RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5960
(121 letters)
>d1i76a_ d.92.1.11 (A:) Neutrophil collagenase (MMP-8) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 163
Score = 78.3 bits (192), Expect = 3e-20
Identities = 36/81 (44%), Positives = 46/81 (56%)
Query: 12 HYDRGRLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAH 71
+ ++ A ++WS S L F ++ ADI I F + +H D PFDGP ILAH
Sbjct: 24 QLSEAEVERAIKDAFELWSVASPLIFTRISQGEADINIAFYQRDHGDNSPFDGPNGILAH 83
Query: 72 AFFPGSGRGGDAHFDIDEDWM 92
AF PG G GGDAHFD +E W
Sbjct: 84 AFQPGQGIGGDAHFDAEETWT 104
>d1hfca_ d.92.1.11 (A:) Fibroblast collagenase (MMP-1) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 157
Score = 74.9 bits (183), Expect = 7e-19
Identities = 39/80 (48%), Positives = 51/80 (63%)
Query: 13 YDRGRLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHA 72
R + + +A +WS + LTF +V++ +ADI+I F + +H D PFDGPG LAHA
Sbjct: 19 LPRADVDHAIEKAFQLWSNVTPLTFTKVSEGQADIMISFVRGDHRDNSPFDGPGGNLAHA 78
Query: 73 FFPGSGRGGDAHFDIDEDWM 92
F PG G GGDAHFD DE W
Sbjct: 79 FQPGPGIGGDAHFDEDERWT 98
>d1mmqa_ d.92.1.11 (A:) Matrilysin (MMP-7) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 74.1 bits (181), Expect = 1e-18
Identities = 40/79 (50%), Positives = 49/79 (62%)
Query: 14 DRGRLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAF 73
+ + +AL++W K L FR+V ADI+I F + H D YPFDGPG LAHAF
Sbjct: 27 PHITVDRLVSKALNMWGKEIPLHFRKVVWGTADIMIGFARGAHGDSYPFDGPGNTLAHAF 86
Query: 74 FPGSGRGGDAHFDIDEDWM 92
PG+G GGDAHFD DE W
Sbjct: 87 APGTGLGGDAHFDEDERWT 105
>d1hv5a_ d.92.1.11 (A:) Stromelysin-3 (MMP-11) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 162
Score = 72.6 bits (177), Expect = 5e-18
Identities = 43/81 (53%), Positives = 53/81 (65%)
Query: 11 RHYDRGRLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILA 70
R ++R + AL VWS+ + LTF EV++ RADI+I F + H D PFDGPG ILA
Sbjct: 23 WQLVREQVRQTVAEALQVWSEVTPLTFTEVHEGRADIMIDFARYWHGDNLPFDGPGGILA 82
Query: 71 HAFFPGSGRGGDAHFDIDEDW 91
HAFFP + R GD HFD DE W
Sbjct: 83 HAFFPKTHREGDVHFDYDETW 103
>d1xuca1 d.92.1.11 (A:104-272) Collagenase-3 (MMP-13) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 169
Score = 72.2 bits (176), Expect = 9e-18
Identities = 37/82 (45%), Positives = 46/82 (56%)
Query: 11 RHYDRGRLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILA 70
+ ++A VWS + L F ++D ADI+I F + H D YPFDGP +LA
Sbjct: 24 PDMTHSEVEKAFKKAFKVWSDVTPLNFTRLHDGIADIMISFGIKEHGDFYPFDGPSGLLA 83
Query: 71 HAFFPGSGRGGDAHFDIDEDWM 92
HAF PG GGDAHFD DE W
Sbjct: 84 HAFPPGPNYGGDAHFDDDETWT 105
>d1hy7a_ d.92.1.11 (A:) Stromelysin-1 (MMP-3) {Human (Homo sapiens),
fibroblast [TaxId: 9606]}
Length = 168
Score = 68.8 bits (167), Expect = 2e-16
Identities = 37/80 (46%), Positives = 48/80 (60%)
Query: 13 YDRGRLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHA 72
+ + + +AL VW + + LTF + + ADI+I F H D YPFDGPG +LAHA
Sbjct: 26 LPKDAVDSAVEKALKVWEEVTPLTFSRLYEGEADIMISFAVREHGDFYPFDGPGNVLAHA 85
Query: 73 FFPGSGRGGDAHFDIDEDWM 92
+ PG G GDAHFD DE W
Sbjct: 86 YAPGPGINGDAHFDDDEQWT 105
>d1y93a1 d.92.1.11 (A:106-263) Macrophage elastase (MMP-12) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 158
Score = 67.3 bits (163), Expect = 5e-16
Identities = 40/81 (49%), Positives = 50/81 (61%)
Query: 12 HYDRGRLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAH 71
+R + +R+A VWS + L F ++N ADIL+ F + H D + FDG G ILAH
Sbjct: 19 DMNREDVDYAIRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDDHAFDGKGGILAH 78
Query: 72 AFFPGSGRGGDAHFDIDEDWM 92
AF PGSG GGDAHFD DE W
Sbjct: 79 AFGPGSGIGGDAHFDEDEFWT 99
>d2ovxa1 d.92.1.11 (A:110-443) Gelatinase B (MMP-9) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 159
Score = 66.5 bits (161), Expect = 1e-15
Identities = 40/81 (49%), Positives = 45/81 (55%)
Query: 12 HYDRGRLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAH 71
R + D RA +WS + LTF V ADI+I F H DGYPFDG +LAH
Sbjct: 22 DLPRAVIDDAFARAFALWSAVTPLTFTRVYSRDADIVIQFGVAEHGDGYPFDGKDGLLAH 81
Query: 72 AFFPGSGRGGDAHFDIDEDWM 92
AF PG G GDAHFD DE W
Sbjct: 82 AFPPGPGIQGDAHFDDDELWS 102
>d1rm8a_ d.92.1.11 (A:) Matrix metalloproteinase-16 (MMP-16) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 169
Score = 64.7 bits (156), Expect = 9e-15
Identities = 41/96 (42%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Query: 13 YDRGRLRDELRRALDVWSKHSKLTFREVNDD-------RADILIYFEKENHWDGYPFDGP 65
R +RRA DVW + LTF EV DI I F H D PFDG
Sbjct: 20 VGDPETRKAIRRAFDVWQNVTPLTFEEVPYSELENGKRDVDITIIFASGFHGDSSPFDGE 79
Query: 66 GKILAHAFFPGSGRGGDAHFDIDEDWMVLGVSRSAN 101
G LAHA+FPG G GGD HFD DE W + + N
Sbjct: 80 GGFLAHAYFPGPGIGGDTHFDSDEPWTLGNPNHDGN 115
>d1qiba_ d.92.1.11 (A:) Gelatinase A {Human (Homo sapiens) [TaxId:
9606]}
Length = 161
Score = 63.4 bits (153), Expect = 2e-14
Identities = 40/81 (49%), Positives = 49/81 (60%)
Query: 12 HYDRGRLRDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAH 71
D + D RA VWS + L F ++D ADI+I F + H DGYPFDG +LAH
Sbjct: 20 DLDPETVDDAFARAFQVWSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAH 79
Query: 72 AFFPGSGRGGDAHFDIDEDWM 92
AF PG+G GGD+HFD DE W
Sbjct: 80 AFAPGTGVGGDSHFDDDELWS 100
>d1bqqm_ d.92.1.11 (M:) Membrane-type matrix metalloproteinase
(CDMT1-MMP) {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 58.9 bits (141), Expect = 1e-12
Identities = 37/89 (41%), Positives = 46/89 (51%), Gaps = 8/89 (8%)
Query: 13 YDRGRLRDELRRALDVWSKHSKLTFREVND--------DRADILIYFEKENHWDGYPFDG 64
+ +R+A VW + L FREV +ADI+I+F + H D PFDG
Sbjct: 22 VGEYATYEAIRKAFRVWESATPLRFREVPYAYIREGHEKQADIMIFFAEGFHGDSTPFDG 81
Query: 65 PGKILAHAFFPGSGRGGDAHFDIDEDWMV 93
G LAHA+FPG GGD HFD E W V
Sbjct: 82 EGGFLAHAYFPGPNIGGDTHFDSAEPWTV 110
>d1sata2 d.92.1.6 (A:4-246) Metalloprotease {Serratia marcescens
[TaxId: 615]}
Length = 243
Score = 56.0 bits (134), Expect = 3e-11
Identities = 15/87 (17%), Positives = 36/87 (41%), Gaps = 10/87 (11%)
Query: 19 RDELRRALDVWSKHSKLTFREVNDD-RADILIYFEKENHWDGYPFDGPGKILAHAFFPGS 77
+ + + +L W+ + +TF EV +A+I ++ Y + A+AF P +
Sbjct: 83 QQQAKLSLQSWADVANITFTEVAAGQKANITFGNYSQDRPGHYDYGT----QAYAFLPNT 138
Query: 78 GR-----GGDAHFDIDEDWMVLGVSRS 99
GG +++++ + +
Sbjct: 139 IWQGQDLGGQTWYNVNQSNVKHPATED 165
>d1g9ka2 d.92.1.6 (A:3-244) Metalloprotease {Pseudomonas sp., tac ii
18 [TaxId: 306]}
Length = 242
Score = 55.3 bits (132), Expect = 7e-11
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 9/76 (11%)
Query: 19 RDELRRALDVWSKHSKLTFREVND-DRADILIYFEKENHWDGYPFDGPGKILAHAFFPGS 77
+++ + +L+ W+ +K+TF E D + F F A A+ P S
Sbjct: 84 KEQAKLSLESWADVAKVTFTEGPAARGDDGHMTF--------ANFSASNGGAAFAYLPNS 135
Query: 78 GRGGDAHFDIDEDWMV 93
R G++ + I++D+ V
Sbjct: 136 SRKGESWYLINKDYQV 151
>d1k7ia2 d.92.1.6 (A:18-258) Metalloprotease {Erwinia chrysanthemi
[TaxId: 556]}
Length = 241
Score = 52.9 bits (126), Expect = 4e-10
Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 3/73 (4%)
Query: 23 RRALDVWSKHSKLTFREVNDDRADILIYFEKENHWDGYPFDGPGKILAHAFFPGSGRGGD 82
+ +L WS + LTF EV + I F D A+A++PG+ +G
Sbjct: 89 KLSLQSWSDVANLTFTEVTGN-KSANITFGNYTRDASGNLDYGT--QAYAYYPGNYQGAG 145
Query: 83 AHFDIDEDWMVLG 95
+ + +
Sbjct: 146 SSWYNYNQSNIRN 158
>d1kapp2 d.92.1.6 (P:1-246) Metalloprotease {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 246
Score = 48.3 bits (114), Expect = 2e-08
Identities = 13/76 (17%), Positives = 26/76 (34%), Gaps = 13/76 (17%)
Query: 19 RDELRRALDVWSKHSKLTFREVND-DRADILIYFEKENHWDGYPFDGPGKILAHAFFPGS 77
+ + + +L WS + + F + D+ D+ F A AF P
Sbjct: 93 QAQAKLSLQSWSDVTNIHFVDAGQGDQGDLTFGN----------FSSSVGGAAFAFLPDV 142
Query: 78 GR--GGDAHFDIDEDW 91
G + + I+ +
Sbjct: 143 PDALKGQSWYLINSSY 158
>d1asta_ d.92.1.8 (A:) Astacin {European fresh water crayfish
(Astacus astacus) [TaxId: 6715]}
Length = 200
Score = 29.7 bits (66), Expect = 0.055
Identities = 3/39 (7%), Positives = 12/39 (30%)
Query: 19 RDELRRALDVWSKHSKLTFREVNDDRADILIYFEKENHW 57
+ + + + + + F + + I+ W
Sbjct: 27 QSAILSGMQELEEKTCIRFVPRTTESDYVEIFTSGSGCW 65
>d1ywka1 b.82.1.13 (A:1001-1260) 5-keto-4-deoxyuronate isomerase
KduI {Enterococcus faecalis [TaxId: 1351]}
Length = 260
Score = 25.5 bits (56), Expect = 1.9
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 5 HHPKRVRHYDRGRLRDEL 22
H P +RHY +LRDE
Sbjct: 7 HSPADIRHYSTEQLRDEF 24
>d1ysja1 c.56.5.4 (A:4-177,A:293-379) Protein YxeP {Bacillus
subtilis [TaxId: 1423]}
Length = 261
Score = 24.7 bits (53), Expect = 3.1
Identities = 5/28 (17%), Positives = 12/28 (42%), Gaps = 3/28 (10%)
Query: 73 FFPGSGRGGDAH---FDIDEDWMVLGVS 97
+ G+ + H F +DE+ + +
Sbjct: 221 VWMGTNGTEEWHHPAFTLDEEALTVASQ 248
>d1xrua1 b.82.1.13 (A:1-277) 5-keto-4-deoxyuronate isomerase KduI
{Escherichia coli [TaxId: 562]}
Length = 277
Score = 24.4 bits (53), Expect = 4.1
Identities = 5/18 (27%), Positives = 7/18 (38%)
Query: 5 HHPKRVRHYDRGRLRDEL 22
H + D LR+E
Sbjct: 7 IHSAHAKTLDTQGLRNEF 24
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit
H, transmembrane region {Thermochromatium tepidum
[TaxId: 1050]}
Length = 37
Score = 22.4 bits (48), Expect = 5.0
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 45 ADILIYFEKENHWDGYPFD 63
++IY +E+ +GYP D
Sbjct: 18 FGLIIYLRREDKREGYPLD 36
>d1bwva1 c.1.14.1 (A:150-478) Ribulose 1,5-bisphosphate
carboxylase-oxygenase {Galdieria partita [TaxId: 83374]}
Length = 328
Score = 24.0 bits (52), Expect = 5.4
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
Query: 3 LKHHPKRVRHYDRGRLRDELRRALDVWSKHSKLTFREVNDDRADIL 48
L P+ +R + LR ALD+W K + D +D +
Sbjct: 288 LTEGPEILREA--AKTCGALRTALDLW-KDITFNYTST--DTSDFV 328
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.140 0.443
Gapped
Lambda K H
0.267 0.0641 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 521,754
Number of extensions: 24541
Number of successful extensions: 95
Number of sequences better than 10.0: 1
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 30
Length of query: 121
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 46
Effective length of database: 1,377,846
Effective search space: 63380916
Effective search space used: 63380916
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.1 bits)