l~~~~vr~~i~~AF~~Ws~vs~l~F~ev~~~~aDI~I~F~~~~H~d~~~FDG~gg~lAHAf~P~~~~~g 81 (121)
|.+. .+++++++..++++++++||+.|+++++|+|+|+..+.|||+|.|.+++|||++||||++|+|||||+|..+..|
T Consensus 10 ltY~i~~~~~~l~~~~~~~~i~~A~~~W~~~t~l~F~e~~~~~adI~I~f~~~~~gd~~~fdG~~g~la~a~~P~~~~~g 89 (159)
T 1y93_A 10 ITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDDHAFDGKGGILAHAFGPGSGIGG 89 (159)
T ss_dssp EEEEECCCCTTSCHHHHHHHHHHHHHHHHTTSSCEEEECSSSCCSEEEEEECSCCSSSCCCCSSSSCCEEECCSCSTTTT
T ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCceEEEecCCCccEEEEEEecccCCcccccCCCCeEEEEecCCCCcCc
Confidence 4444 567888999999999999999999999999999988889999999999999999999999999999999987789
Q ss_pred cceeccCCCeeecCccCCCCCCCccccceeeeccccc
Q psy5960 82 DAHFDIDEDWMVLGVSRSANADEGKSLELANADEGRR 118 (121)
Q Consensus 82 diHfD~dE~Wt~~~~~~~~~~~~G~sL~~VaaHEig~ 118 (121)
++|||++|.|+++ ..|.+|+.|++||||.
T Consensus 90 ~~~fd~~~~w~~~--------~~g~~~~~~~~HE~GH 118 (159)
T 1y93_A 90 DAHFDEDEFWTTH--------SGGTNLFLTAVHEIGH 118 (159)
T ss_dssp CEEEETTSCEESS--------SSSEEHHHHHHHHHHH
T ss_pred eEEECCccccccC--------cccchhhhhhhhhhhh
Confidence 9999999999976 3588999999999995
No 9
>2y6d_A Matrilysin; hydrolase; HET: TQJ; 1.60A {Homo sapiens} PDB: 2ddy_A* 1mmq_A* 1mmp_A* 1mmr_A* 2y6c_A*
Probab=99.97 E-value=4.5e-31 Score=195.39 Aligned_cols=109 Identities=40% Similarity=0.642 Sum_probs=100.2
Q ss_pred cccc-CCCCCCCChHHHHHHHHHHHHHHhcCCCceEEEecCCCccEEEEEeeccCCCCCCCCCCCCceeeccCCCCCCCC
Q psy5960 3 LKHH-PKRVRHYDRGRLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGRGG 81 (121)
Q Consensus 3 ~~~~-~~~p~~l~~~~vr~~i~~AF~~Ws~vs~l~F~ev~~~~aDI~I~F~~~~H~d~~~FDG~gg~lAHAf~P~~~~~g 81 (121)
|.+. .+++++++..++++++++||+.|+++++|+|+|+..+.|||+|.|.++.|||++||||++|+|||||+|..+++|
T Consensus 16 ltY~i~~~~~~l~~~~~~~~i~~A~~~W~~vt~l~F~ev~~~~adI~I~f~~~~hgd~~~fdG~~g~la~a~~P~~~~~g 95 (174)
T 2y6d_A 16 VTYRIVSYTRDLPHITVDRLVSKALNMWGKEIPLHFRKVVWGTADIMIGFARGAHGDSYPFDGPGNTLAHAFAPGTGLGG 95 (174)
T ss_dssp EEEEECCCCTTSCHHHHHHHHHHHHHHHHTTSSCEEEECCSSCCSEEEEEECSCCSSSCCCCSSSSCCEEECCSSSTTTT
T ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHHHHHhccCeeEEEecCCCccEEEEEeecCCCCccceeCCCCeeEEeecCCCCccc
Confidence 4444 568889999999999999999999999999999987889999999999999999999999999999999988889
Q ss_pred cceeccCCCeeecCccCCCCCCCccccceeeeccccc
Q psy5960 82 DAHFDIDEDWMVLGVSRSANADEGKSLELANADEGRR 118 (121)
Q Consensus 82 diHfD~dE~Wt~~~~~~~~~~~~G~sL~~VaaHEig~ 118 (121)
++|||++|.|+.+. ..|.+|+.|++||||.
T Consensus 96 ~i~fd~~e~w~~~~-------~~g~~~~~~~~HE~gH 125 (174)
T 2y6d_A 96 DAHFDEDERWTDGS-------SLGINFLYAATHELGH 125 (174)
T ss_dssp CEEEETTSCEESSS-------SSSEEHHHHHHHHHHH
T ss_pred eEEeccccccccCC-------CCCceeeehhhHHhHh
Confidence 99999999999762 4689999999999985
No 10
>1hv5_A Stromelysin 3; inhibition, phosphinic inhibitor, hydrolase; HET: CPS RXP; 2.60A {Mus musculus} SCOP: d.92.1.11
Probab=99.97 E-value=3.9e-31 Score=193.62 Aligned_cols=109 Identities=44% Similarity=0.714 Sum_probs=99.7
Q ss_pred cccc-CCCCCCCChHHHHHHHHHHHHHHhcCCCceEEEecCCCccEEEEEeeccCCCCCCCCCCCCceeeccCCCCCCCC
Q psy5960 3 LKHH-PKRVRHYDRGRLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGRGG 81 (121)
Q Consensus 3 ~~~~-~~~p~~l~~~~vr~~i~~AF~~Ws~vs~l~F~ev~~~~aDI~I~F~~~~H~d~~~FDG~gg~lAHAf~P~~~~~g 81 (121)
|.+. .++|++++..++++++++||+.|+++++|+|+|+..+.|||+|.|.++.|||++||||++|+|||||+|+.+..|
T Consensus 14 ltY~i~~~~~~~~~~~~~~~i~~A~~~W~~~t~l~F~e~~~~~adI~i~f~~~~~gd~~~fdg~~g~la~A~~P~~~~~g 93 (165)
T 1hv5_A 14 LTYRILRFPWQLVREQVRQTVAEALQVWSEVTPLTFTEVHEGRADIMIDFARYWHGDNLPFDGPGGILAHAFFPKTHREG 93 (165)
T ss_dssp EEEEECSCCTTSCHHHHHHHHHHHHHHHHTTSSCEEEECSSSBCSEEEEEECSCSSSSCCCCSSSSCCEEEECCTTSSSE
T ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHHHHHcccCeeEEEecCCCccEEEEEeecccCCCCcccCCcceEEEeeCCCCCcCc
Confidence 4444 567889999999999999999999999999999987789999999999999999999999999999999987779
Q ss_pred cceeccCCCeeecCccCCCCCCCccccceeeeccccc
Q psy5960 82 DAHFDIDEDWMVLGVSRSANADEGKSLELANADEGRR 118 (121)
Q Consensus 82 diHfD~dE~Wt~~~~~~~~~~~~G~sL~~VaaHEig~ 118 (121)
++|||.+|.|+++. ..|.+|+.||+||||.
T Consensus 94 ~~~~d~~~~w~~~~-------~~g~~~~~v~~HEiGH 123 (165)
T 1hv5_A 94 DVHFDYDETWTIGD-------NQGTDLLQVAAHEFGH 123 (165)
T ss_dssp EEEEETTSCEESSC-------SSSEEHHHHHHHHHHH
T ss_pred cEEEccccceecCC-------ccCchhhhhHHHHhHh
Confidence 99999999999873 4688999999999995
No 11
>1rm8_A MMP-16, matrix metalloproteinase-16, MT3-MMP; membrane type - matrix metalloproteinase, batimastat, hydroxamate inhibitor, protease, hydrolase; HET: BAT; 1.80A {Homo sapiens} SCOP: d.92.1.11
Probab=99.97 E-value=7.8e-31 Score=192.50 Aligned_cols=111 Identities=40% Similarity=0.663 Sum_probs=100.0
Q ss_pred cccc-CCCCCCCChHHHHHHHHHHHHHHhcCCCceEEEec-------CCCccEEEEEeeccCCCCCCCCCCCCceeeccC
Q psy5960 3 LKHH-PKRVRHYDRGRLRDELRRALDVWSKHSKLTFREVN-------DDRADILIYFEKENHWDGYPFDGPGKILAHAFF 74 (121)
Q Consensus 3 ~~~~-~~~p~~l~~~~vr~~i~~AF~~Ws~vs~l~F~ev~-------~~~aDI~I~F~~~~H~d~~~FDG~gg~lAHAf~ 74 (121)
|.+. .+++++++...+++++++||+.|+++++|+|+|+. ...|||+|.|.++.|||++||||++|+|||||+
T Consensus 9 lTY~i~~~~~~~~~~~~~~~i~~A~~~W~~v~~l~F~ev~~~~~~~~~~~adI~i~f~~~~~gd~~~fdG~~g~la~a~~ 88 (169)
T 1rm8_A 9 ITYSIKNVTPKVGDPETRKAIRRAFDVWQNVTPLTFEEVPYSELENGKRDVDITIIFASGFHGDSSPFDGEGGFLAHAYF 88 (169)
T ss_dssp EEEEECCCCTTTCHHHHHHHHHHHHHHHHTTSSCEEEECCTTCCCSSSCCCSEEEEEESSCCSSSCCCCSSSSCCEEECC
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHHhcCCceeEEeccccccCCCCCCCEEEEEeeccccccceecCCCCEEEEEEe
Confidence 4444 56778888999999999999999999999999997 468999999999999999999999999999999
Q ss_pred CCCCCCCcceeccCCCeeecCccCCCCCCCccccceeeeccccc
Q psy5960 75 PGSGRGGDAHFDIDEDWMVLGVSRSANADEGKSLELANADEGRR 118 (121)
Q Consensus 75 P~~~~~gdiHfD~dE~Wt~~~~~~~~~~~~G~sL~~VaaHEig~ 118 (121)
|+.+++|++|||.+|.|+++.. ...|.+|+.|++||||.
T Consensus 89 P~~g~~g~~~fd~~e~w~~~~~-----~~~g~~~~~~~~he~gh 127 (169)
T 1rm8_A 89 PGPGIGGDTHFDSDEPWTLGNP-----NHDGNDLFLVAVHELGH 127 (169)
T ss_dssp SCSTTTTCEEEETTSCEESSCC-----SSSSEEHHHHHHHHHHH
T ss_pred ecCCccceEEEcCCCcceecCC-----CCccceeeeehhhhhhh
Confidence 9988889999999999998642 25789999999999995
No 12
>2xs4_A Karilysin protease; hydrolase, bacterial MMP, virulence factor, metalloprotease, dependent, peptidase; 1.70A {Tannerella forsythia} PDB: 2xs3_A
Probab=99.97 E-value=6.4e-31 Score=192.45 Aligned_cols=108 Identities=41% Similarity=0.644 Sum_probs=96.9
Q ss_pred cccc-CCCCCCCChHHHHHHHHHHHHHHhcCCCceEEEec-CCCccEEEEEeeccCCCCCCCCCCCCceeeccCCCC---
Q psy5960 3 LKHH-PKRVRHYDRGRLRDELRRALDVWSKHSKLTFREVN-DDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGS--- 77 (121)
Q Consensus 3 ~~~~-~~~p~~l~~~~vr~~i~~AF~~Ws~vs~l~F~ev~-~~~aDI~I~F~~~~H~d~~~FDG~gg~lAHAf~P~~--- 77 (121)
|.+. .++|++|+...+++++++||+.|+++++|+|+|+. .+.|||+|.|.+++|||++||||++|+|||||+|..
T Consensus 13 lty~i~~~~~~l~~~~~~~~i~~A~~~W~~~~~l~F~~v~~~~~adI~I~f~~~~~gd~~~~dG~~g~la~a~~P~~~~~ 92 (167)
T 2xs4_A 13 LKYYIYNSSSHLTTTERENAIRSAFALWSDKSTLSFIQVYNPNQADIKIKWEKGNHGDGYPFDGNTGILAHAFYPPPAGG 92 (167)
T ss_dssp EEEEECCCCCSSCHHHHHHHHHHHHHHHHHTSSCEEEECSCGGGCSEEEEEECSCCSSSCCTTSSSCCSEEECCSTTTTG
T ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHHHHhccCCceEEEeCCCCCCcEEEEEeccCCCCCcceecCCCeEEEEECCCCccC
Confidence 4444 57788899999999999999999999999999995 468999999999999999999999999999999975
Q ss_pred CCCCcceeccCCCeeecCccCCCCCCCccccceeeeccccc
Q psy5960 78 GRGGDAHFDIDEDWMVLGVSRSANADEGKSLELANADEGRR 118 (121)
Q Consensus 78 ~~~gdiHfD~dE~Wt~~~~~~~~~~~~G~sL~~VaaHEig~ 118 (121)
..+|++|||++|.|+++ ..|.+|+.||+||||.
T Consensus 93 ~~~g~~~fd~~e~w~~~--------~~g~~~~~v~~HEiGH 125 (167)
T 2xs4_A 93 NYAGHLHFDDDENWSIN--------GSGIDLITVAAHEIGH 125 (167)
T ss_dssp GGTTEEEEETTSCEESS--------SSSEEHHHHHHHHHHH
T ss_pred cccceEEECCccccccC--------CCccchhhhHHHHHHH
Confidence 25689999999999976 2688999999999995
No 13
>1i76_A MMP-8;, neutrophil collagenase; hydrolase, complex (metalloprotease/inhibitor); HET: BSI; 1.20A {Homo sapiens} SCOP: d.92.1.11 PDB: 1i73_A* 1jao_A* 1jap_A 1jaq_A* 1jj9_A* 1mmb_A* 1zp5_A* 1zs0_A* 1zvx_A* 3dng_A* 3dpe_A* 3dpf_A* 1kbc_A* 1jan_A* 1bzs_A* 1mnc_A* 2oy2_A 1a86_A* 1jh1_A* 1a85_A ...
Probab=99.97 E-value=1.6e-30 Score=190.39 Aligned_cols=108 Identities=38% Similarity=0.637 Sum_probs=98.6
Q ss_pred cccc-CCCCCCCChHHHHHHHHHHHHHHhcCCCceEEEecCCCccEEEEEeeccCCCCCCCCCCCCceeeccCCCCCCCC
Q psy5960 3 LKHH-PKRVRHYDRGRLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGRGG 81 (121)
Q Consensus 3 ~~~~-~~~p~~l~~~~vr~~i~~AF~~Ws~vs~l~F~ev~~~~aDI~I~F~~~~H~d~~~FDG~gg~lAHAf~P~~~~~g 81 (121)
|.+. .+++++++..++++++++||+.|+++++|+|+|+..+.|||+|.|.+++|||++||||++|+|||||+|..+.+|
T Consensus 14 ltY~i~~~~~~~~~~~~~~~i~~A~~~W~~~t~l~F~e~~~~~adI~I~f~~~~~g~~~~fdG~~g~la~a~~p~~~~~g 93 (163)
T 1i76_A 14 LTYRIRNYTPQLSEAEVERAIKDAFELWSVASPLIFTRISQGEADINIAFYQRDHGDNSPFDGPNGILAHAFQPGQGIGG 93 (163)
T ss_dssp EEEEECCCCTTSCHHHHHHHHHHHHHHHHTTSSCEEEECSSSCCSEEEEEECSCCSSSCCCCSSSSCCEEECCSSSTTTT
T ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCcceEEecccccceEEEEeecCCCCcccccCCCCeEEEEecCCCCccc
Confidence 4444 567778899999999999999999999999999988889999999999999999999999999999999988789
Q ss_pred cceeccCCCeeecCccCCCCCCCccccceeeeccccc
Q psy5960 82 DAHFDIDEDWMVLGVSRSANADEGKSLELANADEGRR 118 (121)
Q Consensus 82 diHfD~dE~Wt~~~~~~~~~~~~G~sL~~VaaHEig~ 118 (121)
++|||++|.|+++ ..|.+|+.|++||||.
T Consensus 94 ~~~~d~~~~w~~~--------~~g~~~~~v~~HE~GH 122 (163)
T 1i76_A 94 DAHFDAEETWTNT--------SANYNLFLVAAHEFGH 122 (163)
T ss_dssp CEEEETTSCCBSS--------SSSCBHHHHHHHHHHH
T ss_pred eEEeCCccccccC--------cccchhhhhhHHHhhh
Confidence 9999999999875 3678999999999995
No 14
>1cge_A Fibroblast collagenase; hydrolase (metalloprotease); 1.90A {Homo sapiens} SCOP: d.92.1.11 PDB: 2j0t_A 1ayk_A 1hfc_A* 2ayk_A 2tcl_A* 3ayk_A* 4ayk_A* 1cgl_A* 1cgf_A 966c_A* 3shi_A
Probab=99.96 E-value=1.5e-29 Score=185.79 Aligned_cols=108 Identities=40% Similarity=0.672 Sum_probs=98.3
Q ss_pred cccc-CCCCCCCChHHHHHHHHHHHHHHhcCCCceEEEecCCCccEEEEEeeccCCCCCCCCCCCCceeeccCCCCCCCC
Q psy5960 3 LKHH-PKRVRHYDRGRLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGRGG 81 (121)
Q Consensus 3 ~~~~-~~~p~~l~~~~vr~~i~~AF~~Ws~vs~l~F~ev~~~~aDI~I~F~~~~H~d~~~FDG~gg~lAHAf~P~~~~~g 81 (121)
|.+. .+++++++..+++++|++||+.|+++++|+|+|+..+.|||+|.|.+++|||+++|||++|+|||||+|..+.+|
T Consensus 13 itY~i~~~~~~~~~~~~~~~i~~A~~~W~~~t~l~F~~~~~~~adI~I~f~~~~~g~~~~~~G~~g~la~a~~P~~~~~g 92 (168)
T 1cge_A 13 LRYRIENYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSEGQADIMISFVRGDHRDNSPFDGPGGNLAHAFQPGPGIGG 92 (168)
T ss_dssp EEEEECSCCTTSCHHHHHHHHHHHHHHHHTTSSCEEEECSSSCCSEEEEEECSCCSSSSCCCSSSSCCEEECCSSSTTTT
T ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHHHHhhccCceeEEecCCCCcEEEEEeeccccccccccccCCeEEEeECCCCCccc
Confidence 4444 467788999999999999999999999999999987889999999999999999999999999999999987789
Q ss_pred cceeccCCCeeecCccCCCCCCCccccceeeeccccc
Q psy5960 82 DAHFDIDEDWMVLGVSRSANADEGKSLELANADEGRR 118 (121)
Q Consensus 82 diHfD~dE~Wt~~~~~~~~~~~~G~sL~~VaaHEig~ 118 (121)
++|||++|.|+.. ..|.+|+.|++||||.
T Consensus 93 ~~~~d~~~~w~~~--------~~g~~~~~v~~HEiGH 121 (168)
T 1cge_A 93 DAHFDEDERWTNN--------FREYNLHRVAAHELGH 121 (168)
T ss_dssp CEEEETTSCCBSS--------SSSCBHHHHHHHHHHH
T ss_pred eEEEccccccccC--------CCCcchhhhhhhHhHh
Confidence 9999999999853 4788999999999995
No 15
>1slm_A Stromelysin-1; hydrolase, metalloprotease, fibroblast, collagen degradation; 1.90A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11
Probab=99.96 E-value=1.5e-29 Score=197.45 Aligned_cols=104 Identities=40% Similarity=0.697 Sum_probs=97.4
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhcCCCceEEEecCCCccEEEEEeeccCCCCCCCCCCCCceeeccCCCCCCCCcceec
Q psy5960 7 PKRVRHYDRGRLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGRGGDAHFD 86 (121)
Q Consensus 7 ~~~p~~l~~~~vr~~i~~AF~~Ws~vs~l~F~ev~~~~aDI~I~F~~~~H~d~~~FDG~gg~lAHAf~P~~~~~gdiHfD 86 (121)
.+++++++...++++|++||+.|+++++|+|+|+..+.|||+|.|.+++|||++||||++|+|||||+|..+.+|++|||
T Consensus 102 ~~~~~~l~~~~~~~~i~~A~~~W~~vt~l~F~e~~~~~adI~I~f~~~~hgd~~~fdG~~g~lahA~~P~~~~~G~ihfd 181 (255)
T 1slm_A 102 VNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYEGEADIMISFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFD 181 (255)
T ss_dssp CCCCTTSCHHHHHHHHHHHHHHHHTTSSCEEEECSSSCCSEEEEEECSCCSSSCCCCSSSSBCEEECCSSSTTTTCEEEE
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHhcCCeeEEEecCCCcceeeeeeccCCCCccceeCCCCeeeeeecCCCCcCceEEeC
Confidence 56778899999999999999999999999999998888999999999999999999999999999999998888999999
Q ss_pred cCCCeeecCccCCCCCCCccccceeeeccccc
Q psy5960 87 IDEDWMVLGVSRSANADEGKSLELANADEGRR 118 (121)
Q Consensus 87 ~dE~Wt~~~~~~~~~~~~G~sL~~VaaHEig~ 118 (121)
++|.|+++ ..|.+|+.||+||||.
T Consensus 182 ~~e~w~~~--------~~g~~l~~va~HEiGH 205 (255)
T 1slm_A 182 DDEQWTKD--------TTGTNLFLVAAHEIGH 205 (255)
T ss_dssp TTSCEESS--------SSSEEHHHHHHHHHHH
T ss_pred CCCccccC--------CceeeehhhhHHHHHH
Confidence 99999976 3688999999999995
No 16
>1hy7_A Stromelysin-1, MMP-3; mixed alpha beta structure, zinc protease, inhibited, hydrol; HET: MBS; 1.50A {Homo sapiens} SCOP: d.92.1.11 PDB: 1biw_A* 1bm6_A* 1bqo_A* 1b3d_A* 1cqr_A 1d5j_A* 1d7x_A* 1d8f_A* 1d8m_A* 1g05_A* 1g49_A* 1c3i_A* 1sln_A* 1uea_A 2srt_A* 1ums_A* 1umt_A* 2d1o_A* 3oho_A* 1ciz_A* ...
Probab=99.96 E-value=2.2e-29 Score=185.54 Aligned_cols=104 Identities=40% Similarity=0.697 Sum_probs=96.7
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhcCCCceEEEecCCCccEEEEEeeccCCCCCCCCCCCCceeeccCCCCCCCCcceec
Q psy5960 7 PKRVRHYDRGRLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGRGGDAHFD 86 (121)
Q Consensus 7 ~~~p~~l~~~~vr~~i~~AF~~Ws~vs~l~F~ev~~~~aDI~I~F~~~~H~d~~~FDG~gg~lAHAf~P~~~~~gdiHfD 86 (121)
.+++++++...++++|++||+.|+++++|+|+|+..+.|||+|.|.++.|||+++|||++|+|||||+|..+.+|++|||
T Consensus 20 ~~~~~~~~~~~~~~~i~~A~~~W~~~t~l~F~~~~~~~adI~I~f~~~~~g~~~~~~G~~g~la~a~~p~~~~~g~~~~d 99 (173)
T 1hy7_A 20 VNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYEGEADIMISFAVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFD 99 (173)
T ss_dssp CCBCTTSCHHHHHHHHHHHHHHHHTTSSCEEEECSSSCCSEEEEEECSSCSSSCCCCSSSSCCEEECCSSSTTTTCEEEE
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCCcceEEecccCCCeeEEEecccccccceeeCCCceeEEEecCCCCccceEEec
Confidence 46677889899999999999999999999999998788999999999999999999999999999999998878999999
Q ss_pred cCCCeeecCccCCCCCCCccccceeeeccccc
Q psy5960 87 IDEDWMVLGVSRSANADEGKSLELANADEGRR 118 (121)
Q Consensus 87 ~dE~Wt~~~~~~~~~~~~G~sL~~VaaHEig~ 118 (121)
++|.|+++ ..|.+|+.|++||||.
T Consensus 100 ~~~~w~~~--------~~g~~~~~v~~HEiGH 123 (173)
T 1hy7_A 100 DDEQWTKD--------TTGTNLFLVAAHEIGH 123 (173)
T ss_dssp TTSCEESS--------SSSEEHHHHHHHHHHH
T ss_pred cccccccC--------CccchhhhhHHHHHHH
Confidence 99999875 3688999999999995
No 17
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A
Probab=99.95 E-value=7.2e-29 Score=201.38 Aligned_cols=109 Identities=40% Similarity=0.644 Sum_probs=100.1
Q ss_pred ccccc-CCCCCCCChHHHHHHHHHHHHHHhcCCCceEEEecCCCccEEEEEeeccCCCCCCCCCCCCceeeccCCCCCCC
Q psy5960 2 TLKHH-PKRVRHYDRGRLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGRG 80 (121)
Q Consensus 2 ~~~~~-~~~p~~l~~~~vr~~i~~AF~~Ws~vs~l~F~ev~~~~aDI~I~F~~~~H~d~~~FDG~gg~lAHAf~P~~~~~ 80 (121)
+|.+. .+++++|+.+++++++++||+.|+++++|+|+|+..+.|||+|.|.+++|||++||||++|+|||||+|+.+.+
T Consensus 8 ~lty~i~~~~~~~~~~~~~~~i~~A~~~W~~vt~l~F~ev~~~~adI~I~f~~~~hgd~~~fdG~~g~laha~~P~~~~~ 87 (365)
T 3ba0_A 8 YITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDDHAFDGKGGILAHAFGPGSGIG 87 (365)
T ss_dssp CEEEEECCCCTTCCSHHHHHHHHHHHHHHHTTSSCCEEECSSSCCSEEEEEECSSCSSSSCCCSSSSCCEEECCSCSSSS
T ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHHHHhcccCeeEEEecCCCCCEEEEEeccCCCCcccccCCCCeEEEeecCCCCcc
Confidence 34444 57788899999999999999999999999999998889999999999999999999999999999999998888
Q ss_pred CcceeccCCCeeecCccCCCCCCCccccceeeeccccc
Q psy5960 81 GDAHFDIDEDWMVLGVSRSANADEGKSLELANADEGRR 118 (121)
Q Consensus 81 gdiHfD~dE~Wt~~~~~~~~~~~~G~sL~~VaaHEig~ 118 (121)
|++|||++|.|+.+ ..|.+|+.||+||||.
T Consensus 88 g~~hfd~~e~w~~~--------~~g~~~~~~~~HE~gH 117 (365)
T 3ba0_A 88 GDAHFDEDEFWTTH--------SGGTNLFLTAVHEIGH 117 (365)
T ss_dssp SCEEEETTSCEESS--------SSSEESSHHHHHHHHH
T ss_pred ceEEeCCCCCcccC--------CCcccceeehhhhhhh
Confidence 99999999999976 3688999999999985
No 18
>2jsd_A Matrix metalloproteinase-20; MMP-NNGH, structural genomics, structural proteomics in europe, spine, spine-2, spine2-complexes, hydrolase; HET: NGH; NMR {Homo sapiens}
Probab=99.95 E-value=1.9e-28 Score=177.62 Aligned_cols=104 Identities=40% Similarity=0.661 Sum_probs=96.3
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhcCCCceEEEecCCCccEEEEEeeccCCCCCCCCCCCCceeeccCCCCCCCCcceec
Q psy5960 7 PKRVRHYDRGRLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGRGGDAHFD 86 (121)
Q Consensus 7 ~~~p~~l~~~~vr~~i~~AF~~Ws~vs~l~F~ev~~~~aDI~I~F~~~~H~d~~~FDG~gg~lAHAf~P~~~~~gdiHfD 86 (121)
.+++++++..+++++|++||+.|+++++|+|+|+..+.|||+|.|.++.|+|+++|||++|++||||+|..+..|++|||
T Consensus 15 ~~~~~~~~~~~~~~~i~~A~~~W~~~t~l~F~~~~~~~adi~i~f~~~~~g~~~~~~G~~g~~a~a~~p~~~~~g~~~~d 94 (160)
T 2jsd_A 15 SKYTPSMSSVEVDKAVEMALQAWSSAVPLSFVRINSGEADIMISFENGDHGDSYPFDGPRGTLAHAFAPGEGLGGDTHFD 94 (160)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHHHHHHSSCEEEECSSSCCSEEEEEECSCSSSSSCCCSSSSCSEEECCSSSSSTTCEEEE
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHHccCCeeEEEecCCCCCEEEEEeeccCCCCccccCCCCeeEEEecCCCCcCccEEec
Confidence 45677899999999999999999999999999998788999999999999999999999999999999998888999999
Q ss_pred cCCCeeecCccCCCCCCCccccceeeeccccc
Q psy5960 87 IDEDWMVLGVSRSANADEGKSLELANADEGRR 118 (121)
Q Consensus 87 ~dE~Wt~~~~~~~~~~~~G~sL~~VaaHEig~ 118 (121)
++|.|+++ ..|.+++.|++||||.
T Consensus 95 ~~~~~~~~--------~~g~~~~~v~~HEiGH 118 (160)
T 2jsd_A 95 NAEKWTMG--------TNGFNLFTVAAHEFGH 118 (160)
T ss_dssp TTSCEESS--------SSSEEHHHHHHHHHHH
T ss_pred cccccccC--------CcchhhHHHHHHHhHh
Confidence 99999976 3678999999999985
No 19
>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*
Probab=99.94 E-value=6.8e-28 Score=200.49 Aligned_cols=109 Identities=39% Similarity=0.657 Sum_probs=99.6
Q ss_pred cccc-CCCCCCCChHHHHHHHHHHHHHHhcCCCceEEEecCCCccEEEEEeeccCCCCCCCCCCCCceeeccCCCCCCCC
Q psy5960 3 LKHH-PKRVRHYDRGRLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGRGG 81 (121)
Q Consensus 3 ~~~~-~~~p~~l~~~~vr~~i~~AF~~Ws~vs~l~F~ev~~~~aDI~I~F~~~~H~d~~~FDG~gg~lAHAf~P~~~~~g 81 (121)
|.+. .+++++++..+++++|++||+.|+++++|+|+|+..+.|||+|.|.+++|||++||||++|+|||||+|+.+.+|
T Consensus 95 ltY~i~~~~~~l~~~~~~~~i~~A~~~W~~vt~l~F~ev~~~~adI~I~f~~~~hgd~~~fdG~~g~lahA~~P~~~~~g 174 (450)
T 1su3_A 95 LTYRIENYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSEGQADIMISFVRGDHRDNSPFDGPGGNLAHAFQPGPGIGG 174 (450)
T ss_dssp EEEEECCCCTTSCHHHHHHHHHHHHHHHHTTSSCEEEECSSSCCSEEEEEECSCCSSSCCCCSSSSBCEEECCSSSTTTT
T ss_pred ceEEecCCCCCCCHHHHHHHHHHHHHHHhccCceeEEEecCCCCCEEEEEeccCCCCccceecCCCeeeeeecCCCCcCc
Confidence 4444 567788999999999999999999999999999988889999999999999999999999999999999988889
Q ss_pred cceeccCCCeeecCccCCCCCCCccccceeeecccccc
Q psy5960 82 DAHFDIDEDWMVLGVSRSANADEGKSLELANADEGRRH 119 (121)
Q Consensus 82 diHfD~dE~Wt~~~~~~~~~~~~G~sL~~VaaHEig~~ 119 (121)
++|||++|.|+.+ ..|.+|+.||+||||+-
T Consensus 175 ~~hfd~~e~w~~~--------~~g~~l~~v~~HE~GH~ 204 (450)
T 1su3_A 175 DAHFDEDERWTNN--------FREYNLHRVAAHELGHS 204 (450)
T ss_dssp CEEEETTSCCBSS--------SSSCBHHHHHHHHHHHH
T ss_pred ceEeccccccccC--------cceeehhchhhhHHHHh
Confidence 9999999999875 36889999999999963
No 20
>1g9k_A Serralysin; beta jelly roll, hydrolase; 1.96A {Pseudomonas} SCOP: b.80.7.1 d.92.1.6 PDB: 1o0q_A 1o0t_A 1om6_A 1om7_A 1om8_A 1omj_A 1h71_P
Probab=99.79 E-value=3.6e-20 Score=154.65 Aligned_cols=88 Identities=23% Similarity=0.376 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHhcCCCceEEE--ecC-CCccEEEEEeeccCCCCCCCCCCCCceeeccCCCCCCCCcceeccCCCee
Q psy5960 16 GRLRDELRRALDVWSKHSKLTFRE--VND-DRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGRGGDAHFDIDEDWM 92 (121)
Q Consensus 16 ~~vr~~i~~AF~~Ws~vs~l~F~e--v~~-~~aDI~I~F~~~~H~d~~~FDG~gg~lAHAf~P~~~~~gdiHfD~dE~Wt 92 (121)
..+++++++||++|++|++|+|+| |.. ..|||+|.| |||++++|||||+|.....|++|||.+|.|+
T Consensus 83 ~~~~~~i~~A~~~Ws~vt~L~F~e~~v~~~~~AdI~i~~----------fdg~~g~lA~A~~P~~~~~G~~~fd~~~~w~ 152 (463)
T 1g9k_A 83 ALQKEQAKLSLESWADVAKVTFTEGPAARGDDGHMTFAN----------FSASNGGAAFAYLPNSSRKGESWYLINKDYQ 152 (463)
T ss_dssp HHHHHHHHHHHHHHHTTBSEEEEESCCCC-CCEEEEEEE----------ECCGGGCSEEECCTTSTTTTEEEEECBTTBC
T ss_pred HHHHHHHHHHHHHHhcccCceEEEcccCCCCCccEEEEe----------ecCCCcceeeeecCCCCcCCceeeccccccc
Confidence 456799999999999999999999 765 489999998 6789999999999987778999999999998
Q ss_pred ecCccCCCCCCCccccceeeeccccc
Q psy5960 93 VLGVSRSANADEGKSLELANADEGRR 118 (121)
Q Consensus 93 ~~~~~~~~~~~~G~sL~~VaaHEig~ 118 (121)
.... +..+..++.||+||||.
T Consensus 153 ~~~~-----~~~g~~~~~va~HEiGH 173 (463)
T 1g9k_A 153 VNKT-----PGEGNYGRQTLTHEIGH 173 (463)
T ss_dssp TTTS-----CCTTSHHHHHHHHHHHH
T ss_pred cccc-----cCcCccchhhhhhhhhh
Confidence 6532 24455678999999995
No 21
>1k7i_A PROC, secreted protease C; metalloprotease, hydrolase; 1.59A {Erwinia chrysanthemi} SCOP: b.80.7.1 d.92.1.6 PDB: 1k7g_A 1k7q_A 1go8_P 3hbv_P 3hda_P 3hbu_P 1go7_P 3hb2_P
Probab=99.75 E-value=7.7e-19 Score=147.03 Aligned_cols=95 Identities=17% Similarity=0.235 Sum_probs=78.5
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCceEEEecC-CCccEEEEEeeccCCCCCCCCCCCCceeeccCCCCC-CCCcceeccCC
Q psy5960 12 HYDRGRLRDELRRALDVWSKHSKLTFREVND-DRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSG-RGGDAHFDIDE 89 (121)
Q Consensus 12 ~l~~~~vr~~i~~AF~~Ws~vs~l~F~ev~~-~~aDI~I~F~~~~H~d~~~FDG~gg~lAHAf~P~~~-~~gdiHfD~dE 89 (121)
.|++.+ ++++++||++|++|++|+|+||.. .+++|+|.|..+.|++.++ |++|||||+|..+ ..|++||+.+|
T Consensus 96 ~ls~~~-~~~i~~Af~~Ws~vt~L~F~ev~~~~~adI~f~~~~~~~~g~~~----gg~lAhA~~P~~g~~~g~~~~~~~~ 170 (479)
T 1k7i_A 96 KFNAEQ-IEQAKLSLQSWSDVANLTFTEVTGNKSANITFGNYTRDASGNLD----YGTQAYAYYPGNYQGAGSSWYNYNQ 170 (479)
T ss_dssp CCCHHH-HHHHHHHHHHHHTTBSEEEEECCTTCCCSEEEEEECBCTTSCBC----CSCCEEECCSSSSTTTTEEEEETTS
T ss_pred cCCHHH-HHHHHHHHHHHhcccceeEEEeCCCCCeeEEEEEecCCCCCccc----ccceeEeecCCCCccccceEecccc
Confidence 456655 567899999999999999999986 5789999998877765543 8999999999886 46799999999
Q ss_pred CeeecCccCCCCCCCccccceeeeccccc
Q psy5960 90 DWMVLGVSRSANADEGKSLELANADEGRR 118 (121)
Q Consensus 90 ~Wt~~~~~~~~~~~~G~sL~~VaaHEig~ 118 (121)
.|.... ..+..++.||+||||.
T Consensus 171 ~~~~~~-------~~g~~~~~va~HEiGH 192 (479)
T 1k7i_A 171 SNIRNP-------GSEEYGRQTFTHEIGH 192 (479)
T ss_dssp HHHHCT-------TTSHHHHHHHHHHHHH
T ss_pred cccccC-------CCCcccccccHHHHHH
Confidence 987652 4566778999999995
No 22
>1kap_P Alkaline protease; calcium binding protein, zinc metalloprotease; 1.64A {Pseudomonas aeruginosa} SCOP: b.80.7.1 d.92.1.6 PDB: 1jiw_P 1akl_A
Probab=99.74 E-value=1.1e-18 Score=146.17 Aligned_cols=90 Identities=17% Similarity=0.264 Sum_probs=76.7
Q ss_pred CChHHHHHHHHHHHHHHhcCCCceEEEecC-CCccEEEEEeeccCCCCCCCCCCCCceeeccCCCCC--CCCcceeccCC
Q psy5960 13 YDRGRLRDELRRALDVWSKHSKLTFREVND-DRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSG--RGGDAHFDIDE 89 (121)
Q Consensus 13 l~~~~vr~~i~~AF~~Ws~vs~l~F~ev~~-~~aDI~I~F~~~~H~d~~~FDG~gg~lAHAf~P~~~--~~gdiHfD~dE 89 (121)
++ ..+++++++||+.|++|++|+|+||.. .+|||+|.| |+|++|++||||+|..+ ..|++||+.++
T Consensus 97 ls-~~~~~~i~~Af~~Ws~vt~L~F~ev~~~~~AdI~i~f----------~~g~~G~lA~A~~P~~g~~~~g~~~~~~~~ 165 (479)
T 1kap_P 97 FS-AQQQAQAKLSLQSWSDVTNIHFVDAGQGDQGDLTFGN----------FSSSVGGAAFAFLPDVPDALKGQSWYLINS 165 (479)
T ss_dssp CC-HHHHHHHHHHHHHHHTTBSEEEEEEEESSCSSEEEEE----------ECSCCSSSEEECCTTSCTTTTTEEEEECSS
T ss_pred CC-HHHHHHHHHHHHHHhcccCeeEEEcCCCCCccEEEEE----------ecCCCCccEEEECCCCCCccCCceEEeccc
Confidence 44 468899999999999999999999986 489999999 45899999999999886 57899999999
Q ss_pred CeeecCccCCCCCCCccccceeeeccccc
Q psy5960 90 DWMVLGVSRSANADEGKSLELANADEGRR 118 (121)
Q Consensus 90 ~Wt~~~~~~~~~~~~G~sL~~VaaHEig~ 118 (121)
.|+.... +..+..++.||+||||.
T Consensus 166 ~~~~~~~-----~~~g~~~~~va~HEIGH 189 (479)
T 1kap_P 166 SYSANVN-----PANGNYGRQTLTHEIGH 189 (479)
T ss_dssp SCCTTTS-----CCTTSHHHHHHHHHHHH
T ss_pred ccccccC-----CCCCcccceeehhhhhh
Confidence 9975432 24566788999999995
No 23
>1sat_A Serratia protease; parallel beta helix, parallel beta roll, hydrolase (serine protease); 1.75A {Serratia marcescens} SCOP: b.80.7.1 d.92.1.6 PDB: 1af0_A* 1smp_A 1srp_A
Probab=99.68 E-value=7.5e-18 Score=140.75 Aligned_cols=99 Identities=16% Similarity=0.185 Sum_probs=74.1
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCceEEEecC-CCccEEEEEeeccCCCCCCCCCCCCceeeccCCCCCCCCcc-eeccCC
Q psy5960 12 HYDRGRLRDELRRALDVWSKHSKLTFREVND-DRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGRGGDA-HFDIDE 89 (121)
Q Consensus 12 ~l~~~~vr~~i~~AF~~Ws~vs~l~F~ev~~-~~aDI~I~F~~~~H~d~~~FDG~gg~lAHAf~P~~~~~gdi-HfD~dE 89 (121)
.|++.+ ++++++||++|++|++|+|+||.. .+++|+|.|..+.|++.+ ++++|||||+|..+ .. ||+++|
T Consensus 80 ~ls~~~-~~~i~~Af~~Ws~vt~L~F~ev~~~~~adI~f~~~~~~~~g~~----~gg~lahA~~P~~g---~~~~~~~~e 151 (471)
T 1sat_A 80 KFSAEQ-QQQAKLSLQSWADVANITFTEVAAGQKANITFGNYSQDRPGHY----DYGTQAYAFLPNTI---WQGQDLGGQ 151 (471)
T ss_dssp CCCHHH-HHHHHHHHHHHHHHBSEEEEECCTTSCCSEEEEEECEEETTEE----CCSCCEEECCTTCE---ETTEECTTE
T ss_pred cCCHHH-HHHHHHHHHHhhccCCeeEEEcCCCCceEEEEEEecCCCCCcc----cccceeeEecCCCC---cccccccce
Confidence 344555 667999999999999999999986 478898888776665443 38999999999874 34 499999
Q ss_pred CeeecCccCCCCCCCccccceeeeccccc
Q psy5960 90 DWMVLGVSRSANADEGKSLELANADEGRR 118 (121)
Q Consensus 90 ~Wt~~~~~~~~~~~~G~sL~~VaaHEig~ 118 (121)
.|..........+..+..++.||+||||.
T Consensus 152 ~w~~~~~~~~~~~~~g~~~~~va~HEiGH 180 (471)
T 1sat_A 152 TWYNVNQSNVKHPATEDYGRQTFTHEIGH 180 (471)
T ss_dssp EEEETTSHHHHCTTTCHHHHHHHHHHHHH
T ss_pred eeeccccccccCCCcCcccceeeeeeccc
Confidence 99865321000023466678999999995
No 24
>1c7k_A NCNP, zinc endoprotease; alpha and beta protein, metalloproteinase, hydrolase; 1.00A {Streptomyces caespitosus} SCOP: d.92.1.1 PDB: 1kuh_A
Probab=99.66 E-value=1.1e-17 Score=119.66 Aligned_cols=76 Identities=21% Similarity=0.268 Sum_probs=63.2
Q ss_pred hHHHHHHHHHHHHHH-hcCCCceEEEecCCCccEEEEEeeccCCCCCCCCCCCCceeeccCCCCCCCCcceeccCCCeee
Q psy5960 15 RGRLRDELRRALDVW-SKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGRGGDAHFDIDEDWMV 93 (121)
Q Consensus 15 ~~~vr~~i~~AF~~W-s~vs~l~F~ev~~~~aDI~I~F~~~~H~d~~~FDG~gg~lAHAf~P~~~~~gdiHfD~dE~Wt~ 93 (121)
..+++++|++||+.| ++|+||+|+|+ +.|||+|. .++ | +|+.+||++.|+. |++||| |+.
T Consensus 11 ~~~v~~ai~~Afq~W~s~Vt~l~F~ev--~~ADI~I~--~~~-------D-~gg~~A~~~~~g~---G~~~~d----~t~ 71 (132)
T 1c7k_A 11 APSFQQEIANAAQIWNSSVRNVQLRAG--GNADFSYY--EGN-------D-SRGSYAQTDGHGR---GYIFLD----YQQ 71 (132)
T ss_dssp CGGGHHHHHHHHHHHHHHCSSEEEEEC--SSCSEEEE--EEC-------C-TTCCEEEECSSSC---EEEEEE----HHH
T ss_pred hHHHHHHHHHHHHHHHhcCCceEEEEc--CCceEEEE--eCC-------C-CCCceecCCCCCC---CCeEec----ccc
Confidence 568999999999999 59999999999 88999996 221 3 7899999877764 699998 443
Q ss_pred cCccCCCCCCCccccceeeeccccc
Q psy5960 94 LGVSRSANADEGKSLELANADEGRR 118 (121)
Q Consensus 94 ~~~~~~~~~~~G~sL~~VaaHEig~ 118 (121)
. .+++++.|++||||.
T Consensus 72 ~---------~~~~~~~v~aHE~GH 87 (132)
T 1c7k_A 72 N---------QQYDSTRVTAHETGH 87 (132)
T ss_dssp H---------HHSCHHHHHHHHHHH
T ss_pred c---------CCcCCceEEeeeehh
Confidence 2 468999999999985
No 25
>3edh_A Bone morphogenetic protein 1; vicinal disulfide, alternative splicing, calcium, chondrogenesis, cleavage on PAIR of basic residues, cytokine; 1.25A {Homo sapiens} SCOP: d.92.1.0 PDB: 3edg_A 3edi_A
Probab=97.46 E-value=0.00021 Score=53.48 Aligned_cols=50 Identities=28% Similarity=0.422 Sum_probs=39.3
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCceEEEecCCCccEEEEEeeccCCCCCCCCCC
Q psy5960 12 HYDRGRLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGP 65 (121)
Q Consensus 12 ~l~~~~vr~~i~~AF~~Ws~vs~l~F~ev~~~~aDI~I~F~~~~H~d~~~FDG~ 65 (121)
.++. ..+++|++||+.|++++.|+|++... .+..|.|.++++||. .+.|.
T Consensus 22 ~~s~-~~~~~I~~A~~~w~~~TCIrFv~~t~--e~dyI~f~~~~~GC~-S~vG~ 71 (201)
T 3edh_A 22 NFTG-SQRAVFRQAMRHWEKHTCVTFLERTD--EDSYIVFTYRPCGCC-SYVGR 71 (201)
T ss_dssp SCCH-HHHHHHHHHHHHHHHHSSCEEEECSS--CSSEEEEEECCSCSC-CCSSC
T ss_pred CCCH-HHHHHHHHHHHHHHhhccceEEEcCC--CCcEEEEEcCCCCCc-cccCC
Confidence 3443 46899999999999999999999873 345888988888874 45564
No 26
>1l6j_A Matrix metalloproteinase-9; twisted beta sheet flanked by helices, hydrolase; 2.50A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2
Probab=97.19 E-value=3.3e-05 Score=64.02 Aligned_cols=31 Identities=35% Similarity=0.463 Sum_probs=27.6
Q ss_pred CcceeccCCCeeecCccCCCCCCCccccceeeeccccc
Q psy5960 81 GDAHFDIDEDWMVLGVSRSANADEGKSLELANADEGRR 118 (121)
Q Consensus 81 gdiHfD~dE~Wt~~~~~~~~~~~~G~sL~~VaaHEig~ 118 (121)
+++|||.||.|.+.. ..|++|+.||+||||.
T Consensus 356 tt~hyD~DekWg~c~-------~~g~~l~~Va~HE~GH 386 (425)
T 1l6j_A 356 TTSNFDSDKKWGFCP-------DQGYSLFLVAAHEFGH 386 (425)
T ss_dssp SSSBHHHHCCEEECC-------CSCEEHHHHHHHHHHH
T ss_pred cccccccCCceeeec-------cccccchhhhhhhhhh
Confidence 468999999999983 5799999999999995
No 27
>3lq0_A Proastacin; metallopeptidase, zymogen activation, proenzyme, protease, D bond, hydrolase, metal-binding, metalloprotease, zymogen; 1.45A {Astacus astacus} PDB: 1iab_A 1iaa_A 1ast_A 1iac_A 1iad_A 1iae_A 1qji_A* 1qjj_A
Probab=96.70 E-value=0.0017 Score=49.64 Aligned_cols=42 Identities=7% Similarity=0.044 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHhcCCCceEEEecCCCccEEEEEeeccCCCC
Q psy5960 16 GRLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDG 59 (121)
Q Consensus 16 ~~vr~~i~~AF~~Ws~vs~l~F~ev~~~~aDI~I~F~~~~H~d~ 59 (121)
...+++|++||+.|++++.|+|++.. ++.| .|.|.++.+||.
T Consensus 58 ~~~~~~I~~Am~~w~~~TCIrFvprt-~e~d-yI~f~~~~~GC~ 99 (235)
T 3lq0_A 58 GADQSAILSGMQELEEKTCIRFVPRT-TESD-YVEIFTSGSGCW 99 (235)
T ss_dssp HHHHHHHHHHHHHHHHHSSCEEEECS-SCSS-EEEEESSSSSEE
T ss_pred HHHHHHHHHHHHHHHhcccceEEEcC-CCCc-eEEEEeCCCCCc
Confidence 46789999999999999999999975 4455 788888887863
No 28
>3lqb_A Hatching enzyme, LOC792177 protein; hydrolase, metalloprotease, astacin, metal- protease; 1.10A {Danio rerio}
Probab=94.27 E-value=0.047 Score=40.64 Aligned_cols=43 Identities=7% Similarity=0.128 Sum_probs=31.6
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCceEEEecCCCccEEEEEeeccCCC
Q psy5960 12 HYDRGRLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWD 58 (121)
Q Consensus 12 ~l~~~~vr~~i~~AF~~Ws~vs~l~F~ev~~~~aDI~I~F~~~~H~d 58 (121)
.++ ...+++|++||+.|++++.|+|++...... .|.|..+ .||
T Consensus 29 ~~~-~~~~~~I~~A~~~w~~~TCIrFv~r~~~~~--yi~i~~~-~GC 71 (199)
T 3lqb_A 29 EFS-INDKSVIANAISIFHAQTCIRFVPRSIQAD--YLSIENK-DGC 71 (199)
T ss_dssp TSC-HHHHHHHHHHHHHHHHHSSEEEEECSSCSS--EEEEECC-SSE
T ss_pred CCC-HHHHHHHHHHHHHHHhccCceEEEcCCCCc--EEEEEcC-CCc
Confidence 344 356899999999999999999999875443 4555543 454
No 29
>1eak_A 72 kDa type IV collagenase; hydrolase-hydrolase inhibitor complex, hydrolyse, matrix metalloproteinase, gelatinase A, hydrolase- hydrolase inhib complex; 2.66A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1ks0_A 1cxw_A
Probab=78.37 E-value=0.23 Score=41.04 Aligned_cols=54 Identities=28% Similarity=0.366 Sum_probs=40.0
Q ss_pred CCCCCCCCCCceeeccCCCCC--C-------CCcceeccCCCeeecCccCCCCCCCccccceeeeccccc
Q psy5960 58 DGYPFDGPGKILAHAFFPGSG--R-------GGDAHFDIDEDWMVLGVSRSANADEGKSLELANADEGRR 118 (121)
Q Consensus 58 d~~~FDG~gg~lAHAf~P~~~--~-------~gdiHfD~dE~Wt~~~~~~~~~~~~G~sL~~VaaHEig~ 118 (121)
++.|...|-..+.+.+..... + ...+|||.||+|.+.. ..|++|+.||+||||.
T Consensus 314 ~G~pC~fPF~~~~~~y~~Ct~~Gr~~g~~WCatt~~fD~DekWg~Cp-------~~g~~l~~va~HE~GH 376 (421)
T 1eak_A 314 EGAPCVFPFTFLGNKYESCTSAGRSDGKMWCATTANYDDDRKWGFCP-------DQGYSLFLVAAHQFGH 376 (421)
T ss_dssp TTCCCCSSEEETTEEESSCBCTTCSSSCCEEESSSCHHHHCCEEECC-------CCCEEHHHHHHHHHHH
T ss_pred CCCceeeeEEEcceEEEeccccCCcCCceeeeeccccccccceEeec-------cccccchhhhhhhhhh
Confidence 444555555667777776642 2 1358999999999984 5789999999999995
No 30
>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A*
Probab=48.17 E-value=18 Score=30.80 Aligned_cols=40 Identities=10% Similarity=0.071 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHhcCCCceEEEecCCCccEEEEEeeccCCC
Q psy5960 16 GRLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWD 58 (121)
Q Consensus 16 ~~vr~~i~~AF~~Ws~vs~l~F~ev~~~~aDI~I~F~~~~H~d 58 (121)
...+.+|++|++.|++.|-++|++-..... .|.|.++ -||
T Consensus 63 ~~~~~~I~~Am~~~~~~TCIrF~pr~~e~~--yi~i~~~-~GC 102 (592)
T 4gwm_A 63 MNAKGVILNAFERYRLKTCIDFKPWAGETN--YISVFKG-SGC 102 (592)
T ss_dssp HHHHHHHHHHHHHHHHHSSCEEEECSSCSS--EEEEECC-SSE
T ss_pred HHHHHHHHHHHHHHHhCCceeeEECCCCCC--eEEEecC-CcE
Confidence 355789999999999999999988654433 3445443 355
No 31
>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length, metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1gxd_A
Probab=47.59 E-value=2.1 Score=36.92 Aligned_cols=53 Identities=28% Similarity=0.345 Sum_probs=38.4
Q ss_pred CCCCCCCCCceeeccCCCCC--C-------CCcceeccCCCeeecCccCCCCCCCccccceeeeccccc
Q psy5960 59 GYPFDGPGKILAHAFFPGSG--R-------GGDAHFDIDEDWMVLGVSRSANADEGKSLELANADEGRR 118 (121)
Q Consensus 59 ~~~FDG~gg~lAHAf~P~~~--~-------~gdiHfD~dE~Wt~~~~~~~~~~~~G~sL~~VaaHEig~ 118 (121)
+.|...|-..+.+.+.++.. + +..+|||.||.|.++. ..|++|+.||+||||.
T Consensus 317 g~pc~fPf~~~~~~y~~Ct~~gr~~g~~wCatt~~yd~DekWg~c~-------~~g~~l~~va~HE~GH 378 (631)
T 1ck7_A 317 GAPCVFPFTFLGNKYESCTSAGRSDGKMWCATTANYDDDRKWGFCP-------DQGYSLFLVAAHAFGH 378 (631)
T ss_dssp TCCCCSSEEETTEEESSCBCTTCSSCCCEEESSSBHHHHCCEEECC-------CCCEEHHHHHHHHHHH
T ss_pred CCccccceeecCcccccccccCccCCccceecccccCccccccccc-------cccccceehhccccce
Confidence 33433444556677777642 1 1248999999999983 6799999999999985
No 32
>2cki_A Ulilysin; metalloprotease, hydrolase; HET: ARG; 1.7A {Methanosarcina acetivorans} PDB: 2j83_A* 3lum_A* 3lun_A*
Probab=47.09 E-value=11 Score=28.71 Aligned_cols=50 Identities=18% Similarity=0.064 Sum_probs=27.9
Q ss_pred CCCCCceeeccCCCCC--CCCcceeccCCCeeecCccCCCCCCCccccceeeecccccc
Q psy5960 63 DGPGKILAHAFFPGSG--RGGDAHFDIDEDWMVLGVSRSANADEGKSLELANADEGRRH 119 (121)
Q Consensus 63 DG~gg~lAHAf~P~~~--~~gdiHfD~dE~Wt~~~~~~~~~~~~G~sL~~VaaHEig~~ 119 (121)
+..+++|+.|++|... ..| +-.+.+ .. + ..+. ....+++..+++||+|..
T Consensus 122 ~~~~~~lG~a~~P~~~~~~dG-vvi~~~-~~--g-~~g~--~~~~yn~g~TltHEvGH~ 173 (262)
T 2cki_A 122 EIGQDILGYAQFPGGPAETDG-VVIVDA-AF--G-TTGT--ALPPFDKGRTATHEIGHW 173 (262)
T ss_dssp TTSCBCSEEECCTTSCGGGCS-EEEEGG-GS--S-SSTT--CCTTSCSSHHHHHHHHHH
T ss_pred CCCCCceEEEeCCCCccccCe-EEEecc-cc--c-CCCC--ccccccccchhhhhhhhh
Confidence 3457899999999752 112 222221 11 1 0000 123467889999999964
No 33
>1bxn_I Rubisco, protein (ribulose bisphosphate carboxylase small; lyase (carbon-carbon), lyase; 2.70A {Cupriavidus necator} SCOP: d.73.1.1
Probab=41.33 E-value=31 Score=24.21 Aligned_cols=28 Identities=11% Similarity=0.171 Sum_probs=25.4
Q ss_pred Cccccc-CCCCCCCChHHHHHHHHHHHHH
Q psy5960 1 MTLKHH-PKRVRHYDRGRLRDELRRALDV 28 (121)
Q Consensus 1 ~~~~~~-~~~p~~l~~~~vr~~i~~AF~~ 28 (121)
|.||.. .+|-+.|+.+++..-|+.++++
T Consensus 1 m~~~~etfSyLP~ltdeqI~kQI~YlL~q 29 (139)
T 1bxn_I 1 MRITQGTFSFLPELTDEQITKQLEYCLNQ 29 (139)
T ss_dssp CCCCCSBTTTSSCCCHHHHHHHHHHHHHH
T ss_pred CceecceeccCCCCCHHHHHHHHHHHHHC
Confidence 778888 8999999999999999999876
No 34
>1bwv_S Rubisco, protein (ribulose bisphosphate carboxylase); carbon dioxide fixation, complex (rubisco-reaction intermedi high specificity factor; HET: KCX CAP; 2.40A {Galdieria partita} SCOP: d.73.1.1 PDB: 1iwa_B
Probab=39.30 E-value=31 Score=24.18 Aligned_cols=28 Identities=0% Similarity=0.100 Sum_probs=25.3
Q ss_pred Cccccc-CCCCCCCChHHHHHHHHHHHHH
Q psy5960 1 MTLKHH-PKRVRHYDRGRLRDELRRALDV 28 (121)
Q Consensus 1 ~~~~~~-~~~p~~l~~~~vr~~i~~AF~~ 28 (121)
|.||.. .+|-+.|+.+++..-|+.++++
T Consensus 1 ~~~~~etfSyLP~ltdeqI~kQI~Yll~q 29 (138)
T 1bwv_S 1 VRITQGTFSFLPDLTDEQIKKQIDYMISK 29 (138)
T ss_dssp CCCCCSTTTTSCCCCHHHHHHHHHHHHHT
T ss_pred CceecceeccCCCCCHHHHHHHHHHHHHC
Confidence 778888 8999999999999999999876
No 35
>1v5s_A MAP/microtubule affinity-regulating kinase 3; Ka1 domain, ELKL motif, MARK3, phosphorylation, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.129.6.1
Probab=31.13 E-value=47 Score=22.67 Aligned_cols=26 Identities=19% Similarity=0.155 Sum_probs=22.0
Q ss_pred cccccCCCCCCCChHHHHHHHHHHHHH
Q psy5960 2 TLKHHPKRVRHYDRGRLRDELRRALDV 28 (121)
Q Consensus 2 ~~~~~~~~p~~l~~~~vr~~i~~AF~~ 28 (121)
.||+.. ..++.++.+|...|.+|++.
T Consensus 27 ~lk~~f-tTSsk~P~eIm~EI~rvL~~ 52 (126)
T 1v5s_A 27 TENLYF-QGSSGSSGDMMREIRKVLGA 52 (126)
T ss_dssp SSEECC-CCCCSSHHHHHHHHHHHHHH
T ss_pred EEeEEE-eecCCCHHHHHHHHHHHHHH
Confidence 467776 67788999999999999986
No 36
>3o2i_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Leptospirillum rubarum}
Probab=22.50 E-value=57 Score=21.85 Aligned_cols=27 Identities=15% Similarity=0.102 Sum_probs=23.2
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhcCCC
Q psy5960 7 PKRVRHYDRGRLRDELRRALDVWSKHSK 34 (121)
Q Consensus 7 ~~~p~~l~~~~vr~~i~~AF~~Ws~vs~ 34 (121)
.-.|..+++++.-+++-+||+ |+..++
T Consensus 45 L~H~~~~TE~EF~~LLLEA~~-~sSsS~ 71 (125)
T 3o2i_A 45 LLHSEYWTEDEFYNLLLEAFQ-RSSASD 71 (125)
T ss_dssp EEESSCCCHHHHHHHHHHHHT-TSCSCC
T ss_pred EeccccccHHHHHHHHHHHHH-hccCCc
Confidence 345778899999999999997 999887
No 37
>4dxt_A SUN domain-containing protein 2; beta-sandwich, LINC complex, structural protein; 2.22A {Homo sapiens} PDB: 3unp_A 4dxr_A* 4dxs_A* 4fi9_A
Probab=22.12 E-value=72 Score=23.12 Aligned_cols=22 Identities=14% Similarity=0.259 Sum_probs=19.6
Q ss_pred CCCChHHHHHHHHHHHHHHhcC
Q psy5960 11 RHYDRGRLRDELRRALDVWSKH 32 (121)
Q Consensus 11 ~~l~~~~vr~~i~~AF~~Ws~v 32 (121)
+.+++++|+.++++|+++|+.-
T Consensus 2 ~~~~~~~v~~~v~~~l~~~~~D 23 (198)
T 4dxt_A 2 PGVTEEQVHHIVKQALQRYSED 23 (198)
T ss_dssp CSCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHhcc
Confidence 4578999999999999999875
Done!