BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy597
(546 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NF1|A Chain A, Crystal Structure Of The Tpr Domain Of Kinesin Light Chain
1
Length = 311
Score = 357 bits (917), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 190/313 (60%), Positives = 211/313 (67%), Gaps = 39/313 (12%)
Query: 206 NAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRS 265
GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSG
Sbjct: 18 GGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSG--------------- 62
Query: 266 RKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREK 325
HDHPDVATMLNILALVYRDQNKYK+AANLLNDAL IREK
Sbjct: 63 ---------------------HDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101
Query: 326 TLGENHXXXXXXXXXXXXXYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKXXXXXXX 385
TLG++H YGKRGKYKEAEPLCKRALEIREKVLGK+HPDVAK
Sbjct: 102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLAL 161
Query: 386 XXXXXSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQV 445
KYEEVE YYQRALEIY+ KLGPDD NVAKTKNNLASCYLKQGK+K+AE LYK++
Sbjct: 162 LCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEI 221
Query: 446 LTRAHEREFGACDGDNKPIW---QDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTK 502
LTRAHEREFG+ D +NKPIW ++R++ K K ++ + D V T
Sbjct: 222 LTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTL 281
Query: 503 NNLASCYLKQGKY 515
NL + Y +QGK+
Sbjct: 282 KNLGALYRRQGKF 294
Score = 190 bits (483), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 117/262 (44%), Positives = 138/262 (52%), Gaps = 38/262 (14%)
Query: 284 SGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHXXXXXXXXXXXX 343
GG++ P L+ L + Y Q +Y+ A L AL EKT G +H
Sbjct: 18 GGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILAL 77
Query: 344 XYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKXXXXXXXXXXXXSKYEEVERYYQRA 403
Y + KYK+A L AL IREK LGK+HP VA KY+E E +RA
Sbjct: 78 VYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRA 137
Query: 404 LEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKP 463
LEI E LG D +VAK NNLA QGKY+E E
Sbjct: 138 LEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEY----------------------- 174
Query: 464 IWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYK 523
YYQRALEIY+ KLGPDD NVAKTKNNLASCYLKQGK+K+AE LYK
Sbjct: 175 ---------------YYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYK 219
Query: 524 QVLTRAHEREFGACDGDNKPIW 545
++LTRAHEREFG+ D +NKPIW
Sbjct: 220 EILTRAHEREFGSVDDENKPIW 241
>pdb|3CEQ|A Chain A, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2)
pdb|3CEQ|B Chain B, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2)
Length = 283
Score = 295 bits (756), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 163/291 (56%), Positives = 186/291 (63%), Gaps = 39/291 (13%)
Query: 234 AVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVA 293
AVPLCKQALEDLEKTSG HDHPDVA
Sbjct: 20 AVPLCKQALEDLEKTSG------------------------------------HDHPDVA 43
Query: 294 TMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHXXXXXXXXXXXXXYGKRGKYKE 353
TMLNILALVYRDQNKYKEAA+LLNDAL IREKTLG++H YGKRGKYKE
Sbjct: 44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKE 103
Query: 354 AEPLCKRALEIREKVLGKEHPDVAKXXXXXXXXXXXXSKYEEVERYYQRALEIYELKLGP 413
AEPLCKRALEIREKVLGK HPDVAK K EEVE YY+RALEIY +LGP
Sbjct: 104 AEPLCKRALEIREKVLGKFHPDVAKQLSNLALLCQNQGKAEEVEYYYRRALEIYATRLGP 163
Query: 414 DDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIW---QDRQK 470
DD NVAKTKNNLASCYLKQGKY++AE LYK++LTRAHE+EFG+ +GDNKPIW ++R++
Sbjct: 164 DDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREE 223
Query: 471 NKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEIL 521
+K K R+ + D V T +L + Y +QGK + A L
Sbjct: 224 SKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTL 274
Score = 181 bits (459), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 106/198 (53%), Positives = 124/198 (62%), Gaps = 8/198 (4%)
Query: 354 AEPLCKRALEIREKVLGKEHPDVAKXXXXXXXXXXXXSKYEEVERYYQRALEIYELKLGP 413
A PLCK+ALE EK G +HPDVA +KY+E AL I E LG
Sbjct: 20 AVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGK 79
Query: 414 DDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGD------NKPIWQD 467
D VA T NNLA Y K+GKYKEAE L K+ L E+ G D N +
Sbjct: 80 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRAL-EIREKVLGKFHPDVAKQLSNLALLCQ 138
Query: 468 RQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 527
Q KA+ E YY+RALEIY +LGPDD NVAKTKNNLASCYLKQGKY++AE LYK++LT
Sbjct: 139 NQ-GKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197
Query: 528 RAHEREFGACDGDNKPIW 545
RAHE+EFG+ +GDNKPIW
Sbjct: 198 RAHEKEFGSVNGDNKPIW 215
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 96/241 (39%), Gaps = 51/241 (21%)
Query: 208 GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRK 267
G + PA TL+NL + Y +G+Y+ A PLCK+ALE EK GK+
Sbjct: 78 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF--------------- 122
Query: 268 ESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTL 327
HPDVA L+ LAL+ ++Q K +E AL I L
Sbjct: 123 ---------------------HPDVAKQLSNLALLCQNQGKAEEVEYYYRRALEIYATRL 161
Query: 328 GENHXXXXXXXXXXXXXYGKRGKYKEAEPLCKRAL-EIREKVLGKEHPD------VAKXX 380
G + Y K+GKY++AE L K L EK G + D A+
Sbjct: 162 GPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEER 221
Query: 381 XXXXXXXXXXSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEI 440
+ Y E +Y +A ++ D V T +L + Y +QGK + A
Sbjct: 222 EESKDKRRDSAPYGEYGSWY-KACKV-------DSPTVNTTLRSLGALYRRQGKLEAAHT 273
Query: 441 L 441
L
Sbjct: 274 L 274
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 240 QALEDLEKTSGKYEAAETLEDCALRSRK 267
++L L + GK EAA TLEDCA R+RK
Sbjct: 256 RSLGALYRRQGKLEAAHTLEDCASRNRK 283
>pdb|3EDT|B Chain B, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|D Chain D, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|F Chain F, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|H Chain H, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
Length = 283
Score = 295 bits (756), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 163/291 (56%), Positives = 186/291 (63%), Gaps = 39/291 (13%)
Query: 234 AVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVA 293
AVPLCKQALEDLEKTSG HDHPDVA
Sbjct: 20 AVPLCKQALEDLEKTSG------------------------------------HDHPDVA 43
Query: 294 TMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHXXXXXXXXXXXXXYGKRGKYKE 353
TMLNILALVYRDQNKYKEAA+LLNDAL IREKTLG++H YGKRGKYKE
Sbjct: 44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKE 103
Query: 354 AEPLCKRALEIREKVLGKEHPDVAKXXXXXXXXXXXXSKYEEVERYYQRALEIYELKLGP 413
AEPLCKRALEIREKVLGK HPDVAK K EEVE YY+RALEIY +LGP
Sbjct: 104 AEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGP 163
Query: 414 DDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIW---QDRQK 470
DD NVAKTKNNLASCYLKQGKY++AE LYK++LTRAHE+EFG+ +GDNKPIW ++R++
Sbjct: 164 DDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREE 223
Query: 471 NKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEIL 521
+K K R+ + D V T +L + Y +QGK + A L
Sbjct: 224 SKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTL 274
Score = 182 bits (463), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 105/197 (53%), Positives = 124/197 (62%), Gaps = 6/197 (3%)
Query: 354 AEPLCKRALEIREKVLGKEHPDVAKXXXXXXXXXXXXSKYEEVERYYQRALEIYELKLGP 413
A PLCK+ALE EK G +HPDVA +KY+E AL I E LG
Sbjct: 20 AVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGK 79
Query: 414 DDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGD-----NKPIWQDR 468
D VA T NNLA Y K+GKYKEAE L K+ L E+ G D N +
Sbjct: 80 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRAL-EIREKVLGKFHPDVAKQLNNLALLCQ 138
Query: 469 QKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 528
+ KA+ E YY+RALEIY +LGPDD NVAKTKNNLASCYLKQGKY++AE LYK++LTR
Sbjct: 139 NQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198
Query: 529 AHEREFGACDGDNKPIW 545
AHE+EFG+ +GDNKPIW
Sbjct: 199 AHEKEFGSVNGDNKPIW 215
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 96/241 (39%), Gaps = 51/241 (21%)
Query: 208 GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRK 267
G + PA TL+NL + Y +G+Y+ A PLCK+ALE EK GK+
Sbjct: 78 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF--------------- 122
Query: 268 ESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTL 327
HPDVA LN LAL+ ++Q K +E AL I L
Sbjct: 123 ---------------------HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRL 161
Query: 328 GENHXXXXXXXXXXXXXYGKRGKYKEAEPLCKRAL-EIREKVLGKEHPD------VAKXX 380
G + Y K+GKY++AE L K L EK G + D A+
Sbjct: 162 GPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEER 221
Query: 381 XXXXXXXXXXSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEI 440
+ Y E +Y +A ++ D V T +L + Y +QGK + A
Sbjct: 222 EESKDKRRDSAPYGEYGSWY-KACKV-------DSPTVNTTLRSLGALYRRQGKLEAAHT 273
Query: 441 L 441
L
Sbjct: 274 L 274
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 240 QALEDLEKTSGKYEAAETLEDCALRSRK 267
++L L + GK EAA TLEDCA R+RK
Sbjct: 256 RSLGALYRRQGKLEAAHTLEDCASRNRK 283
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 61/137 (44%), Gaps = 26/137 (18%)
Query: 393 YEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL---TRA 449
Y+E YYQ+ALE+ D A+ NL + Y KQG Y EA Y++ L R+
Sbjct: 17 YDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 68
Query: 450 HEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCY 509
E + + K + +YYQ+ALE+ D A+ NL + Y
Sbjct: 69 AEAWYNLGNAYYK-------QGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAY 113
Query: 510 LKQGKYKEAEILYKQVL 526
KQG Y EA Y++ L
Sbjct: 114 YKQGDYDEAIEYYQKAL 130
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 49/111 (44%), Gaps = 18/111 (16%)
Query: 419 AKTKNNLASCYLKQGKYKEAEILYKQVL---TRAHEREFGACDGDNKPIWQDRQKNKAKN 475
A+ NL + Y KQG Y EA Y++ L R+ E + + K +
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK-------QGDYDE 53
Query: 476 REKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
+YYQ+ALE+ D A+ NL + Y KQG Y EA Y++ L
Sbjct: 54 AIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 96
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 52/118 (44%), Gaps = 22/118 (18%)
Query: 414 DDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKA 473
D N A+ NL + Y KQG Y EA Y++ L D +N W +
Sbjct: 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALE---------LDPNNAEAWYNLGNAYY 54
Query: 474 KNRE-----KYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
K + +YYQ+ALE+ D N A+ NL + Y KQG Y EA Y++ L
Sbjct: 55 KQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 104
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 56/126 (44%), Gaps = 30/126 (23%)
Query: 393 YEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 452
Y+E YYQ+ALE+ D N A+ NL + Y KQG Y EA Y++ L
Sbjct: 25 YDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE----- 71
Query: 453 EFGACDGDNKPIWQDRQKNKAKNRE-----KYYQRALEIYELKLGPDDSNVAKTKNNLAS 507
D +N W + K + +YYQ+ALE+ D N A+ K NL +
Sbjct: 72 ----LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAKQNLGN 119
Query: 508 CYLKQG 513
KQG
Sbjct: 120 AKQKQG 125
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 58/121 (47%), Gaps = 20/121 (16%)
Query: 393 YEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 452
Y++ YYQ+ALE+ D N A NL + Y KQG Y++A Y++ L
Sbjct: 25 YQKAIEYYQKALEL--------DPNNASAWYNLGNAYYKQGDYQKAIEYYQKALE----- 71
Query: 453 EFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ 512
D +N W R A ++ YQ+A+E Y+ L D +N AK K NL + KQ
Sbjct: 72 ----LDPNNAKAWYRR--GNAYYKQGDYQKAIEDYQKALELDPNN-AKAKQNLGNAKQKQ 124
Query: 513 G 513
G
Sbjct: 125 G 125
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 12/113 (10%)
Query: 414 DDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKA 473
D N A+ NL + Y KQG Y++A Y++ L D +N W + A
Sbjct: 4 DPGNSAEAWKNLGNAYYKQGDYQKAIEYYQKALE---------LDPNNASAWYNL--GNA 52
Query: 474 KNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
++ YQ+A+E Y+ L D +N AK + Y KQG Y++A Y++ L
Sbjct: 53 YYKQGDYQKAIEYYQKALELDPNN-AKAWYRRGNAYYKQGDYQKAIEDYQKAL 104
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 51/118 (43%), Gaps = 22/118 (18%)
Query: 414 DDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKA 473
D N A+ NL + Y KQG Y EA Y++ L +N W +
Sbjct: 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYP---------NNAEAWYNLGNAYY 54
Query: 474 KNRE-----KYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
K + +YYQ+ALE+Y N A+ NL + Y KQG Y EA Y++ L
Sbjct: 55 KQGDYDEAIEYYQKALELY--------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 104
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 58/137 (42%), Gaps = 28/137 (20%)
Query: 394 EEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHERE 453
EE R Y++ALE++ A +NLAS +QGK +EA + YK+ + +
Sbjct: 26 EEAVRLYRKALEVF--------PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS---- 73
Query: 454 FGACDGDNKPIWQDRQKNKAKNREKY--YQRALEIYE--LKLGPDDSNVAKTKNNLASCY 509
P + D N ++ Q AL+ Y +++ P A +NLAS +
Sbjct: 74 ---------PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA---FADAHSNLASIH 121
Query: 510 LKQGKYKEAEILYKQVL 526
G EA Y+ L
Sbjct: 122 KDSGNIPEAIASYRTAL 138
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 8/54 (14%)
Query: 393 YEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 446
Y+E YYQ+ALE+ D N A+ NL + Y KQG Y EA Y++ L
Sbjct: 25 YDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 45/105 (42%), Gaps = 22/105 (20%)
Query: 414 DDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKA 473
D N A+ NL + Y KQG Y EA Y++ L D +N W +
Sbjct: 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALE---------LDPNNAEAWYNLGNAYY 54
Query: 474 KNRE-----KYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQG 513
K + +YYQ+ALE+ D N A+ K NL + KQG
Sbjct: 55 KQGDYDEAIEYYQKALEL--------DPNNAEAKQNLGNAKQKQG 91
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 16/89 (17%)
Query: 345 YGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKXXXXXXXXXXXXSKYEEVERYYQRAL 404
Y K+G Y EA ++ALE+ P+ A+ Y+E YYQ+AL
Sbjct: 19 YYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70
Query: 405 EIYELKLGPDDSNVAKTKNNLASCYLKQG 433
E+ D N A+ K NL + KQG
Sbjct: 71 EL--------DPNNAEAKQNLGNAKQKQG 91
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 8/54 (14%)
Query: 393 YEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 446
Y+E YYQ+ALE+ D A+ NL + Y KQG Y EA Y++ L
Sbjct: 19 YDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 64
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 8/49 (16%)
Query: 478 KYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
+YYQ+ALE+ D A+ NL + Y KQG Y EA Y++ L
Sbjct: 24 EYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 64
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 8/53 (15%)
Query: 394 EEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 446
EE R Y++ALE++ P+ A +NLAS +QGK +EA + YK+ +
Sbjct: 322 EEAVRLYRKALEVF-----PE---FAAAHSNLASVLQQQGKLQEALMHYKEAI 366
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 55/127 (43%), Gaps = 20/127 (15%)
Query: 400 YQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDG 459
Y+RA+E+ + NLA+ ++G EAE Y L D
Sbjct: 260 YRRAIEL--------QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHA----DS 307
Query: 460 DNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAE 519
N R++ + + Y++ALE++ P+ A +NLAS +QGK +EA
Sbjct: 308 LNNLANIKREQGNIEEAVRLYRKALEVF-----PE---FAAAHSNLASVLQQQGKLQEAL 359
Query: 520 ILYKQVL 526
+ YK+ +
Sbjct: 360 MHYKEAI 366
>pdb|2HI4|A Chain A, Crystal Structure Of Human Microsomal P450 1a2 In Complex
With Alpha-Naphthoflavone
Length = 495
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 22/132 (16%)
Query: 396 VERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGK-YKEAEILYKQVL-TRAHERE 453
+ R QR ++ ++++G V + + ++QG +K LY L T
Sbjct: 41 LSRMSQRYGDVLQIRIGSTPVLVLSRLDTIRQALVRQGDDFKGRPDLYTSTLITDGQSLT 100
Query: 454 FGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQG 513
F D+ P+W R++ Q AL + + P S +SCYL++
Sbjct: 101 FST---DSGPVWAARRR--------LAQNALNTFSIASDPASS---------SSCYLEEH 140
Query: 514 KYKEAEILYKQV 525
KEA+ L ++
Sbjct: 141 VSKEAKALISRL 152
>pdb|3SQV|A Chain A, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|B Chain B, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
Length = 616
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 432 QGKYKEAEILY---KQVLTRAHEREFGACDGDNKPIWQD 467
Q +++E +Y ++V + +FG CDG KP W D
Sbjct: 322 QERFRELYEVYLKNEKVYPVTQQSDFGLCDGSGKPDWDD 360
>pdb|3NAW|A Chain A, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
pdb|3NAW|B Chain B, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
pdb|3NB2|A Chain A, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
pdb|3NB2|B Chain B, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
pdb|3NB2|C Chain C, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
pdb|3NB2|D Chain D, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
Length = 613
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 432 QGKYKEAEILY---KQVLTRAHEREFGACDGDNKPIWQD 467
Q +++E +Y ++V + +FG CDG KP W D
Sbjct: 319 QERFRELYEVYLKNEKVYPVTQQSDFGLCDGSGKPDWDD 357
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.310 0.128 0.357
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,151,681
Number of Sequences: 62578
Number of extensions: 602789
Number of successful extensions: 1673
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 1493
Number of HSP's gapped (non-prelim): 128
length of query: 546
length of database: 14,973,337
effective HSP length: 104
effective length of query: 442
effective length of database: 8,465,225
effective search space: 3741629450
effective search space used: 3741629450
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (25.4 bits)