Query psy597
Match_columns 546
No_of_seqs 1034 out of 2429
Neff 10.0
Searched_HMMs 46136
Date Fri Aug 16 23:14:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy597.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/597hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1840|consensus 100.0 1.6E-47 3.4E-52 383.0 49.9 472 21-535 2-486 (508)
2 KOG4626|consensus 100.0 4.4E-28 9.6E-33 236.5 17.3 291 199-535 202-492 (966)
3 KOG4626|consensus 100.0 4.8E-27 1E-31 229.3 23.2 342 119-531 113-454 (966)
4 KOG1840|consensus 99.9 2.1E-22 4.6E-27 202.5 39.8 392 31-509 95-502 (508)
5 TIGR00990 3a0801s09 mitochondr 99.9 2.4E-21 5.1E-26 208.1 28.3 247 209-531 325-574 (615)
6 PF09311 Rab5-bind: Rabaptin-l 99.9 2.9E-23 6.3E-28 183.1 7.2 172 77-249 1-174 (181)
7 KOG1126|consensus 99.9 6.1E-21 1.3E-25 189.8 19.0 287 200-532 338-624 (638)
8 TIGR00990 3a0801s09 mitochondr 99.9 4.9E-20 1.1E-24 197.9 27.7 192 307-531 308-499 (615)
9 PRK15174 Vi polysaccharide exp 99.8 5.5E-18 1.2E-22 181.8 27.5 203 295-533 180-386 (656)
10 PRK11788 tetratricopeptide rep 99.8 9.3E-18 2E-22 170.9 27.8 298 199-536 53-357 (389)
11 PRK11447 cellulose synthase su 99.8 3.1E-17 6.8E-22 187.7 34.0 413 63-532 41-528 (1157)
12 KOG1130|consensus 99.8 2.3E-18 4.9E-23 161.6 18.3 286 201-532 40-348 (639)
13 KOG1155|consensus 99.8 5.2E-17 1.1E-21 155.0 24.5 279 211-528 258-536 (559)
14 TIGR02917 PEP_TPR_lipo putativ 99.8 2.6E-17 5.7E-22 185.7 26.5 284 205-526 591-898 (899)
15 PRK11447 cellulose synthase su 99.8 3E-17 6.5E-22 187.9 26.2 296 196-530 284-702 (1157)
16 KOG0547|consensus 99.8 2.5E-17 5.4E-22 158.0 20.3 242 214-531 325-569 (606)
17 PRK09782 bacteriophage N4 rece 99.8 4.5E-17 9.8E-22 178.9 25.0 281 203-533 463-745 (987)
18 TIGR02917 PEP_TPR_lipo putativ 99.8 8.4E-17 1.8E-21 181.6 27.6 289 197-531 38-327 (899)
19 KOG1126|consensus 99.8 5.2E-18 1.1E-22 169.1 15.2 249 213-533 315-591 (638)
20 TIGR02521 type_IV_pilW type IV 99.8 1.4E-16 3E-21 149.4 24.1 206 212-529 28-233 (234)
21 PRK11788 tetratricopeptide rep 99.8 1.7E-16 3.7E-21 161.7 25.9 283 214-533 34-316 (389)
22 KOG1173|consensus 99.8 5.9E-17 1.3E-21 158.4 19.8 280 213-534 242-524 (611)
23 KOG1130|consensus 99.7 6.3E-17 1.4E-21 152.0 18.1 267 218-532 20-308 (639)
24 PRK15174 Vi polysaccharide exp 99.7 2.5E-16 5.3E-21 169.2 25.2 293 194-532 55-351 (656)
25 COG3063 PilF Tfp pilus assembl 99.7 4.7E-16 1E-20 136.3 20.5 209 212-532 32-240 (250)
26 PRK09782 bacteriophage N4 rece 99.7 4.5E-16 9.7E-21 171.1 22.9 264 204-517 499-762 (987)
27 PRK11189 lipoprotein NlpI; Pro 99.7 3.9E-16 8.6E-21 151.5 18.6 209 288-530 59-267 (296)
28 COG3063 PilF Tfp pilus assembl 99.7 9E-16 1.9E-20 134.5 16.0 172 288-527 30-201 (250)
29 KOG1129|consensus 99.7 5.5E-16 1.2E-20 141.7 15.1 237 219-533 227-463 (478)
30 PF13429 TPR_15: Tetratricopep 99.7 4E-16 8.7E-21 151.0 14.3 239 211-529 40-278 (280)
31 KOG2002|consensus 99.7 2.1E-14 4.7E-19 148.7 27.0 303 199-529 148-482 (1018)
32 PRK10049 pgaA outer membrane p 99.7 2E-14 4.3E-19 157.7 28.3 312 197-533 99-461 (765)
33 KOG1173|consensus 99.7 1.6E-15 3.5E-20 148.4 16.8 217 205-486 302-518 (611)
34 PRK12370 invasion protein regu 99.7 1.8E-14 3.9E-19 152.3 25.7 208 288-532 290-506 (553)
35 PRK12370 invasion protein regu 99.7 1.5E-14 3.2E-19 153.0 23.0 248 199-528 279-535 (553)
36 PF13429 TPR_15: Tetratricopep 99.6 6.2E-16 1.3E-20 149.7 9.8 237 219-533 12-248 (280)
37 TIGR02521 type_IV_pilW type IV 99.6 3.3E-14 7.3E-19 133.2 20.7 174 288-529 26-199 (234)
38 KOG2002|consensus 99.6 6.3E-14 1.4E-18 145.3 23.2 219 288-530 302-527 (1018)
39 KOG1155|consensus 99.6 1.2E-13 2.5E-18 132.4 21.9 173 209-449 324-496 (559)
40 PRK10049 pgaA outer membrane p 99.6 2.8E-13 6.1E-18 148.7 28.0 308 197-531 31-391 (765)
41 KOG0547|consensus 99.6 2.6E-13 5.6E-18 130.8 23.9 290 212-531 112-494 (606)
42 KOG2003|consensus 99.6 1.6E-13 3.5E-18 130.7 22.2 272 212-532 416-693 (840)
43 TIGR03302 OM_YfiO outer membra 99.6 1.5E-13 3.2E-18 129.5 21.6 182 211-448 29-232 (235)
44 PRK11189 lipoprotein NlpI; Pro 99.6 1.8E-13 3.8E-18 133.0 21.9 225 210-514 59-286 (296)
45 KOG1125|consensus 99.6 3E-14 6.6E-19 140.3 16.4 237 219-533 289-532 (579)
46 TIGR03302 OM_YfiO outer membra 99.6 2.1E-13 4.6E-18 128.5 20.6 199 288-530 28-234 (235)
47 COG2956 Predicted N-acetylgluc 99.5 4.3E-12 9.3E-17 116.6 24.1 262 197-531 51-314 (389)
48 PRK04841 transcriptional regul 99.5 1.4E-11 3.1E-16 139.3 34.0 276 214-535 451-767 (903)
49 KOG0624|consensus 99.5 4.8E-12 1E-16 116.9 24.2 298 199-533 56-375 (504)
50 KOG1174|consensus 99.5 4.9E-12 1.1E-16 119.6 22.7 286 201-533 218-505 (564)
51 KOG1125|consensus 99.5 3.7E-13 8.1E-18 132.7 14.9 197 195-451 299-530 (579)
52 KOG1129|consensus 99.5 1.5E-12 3.1E-17 119.6 16.4 190 197-451 272-461 (478)
53 cd05804 StaR_like StaR_like; a 99.5 5.2E-12 1.1E-16 126.9 21.8 213 211-485 2-214 (355)
54 KOG1941|consensus 99.5 1.2E-10 2.7E-15 108.5 28.6 315 211-532 39-364 (518)
55 KOG4162|consensus 99.5 3E-11 6.4E-16 123.0 24.9 264 203-537 466-792 (799)
56 PF14938 SNAP: Soluble NSF att 99.5 1.3E-11 2.8E-16 119.1 21.6 155 288-449 30-185 (282)
57 TIGR00540 hemY_coli hemY prote 99.4 1.9E-11 4E-16 124.7 23.7 283 210-529 113-400 (409)
58 cd05804 StaR_like StaR_like; a 99.4 2.6E-11 5.6E-16 121.9 24.4 299 207-532 35-340 (355)
59 KOG0495|consensus 99.4 5.8E-11 1.3E-15 118.4 25.6 225 203-451 504-785 (913)
60 KOG2003|consensus 99.4 8.7E-12 1.9E-16 119.1 18.0 223 212-514 487-709 (840)
61 PLN02789 farnesyltranstransfer 99.4 8.7E-11 1.9E-15 114.0 25.4 221 212-512 34-268 (320)
62 KOG2076|consensus 99.4 8.4E-11 1.8E-15 121.7 25.7 294 212-533 136-483 (895)
63 KOG0624|consensus 99.4 4.7E-11 1E-15 110.5 21.4 210 208-486 31-252 (504)
64 PRK10747 putative protoheme IX 99.4 5E-11 1.1E-15 120.9 23.5 204 297-530 122-359 (398)
65 PRK10803 tol-pal system protei 99.4 9.4E-11 2E-15 110.3 23.2 203 72-365 44-247 (263)
66 KOG1941|consensus 99.4 6.5E-11 1.4E-15 110.3 21.2 265 217-531 8-278 (518)
67 PF14938 SNAP: Soluble NSF att 99.4 2.8E-11 6.1E-16 116.7 19.7 195 212-450 32-227 (282)
68 PRK10747 putative protoheme IX 99.4 1.4E-10 3E-15 117.7 24.6 237 218-529 121-391 (398)
69 KOG0550|consensus 99.4 1.8E-11 3.9E-16 116.1 16.3 293 213-531 47-353 (486)
70 KOG0548|consensus 99.4 8.1E-11 1.8E-15 115.5 21.0 245 214-524 223-485 (539)
71 COG2956 Predicted N-acetylgluc 99.4 1.6E-10 3.4E-15 106.5 20.7 242 218-531 38-281 (389)
72 PRK04841 transcriptional regul 99.4 5.7E-10 1.2E-14 126.4 30.3 237 292-533 451-725 (903)
73 KOG2076|consensus 99.3 2.9E-10 6.3E-15 117.8 24.4 293 204-526 162-510 (895)
74 TIGR00540 hemY_coli hemY prote 99.3 1.2E-10 2.6E-15 118.8 21.8 163 300-487 232-400 (409)
75 PLN03218 maturation of RBCL 1; 99.3 7.7E-10 1.7E-14 123.2 28.8 205 293-528 579-783 (1060)
76 PRK15359 type III secretion sy 99.3 4.8E-11 1E-15 102.5 13.8 112 313-451 13-124 (144)
77 PRK15359 type III secretion sy 99.3 5.3E-11 1.2E-15 102.2 13.4 112 296-431 27-138 (144)
78 PLN03218 maturation of RBCL 1; 99.3 5.2E-10 1.1E-14 124.6 24.7 207 293-528 542-748 (1060)
79 PLN03081 pentatricopeptide (PP 99.3 7.7E-11 1.7E-15 128.9 17.8 270 214-529 289-558 (697)
80 PRK14574 hmsH outer membrane p 99.3 1.1E-09 2.5E-14 118.7 25.2 204 206-444 25-228 (822)
81 PRK15179 Vi polysaccharide bio 99.3 3.2E-10 7E-15 120.6 20.1 133 294-447 50-182 (694)
82 PLN02789 farnesyltranstransfer 99.2 5.9E-10 1.3E-14 108.2 19.2 206 289-530 33-252 (320)
83 PRK10370 formate-dependent nit 99.2 4.1E-10 8.9E-15 102.1 17.0 123 306-452 52-177 (198)
84 COG5010 TadD Flp pilus assembl 99.2 2.6E-10 5.7E-15 102.7 15.1 175 202-445 54-228 (257)
85 PRK10370 formate-dependent nit 99.2 5.2E-10 1.1E-14 101.4 16.9 122 348-531 52-176 (198)
86 PRK15179 Vi polysaccharide bio 99.2 5.4E-10 1.2E-14 119.0 19.4 138 288-449 81-218 (694)
87 KOG0548|consensus 99.2 1.1E-09 2.4E-14 107.6 19.7 186 213-451 255-458 (539)
88 PF13424 TPR_12: Tetratricopep 99.2 1.3E-10 2.8E-15 88.6 10.0 77 331-408 1-77 (78)
89 PRK14720 transcript cleavage f 99.2 1.3E-09 2.9E-14 116.8 21.1 250 207-529 23-284 (906)
90 KOG0550|consensus 99.2 7.4E-10 1.6E-14 105.3 16.8 183 212-450 166-352 (486)
91 PLN03081 pentatricopeptide (PP 99.2 1.4E-09 3.1E-14 119.0 21.2 196 295-524 292-487 (697)
92 PRK14574 hmsH outer membrane p 99.2 9.7E-09 2.1E-13 111.5 26.9 311 197-533 84-450 (822)
93 PF13525 YfiO: Outer membrane 99.2 8.1E-09 1.8E-13 94.3 21.8 170 214-439 4-198 (203)
94 PF12569 NARP1: NMDA receptor- 99.2 9.4E-09 2E-13 105.7 24.1 142 376-533 193-339 (517)
95 PF13424 TPR_12: Tetratricopep 99.2 2.9E-10 6.3E-15 86.6 9.9 78 289-367 1-78 (78)
96 KOG1174|consensus 99.1 2E-09 4.2E-14 102.3 15.9 267 195-508 246-514 (564)
97 PF13525 YfiO: Outer membrane 99.1 1.4E-08 3E-13 92.8 21.3 170 292-519 4-198 (203)
98 COG5010 TadD Flp pilus assembl 99.1 1.5E-09 3.3E-14 97.9 13.9 136 288-448 62-197 (257)
99 PRK10866 outer membrane biogen 99.1 2.4E-08 5.2E-13 93.5 22.6 175 215-445 32-238 (243)
100 KOG1156|consensus 99.1 1.5E-07 3.3E-12 94.7 29.1 301 199-533 59-439 (700)
101 PRK15363 pathogenicity island 99.1 1.4E-09 3E-14 91.8 12.5 102 332-449 32-133 (157)
102 CHL00033 ycf3 photosystem I as 99.1 2.7E-09 5.8E-14 94.6 15.3 119 288-419 30-155 (168)
103 TIGR02552 LcrH_SycD type III s 99.1 1.2E-09 2.6E-14 93.1 12.4 115 356-532 4-118 (135)
104 TIGR02552 LcrH_SycD type III s 99.1 1.2E-09 2.6E-14 93.2 12.2 115 314-452 4-118 (135)
105 KOG0553|consensus 99.1 1.5E-09 3.2E-14 99.8 13.0 123 290-436 78-200 (304)
106 KOG0495|consensus 99.1 8.5E-08 1.8E-12 96.3 25.9 208 286-530 509-716 (913)
107 PRK15363 pathogenicity island 99.1 2.2E-09 4.7E-14 90.6 12.7 102 374-529 32-133 (157)
108 PRK10866 outer membrane biogen 99.1 5E-08 1.1E-12 91.3 23.2 189 292-524 31-237 (243)
109 PLN03077 Protein ECB2; Provisi 99.1 1.1E-08 2.4E-13 114.8 22.2 196 295-529 526-721 (857)
110 PRK14720 transcript cleavage f 99.1 4.4E-09 9.5E-14 112.9 17.8 225 286-535 24-259 (906)
111 CHL00033 ycf3 photosystem I as 99.1 6E-09 1.3E-13 92.4 15.3 104 331-447 31-141 (168)
112 KOG1156|consensus 99.0 4.6E-08 1E-12 98.3 22.5 195 288-510 70-264 (700)
113 KOG2376|consensus 99.0 1E-06 2.2E-11 88.0 31.1 301 212-531 107-490 (652)
114 KOG1127|consensus 99.0 3.2E-08 6.9E-13 103.7 21.5 217 288-531 487-703 (1238)
115 PRK02603 photosystem I assembl 99.0 4.7E-08 1E-12 87.0 19.8 106 329-447 29-134 (172)
116 KOG0553|consensus 99.0 6.5E-09 1.4E-13 95.6 14.3 124 211-394 77-200 (304)
117 KOG3060|consensus 99.0 1E-07 2.2E-12 85.4 21.2 188 289-512 48-238 (289)
118 KOG1128|consensus 99.0 6.8E-09 1.5E-13 105.6 15.1 218 211-486 394-616 (777)
119 KOG3060|consensus 99.0 1.5E-07 3.2E-12 84.4 21.2 171 212-450 49-222 (289)
120 PLN03077 Protein ECB2; Provisi 99.0 4.4E-08 9.6E-13 110.0 22.6 195 292-525 423-651 (857)
121 PF09976 TPR_21: Tetratricopep 99.0 4.2E-08 9.1E-13 84.6 17.2 131 297-446 15-145 (145)
122 KOG4162|consensus 99.0 1.5E-07 3.2E-12 96.6 23.1 301 212-531 390-752 (799)
123 PF09976 TPR_21: Tetratricopep 98.9 6.9E-08 1.5E-12 83.2 17.0 105 286-404 41-145 (145)
124 PF12569 NARP1: NMDA receptor- 98.9 1.1E-06 2.3E-11 90.7 27.8 270 197-492 20-340 (517)
125 COG1729 Uncharacterized protei 98.9 2.7E-07 5.8E-12 84.7 20.6 102 218-365 144-245 (262)
126 KOG1127|consensus 98.9 8.8E-08 1.9E-12 100.5 19.1 183 288-492 521-706 (1238)
127 PRK02603 photosystem I assembl 98.9 7.4E-08 1.6E-12 85.7 16.3 114 286-412 28-148 (172)
128 KOG2376|consensus 98.9 1.9E-06 4.1E-11 86.1 26.9 145 297-452 83-257 (652)
129 TIGR02795 tol_pal_ybgF tol-pal 98.9 2.6E-08 5.7E-13 82.6 11.9 103 294-406 3-105 (119)
130 TIGR02795 tol_pal_ybgF tol-pal 98.9 4.3E-08 9.4E-13 81.2 13.1 105 215-365 2-106 (119)
131 COG3071 HemY Uncharacterized e 98.9 1.5E-06 3.3E-11 83.0 24.6 212 295-530 120-392 (400)
132 KOG4340|consensus 98.9 1.6E-07 3.5E-12 85.9 17.0 178 204-451 33-210 (459)
133 PLN03088 SGT1, suppressor of 98.8 3.3E-08 7.2E-13 98.3 12.9 113 296-432 5-117 (356)
134 COG4783 Putative Zn-dependent 98.8 4E-07 8.7E-12 89.2 18.2 152 290-486 303-454 (484)
135 PLN03088 SGT1, suppressor of 98.8 8.6E-08 1.9E-12 95.4 14.0 98 338-451 5-102 (356)
136 PF12895 Apc3: Anaphase-promot 98.8 5.8E-08 1.3E-12 75.0 9.6 83 348-445 2-84 (84)
137 KOG3785|consensus 98.7 1.3E-06 2.7E-11 82.0 19.1 158 213-432 55-232 (557)
138 PF13414 TPR_11: TPR repeat; P 98.7 5.4E-08 1.2E-12 72.0 8.4 66 377-450 3-69 (69)
139 PF12688 TPR_5: Tetratrico pep 98.7 3.1E-07 6.6E-12 75.2 13.5 102 216-363 2-103 (120)
140 KOG1585|consensus 98.7 1.4E-05 3.1E-10 71.4 24.5 193 211-448 27-219 (308)
141 cd00189 TPR Tetratricopeptide 98.7 7.1E-08 1.5E-12 75.7 9.3 97 337-449 2-98 (100)
142 PF12688 TPR_5: Tetratrico pep 98.7 4.4E-07 9.4E-12 74.3 13.8 102 294-405 2-103 (120)
143 KOG2047|consensus 98.7 3.6E-06 7.8E-11 84.8 22.7 213 290-528 384-615 (835)
144 KOG1839|consensus 98.7 4E-07 8.6E-12 99.1 16.9 200 214-450 931-1130(1236)
145 PF12895 Apc3: Anaphase-promot 98.7 1.6E-07 3.4E-12 72.5 10.2 83 306-403 2-84 (84)
146 KOG1586|consensus 98.7 7.2E-06 1.6E-10 72.8 21.2 157 287-450 28-185 (288)
147 KOG0543|consensus 98.7 4.4E-07 9.4E-12 87.3 14.6 143 292-450 207-357 (397)
148 cd00189 TPR Tetratricopeptide 98.7 1.6E-07 3.5E-12 73.6 9.9 98 379-530 2-99 (100)
149 PF13414 TPR_11: TPR repeat; P 98.7 1.4E-07 3E-12 69.8 8.6 64 335-406 3-67 (69)
150 KOG1915|consensus 98.7 0.0001 2.2E-09 72.1 29.8 305 205-527 97-499 (677)
151 COG4783 Putative Zn-dependent 98.7 1.2E-06 2.7E-11 85.9 16.9 153 212-449 303-455 (484)
152 COG3071 HemY Uncharacterized e 98.7 2.1E-05 4.6E-10 75.4 24.6 217 215-487 118-391 (400)
153 PF04733 Coatomer_E: Coatomer 98.7 8.5E-08 1.9E-12 92.0 8.8 237 210-532 30-269 (290)
154 PRK10803 tol-pal system protei 98.6 6.8E-07 1.5E-11 84.3 14.5 103 294-406 143-246 (263)
155 KOG1128|consensus 98.6 2.5E-07 5.4E-12 94.4 12.2 200 211-451 420-619 (777)
156 COG4785 NlpI Lipoprotein NlpI, 98.6 2.5E-06 5.3E-11 74.8 16.1 207 286-528 58-266 (297)
157 KOG1915|consensus 98.6 1.3E-05 2.7E-10 78.2 21.5 254 204-533 311-590 (677)
158 KOG4340|consensus 98.6 3.7E-06 7.9E-11 77.2 16.4 170 288-529 39-208 (459)
159 COG4105 ComL DNA uptake lipopr 98.6 3.4E-05 7.3E-10 70.4 22.0 186 292-532 33-237 (254)
160 KOG0543|consensus 98.5 2.4E-06 5.2E-11 82.3 14.9 108 335-450 208-322 (397)
161 KOG1839|consensus 98.5 2E-06 4.4E-11 93.7 15.8 200 292-530 931-1130(1236)
162 KOG3785|consensus 98.5 3.5E-06 7.7E-11 79.1 15.1 202 224-512 31-232 (557)
163 KOG2047|consensus 98.5 3E-05 6.5E-10 78.4 22.1 149 289-451 421-582 (835)
164 PF13432 TPR_16: Tetratricopep 98.5 3.7E-07 8E-12 66.6 6.6 64 381-452 1-64 (65)
165 PRK10153 DNA-binding transcrip 98.5 6E-06 1.3E-10 85.8 17.7 133 215-406 339-482 (517)
166 COG4105 ComL DNA uptake lipopr 98.5 5E-05 1.1E-09 69.3 21.1 176 215-446 34-231 (254)
167 PRK10153 DNA-binding transcrip 98.5 3.4E-06 7.4E-11 87.6 15.4 138 292-452 338-486 (517)
168 KOG1070|consensus 98.5 2.6E-05 5.6E-10 85.2 21.8 260 198-529 1441-1701(1710)
169 PF13432 TPR_16: Tetratricopep 98.5 7.5E-07 1.6E-11 64.9 7.4 63 424-532 2-64 (65)
170 PF04733 Coatomer_E: Coatomer 98.4 1.9E-06 4.2E-11 82.7 11.9 165 214-451 101-268 (290)
171 KOG1585|consensus 98.4 0.00015 3.2E-09 65.1 22.2 235 286-532 24-260 (308)
172 COG1729 Uncharacterized protei 98.4 2.3E-06 4.9E-11 78.7 10.9 105 338-452 144-248 (262)
173 PRK15331 chaperone protein Sic 98.4 3E-06 6.5E-11 72.1 10.0 102 331-448 33-134 (165)
174 KOG4555|consensus 98.4 4.3E-05 9.2E-10 61.5 15.7 102 335-448 43-144 (175)
175 KOG1586|consensus 98.4 0.00029 6.3E-09 62.9 22.3 195 212-451 31-227 (288)
176 PRK11906 transcriptional regul 98.4 3.3E-05 7.1E-10 76.5 18.2 133 287-444 289-432 (458)
177 KOG4555|consensus 98.4 4.3E-05 9.2E-10 61.5 15.4 102 293-406 43-144 (175)
178 PRK15331 chaperone protein Sic 98.3 4.1E-06 8.9E-11 71.3 10.1 101 373-485 33-133 (165)
179 COG0457 NrfG FOG: TPR repeat [ 98.3 0.0003 6.5E-09 64.9 24.1 173 215-450 59-233 (291)
180 KOG2300|consensus 98.3 0.00056 1.2E-08 67.3 24.8 253 226-523 286-551 (629)
181 COG4235 Cytochrome c biogenesi 98.3 1.3E-05 2.8E-10 74.7 12.5 107 331-453 152-261 (287)
182 COG4235 Cytochrome c biogenesi 98.3 1.6E-05 3.5E-10 74.1 13.1 106 373-532 152-260 (287)
183 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 1.4E-05 3.1E-10 79.4 13.4 120 299-445 175-294 (395)
184 PRK11906 transcriptional regul 98.3 4.7E-05 1E-09 75.5 16.7 136 295-451 257-404 (458)
185 COG2909 MalT ATP-dependent tra 98.2 0.0022 4.8E-08 68.1 29.4 304 212-533 344-652 (894)
186 KOG2796|consensus 98.2 0.0017 3.7E-08 59.1 24.4 145 292-453 176-320 (366)
187 KOG4234|consensus 98.2 2.7E-05 5.9E-10 67.5 12.3 122 293-433 95-216 (271)
188 KOG3617|consensus 98.2 0.0003 6.4E-09 73.3 21.7 135 311-448 837-996 (1416)
189 PF13512 TPR_18: Tetratricopep 98.2 3.1E-05 6.7E-10 64.5 12.2 109 335-453 10-133 (142)
190 PF13512 TPR_18: Tetratricopep 98.2 2.9E-05 6.2E-10 64.7 11.9 105 292-406 9-128 (142)
191 COG4785 NlpI Lipoprotein NlpI, 98.2 6.5E-05 1.4E-09 66.1 14.5 104 208-363 58-161 (297)
192 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 3.7E-05 8E-10 76.5 14.7 121 220-403 174-294 (395)
193 PF08631 SPO22: Meiosis protei 98.1 0.0031 6.7E-08 60.7 26.4 256 225-527 3-274 (278)
194 KOG3617|consensus 98.1 0.0043 9.4E-08 65.0 26.7 240 288-527 853-1173(1416)
195 KOG4234|consensus 98.1 0.00012 2.6E-09 63.6 13.2 105 214-365 94-198 (271)
196 PLN03098 LPA1 LOW PSII ACCUMUL 98.1 1.2E-05 2.5E-10 79.5 8.1 68 373-448 71-141 (453)
197 COG4700 Uncharacterized protei 98.1 0.0005 1.1E-08 59.2 16.5 133 295-449 91-223 (251)
198 KOG2300|consensus 98.0 0.00063 1.4E-08 67.0 19.3 196 216-453 324-519 (629)
199 COG4700 Uncharacterized protei 98.0 0.00041 9E-09 59.7 15.3 139 213-409 87-225 (251)
200 PF13371 TPR_9: Tetratricopept 98.0 2.8E-05 6.1E-10 58.0 7.6 58 341-406 1-58 (73)
201 PF14559 TPR_19: Tetratricopep 98.0 1.3E-05 2.8E-10 58.8 5.4 66 346-427 2-67 (68)
202 PLN03098 LPA1 LOW PSII ACCUMUL 98.0 2.8E-05 6E-10 76.9 9.0 71 331-406 71-141 (453)
203 PF10345 Cohesin_load: Cohesin 98.0 0.038 8.1E-07 59.6 33.8 310 212-528 56-433 (608)
204 PF13371 TPR_9: Tetratricopept 98.0 2.2E-05 4.9E-10 58.5 6.5 62 383-452 1-62 (73)
205 KOG3081|consensus 98.0 0.0012 2.6E-08 60.3 18.3 160 213-447 106-269 (299)
206 COG2909 MalT ATP-dependent tra 98.0 0.003 6.4E-08 67.1 23.8 267 214-526 414-686 (894)
207 PF14559 TPR_19: Tetratricopep 98.0 2.5E-05 5.5E-10 57.3 6.5 56 388-451 2-57 (68)
208 COG0457 NrfG FOG: TPR repeat [ 98.0 0.0014 3E-08 60.4 19.8 177 210-451 90-268 (291)
209 COG3898 Uncharacterized membra 97.9 0.012 2.6E-07 56.7 25.1 170 218-450 123-294 (531)
210 KOG2796|consensus 97.9 0.00038 8.2E-09 63.2 13.7 127 288-429 207-333 (366)
211 KOG2471|consensus 97.9 0.00047 1E-08 67.8 15.0 273 213-530 238-650 (696)
212 KOG4648|consensus 97.8 7.2E-05 1.6E-09 70.2 8.3 95 296-406 100-194 (536)
213 PF13281 DUF4071: Domain of un 97.8 0.0037 8E-08 61.4 20.5 211 305-531 111-337 (374)
214 PF13374 TPR_10: Tetratricopep 97.8 5E-05 1.1E-09 49.5 5.0 41 335-375 2-42 (42)
215 KOG4648|consensus 97.8 5.1E-05 1.1E-09 71.2 6.7 98 338-451 100-197 (536)
216 KOG2610|consensus 97.8 0.0029 6.2E-08 59.7 17.6 143 288-446 132-274 (491)
217 KOG4642|consensus 97.8 9.4E-05 2E-09 66.1 7.6 108 377-538 10-117 (284)
218 KOG3081|consensus 97.7 0.0046 1E-07 56.6 18.2 127 294-451 109-239 (299)
219 KOG2610|consensus 97.7 0.001 2.2E-08 62.5 14.1 167 221-405 109-275 (491)
220 KOG3616|consensus 97.7 0.0036 7.9E-08 64.6 18.8 81 337-442 767-847 (1636)
221 KOG4642|consensus 97.7 0.00013 2.9E-09 65.1 7.5 103 337-455 12-114 (284)
222 PF10345 Cohesin_load: Cohesin 97.7 0.13 2.8E-06 55.6 32.2 238 288-533 54-335 (608)
223 KOG1070|consensus 97.7 0.0036 7.8E-08 69.2 19.1 212 288-529 1453-1664(1710)
224 KOG1464|consensus 97.7 0.0032 6.9E-08 57.6 15.8 241 228-513 40-286 (440)
225 PF13374 TPR_10: Tetratricopep 97.6 0.00012 2.6E-09 47.6 5.0 41 377-417 2-42 (42)
226 COG2976 Uncharacterized protei 97.6 0.013 2.7E-07 51.4 18.3 153 217-406 33-188 (207)
227 PF06552 TOM20_plant: Plant sp 97.6 0.00058 1.3E-08 58.9 9.8 93 393-532 7-113 (186)
228 PF10300 DUF3808: Protein of u 97.6 0.0028 6E-08 65.6 16.9 178 289-531 188-379 (468)
229 PF10300 DUF3808: Protein of u 97.5 0.0052 1.1E-07 63.6 17.6 126 286-422 260-392 (468)
230 PF10602 RPN7: 26S proteasome 97.4 0.013 2.9E-07 51.9 16.7 130 310-448 13-142 (177)
231 PF06552 TOM20_plant: Plant sp 97.4 0.0017 3.7E-08 56.0 10.5 84 351-450 7-111 (186)
232 KOG2471|consensus 97.4 0.0093 2E-07 59.1 16.7 132 291-431 238-381 (696)
233 KOG1464|consensus 97.4 0.027 5.9E-07 51.7 18.1 236 193-433 39-286 (440)
234 KOG1463|consensus 97.4 0.061 1.3E-06 51.1 20.7 143 294-442 129-272 (411)
235 KOG3616|consensus 97.4 0.03 6.4E-07 58.2 19.9 164 335-522 661-847 (1636)
236 KOG0545|consensus 97.4 0.0048 1E-07 55.7 12.7 118 214-365 177-294 (329)
237 PF03704 BTAD: Bacterial trans 97.4 0.014 3.1E-07 50.0 15.8 130 214-373 5-134 (146)
238 COG2976 Uncharacterized protei 97.3 0.026 5.7E-07 49.4 16.7 101 335-449 89-189 (207)
239 PF04184 ST7: ST7 protein; In 97.3 0.043 9.3E-07 55.0 20.3 133 220-404 173-322 (539)
240 PF13281 DUF4071: Domain of un 97.3 0.14 3.1E-06 50.5 23.5 206 227-449 111-335 (374)
241 PF03704 BTAD: Bacterial trans 97.3 0.012 2.6E-07 50.6 14.6 109 297-413 10-132 (146)
242 PF04184 ST7: ST7 protein; In 97.3 0.033 7.3E-07 55.8 19.0 129 301-445 176-321 (539)
243 PF09986 DUF2225: Uncharacteri 97.2 0.006 1.3E-07 55.7 12.7 103 345-448 87-194 (214)
244 PF02259 FAT: FAT domain; Int 97.2 0.27 5.9E-06 49.0 27.0 91 311-405 120-212 (352)
245 KOG0545|consensus 97.2 0.006 1.3E-07 55.1 11.9 114 292-421 177-300 (329)
246 COG5159 RPN6 26S proteasome re 97.2 0.027 5.8E-07 52.1 16.2 227 219-488 7-237 (421)
247 PF12968 DUF3856: Domain of Un 97.2 0.051 1.1E-06 43.4 15.4 120 292-412 6-135 (144)
248 PF13431 TPR_17: Tetratricopep 97.2 0.00028 6.1E-09 43.4 2.3 33 399-439 1-33 (34)
249 PF00515 TPR_1: Tetratricopept 97.2 0.00097 2.1E-08 41.0 4.8 33 499-531 1-33 (34)
250 COG3898 Uncharacterized membra 97.2 0.26 5.6E-06 48.0 23.4 241 218-536 157-400 (531)
251 PF13428 TPR_14: Tetratricopep 97.2 0.00069 1.5E-08 44.6 4.3 42 378-427 2-43 (44)
252 PF09986 DUF2225: Uncharacteri 97.1 0.016 3.5E-07 53.0 14.3 100 306-406 90-194 (214)
253 PF07719 TPR_2: Tetratricopept 97.1 0.0011 2.4E-08 40.7 4.8 33 499-531 1-33 (34)
254 PF05843 Suf: Suppressor of fo 97.1 0.02 4.3E-07 55.1 15.5 136 295-451 3-139 (280)
255 KOG0551|consensus 97.1 0.033 7.1E-07 52.8 16.0 108 331-450 77-184 (390)
256 PF10602 RPN7: 26S proteasome 97.1 0.029 6.3E-07 49.7 15.1 112 288-406 31-142 (177)
257 KOG0551|consensus 97.1 0.0085 1.8E-07 56.6 11.6 108 288-407 76-183 (390)
258 PF13176 TPR_7: Tetratricopept 97.0 0.0015 3.3E-08 40.8 4.6 31 501-531 1-31 (36)
259 PF00515 TPR_1: Tetratricopept 97.0 0.0018 3.8E-08 39.8 4.9 30 377-406 1-30 (34)
260 KOG2053|consensus 97.0 0.021 4.5E-07 60.8 15.1 111 305-440 21-131 (932)
261 PF12862 Apc5: Anaphase-promot 97.0 0.018 3.9E-07 45.1 11.5 82 303-386 8-90 (94)
262 PF12862 Apc5: Anaphase-promot 97.0 0.021 4.6E-07 44.7 11.7 82 345-428 8-90 (94)
263 PF12968 DUF3856: Domain of Un 97.0 0.062 1.4E-06 42.9 13.8 123 216-370 8-135 (144)
264 KOG2053|consensus 96.9 0.19 4E-06 53.9 21.2 182 199-446 27-217 (932)
265 COG5159 RPN6 26S proteasome re 96.9 0.24 5.2E-06 46.1 19.1 222 298-530 8-237 (421)
266 PF02259 FAT: FAT domain; Int 96.9 0.56 1.2E-05 46.7 24.4 142 375-532 144-291 (352)
267 PF13428 TPR_14: Tetratricopep 96.9 0.0016 3.4E-08 42.9 3.9 42 336-385 2-43 (44)
268 KOG1463|consensus 96.9 0.24 5.2E-06 47.3 19.3 147 294-447 49-196 (411)
269 PF07719 TPR_2: Tetratricopept 96.8 0.0031 6.7E-08 38.6 4.8 33 419-451 1-33 (34)
270 PF13176 TPR_7: Tetratricopept 96.8 0.0033 7.1E-08 39.2 4.6 31 421-451 1-31 (36)
271 PF13431 TPR_17: Tetratricopep 96.7 0.0012 2.7E-08 40.5 2.4 32 480-519 2-33 (34)
272 PF13181 TPR_8: Tetratricopept 96.7 0.0043 9.3E-08 38.0 4.9 32 500-531 2-33 (34)
273 PF05843 Suf: Suppressor of fo 96.7 0.022 4.8E-07 54.8 11.7 134 217-407 3-137 (280)
274 PF11817 Foie-gras_1: Foie gra 96.5 0.71 1.5E-05 43.5 22.1 95 348-446 151-245 (247)
275 KOG1550|consensus 96.5 0.11 2.4E-06 55.2 16.8 135 213-406 242-393 (552)
276 PF08631 SPO22: Meiosis protei 96.5 0.89 1.9E-05 43.7 22.2 222 213-447 33-274 (278)
277 KOG0985|consensus 96.4 0.31 6.7E-06 53.0 18.8 203 292-527 1103-1340(1666)
278 PF13174 TPR_6: Tetratricopept 96.3 0.0073 1.6E-07 36.6 3.9 32 500-531 1-32 (33)
279 COG3118 Thioredoxin domain-con 96.3 0.28 6E-06 46.2 15.7 129 296-448 137-265 (304)
280 COG0790 FOG: TPR repeat, SEL1 96.2 0.6 1.3E-05 45.2 19.1 115 291-433 107-236 (292)
281 COG0790 FOG: TPR repeat, SEL1 96.2 0.8 1.7E-05 44.4 19.9 128 294-448 74-220 (292)
282 PF13181 TPR_8: Tetratricopept 96.2 0.014 3E-07 35.7 4.8 31 420-450 2-32 (34)
283 KOG4322|consensus 96.2 1.5 3.3E-05 43.4 25.1 196 329-530 267-473 (482)
284 KOG2041|consensus 96.1 0.48 1E-05 49.5 17.7 86 330-443 791-876 (1189)
285 KOG3783|consensus 96.1 2 4.3E-05 43.9 22.2 188 292-531 302-523 (546)
286 PF00244 14-3-3: 14-3-3 protei 95.9 1.5 3.2E-05 40.9 21.6 58 393-450 142-200 (236)
287 COG5187 RPN7 26S proteasome re 95.9 1.4 3E-05 41.3 17.8 146 297-451 79-224 (412)
288 KOG4814|consensus 95.8 2.3 5E-05 44.3 20.8 103 217-365 356-458 (872)
289 PF13174 TPR_6: Tetratricopept 95.7 0.019 4.1E-07 34.7 3.9 32 420-451 1-32 (33)
290 KOG0376|consensus 95.7 0.0088 1.9E-07 59.5 3.5 99 338-452 7-105 (476)
291 KOG0376|consensus 95.7 0.013 2.7E-07 58.4 4.5 108 298-429 9-116 (476)
292 KOG4814|consensus 95.5 2.2 4.9E-05 44.3 19.5 106 335-450 354-459 (872)
293 COG3118 Thioredoxin domain-con 95.5 2.2 4.7E-05 40.4 18.0 164 214-443 133-296 (304)
294 COG4649 Uncharacterized protei 95.5 0.34 7.4E-06 41.7 11.6 149 343-527 47-195 (221)
295 PF04781 DUF627: Protein of un 95.2 0.27 5.9E-06 39.1 9.5 95 341-448 2-107 (111)
296 KOG2041|consensus 95.2 5.2 0.00011 42.2 21.6 35 287-321 790-824 (1189)
297 KOG1258|consensus 95.1 2.5 5.5E-05 43.8 18.7 194 288-513 292-489 (577)
298 PF10579 Rapsyn_N: Rapsyn N-te 95.1 0.4 8.7E-06 35.4 9.5 69 337-410 8-76 (80)
299 PF04910 Tcf25: Transcriptiona 95.1 3.2 7E-05 41.4 19.2 155 288-451 35-225 (360)
300 KOG1550|consensus 94.9 3 6.6E-05 44.4 19.7 196 293-529 325-539 (552)
301 KOG1308|consensus 94.9 0.0086 1.9E-07 56.8 0.5 88 345-448 124-211 (377)
302 PF10579 Rapsyn_N: Rapsyn N-te 94.8 0.55 1.2E-05 34.7 9.4 70 294-368 7-76 (80)
303 KOG1308|consensus 94.7 0.023 5E-07 54.1 2.9 126 383-529 120-245 (377)
304 PF11817 Foie-gras_1: Foie gra 94.7 0.78 1.7E-05 43.2 13.2 73 288-362 173-245 (247)
305 PF00244 14-3-3: 14-3-3 protei 94.6 2.3 5E-05 39.6 15.9 59 473-531 142-201 (236)
306 PF08424 NRDE-2: NRDE-2, neces 94.6 3.6 7.9E-05 40.4 18.1 112 290-406 62-183 (321)
307 KOG1538|consensus 94.6 2 4.4E-05 44.7 16.2 125 298-445 637-773 (1081)
308 PF09613 HrpB1_HrpK: Bacterial 94.6 0.46 9.9E-06 40.7 10.1 90 331-436 6-95 (160)
309 PF12739 TRAPPC-Trs85: ER-Golg 94.5 5.9 0.00013 40.5 20.0 181 217-454 210-405 (414)
310 PF04781 DUF627: Protein of un 94.5 0.85 1.9E-05 36.3 10.6 95 221-364 2-107 (111)
311 COG4649 Uncharacterized protei 94.4 3.1 6.7E-05 36.1 16.1 99 294-405 95-195 (221)
312 PF04910 Tcf25: Transcriptiona 94.3 2.3 5E-05 42.4 16.1 173 209-406 34-222 (360)
313 KOG4322|consensus 94.3 3.6 7.8E-05 40.9 16.6 158 288-450 308-473 (482)
314 KOG0687|consensus 93.9 5.1 0.00011 38.4 16.1 133 310-451 81-213 (393)
315 smart00028 TPR Tetratricopepti 93.7 0.084 1.8E-06 30.9 3.1 31 500-530 2-32 (34)
316 KOG1914|consensus 93.7 5.4 0.00012 40.9 16.9 165 338-528 289-464 (656)
317 PF10516 SHNi-TPR: SHNi-TPR; 93.6 0.21 4.7E-06 31.3 4.6 35 378-412 2-36 (38)
318 PF14561 TPR_20: Tetratricopep 93.5 0.94 2E-05 35.0 9.1 82 397-509 8-89 (90)
319 PF10516 SHNi-TPR: SHNi-TPR; 93.4 0.25 5.4E-06 31.0 4.7 35 336-370 2-36 (38)
320 PF12739 TRAPPC-Trs85: ER-Golg 93.4 7.4 0.00016 39.8 18.2 178 294-488 209-401 (414)
321 KOG0686|consensus 93.2 2.3 4.9E-05 41.9 13.1 107 333-446 148-256 (466)
322 PF08424 NRDE-2: NRDE-2, neces 93.1 8.9 0.00019 37.7 17.8 146 288-449 14-184 (321)
323 KOG1538|consensus 93.1 12 0.00027 39.2 18.6 29 418-446 803-831 (1081)
324 KOG4507|consensus 93.1 0.1 2.2E-06 53.2 4.0 112 296-430 610-721 (886)
325 smart00028 TPR Tetratricopepti 92.9 0.14 3.1E-06 29.8 3.2 30 420-449 2-31 (34)
326 smart00101 14_3_3 14-3-3 homol 92.8 8.2 0.00018 36.0 22.2 57 393-449 144-201 (244)
327 PF04190 DUF410: Protein of un 92.8 9 0.0002 36.3 21.3 220 288-514 5-243 (260)
328 KOG2581|consensus 92.7 11 0.00025 37.2 20.5 145 300-451 133-279 (493)
329 PF09613 HrpB1_HrpK: Bacterial 92.7 1.2 2.5E-05 38.3 9.3 91 288-394 5-95 (160)
330 KOG1258|consensus 92.5 15 0.00033 38.3 21.7 204 308-532 270-474 (577)
331 PF14853 Fis1_TPR_C: Fis1 C-te 92.2 0.74 1.6E-05 31.4 6.1 39 378-424 2-40 (53)
332 PF14853 Fis1_TPR_C: Fis1 C-te 92.2 0.36 7.7E-06 33.0 4.6 34 500-533 2-35 (53)
333 KOG3783|consensus 92.2 16 0.00034 37.7 18.3 76 372-448 444-520 (546)
334 PRK13184 pknD serine/threonine 92.0 14 0.00029 41.7 18.9 140 298-451 480-623 (932)
335 TIGR02561 HrpB1_HrpK type III 91.9 1.3 2.9E-05 37.3 8.5 89 332-436 7-95 (153)
336 KOG0687|consensus 91.7 12 0.00027 35.9 15.5 114 289-409 100-213 (393)
337 PF14561 TPR_20: Tetratricopep 91.7 0.86 1.9E-05 35.2 6.8 83 200-303 7-89 (90)
338 KOG0985|consensus 91.5 27 0.00058 39.0 23.1 207 214-447 1103-1340(1666)
339 KOG4507|consensus 91.4 1.8 4E-05 44.5 10.3 100 293-406 212-312 (886)
340 PRK10941 hypothetical protein; 90.9 2.1 4.6E-05 40.6 10.0 81 333-426 179-259 (269)
341 KOG0686|consensus 90.6 5.5 0.00012 39.4 12.4 107 290-404 147-256 (466)
342 PF12325 TMF_TATA_bd: TATA ele 90.6 4.3 9.2E-05 33.1 10.0 59 79-137 11-69 (120)
343 PF11207 DUF2989: Protein of u 90.6 1.6 3.5E-05 38.9 8.2 79 350-440 121-199 (203)
344 PF15015 NYD-SP12_N: Spermatog 90.4 9.2 0.0002 38.0 13.7 109 294-410 177-295 (569)
345 COG5187 RPN7 26S proteasome re 90.1 17 0.00037 34.3 16.1 114 289-409 111-224 (412)
346 PF07721 TPR_4: Tetratricopept 89.8 0.44 9.6E-06 27.0 2.8 24 500-523 2-25 (26)
347 PF07721 TPR_4: Tetratricopept 89.7 0.45 9.7E-06 26.9 2.8 24 420-443 2-25 (26)
348 KOG2422|consensus 89.2 31 0.00067 36.0 17.3 152 288-450 279-450 (665)
349 KOG3824|consensus 89.1 0.83 1.8E-05 43.1 5.5 74 338-427 119-192 (472)
350 PRK10941 hypothetical protein; 89.1 2.2 4.7E-05 40.5 8.5 70 376-453 180-249 (269)
351 PF06156 DUF972: Protein of un 88.8 1.8 4E-05 34.5 6.5 49 85-133 9-57 (107)
352 PF15015 NYD-SP12_N: Spermatog 88.7 4.9 0.00011 39.8 10.5 96 342-445 183-288 (569)
353 PRK10884 SH3 domain-containing 88.6 7.2 0.00016 35.3 11.0 52 92-143 119-170 (206)
354 COG5107 RNA14 Pre-mRNA 3'-end 88.4 30 0.00065 34.9 16.3 175 332-529 299-496 (660)
355 PF10255 Paf67: RNA polymerase 88.1 2 4.4E-05 43.1 7.9 74 337-410 124-197 (404)
356 TIGR02561 HrpB1_HrpK type III 87.9 3.5 7.6E-05 34.9 7.9 90 289-394 6-95 (153)
357 KOG4521|consensus 87.3 38 0.00082 38.4 17.0 91 312-437 982-1072(1480)
358 KOG1497|consensus 87.1 29 0.00063 33.3 20.7 113 332-447 100-212 (399)
359 PRK13184 pknD serine/threonine 87.0 5 0.00011 45.0 10.9 82 290-378 509-590 (932)
360 KOG1914|consensus 86.7 43 0.00092 34.8 20.8 118 309-448 347-464 (656)
361 KOG2114|consensus 86.4 23 0.00051 38.5 14.6 49 316-365 350-398 (933)
362 COG3629 DnrI DNA-binding trans 86.3 15 0.00032 35.0 12.1 81 290-378 150-230 (280)
363 PF08626 TRAPPC9-Trs120: Trans 86.3 18 0.0004 42.5 15.5 156 290-449 239-475 (1185)
364 COG3629 DnrI DNA-binding trans 86.2 16 0.00034 34.8 12.2 76 333-416 151-226 (280)
365 KOG2561|consensus 86.1 33 0.00072 34.4 14.5 146 293-444 163-340 (568)
366 PF10952 DUF2753: Protein of u 86.0 17 0.00036 29.6 10.3 75 338-412 4-85 (140)
367 PF11207 DUF2989: Protein of u 85.1 12 0.00025 33.6 10.1 65 286-355 134-198 (203)
368 COG4976 Predicted methyltransf 84.8 1.3 2.9E-05 40.1 4.1 60 469-536 7-66 (287)
369 smart00101 14_3_3 14-3-3 homol 84.8 34 0.00074 31.9 19.0 57 473-529 144-201 (244)
370 PF10255 Paf67: RNA polymerase 84.7 5.3 0.00012 40.1 8.8 74 217-326 124-197 (404)
371 KOG0890|consensus 84.4 43 0.00093 41.1 16.8 122 287-426 1664-1796(2382)
372 COG4976 Predicted methyltransf 84.4 1.7 3.6E-05 39.4 4.6 62 386-455 4-65 (287)
373 KOG3364|consensus 84.4 12 0.00026 31.1 9.1 66 335-406 32-100 (149)
374 KOG2561|consensus 84.1 17 0.00037 36.4 11.6 120 216-368 164-300 (568)
375 KOG1310|consensus 83.6 5.6 0.00012 40.7 8.3 88 347-450 386-476 (758)
376 KOG4014|consensus 83.3 31 0.00068 30.3 13.2 192 289-533 30-238 (248)
377 PF10373 EST1_DNA_bind: Est1 D 82.9 2.7 5.9E-05 40.2 6.0 62 354-431 1-62 (278)
378 COG3947 Response regulator con 82.9 30 0.00065 32.9 12.1 76 335-418 279-354 (361)
379 PF09670 Cas_Cas02710: CRISPR- 82.8 56 0.0012 32.9 17.0 142 216-409 132-273 (379)
380 KOG3364|consensus 82.6 13 0.00028 30.9 8.6 70 290-365 29-101 (149)
381 TIGR03504 FimV_Cterm FimV C-te 82.6 4 8.6E-05 26.6 4.6 26 381-406 3-28 (44)
382 PF09670 Cas_Cas02710: CRISPR- 82.5 58 0.0013 32.8 16.8 143 378-534 132-276 (379)
383 PRK13169 DNA replication intia 82.2 6 0.00013 31.7 6.5 47 85-131 9-55 (110)
384 PF04053 Coatomer_WDAD: Coatom 82.1 17 0.00037 37.4 11.6 103 296-446 298-400 (443)
385 KOG3824|consensus 82.1 13 0.00028 35.4 9.5 64 382-453 121-184 (472)
386 PF10205 KLRAQ: Predicted coil 80.6 15 0.00033 28.8 7.9 55 96-150 3-57 (102)
387 TIGR03504 FimV_Cterm FimV C-te 80.6 4.7 0.0001 26.3 4.4 26 297-322 3-28 (44)
388 PF07720 TPR_3: Tetratricopept 80.6 6.5 0.00014 24.3 4.9 31 500-530 2-34 (36)
389 PRK10884 SH3 domain-containing 80.5 32 0.0007 31.2 11.4 99 22-136 79-177 (206)
390 PF08626 TRAPPC9-Trs120: Trans 79.7 1.4E+02 0.003 35.4 24.9 191 213-407 240-475 (1185)
391 KOG2581|consensus 79.6 70 0.0015 32.0 21.2 110 291-406 167-276 (493)
392 COG3947 Response regulator con 79.4 21 0.00045 33.9 9.8 79 293-379 279-357 (361)
393 PRK12798 chemotaxis protein; R 79.4 74 0.0016 32.1 21.1 196 194-450 93-288 (421)
394 PF12854 PPR_1: PPR repeat 79.0 3.6 7.9E-05 25.0 3.4 29 213-241 5-33 (34)
395 KOG2422|consensus 78.9 90 0.0019 32.8 16.9 175 306-488 251-450 (665)
396 KOG4196|consensus 78.5 7 0.00015 31.7 5.7 39 93-131 76-114 (135)
397 PF12854 PPR_1: PPR repeat 78.5 4.4 9.6E-05 24.6 3.7 27 418-444 6-32 (34)
398 KOG0963|consensus 78.5 95 0.002 32.8 15.2 116 27-152 240-360 (629)
399 PF08317 Spc7: Spc7 kinetochor 78.5 61 0.0013 31.9 13.7 34 92-125 217-250 (325)
400 PF07079 DUF1347: Protein of u 78.2 83 0.0018 32.0 27.0 143 215-365 6-158 (549)
401 PF10267 Tmemb_cc2: Predicted 78.2 53 0.0012 33.0 13.1 82 63-152 225-311 (395)
402 KOG3850|consensus 77.8 70 0.0015 31.5 13.0 93 38-152 262-359 (455)
403 PRK15180 Vi polysaccharide bio 77.6 5.8 0.00013 40.0 6.1 85 347-447 301-385 (831)
404 COG1340 Uncharacterized archae 77.5 68 0.0015 30.6 15.1 94 59-152 126-221 (294)
405 PF14988 DUF4515: Domain of un 76.8 59 0.0013 29.5 14.4 109 29-145 85-196 (206)
406 PF08311 Mad3_BUB1_I: Mad3/BUB 76.7 42 0.0009 27.7 10.4 86 349-446 40-126 (126)
407 PF09486 HrpB7: Bacterial type 76.6 49 0.0011 28.5 13.2 119 32-150 18-138 (158)
408 PF04053 Coatomer_WDAD: Coatom 76.3 67 0.0015 33.1 13.7 83 380-480 298-396 (443)
409 PF10858 DUF2659: Protein of u 76.3 50 0.0011 28.5 14.2 130 307-448 71-200 (220)
410 PF11414 Suppressor_APC: Adeno 76.2 8.7 0.00019 29.1 5.4 44 88-131 4-47 (84)
411 PF07079 DUF1347: Protein of u 76.2 95 0.0021 31.6 25.2 57 337-402 462-520 (549)
412 PF04190 DUF410: Protein of un 76.2 72 0.0016 30.2 24.4 217 211-434 6-243 (260)
413 KOG4563|consensus 76.1 9.9 0.00022 37.0 7.0 67 335-401 41-107 (400)
414 KOG4807|consensus 74.9 23 0.0005 34.6 9.1 18 30-47 379-396 (593)
415 KOG2114|consensus 74.9 91 0.002 34.2 14.2 43 204-246 357-399 (933)
416 KOG4563|consensus 74.6 8.7 0.00019 37.4 6.2 67 293-359 41-107 (400)
417 KOG1310|consensus 74.6 20 0.00043 36.9 8.9 104 209-364 368-474 (758)
418 PF08311 Mad3_BUB1_I: Mad3/BUB 74.2 20 0.00044 29.6 7.8 63 288-362 64-126 (126)
419 smart00338 BRLZ basic region l 73.5 10 0.00023 27.0 5.2 37 85-121 27-63 (65)
420 PF04728 LPP: Lipoprotein leuc 72.8 25 0.00054 24.2 6.3 44 93-136 5-48 (56)
421 KOG3024|consensus 72.7 89 0.0019 29.7 13.3 131 288-444 21-152 (312)
422 PF07888 CALCOCO1: Calcium bin 72.2 1.3E+02 0.0028 31.7 14.3 54 91-144 262-315 (546)
423 PF03904 DUF334: Domain of unk 72.0 69 0.0015 29.2 10.8 49 87-145 100-150 (230)
424 PF06156 DUF972: Protein of un 71.8 24 0.00053 28.2 7.2 52 69-126 6-57 (107)
425 cd02682 MIT_AAA_Arch MIT: doma 71.4 24 0.00052 26.1 6.6 36 376-411 5-40 (75)
426 PF12325 TMF_TATA_bd: TATA ele 71.3 41 0.00089 27.5 8.6 56 88-143 34-99 (120)
427 COG3914 Spy Predicted O-linked 70.8 50 0.0011 34.6 10.9 66 370-444 61-126 (620)
428 TIGR02449 conserved hypothetic 70.7 36 0.00078 24.3 7.1 41 88-128 11-51 (65)
429 KOG4014|consensus 70.7 76 0.0016 28.1 12.0 63 292-364 67-141 (248)
430 PF07163 Pex26: Pex26 protein; 70.7 99 0.0021 29.4 13.5 144 213-401 33-182 (309)
431 PF05053 Menin: Menin; InterP 70.2 86 0.0019 32.8 12.3 56 351-409 295-350 (618)
432 PF07720 TPR_3: Tetratricopept 69.6 18 0.00039 22.3 4.8 29 420-448 2-32 (36)
433 PF08317 Spc7: Spc7 kinetochor 69.1 91 0.002 30.7 12.4 34 92-125 231-264 (325)
434 KOG3807|consensus 69.1 1.2E+02 0.0025 29.6 14.7 122 205-353 208-329 (556)
435 KOG0508|consensus 68.9 2.9 6.3E-05 41.9 1.8 73 317-389 319-391 (615)
436 PF01535 PPR: PPR repeat; Int 68.8 8 0.00017 22.2 3.2 27 421-447 2-28 (31)
437 KOG3650|consensus 68.6 19 0.00041 27.5 5.6 48 60-114 53-100 (120)
438 PRK03918 chromosome segregatio 68.4 1.3E+02 0.0028 34.4 15.2 37 101-137 241-277 (880)
439 KOG4005|consensus 68.3 34 0.00073 31.0 8.0 58 71-134 90-147 (292)
440 PRK13169 DNA replication intia 68.2 30 0.00065 27.7 7.0 52 69-126 6-57 (110)
441 COG3914 Spy Predicted O-linked 68.0 60 0.0013 34.1 10.8 108 328-452 61-175 (620)
442 PRK11637 AmiB activator; Provi 67.8 83 0.0018 32.4 12.3 75 63-143 46-120 (428)
443 TIGR03752 conj_TIGR03752 integ 67.7 27 0.00058 35.6 8.2 50 85-134 60-109 (472)
444 PF13041 PPR_2: PPR repeat fam 67.7 28 0.0006 23.0 6.0 29 215-243 3-31 (50)
445 KOG0128|consensus 67.6 2E+02 0.0044 31.7 19.3 225 288-529 108-342 (881)
446 COG1747 Uncharacterized N-term 67.5 1.6E+02 0.0035 30.6 19.5 94 337-449 68-161 (711)
447 PF10373 EST1_DNA_bind: Est1 D 66.9 9 0.00019 36.6 4.8 45 396-448 1-45 (278)
448 PF08614 ATG16: Autophagy prot 66.7 54 0.0012 29.4 9.5 62 84-145 116-177 (194)
449 cd02681 MIT_calpain7_1 MIT: do 66.5 51 0.0011 24.5 8.4 33 377-409 6-38 (76)
450 PF10952 DUF2753: Protein of u 66.5 71 0.0015 26.1 10.2 73 296-368 4-83 (140)
451 KOG0508|consensus 66.1 4 8.7E-05 41.0 2.1 141 288-431 240-391 (615)
452 KOG2129|consensus 65.9 1.4E+02 0.0029 29.9 12.1 50 78-130 243-303 (552)
453 PF13041 PPR_2: PPR repeat fam 65.8 22 0.00047 23.5 5.2 30 377-406 3-32 (50)
454 PF14197 Cep57_CLD_2: Centroso 65.5 50 0.0011 24.0 8.8 59 86-144 7-65 (69)
455 PF04212 MIT: MIT (microtubule 65.5 48 0.001 23.8 8.0 34 377-410 5-38 (69)
456 PHA02537 M terminase endonucle 65.2 21 0.00046 32.9 6.5 104 428-533 92-212 (230)
457 PLN03188 kinesin-12 family pro 64.8 1.2E+02 0.0025 35.3 13.0 68 63-133 1120-1201(1320)
458 PF01535 PPR: PPR repeat; Int 64.8 11 0.00025 21.5 3.3 27 337-363 2-28 (31)
459 cd02682 MIT_AAA_Arch MIT: doma 64.6 44 0.00094 24.7 6.8 35 335-369 6-40 (75)
460 PRK15180 Vi polysaccharide bio 64.3 18 0.00038 36.7 6.1 128 304-455 300-427 (831)
461 TIGR00756 PPR pentatricopeptid 64.2 15 0.00032 21.5 3.9 27 421-447 2-28 (35)
462 KOG2908|consensus 64.1 1.5E+02 0.0032 29.0 16.8 101 224-363 84-185 (380)
463 cd02679 MIT_spastin MIT: domai 64.0 31 0.00066 25.8 6.0 38 375-412 6-43 (79)
464 PF07163 Pex26: Pex26 protein; 64.0 1.4E+02 0.003 28.5 14.1 138 292-443 34-182 (309)
465 PF06216 RTBV_P46: Rice tungro 63.9 20 0.00043 32.6 5.9 42 87-128 60-108 (389)
466 KOG2077|consensus 63.7 1.4E+02 0.003 31.2 12.1 105 94-244 318-424 (832)
467 COG4467 Regulator of replicati 63.5 25 0.00054 27.6 5.5 43 88-130 12-54 (114)
468 TIGR00756 PPR pentatricopeptid 63.3 16 0.00034 21.4 3.8 27 217-243 2-28 (35)
469 KOG0890|consensus 63.0 4E+02 0.0086 33.5 20.3 57 466-532 1679-1735(2382)
470 PRK09039 hypothetical protein; 62.8 1.7E+02 0.0036 29.1 13.2 120 27-146 44-178 (343)
471 KOG2396|consensus 62.5 32 0.00069 35.3 7.6 83 354-452 90-173 (568)
472 PF02183 HALZ: Homeobox associ 62.5 23 0.00051 23.2 4.5 33 96-128 10-42 (45)
473 PF06548 Kinesin-related: Kine 62.5 1.8E+02 0.004 29.5 13.1 76 63-141 350-439 (488)
474 PF05053 Menin: Menin; InterP 62.3 98 0.0021 32.4 11.0 93 419-533 257-352 (618)
475 PRK10132 hypothetical protein; 62.1 81 0.0018 25.3 8.5 88 30-123 6-94 (108)
476 COG3014 Uncharacterized protei 62.0 1.6E+02 0.0036 28.8 18.0 33 499-531 213-245 (449)
477 PHA02562 46 endonuclease subun 61.9 1.3E+02 0.0028 32.2 13.0 56 96-151 356-411 (562)
478 PF10858 DUF2659: Protein of u 61.7 1.1E+02 0.0023 26.5 16.1 105 296-406 96-200 (220)
479 KOG2908|consensus 61.5 1.7E+02 0.0036 28.7 17.8 95 344-441 84-179 (380)
480 PF05384 DegS: Sensor protein 61.4 1.1E+02 0.0023 26.5 13.3 121 23-144 14-137 (159)
481 PF00170 bZIP_1: bZIP transcri 61.2 37 0.0008 24.1 5.9 32 100-131 28-59 (64)
482 smart00787 Spc7 Spc7 kinetocho 61.1 1.7E+02 0.0036 28.6 14.4 78 63-140 178-260 (312)
483 smart00777 Mad3_BUB1_I Mad3/BU 61.0 70 0.0015 26.4 8.2 62 371-444 63-124 (125)
484 KOG3024|consensus 60.7 1.6E+02 0.0034 28.1 13.0 105 340-447 90-205 (312)
485 PF07106 TBPIP: Tat binding pr 60.5 27 0.00058 30.6 6.2 52 93-144 74-127 (169)
486 PF05377 FlaC_arch: Flagella a 60.3 40 0.00087 23.1 5.4 35 94-128 3-37 (55)
487 PF10226 DUF2216: Uncharacteri 60.1 1.2E+02 0.0027 26.7 12.8 28 92-119 49-76 (195)
488 KOG0964|consensus 59.7 1.6E+02 0.0034 33.1 12.4 110 25-134 702-821 (1200)
489 KOG4797|consensus 59.4 34 0.00073 26.8 5.5 38 84-121 52-90 (123)
490 KOG2396|consensus 58.7 1.1E+02 0.0023 31.7 10.4 50 307-364 119-169 (568)
491 smart00338 BRLZ basic region l 58.6 31 0.00067 24.5 5.2 34 99-132 27-60 (65)
492 PF10224 DUF2205: Predicted co 58.4 58 0.0013 24.4 6.5 41 63-110 16-56 (80)
493 PF13851 GAS: Growth-arrest sp 58.3 1.3E+02 0.0029 27.1 10.3 71 67-147 20-90 (201)
494 PF06148 COG2: COG (conserved 58.3 6.1 0.00013 33.1 1.7 102 21-142 12-113 (133)
495 KOG4279|consensus 58.3 57 0.0012 35.2 8.7 189 323-530 189-397 (1226)
496 PF13812 PPR_3: Pentatricopept 58.1 27 0.00058 20.4 4.2 28 420-447 2-29 (34)
497 COG3014 Uncharacterized protei 57.8 1.9E+02 0.0042 28.3 16.6 89 219-322 62-154 (449)
498 KOG2063|consensus 57.5 3.3E+02 0.0071 30.8 15.7 96 344-447 600-712 (877)
499 KOG1029|consensus 57.4 1.2E+02 0.0025 33.1 10.7 105 30-147 438-542 (1118)
500 PF09311 Rab5-bind: Rabaptin-l 57.1 41 0.00089 29.8 6.8 48 329-376 134-181 (181)
No 1
>KOG1840|consensus
Probab=100.00 E-value=1.6e-47 Score=382.98 Aligned_cols=472 Identities=46% Similarity=0.590 Sum_probs=420.2
Q ss_pred cCChhHHhhhhhHHHHHHHHhHhhhHHHHHhhhhhccC-------CCchHHHHHHHHhhHHHHHcCcCHHHHHHHHHhhh
Q psy597 21 VMNQEEIMTNTKTVQQGLEALKNEHTSILNSLSETQHG-------GPVEEEKRNMVKNSLEIIELGLNEAQVMTALAGHL 93 (546)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (546)
.+++++|.++|++|.+||++|+.||.+++..+..+..+ .+++.++......++..+..|.++++|+.+.+.|+
T Consensus 2 ~~~~~~i~~~~~~v~~~l~~l~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (508)
T KOG1840|consen 2 RLSQDSISSGTESVDLGLEALRSEHQELLVPLESTVKCFARSLLERSLPSEKSQLLRKSLLKLSLGSDEASVSGAAARHL 81 (508)
T ss_pred CCcccccccccHHHHHHHHHHHhhhHhHhhHHHHHHhhhhcccccccccchHhhhhHHHhhhhcCCCchHHHHHHHHHHh
Confidence 47899999999999999999999999999998887554 46767799999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--hhhhcCCCCCcCCCCCCCCCCC
Q psy597 94 QNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSSEQANSQLEEEKKHLEFMS--SIRKYDSDIQGDENSGDQKSDK 171 (546)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~~~~~qlee~~~~l~~~~--~l~~~~~~~~~~~~~~~~~~~~ 171 (546)
+..++..+.+++|+|++++++.|++++|+.+++.+..++.++.+++++..|+.++. .+..|+++....... ..
T Consensus 82 ~s~~~~~~~~~a~~r~~~~e~~~~~~el~~~~r~~k~~e~~~~~~~~~~~hl~~~~~~~~~~l~ea~~~~e~~-----~~ 156 (508)
T KOG1840|consen 82 QSSEAGGQKLLAQVRRLCQEGEWLEDELALTQRALKQSERSVAQLEEEKLHLLAAIQALLLQLDEAEQGQEQA-----AV 156 (508)
T ss_pred cccchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhcccccc-----cc
Confidence 99999999999999999999999999999999999999999999999899999998 677788765554433 12
Q ss_pred CCCCccccccCCCCCCcCCCCCCCCChhhHHHhhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCc
Q psy597 172 HKQDDPVVDLFPDEDNDDRNNLSPTPPSQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGK 251 (546)
Q Consensus 172 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 251 (546)
....|.+.++++...+.+ .................+..+|....+...+|..|..+|+|++|+..|++++++..+..
T Consensus 157 ~~~~d~la~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~-- 233 (508)
T KOG1840|consen 157 TPVKDSLADLGGEKQEED-SSIEGTLKGLDIQAKGLGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTS-- 233 (508)
T ss_pred cchhHHHHhhcccccccc-ccchhhHHHHHHHHHhcccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcc--
Confidence 222566777766554443 22223334445556677889999999999999999999999999999999999988777
Q ss_pred hhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCC
Q psy597 252 YEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENH 331 (546)
Q Consensus 252 ~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~ 331 (546)
+..++.....+..+|.+|..+++|.+|+.+|++|+.+.+..+|+++
T Consensus 234 ----------------------------------G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 234 ----------------------------------GLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred ----------------------------------CccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 6689999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q psy597 332 AAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKL 411 (546)
Q Consensus 332 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~ 411 (546)
|.++.++.+||.+|...|+|++|..+|++|+++.++..+.+++.....+.+++.++..++++++|+.+++++++++...+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCccc----CCChhhHHHHhhchhhHHHHHHHHHHHHH
Q psy597 412 GPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACD----GDNKPIWQDRQKNKAKNREKYYQRALEIY 487 (546)
Q Consensus 412 ~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~A~~~~~~Al~~~ 487 (546)
+++++..+..+.+||.+|..+|+|++|.++|++++.+.++....... +.+.++..+.+.+.+..|...|.++..+.
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998775543333 33444455788889999999999999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhccC
Q psy597 488 ELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFG 535 (546)
Q Consensus 488 ~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 535 (546)
+.+++++|+...++.+||.+|..+|++++|.++.++++.......-.
T Consensus 440 -~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~ 486 (508)
T KOG1840|consen 440 -KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGT 486 (508)
T ss_pred -HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999877554433
No 2
>KOG4626|consensus
Probab=99.96 E-value=4.4e-28 Score=236.51 Aligned_cols=291 Identities=25% Similarity=0.246 Sum_probs=230.7
Q ss_pred hhHHHhhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHH
Q psy597 199 SQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKV 278 (546)
Q Consensus 199 ~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~ 278 (546)
++..-..++....|..+.+|.++|.++..+|+...|+..|++|+++-+... .|...+...+........+...+..
T Consensus 202 ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~----dAYiNLGnV~ke~~~~d~Avs~Y~r 277 (966)
T KOG4626|consen 202 EAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFL----DAYINLGNVYKEARIFDRAVSCYLR 277 (966)
T ss_pred hhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcch----HHHhhHHHHHHHHhcchHHHHHHHH
Confidence 344444445555566666666666666666666666666666665433221 1111111111111111111111111
Q ss_pred HHHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q psy597 279 AQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLC 358 (546)
Q Consensus 279 ~~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 358 (546)
+ ....|..+.++.++|.+|+.+|..+-|+..|++++++ .|....++++||..+...|+..+|+.+|
T Consensus 278 A------l~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--------~P~F~~Ay~NlanALkd~G~V~ea~~cY 343 (966)
T KOG4626|consen 278 A------LNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--------QPNFPDAYNNLANALKDKGSVTEAVDCY 343 (966)
T ss_pred H------HhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhc--------CCCchHHHhHHHHHHHhccchHHHHHHH
Confidence 1 1146888899999999999999999999999999988 6778999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHH
Q psy597 359 KRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEA 438 (546)
Q Consensus 359 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA 438 (546)
.+++.+. |..+.+++|||.+|..+|.+++|..+|.++++. .|..+.+.+|||.+|..+|++++|
T Consensus 344 nkaL~l~--------p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--------~p~~aaa~nNLa~i~kqqgnl~~A 407 (966)
T KOG4626|consen 344 NKALRLC--------PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--------FPEFAAAHNNLASIYKQQGNLDDA 407 (966)
T ss_pred HHHHHhC--------CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--------ChhhhhhhhhHHHHHHhcccHHHH
Confidence 9999996 888999999999999999999999999999999 899999999999999999999999
Q ss_pred HHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHH
Q psy597 439 EILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEA 518 (546)
Q Consensus 439 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A 518 (546)
+.+|++++.+.|.. .....+++..+...|+...|+.+|.+|+.+ .|..++++.+||.+|...|+..+|
T Consensus 408 i~~YkealrI~P~f----Ada~~NmGnt~ke~g~v~~A~q~y~rAI~~--------nPt~AeAhsNLasi~kDsGni~~A 475 (966)
T KOG4626|consen 408 IMCYKEALRIKPTF----ADALSNMGNTYKEMGDVSAAIQCYTRAIQI--------NPTFAEAHSNLASIYKDSGNIPEA 475 (966)
T ss_pred HHHHHHHHhcCchH----HHHHHhcchHHHHhhhHHHHHHHHHHHHhc--------CcHHHHHHhhHHHHhhccCCcHHH
Confidence 99999999986643 255677888899999999999999999988 899999999999999999999999
Q ss_pred HHHHHHHHHHhhhhccC
Q psy597 519 EILYKQVLTRAHEREFG 535 (546)
Q Consensus 519 ~~~~~~al~~~~~~~~~ 535 (546)
+..|+.|+++.|+.+-.
T Consensus 476 I~sY~~aLklkPDfpdA 492 (966)
T KOG4626|consen 476 IQSYRTALKLKPDFPDA 492 (966)
T ss_pred HHHHHHHHccCCCCchh
Confidence 99999999998875543
No 3
>KOG4626|consensus
Probab=99.95 E-value=4.8e-27 Score=229.34 Aligned_cols=342 Identities=21% Similarity=0.214 Sum_probs=268.5
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCcCCCCCCCCCh
Q psy597 119 DELANTQQKLQSSEQANSQLEEEKKHLEFMSSIRKYDSDIQGDENSGDQKSDKHKQDDPVVDLFPDEDNDDRNNLSPTPP 198 (546)
Q Consensus 119 ~~la~~~~~l~~~~~~~~qlee~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 198 (546)
.+.+++..+++.....-+++++++..+..+-.++.-..+.+..... .+... ....
T Consensus 113 ~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~---------------al~~~----------~~~~ 167 (966)
T KOG4626|consen 113 PQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAA---------------ALVTQ----------GDLE 167 (966)
T ss_pred chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHH---------------HHHhc----------CCCc
Confidence 4566778888888888888888887776666655322221111110 01111 1112
Q ss_pred hhHHHhhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHH
Q psy597 199 SQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKV 278 (546)
Q Consensus 199 ~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~ 278 (546)
.++.....+..-+|...-+...+|..+...|+..+|...|.+|++..+.. ..+..-+...+....+.-.+...+
T Consensus 168 ~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~f----AiawsnLg~~f~~~Gei~~aiq~y-- 241 (966)
T KOG4626|consen 168 LAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCF----AIAWSNLGCVFNAQGEIWLAIQHY-- 241 (966)
T ss_pred ccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCce----eeeehhcchHHhhcchHHHHHHHH--
Confidence 23333444555667788888888888888899999988888888864421 111111222222222222222222
Q ss_pred HHHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q psy597 279 AQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLC 358 (546)
Q Consensus 279 ~~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 358 (546)
.+...-+|....+|++||.+|...+.|+.|+..|.+|+.+ .|..+.++.++|.+|+.+|..+-|+..|
T Consensus 242 ----~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--------rpn~A~a~gNla~iYyeqG~ldlAI~~Y 309 (966)
T KOG4626|consen 242 ----EEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--------RPNHAVAHGNLACIYYEQGLLDLAIDTY 309 (966)
T ss_pred ----HHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--------CCcchhhccceEEEEeccccHHHHHHHH
Confidence 2224567999999999999999999999999999999988 5777999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHH
Q psy597 359 KRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEA 438 (546)
Q Consensus 359 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA 438 (546)
+++++. .|....+++|+|..+...|+..+|+.+|.+|+.+ .|..+.+.+|||.+|..+|++++|
T Consensus 310 kral~~--------~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--------~p~hadam~NLgni~~E~~~~e~A 373 (966)
T KOG4626|consen 310 KRALEL--------QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--------CPNHADAMNNLGNIYREQGKIEEA 373 (966)
T ss_pred HHHHhc--------CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhccchHH
Confidence 999999 4999999999999999999999999999999999 889999999999999999999999
Q ss_pred HHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHH
Q psy597 439 EILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEA 518 (546)
Q Consensus 439 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A 518 (546)
..+|.+++...+... .+.++++..+..+|++++|+.+|++|+.+ .|..+.++.++|..|-.+|+...|
T Consensus 374 ~~ly~~al~v~p~~a----aa~nNLa~i~kqqgnl~~Ai~~YkealrI--------~P~fAda~~NmGnt~ke~g~v~~A 441 (966)
T KOG4626|consen 374 TRLYLKALEVFPEFA----AAHNNLASIYKQQGNLDDAIMCYKEALRI--------KPTFADALSNMGNTYKEMGDVSAA 441 (966)
T ss_pred HHHHHHHHhhChhhh----hhhhhHHHHHHhcccHHHHHHHHHHHHhc--------CchHHHHHHhcchHHHHhhhHHHH
Confidence 999999999876532 45678888899999999999999999999 899999999999999999999999
Q ss_pred HHHHHHHHHHhhh
Q psy597 519 EILYKQVLTRAHE 531 (546)
Q Consensus 519 ~~~~~~al~~~~~ 531 (546)
+.+|.+|+.+.|.
T Consensus 442 ~q~y~rAI~~nPt 454 (966)
T KOG4626|consen 442 IQCYTRAIQINPT 454 (966)
T ss_pred HHHHHHHHhcCcH
Confidence 9999999998764
No 4
>KOG1840|consensus
Probab=99.93 E-value=2.1e-22 Score=202.49 Aligned_cols=392 Identities=28% Similarity=0.337 Sum_probs=300.9
Q ss_pred hhHHHHHHHHhHhhhHHHHHhhhhhccC-CCchHHHHHH------HHhhHHHHHcCcCHHHH------HHHHHhhhhhHH
Q psy597 31 TKTVQQGLEALKNEHTSILNSLSETQHG-GPVEEEKRNM------VKNSLEIIELGLNEAQV------MTALAGHLQNVE 97 (546)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~------~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 97 (546)
.+...+-.+.++.|-..-.+.+...-.. ..+.++|..+ +...++....+...+.+ |..++...+...
T Consensus 95 ~r~~~~e~~~~~~el~~~~r~~k~~e~~~~~~~~~~~hl~~~~~~~~~~l~ea~~~~e~~~~~~~~d~la~~~~~~~~~~ 174 (508)
T KOG1840|consen 95 VRRLCQEGEWLEDELALTQRALKQSERSVAQLEEEKLHLLAAIQALLLQLDEAEQGQEQAAVTPVKDSLADLGGEKQEED 174 (508)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhcccccccccchhHHHHhhcccccccc
Confidence 3444444455555555555555444322 2222223333 33335555555544443 555555555544
Q ss_pred HHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCCCCcCCCCCCCCCCCCCCCcc
Q psy597 98 AEKQKLRTQVRRLVQENAWLRDELANTQQKLQSSEQANSQLEEEKKHLEFMSSIRKYDSDIQGDENSGDQKSDKHKQDDP 177 (546)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~~~~~qlee~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (546)
.+............+++.-=-...-.+...|...+...++++++..-.+....+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~-------------------------- 228 (508)
T KOG1840|consen 175 SSIEGTLKGLDIQAKGLGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRI-------------------------- 228 (508)
T ss_pred ccchhhHHHHHHHHHhcccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--------------------------
Confidence 444444444333333333333566666777888888888888886532211111
Q ss_pred ccccCCCCCCcCCCCCCCCChhhHHHhhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHh
Q psy597 178 VVDLFPDEDNDDRNNLSPTPPSQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAET 257 (546)
Q Consensus 178 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~ 257 (546)
+.+ ..+..+|.....+..+|..|...++|.+|+.+|++|+.+.....
T Consensus 229 l~k-------------------------~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~-------- 275 (508)
T KOG1840|consen 229 LEK-------------------------TSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF-------- 275 (508)
T ss_pred HHH-------------------------ccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc--------
Confidence 000 11234566777777899999999999999999999999999888
Q ss_pred hHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q psy597 258 LEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAAT 337 (546)
Q Consensus 258 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~ 337 (546)
|.++|.++.++.+||.+|...|+|++|..++++|+.++.+..+.+++.+...
T Consensus 276 ----------------------------G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~ 327 (508)
T KOG1840|consen 276 ----------------------------GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQ 327 (508)
T ss_pred ----------------------------CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHH
Confidence 8899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChH
Q psy597 338 LNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSN 417 (546)
Q Consensus 338 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~ 417 (546)
+.+++.++..++++++|..++++++++....+|.+++..+..+.+||.+|..+|+|++|.++|++|+.+.+...+..++.
T Consensus 328 l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~ 407 (508)
T KOG1840|consen 328 LSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYG 407 (508)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888899
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhccc---CcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCC
Q psy597 418 VAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREF---GACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPD 494 (546)
Q Consensus 418 ~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~ 494 (546)
....+++||..|...+++.+|...|.++..+.+..+. +....+.+++-.|...|+++.|.++...++...+...+..
T Consensus 408 ~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~ 487 (508)
T KOG1840|consen 408 VGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGTA 487 (508)
T ss_pred hhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999998844322 2233445566669999999999999999999999888887
Q ss_pred CHHHHHHHHHHHHHH
Q psy597 495 DSNVAKTKNNLASCY 509 (546)
Q Consensus 495 ~~~~~~~~~~La~~y 509 (546)
++.....-..++...
T Consensus 488 ~~~~~~~~~~~~~~~ 502 (508)
T KOG1840|consen 488 SPTVEDEKLRLADLS 502 (508)
T ss_pred CcchhHHHHhhhHHH
Confidence 777665555554443
No 5
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.89 E-value=2.4e-21 Score=208.13 Aligned_cols=247 Identities=16% Similarity=0.107 Sum_probs=211.3
Q ss_pred CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCC
Q psy597 209 YEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHD 288 (546)
Q Consensus 209 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 288 (546)
...|....++..+|.++...|++++|+..|+++++ .
T Consensus 325 ~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~--------------------------------------------l 360 (615)
T TIGR00990 325 KLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIE--------------------------------------------L 360 (615)
T ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------------------------------c
Confidence 34688889999999999999999999999999988 3
Q ss_pred ChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy597 289 HPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 368 (546)
Q Consensus 289 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 368 (546)
.|....++..+|.++...|++++|+.+|++++.. .|....+++.+|.++...|++++|+.+|++++.+.
T Consensus 361 ~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~--- 429 (615)
T TIGR00990 361 DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL--------NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD--- 429 (615)
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---
Confidence 5677788999999999999999999999999987 34446789999999999999999999999999984
Q ss_pred cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 369 LGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 369 ~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
|.....+.++|.++...|++++|+..|++++.. .|..+.++..+|.++..+|++++|+..|++++.+
T Consensus 430 -----P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l 496 (615)
T TIGR00990 430 -----PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--------FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL 496 (615)
T ss_pred -----ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 777888999999999999999999999999988 7778889999999999999999999999999998
Q ss_pred hhhcccCcccC--CCh-hhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy597 449 AHEREFGACDG--DNK-PIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQV 525 (546)
Q Consensus 449 ~~~~~~~~~~~--~~~-~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~a 525 (546)
.+......... ... ....+...+++.+|...+++++.+ +|....++..+|.++..+|++++|+.+|+++
T Consensus 497 ~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--------~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A 568 (615)
T TIGR00990 497 EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII--------DPECDIAVATMAQLLLQQGDVDEALKLFERA 568 (615)
T ss_pred CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 76532211111 011 111233468899999999999876 5666778999999999999999999999999
Q ss_pred HHHhhh
Q psy597 526 LTRAHE 531 (546)
Q Consensus 526 l~~~~~ 531 (546)
+++.+.
T Consensus 569 ~~l~~~ 574 (615)
T TIGR00990 569 AELART 574 (615)
T ss_pred HHHhcc
Confidence 998764
No 6
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=99.88 E-value=2.9e-23 Score=183.09 Aligned_cols=172 Identities=62% Similarity=0.871 Sum_probs=66.4
Q ss_pred HcCcCHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCC
Q psy597 77 ELGLNEAQVMTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSSEQANSQLEEEKKHLEFMSSIRKYDS 156 (546)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~~~~~qlee~~~~l~~~~~l~~~~~ 156 (546)
++|++++|||.++..||+.+++++++|+++|+|||+||.||+++++.+++.++.+++.+++++++++||+||..+.+|+.
T Consensus 1 eL~~~~aq~~~~l~~~L~~l~~erqkl~~qv~rL~qEN~~Lr~el~~tq~~lq~se~~~~~Lpee~~~Lqfl~~~~r~d~ 80 (181)
T PF09311_consen 1 ELGLGEAQVMRALQQHLQSLEAERQKLRAQVRRLCQENDWLRGELANTQQKLQESEQEVAQLPEEVKHLQFLVSIKREDL 80 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHHT---------------------------------------------------
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCcchHHHHHHHHHhccccc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred CCCcCCCCCCCCCCCCCCCccccccCCCCCCcCCCCC--CCCChhhHHHhhhcCCCchHHHHHHHHHHHHHHHcCCHHHH
Q psy597 157 DIQGDENSGDQKSDKHKQDDPVVDLFPDEDNDDRNNL--SPTPPSQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVA 234 (546)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A 234 (546)
........ ..........+.+.++||+.+....... .+.+..........+...|...+++.++...|...|+|+.|
T Consensus 81 ~~~~~~~e-~~e~~~~~ei~~L~~l~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~E~~~rl~tL~nlv~q~~~q~r~eva 159 (181)
T PF09311_consen 81 IESRTAAE-HEEEKLRSEIDTLQELFPNLEEELRAEISELPSPKSEMAQLQSQGYEIPARLRTLHNLVIQYESQGRYEVA 159 (181)
T ss_dssp ----------------------------------------------------S-TTS-HHHHHHHHHHHHHHHTT-HHHH
T ss_pred cccchhhh-hhhhcccccchhHHHcCccccccccccccccccccchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 65443211 1122344567888889998877765554 44555667777888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhc
Q psy597 235 VPLCKQALEDLEKTS 249 (546)
Q Consensus 235 ~~~~~~al~~~~~~~ 249 (546)
++.++++++...+..
T Consensus 160 v~~~KqalEdl~~~~ 174 (181)
T PF09311_consen 160 VPLCKQALEDLEKES 174 (181)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHh
Confidence 999999999887776
No 7
>KOG1126|consensus
Probab=99.87 E-value=6.1e-21 Score=189.81 Aligned_cols=287 Identities=13% Similarity=0.047 Sum_probs=235.7
Q ss_pred hHHHhhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHH
Q psy597 200 QFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVA 279 (546)
Q Consensus 200 ~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~ 279 (546)
++..+......+++..-++..+|..|+..++|++|..+|+.+-+.-+-.. ....++...+-...+....-..+..
T Consensus 338 A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv----~~meiyST~LWHLq~~v~Ls~Laq~- 412 (638)
T KOG1126|consen 338 ALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRV----KGMEIYSTTLWHLQDEVALSYLAQD- 412 (638)
T ss_pred HHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc----cchhHHHHHHHHHHhhHHHHHHHHH-
Confidence 34445554455677778899999999999999999999988766533222 1222333333232222222111111
Q ss_pred HHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy597 280 QILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCK 359 (546)
Q Consensus 280 ~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 359 (546)
+ ....|..+..|..+|.+|..+++++.|++.|++|+.+ +|..+.+|..+|.-+.....++.|..+|+
T Consensus 413 --L---i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--------dp~faYayTLlGhE~~~~ee~d~a~~~fr 479 (638)
T KOG1126|consen 413 --L---IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--------DPRFAYAYTLLGHESIATEEFDKAMKSFR 479 (638)
T ss_pred --H---HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--------CCccchhhhhcCChhhhhHHHHhHHHHHH
Confidence 1 3356778889999999999999999999999999988 67779999999999999999999999999
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHH
Q psy597 360 RALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAE 439 (546)
Q Consensus 360 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~ 439 (546)
+|+.. +|....+|+.+|.+|.++++++.|+-+|++|+++ .|........+|.++.+.|+.++|+
T Consensus 480 ~Al~~--------~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I--------NP~nsvi~~~~g~~~~~~k~~d~AL 543 (638)
T KOG1126|consen 480 KALGV--------DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI--------NPSNSVILCHIGRIQHQLKRKDKAL 543 (638)
T ss_pred hhhcC--------CchhhHHHHhhhhheeccchhhHHHHHHHhhhcC--------CccchhHHhhhhHHHHHhhhhhHHH
Confidence 99988 5899999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHH
Q psy597 440 ILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAE 519 (546)
Q Consensus 440 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~ 519 (546)
.+|++|+.+.+.++ ......+..+...+++.+|+..+++..++ .|....++..+|.+|.+.|+.+.|+
T Consensus 544 ~~~~~A~~ld~kn~----l~~~~~~~il~~~~~~~eal~~LEeLk~~--------vP~es~v~~llgki~k~~~~~~~Al 611 (638)
T KOG1126|consen 544 QLYEKAIHLDPKNP----LCKYHRASILFSLGRYVEALQELEELKEL--------VPQESSVFALLGKIYKRLGNTDLAL 611 (638)
T ss_pred HHHHHHHhcCCCCc----hhHHHHHHHHHhhcchHHHHHHHHHHHHh--------CcchHHHHHHHHHHHHHHccchHHH
Confidence 99999999876654 33455667788889999999999888877 7888999999999999999999999
Q ss_pred HHHHHHHHHhhhh
Q psy597 520 ILYKQVLTRAHER 532 (546)
Q Consensus 520 ~~~~~al~~~~~~ 532 (546)
..|--|+++.|..
T Consensus 612 ~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 612 LHFSWALDLDPKG 624 (638)
T ss_pred HhhHHHhcCCCcc
Confidence 9999999987654
No 8
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.87 E-value=4.9e-20 Score=197.94 Aligned_cols=192 Identities=17% Similarity=0.179 Sum_probs=165.2
Q ss_pred hcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q psy597 307 NKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALL 386 (546)
Q Consensus 307 g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 386 (546)
++|++|+..|++++... ...|..+.++..+|.++...|++++|+..|++++++ +|....++..+|.+
T Consensus 308 ~~y~~A~~~~~~al~~~-----~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--------~P~~~~~~~~la~~ 374 (615)
T TIGR00990 308 ESYEEAARAFEKALDLG-----KLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--------DPRVTQSYIKRASM 374 (615)
T ss_pred hhHHHHHHHHHHHHhcC-----CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHH
Confidence 45566666666665542 225677788999999999999999999999999988 37888899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHH
Q psy597 387 CQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQ 466 (546)
Q Consensus 387 ~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~ 466 (546)
+...|++++|+.+|++++++ +|....+++.+|.++...|++++|+.+|++++.+.|... ......+.+
T Consensus 375 ~~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~----~~~~~la~~ 442 (615)
T TIGR00990 375 NLELGDPDKAEEDFDKALKL--------NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFI----FSHIQLGVT 442 (615)
T ss_pred HHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCH----HHHHHHHHH
Confidence 99999999999999999998 777788999999999999999999999999999866543 234456777
Q ss_pred HHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q psy597 467 DRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 531 (546)
Q Consensus 467 ~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~ 531 (546)
+...|++++|+..|.+++.. .|....++..+|.++...|++++|+..|++++.+.|+
T Consensus 443 ~~~~g~~~eA~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~ 499 (615)
T TIGR00990 443 QYKEGSIASSMATFRRCKKN--------FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKE 499 (615)
T ss_pred HHHCCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCc
Confidence 88999999999999999976 5777888999999999999999999999999998765
No 9
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.82 E-value=5.5e-18 Score=181.81 Aligned_cols=203 Identities=17% Similarity=0.155 Sum_probs=165.4
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q psy597 295 MLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHP 374 (546)
Q Consensus 295 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 374 (546)
++..++ .+...|++++|+..+++++.... +........++.++...|++++|+..|++++.. +|
T Consensus 180 a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~-------~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--------~p 243 (656)
T PRK15174 180 MIATCL-SFLNKSRLPEDHDLARALLPFFA-------LERQESAGLAVDTLCAVGKYQEAIQTGESALAR--------GL 243 (656)
T ss_pred HHHHHH-HHHHcCCHHHHHHHHHHHHhcCC-------CcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CC
Confidence 344433 46778888888888888766521 111223456688899999999999999999987 37
Q ss_pred HHHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q psy597 375 DVAKQLNNLALLCQNQSKYEE----VERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAH 450 (546)
Q Consensus 375 ~~~~~~~~la~~~~~~g~~~e----A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~ 450 (546)
....++.++|.++...|++++ |+..|++++.+ .|....++.++|.++..+|++++|+..+++++...|
T Consensus 244 ~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P 315 (656)
T PRK15174 244 DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--------NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP 315 (656)
T ss_pred CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 778899999999999999996 89999999998 788889999999999999999999999999999866
Q ss_pred hcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q psy597 451 EREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAH 530 (546)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~ 530 (546)
... ......+..+...|++++|...|.+++.. +|.....+..+|.++...|++++|+..|+++++..|
T Consensus 316 ~~~----~a~~~La~~l~~~G~~~eA~~~l~~al~~--------~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 316 DLP----YVRAMYARALRQVGQYTAASDEFVQLARE--------KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred CCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 543 23445667788899999999999998876 566666677789999999999999999999999987
Q ss_pred hhc
Q psy597 531 ERE 533 (546)
Q Consensus 531 ~~~ 533 (546)
+..
T Consensus 384 ~~~ 386 (656)
T PRK15174 384 SHL 386 (656)
T ss_pred hhc
Confidence 753
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.81 E-value=9.3e-18 Score=170.92 Aligned_cols=298 Identities=14% Similarity=0.125 Sum_probs=182.1
Q ss_pred hhHHHhhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHH--HhhhhhhHHHHHHH
Q psy597 199 SQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCA--LRSRKESYDIVKQA 276 (546)
Q Consensus 199 ~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~--l~~~~~~~~~~~~~ 276 (546)
.+...+.+....+|.++.++..+|.++...|++++|+..+++++.... .........+...+ +....+...+...+
T Consensus 53 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~--~~~~~~~~~~~~La~~~~~~g~~~~A~~~~ 130 (389)
T PRK11788 53 KAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPD--LTREQRLLALQELGQDYLKAGLLDRAEELF 130 (389)
T ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 355555556666788888999999999999999999999998876210 00000111111111 11111222222222
Q ss_pred HHHHHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Q psy597 277 KVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEP 356 (546)
Q Consensus 277 ~~~~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~ 356 (546)
... ....|....++..++.++...|++++|+..+.+++...+. +........+..+|.++...|++++|+.
T Consensus 131 ~~~------l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 131 LQL------VDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGD---SLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHH------HcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC---cchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 111 1124555667777778888888888888877777654211 1112234456677777778888888888
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHHHHcCCH
Q psy597 357 LCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSN-VAKTKNNLASCYLKQGKY 435 (546)
Q Consensus 357 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~-~~~~~~~La~~y~~~g~~ 435 (546)
+|+++++.. |....++..+|.++...|++++|+.+|++++.. +|. ...++..++.+|...|++
T Consensus 202 ~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~~~l~~~~~~~g~~ 265 (389)
T PRK11788 202 LLKKALAAD--------PQCVRASILLGDLALAQGDYAAAIEALERVEEQ--------DPEYLSEVLPKLMECYQALGDE 265 (389)
T ss_pred HHHHHHhHC--------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------ChhhHHHHHHHHHHHHHHcCCH
Confidence 888877762 555667777788888888888888888877765 333 345567777788888888
Q ss_pred HHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH--cC
Q psy597 436 KEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK--QG 513 (546)
Q Consensus 436 ~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~--~g 513 (546)
++|...+++++...|+. ......+..+...|++++|...+.+++.. .|........++..+.. .|
T Consensus 266 ~~A~~~l~~~~~~~p~~-----~~~~~la~~~~~~g~~~~A~~~l~~~l~~--------~P~~~~~~~l~~~~~~~~~~g 332 (389)
T PRK11788 266 AEGLEFLRRALEEYPGA-----DLLLALAQLLEEQEGPEAAQALLREQLRR--------HPSLRGFHRLLDYHLAEAEEG 332 (389)
T ss_pred HHHHHHHHHHHHhCCCc-----hHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CcCHHHHHHHHHHhhhccCCc
Confidence 88888887777764322 11234455566777777777777777765 45444333233322211 45
Q ss_pred CHHHHHHHHHHHHH--HhhhhccCC
Q psy597 514 KYKEAEILYKQVLT--RAHEREFGA 536 (546)
Q Consensus 514 ~~~~A~~~~~~al~--~~~~~~~~~ 536 (546)
+..+|+..+++.++ +.+++.+..
T Consensus 333 ~~~~a~~~~~~~~~~~~~~~p~~~c 357 (389)
T PRK11788 333 RAKESLLLLRDLVGEQLKRKPRYRC 357 (389)
T ss_pred cchhHHHHHHHHHHHHHhCCCCEEC
Confidence 77777777777775 334444443
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.81 E-value=3.1e-17 Score=187.70 Aligned_cols=413 Identities=16% Similarity=0.153 Sum_probs=261.5
Q ss_pred HHHHHHHHhhHHHHHcC-cCHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHhhhhcHHHHHHH-------HHHHH--
Q psy597 63 EEKRNMVKNSLEIIELG-LNEAQVMTALAGHL---QNVEAEKQKLRTQVRRLVQENAWLRDELANT-------QQKLQ-- 129 (546)
Q Consensus 63 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~-------~~~l~-- 129 (546)
+.+-.++.++|+++..- -++..++..++... ...+ +-++.-..+.++..++.+++...... .+.++
T Consensus 41 ~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~-~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A 119 (1157)
T PRK11447 41 THREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSD-GAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQA 119 (1157)
T ss_pred hCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHH-HHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHH
Confidence 34566777788777543 22344444443322 2222 33344445555556665554322221 11233
Q ss_pred HHHHHhhhHHHHHHHHHHHHhhhhcCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCcCCCCCCCCChhhHHHhhhcCC
Q psy597 130 SSEQANSQLEEEKKHLEFMSSIRKYDSDIQGDENSGDQKSDKHKQDDPVVDLFPDEDNDDRNNLSPTPPSQFAQQVNAGY 209 (546)
Q Consensus 130 ~~~~~~~qlee~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (546)
......++++++++.++-+.... +.. . +-....+.. ........+.+...+.....
T Consensus 120 ~ll~~~g~~~eA~~~~~~~l~~~---p~~---~-------------~la~~y~~~-----~~~~~g~~~~A~~~L~~ll~ 175 (1157)
T PRK11447 120 RLLATTGRTEEALASYDKLFNGA---PPE---L-------------DLAVEYWRL-----VAKLPAQRPEAINQLQRLNA 175 (1157)
T ss_pred HHHHhCCCHHHHHHHHHHHccCC---CCC---h-------------HHHHHHHHH-----HhhCCccHHHHHHHHHHHHH
Confidence 34455578888877664443211 100 0 000000000 00011234567777777777
Q ss_pred CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-------------CchhHHHhhHHHHHhhhhhhHHHHHHH
Q psy597 210 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTS-------------GKYEAAETLEDCALRSRKESYDIVKQA 276 (546)
Q Consensus 210 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-------------~~~~~a~~~~~~~l~~~~~~~~~~~~~ 276 (546)
.+|.++.++..+|.+++..|++++|+..+++++...+... +....+...+...+...+.........
T Consensus 176 ~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~ 255 (1157)
T PRK11447 176 DYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAAR 255 (1157)
T ss_pred hCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHH
Confidence 8899999999999999999999999999999865321000 001111111222222222211111100
Q ss_pred HHHHHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Q psy597 277 KVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEP 356 (546)
Q Consensus 277 ~~~~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~ 356 (546)
........ ...+|.. ....+|.++...|++++|+..|++++... |....++..+|.+|...|++++|+.
T Consensus 256 ~~L~~~~~-~~~dp~~--~~~~~G~~~~~~g~~~~A~~~l~~aL~~~--------P~~~~a~~~Lg~~~~~~g~~~eA~~ 324 (1157)
T PRK11447 256 SQLAEQQK-QLADPAF--RARAQGLAAVDSGQGGKAIPELQQAVRAN--------PKDSEALGALGQAYSQQGDRARAVA 324 (1157)
T ss_pred HHHHHHHH-hccCcch--HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 00000000 1112221 22456899999999999999999999873 4447889999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCChH-----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q psy597 357 LCKRALEIREKVLGKEHPD-----------VAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNL 425 (546)
Q Consensus 357 ~~~~al~~~~~~~~~~~~~-----------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~L 425 (546)
+|+++++.. ++++. .......+|.++...|++++|+.+|++++.+ +|....++..+
T Consensus 325 ~l~~Al~~~-----p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~--------~P~~~~a~~~L 391 (1157)
T PRK11447 325 QFEKALALD-----PHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV--------DNTDSYAVLGL 391 (1157)
T ss_pred HHHHHHHhC-----CCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHH
Confidence 999999874 22221 1223456688999999999999999999998 77778899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhhhcccCcc--------------------------------------cCCChhhHHH
Q psy597 426 ASCYLKQGKYKEAEILYKQVLTRAHEREFGAC--------------------------------------DGDNKPIWQD 467 (546)
Q Consensus 426 a~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~--------------------------------------~~~~~~~~~~ 467 (546)
|.+|..+|++++|+.+|++++...+.+..... ......+..+
T Consensus 392 g~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~ 471 (1157)
T PRK11447 392 GDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEAL 471 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 99999999999999999999988665321100 0000112234
Q ss_pred HhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Q psy597 468 RQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 532 (546)
Q Consensus 468 ~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~~ 532 (546)
...|++.+|+..|++++.. .|....+++.+|.+|...|++++|+..++++++..|..
T Consensus 472 ~~~g~~~eA~~~~~~Al~~--------~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~ 528 (1157)
T PRK11447 472 ENQGKWAQAAELQRQRLAL--------DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPND 528 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence 5668888888888888877 67778889999999999999999999999999877654
No 12
>KOG1130|consensus
Probab=99.80 E-value=2.3e-18 Score=161.64 Aligned_cols=286 Identities=19% Similarity=0.156 Sum_probs=233.4
Q ss_pred HHHhhhcCCCchH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHH
Q psy597 201 FAQQVNAGYEIPA-RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVA 279 (546)
Q Consensus 201 ~~~~~~~~~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~ 279 (546)
+....+.+.++-. ....|..+|..|+..++|++|+.+-..-+.+.+..+
T Consensus 40 f~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lg------------------------------ 89 (639)
T KOG1130|consen 40 FKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLG------------------------------ 89 (639)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhc------------------------------
Confidence 3344445555443 445678899999999999999999887777666555
Q ss_pred HHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC---------
Q psy597 280 QILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGK--------- 350 (546)
Q Consensus 280 ~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~--------- 350 (546)
+....+.+.-+||..+...|.|++|+.+..+-+.+.+.. ++......+++++|.+|...|+
T Consensus 90 --------dklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areL--gDrv~e~RAlYNlgnvYhakGk~~g~~~pee 159 (639)
T KOG1130|consen 90 --------DKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFAREL--GDRVLESRALYNLGNVYHAKGKCTGLEAPEE 159 (639)
T ss_pred --------chhccccccccccchhhhhcccchHHHHHHHHhHHHHHH--hHHHhhhHHHhhhhhhhhhcccccCCCChhh
Confidence 344455667789999999999999999999999999988 7777788999999999998876
Q ss_pred -----------HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHH
Q psy597 351 -----------YKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVA 419 (546)
Q Consensus 351 -----------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~ 419 (546)
++.|.++|..-+++.++. ++......++.+||..|+-+|+|+.|+.+.+.-+.+.+.. +|....-
T Consensus 160 ~g~f~~ev~~al~~Av~fy~eNL~l~~~l--gDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~ef--GDrAaeR 235 (639)
T KOG1130|consen 160 KGAFNAEVTSALENAVKFYMENLELSEKL--GDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEF--GDRAAER 235 (639)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHh--hhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHh--hhHHHHH
Confidence 566777888888877776 4455677899999999999999999999999999998877 5566778
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCc--ccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHH
Q psy597 420 KTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGA--CDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSN 497 (546)
Q Consensus 420 ~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~ 497 (546)
.++.|||.++...|+++.|+++|+..+.++.+-.... ...-+.++..|....++..|+.++.+-+.+.+... +...
T Consensus 236 RA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~--DriG 313 (639)
T KOG1130|consen 236 RAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELE--DRIG 313 (639)
T ss_pred HhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--Hhhh
Confidence 8999999999999999999999999998876643322 22334455567788889999999999999888773 3566
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Q psy597 498 VAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 532 (546)
Q Consensus 498 ~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~~ 532 (546)
...+++.||..|...|..++|+.+.+..+++..+-
T Consensus 314 e~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev 348 (639)
T KOG1130|consen 314 ELRACWSLGNAFNALGEHRKALYFAELHLRSSLEV 348 (639)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Confidence 78899999999999999999999999999887653
No 13
>KOG1155|consensus
Probab=99.79 E-value=5.2e-17 Score=154.96 Aligned_cols=279 Identities=16% Similarity=0.168 Sum_probs=217.7
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCCh
Q psy597 211 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHP 290 (546)
Q Consensus 211 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 290 (546)
.|...-.-...|.+.+.+.++++|+..|+...+.-|-..++.+ ++...+-...+.....-.+... ..-+.
T Consensus 258 f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmd----lySN~LYv~~~~skLs~LA~~v------~~idK 327 (559)
T KOG1155|consen 258 FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMD----LYSNVLYVKNDKSKLSYLAQNV------SNIDK 327 (559)
T ss_pred CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHH----HHhHHHHHHhhhHHHHHHHHHH------HHhcc
Confidence 5666666777888999999999999999988774222222211 1111111111101000000000 11234
Q ss_pred hHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q psy597 291 DVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 370 (546)
Q Consensus 291 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 370 (546)
..+.....+|+.|...++.++|+.+|++|+.+ +|....+|..+|.-|..+.+...|+..|++|+++.
T Consensus 328 yR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--------Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~----- 394 (559)
T KOG1155|consen 328 YRPETCCIIANYYSLRSEHEKAVMYFKRALKL--------NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN----- 394 (559)
T ss_pred CCccceeeehhHHHHHHhHHHHHHHHHHHHhc--------CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-----
Confidence 45667888999999999999999999999998 56778999999999999999999999999999995
Q ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q psy597 371 KEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAH 450 (546)
Q Consensus 371 ~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~ 450 (546)
|....+|+.||..|.-++-+.=|+-+|++|+.. .|+....|..||.||.+.++.++|+.+|+.++....
T Consensus 395 ---p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~--------kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d 463 (559)
T KOG1155|consen 395 ---PRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL--------KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD 463 (559)
T ss_pred ---chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc--------CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999998 888999999999999999999999999999998632
Q ss_pred hcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 451 EREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 528 (546)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~ 528 (546)
.. ......++..+...++..+|..+|.+.++.. ...+.-.+....+...|+..+.+.+++++|..+...++.-
T Consensus 464 te----~~~l~~LakLye~l~d~~eAa~~yek~v~~~-~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 464 TE----GSALVRLAKLYEELKDLNEAAQYYEKYVEVS-ELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred cc----hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 21 1344556667888899999999999999876 3344446777888888999999999999999988777653
No 14
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.78 E-value=2.6e-17 Score=185.66 Aligned_cols=284 Identities=21% Similarity=0.177 Sum_probs=149.0
Q ss_pred hhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-------------CchhHHHhhHHHHHhhhhhhHH
Q psy597 205 VNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTS-------------GKYEAAETLEDCALRSRKESYD 271 (546)
Q Consensus 205 ~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-------------~~~~~a~~~~~~~l~~~~~~~~ 271 (546)
.......|..+..+..+|.++...|++++|+..|+++++..+... ++++.|...+..++...+....
T Consensus 591 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 670 (899)
T TIGR02917 591 NEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTE 670 (899)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Confidence 333344566667778888888888888888888887776533221 3333344443333322222111
Q ss_pred HHHHH-----------HHHHHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy597 272 IVKQA-----------KVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNN 340 (546)
Q Consensus 272 ~~~~~-----------~~~~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~ 340 (546)
..... .....+.......|.....+..+|.++...|++++|+..|.+++... ++. ..+..
T Consensus 671 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-----~~~----~~~~~ 741 (899)
T TIGR02917 671 AQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA-----PSS----QNAIK 741 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----CCc----hHHHH
Confidence 10000 00000011111223334445555555555666666666665555542 111 34445
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Q psy597 341 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAK 420 (546)
Q Consensus 341 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~ 420 (546)
++.++...|++++|...+++++.. .|....+++.+|.+|...|++++|+.+|+++++. .|....
T Consensus 742 l~~~~~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~ 805 (899)
T TIGR02917 742 LHRALLASGNTAEAVKTLEAWLKT--------HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK--------APDNAV 805 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--------CCCCHH
Confidence 555666666666666666555554 2444555566666666666666666666666655 444555
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHH
Q psy597 421 TKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAK 500 (546)
Q Consensus 421 ~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~ 500 (546)
++.++|.++...|+ .+|+.++++++...+.+. ......+..+...|++++|...|+++++. .|....
T Consensus 806 ~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--------~~~~~~ 872 (899)
T TIGR02917 806 VLNNLAWLYLELKD-PRALEYAEKALKLAPNIP----AILDTLGWLLVEKGEADRALPLLRKAVNI--------APEAAA 872 (899)
T ss_pred HHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCc----HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCChH
Confidence 55666666666666 556666666665543321 11223444455566666666666666654 344455
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy597 501 TKNNLASCYLKQGKYKEAEILYKQVL 526 (546)
Q Consensus 501 ~~~~La~~y~~~g~~~~A~~~~~~al 526 (546)
++..++.++...|++++|+.++++++
T Consensus 873 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 873 IRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 56666666666666666666666554
No 15
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.78 E-value=3e-17 Score=187.87 Aligned_cols=296 Identities=17% Similarity=0.166 Sum_probs=191.5
Q ss_pred CChhhHHHhhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCc--hhHHHh------hHHHH--Hhh
Q psy597 196 TPPSQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGK--YEAAET------LEDCA--LRS 265 (546)
Q Consensus 196 ~~~~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~a~~------~~~~~--l~~ 265 (546)
....+...+.+.....|.++.++..+|.+|...|++++|+.+|+++++..+..... +..... ....+ ...
T Consensus 284 ~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~ 363 (1157)
T PRK11447 284 QGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALK 363 (1157)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34455666666667778889999999999999999999999999999876544321 100000 00000 111
Q ss_pred hhhhHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHH-----------
Q psy597 266 RKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAV----------- 334 (546)
Q Consensus 266 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~----------- 334 (546)
..+...+...+..+. ...|....++..+|.++...|++++|+.+|++++.+.+. .+..
T Consensus 364 ~g~~~eA~~~~~~Al------~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-----~~~a~~~L~~l~~~~ 432 (1157)
T PRK11447 364 ANNLAQAERLYQQAR------QVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-----NTNAVRGLANLYRQQ 432 (1157)
T ss_pred CCCHHHHHHHHHHHH------HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHhc
Confidence 112222222222222 134556678999999999999999999999999987422 1110
Q ss_pred ----------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q psy597 335 ----------------------------AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALL 386 (546)
Q Consensus 335 ----------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 386 (546)
...+..+|.++...|++++|+.+|+++++.. |....+++.+|.+
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~--------P~~~~~~~~LA~~ 504 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD--------PGSVWLTYRLAQD 504 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHH
Confidence 1233456778888999999999999999884 7778899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH----------------------------------------------
Q psy597 387 CQNQSKYEEVERYYQRALEIYELKLGPDDSNVAK---------------------------------------------- 420 (546)
Q Consensus 387 ~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~---------------------------------------------- 420 (546)
|...|++++|+..|+++++. .|..+.
T Consensus 505 ~~~~G~~~~A~~~l~~al~~--------~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~ 576 (1157)
T PRK11447 505 LRQAGQRSQADALMRRLAQQ--------KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQV 576 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHH
Confidence 99999999999999999875 222222
Q ss_pred ----------------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhch
Q psy597 421 ----------------------------TKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNK 472 (546)
Q Consensus 421 ----------------------------~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (546)
.+..+|.+|...|++++|+..|++++...|.+. ......+.++...|+
T Consensus 577 l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~----~a~~~la~~~~~~g~ 652 (1157)
T PRK11447 577 LETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNA----DARLGLIEVDIAQGD 652 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCCC
Confidence 344455555556666666666666655543321 223334444555566
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q psy597 473 AKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAH 530 (546)
Q Consensus 473 ~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~ 530 (546)
+++|+..+.+++.. .|....++..+|.++...|++++|..+|++++...+
T Consensus 653 ~~eA~~~l~~ll~~--------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~ 702 (1157)
T PRK11447 653 LAAARAQLAKLPAT--------ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAK 702 (1157)
T ss_pred HHHHHHHHHHHhcc--------CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCc
Confidence 66665555555433 334445555666666666666666666666666543
No 16
>KOG0547|consensus
Probab=99.77 E-value=2.5e-17 Score=158.04 Aligned_cols=242 Identities=17% Similarity=0.145 Sum_probs=211.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHH
Q psy597 214 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVA 293 (546)
Q Consensus 214 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 293 (546)
-+.++...|..++..|++-.|...|+.++.+ +|...
T Consensus 325 ~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l--------------------------------------------~~~~~ 360 (606)
T KOG0547|consen 325 MAEALLLRGTFHFLKGDSLGAQEDFDAAIKL--------------------------------------------DPAFN 360 (606)
T ss_pred HHHHHHHhhhhhhhcCCchhhhhhHHHHHhc--------------------------------------------Ccccc
Confidence 4788999999999999999999999999984 34444
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q psy597 294 TMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEH 373 (546)
Q Consensus 294 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 373 (546)
..|..+|.+|....+..+....|++|.++ +|..+.+|+..|.+++-+++|++|+.-|++++++ .
T Consensus 361 ~lyI~~a~~y~d~~~~~~~~~~F~~A~~l--------dp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--------~ 424 (606)
T KOG0547|consen 361 SLYIKRAAAYADENQSEKMWKDFNKAEDL--------DPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--------D 424 (606)
T ss_pred hHHHHHHHHHhhhhccHHHHHHHHHHHhc--------CCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--------C
Confidence 45899999999999999999999999988 5666889999999999999999999999999999 4
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcc
Q psy597 374 PDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHERE 453 (546)
Q Consensus 374 ~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~ 453 (546)
|..+..+..++.+.++++++++++..|+.+... -|..+.+++..|.++..+++|++|++.|+.++.+.+...
T Consensus 425 pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--------FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~ 496 (606)
T KOG0547|consen 425 PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--------FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREH 496 (606)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccc
Confidence 999999999999999999999999999999988 788889999999999999999999999999999877633
Q ss_pred cCcccCC--ChhhH-HHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q psy597 454 FGACDGD--NKPIW-QDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAH 530 (546)
Q Consensus 454 ~~~~~~~--~~~~~-~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~ 530 (546)
...+.+. ..-+. ...-.+++..|...+.+|+++ +|..-.++..||.+..++|+.++|+++|+++..+.+
T Consensus 497 ~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~--------Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 497 LIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIEL--------DPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred cccccchhhhhhhHhhhchhhhHHHHHHHHHHHHcc--------CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 2222221 11122 233448899999999999988 899999999999999999999999999999998875
Q ss_pred h
Q psy597 531 E 531 (546)
Q Consensus 531 ~ 531 (546)
.
T Consensus 569 t 569 (606)
T KOG0547|consen 569 T 569 (606)
T ss_pred h
Confidence 4
No 17
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.77 E-value=4.5e-17 Score=178.87 Aligned_cols=281 Identities=11% Similarity=0.002 Sum_probs=201.1
Q ss_pred HhhhcCCCchH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHH
Q psy597 203 QQVNAGYEIPA--RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQ 280 (546)
Q Consensus 203 ~~~~~~~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~ 280 (546)
......+..|. .+.+++.+|.++.. |++.+|+..|.+++...+... ........+....+...+...+..+
T Consensus 463 ~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-----~~L~lA~al~~~Gr~eeAi~~~rka- 535 (987)
T PRK09782 463 AIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-----QHRAVAYQAYQVEDYATALAAWQKI- 535 (987)
T ss_pred HHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-----HHHHHHHHHHHCCCHHHHHHHHHHH-
Confidence 33445556677 89999999999987 899999999999988654321 1101111111222222222222221
Q ss_pred HhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy597 281 ILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKR 360 (546)
Q Consensus 281 ~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 360 (546)
....+. ...+..+|.++...|++++|+.+|++++... |.....+..++......|++++|+..|++
T Consensus 536 -----~~~~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--------P~~~~l~~~La~~l~~~Gr~~eAl~~~~~ 601 (987)
T PRK09782 536 -----SLHDMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRG--------LGDNALYWWLHAQRYIPGQPELALNDLTR 601 (987)
T ss_pred -----hccCCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------CccHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 111122 2335677888888888888888888888652 33344455566666667888888888888
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHH
Q psy597 361 ALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEI 440 (546)
Q Consensus 361 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~ 440 (546)
++++. |. ..++.++|.++...|++++|+.+|++++.+ +|..+.++.++|.++...|++++|+.
T Consensus 602 AL~l~--------P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--------~Pd~~~a~~nLG~aL~~~G~~eeAi~ 664 (987)
T PRK09782 602 SLNIA--------PS-ANAYVARATIYRQRHNVPAAVSDLRAALEL--------EPNNSNYQAALGYALWDSGDIAQSRE 664 (987)
T ss_pred HHHhC--------CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 88773 54 677888888888888888888888888888 77777888888888888888888888
Q ss_pred HHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Q psy597 441 LYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEI 520 (546)
Q Consensus 441 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~ 520 (546)
.|++++...|.+. ......++++...|++++|+..|++++++ .|..+.+....|.+.....+++.|.+
T Consensus 665 ~l~~AL~l~P~~~----~a~~nLA~al~~lGd~~eA~~~l~~Al~l--------~P~~a~i~~~~g~~~~~~~~~~~a~~ 732 (987)
T PRK09782 665 MLERAHKGLPDDP----ALIRQLAYVNQRLDDMAATQHYARLVIDD--------IDNQALITPLTPEQNQQRFNFRRLHE 732 (987)
T ss_pred HHHHHHHhCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCchhhhhhhHHHHHHHHHHHHHH
Confidence 8888888765443 44567777788888888888888888877 67777888888888888888888888
Q ss_pred HHHHHHHHhhhhc
Q psy597 521 LYKQVLTRAHERE 533 (546)
Q Consensus 521 ~~~~al~~~~~~~ 533 (546)
.+.++....+...
T Consensus 733 ~~~r~~~~~~~~~ 745 (987)
T PRK09782 733 EVGRRWTFSFDSS 745 (987)
T ss_pred HHHHHhhcCccch
Confidence 8888888777665
No 18
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.77 E-value=8.4e-17 Score=181.55 Aligned_cols=289 Identities=19% Similarity=0.134 Sum_probs=206.9
Q ss_pred ChhhHHHhhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHH
Q psy597 197 PPSQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQA 276 (546)
Q Consensus 197 ~~~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~ 276 (546)
...++..+.......|..+.+++.+|.+|...|+|++|+..++++++..+... .........+........+..
T Consensus 38 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~a~~~~~~g~~~~a~~-- 111 (899)
T TIGR02917 38 YKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKN----QVLPLLARAYLLQGKFQQVLD-- 111 (899)
T ss_pred hHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChh----hhHHHHHHHHHHCCCHHHHHH--
Confidence 44566666666677788889999999999999999999999999987533211 111111112211112111111
Q ss_pred HHHHHhccC-CCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHH
Q psy597 277 KVAQILGSG-GHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAE 355 (546)
Q Consensus 277 ~~~~~l~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~ 355 (546)
.+... ....+....++..+|.++...|++++|...|++++... |....++..+|.++...|++++|+
T Consensus 112 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~la~~~~~~~~~~~A~ 179 (899)
T TIGR02917 112 ----ELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAID--------PRSLYAKLGLAQLALAENRFDEAR 179 (899)
T ss_pred ----hhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCChhhHHHHHHHHHHCCCHHHHH
Confidence 11111 23556777888899999999999999999999988763 334567888899999999999999
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCH
Q psy597 356 PLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKY 435 (546)
Q Consensus 356 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~ 435 (546)
..+++++... |....++..+|.++...|++++|+..|++++.. .|....++..++.++...|++
T Consensus 180 ~~~~~~~~~~--------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--------~p~~~~~~~~~~~~~~~~g~~ 243 (899)
T TIGR02917 180 ALIDEVLTAD--------PGNVDALLLKGDLLLSLGNIELALAAYRKAIAL--------RPNNPAVLLALATILIEAGEF 243 (899)
T ss_pred HHHHHHHHhC--------CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCH
Confidence 9999988763 666778888899999999999999999998887 666677888888888889999
Q ss_pred HHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCH
Q psy597 436 KEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKY 515 (546)
Q Consensus 436 ~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~ 515 (546)
++|...++.++...+... ......+..+...|+++.|...|.+++.. .|.....+..+|.++...|++
T Consensus 244 ~~A~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--------~~~~~~~~~~~~~~~~~~g~~ 311 (899)
T TIGR02917 244 EEAEKHADALLKKAPNSP----LAHYLKALVDFQKKNYEDARETLQDALKS--------APEYLPALLLAGASEYQLGNL 311 (899)
T ss_pred HHHHHHHHHHHHhCCCCc----hHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCchhHHHHHHHHHHHcCCH
Confidence 999988888887654422 12223344566677788888877777765 444455666777777777777
Q ss_pred HHHHHHHHHHHHHhhh
Q psy597 516 KEAEILYKQVLTRAHE 531 (546)
Q Consensus 516 ~~A~~~~~~al~~~~~ 531 (546)
++|..++++++...|.
T Consensus 312 ~~A~~~~~~~~~~~p~ 327 (899)
T TIGR02917 312 EQAYQYLNQILKYAPN 327 (899)
T ss_pred HHHHHHHHHHHHhCCC
Confidence 7777777777776554
No 19
>KOG1126|consensus
Probab=99.77 E-value=5.2e-18 Score=169.08 Aligned_cols=249 Identities=18% Similarity=0.208 Sum_probs=211.4
Q ss_pred HHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCCh
Q psy597 213 ARLRTLHNLVIQYASQG--RYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHP 290 (546)
Q Consensus 213 ~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 290 (546)
.....+..+|..|.... +..+|+..|.+ +- ..++
T Consensus 315 ~l~~llr~~~~~~~~~s~y~~~~A~~~~~k-lp-------------------------------------------~h~~ 350 (638)
T KOG1126|consen 315 ELMELLRGLGEGYRSLSQYNCREALNLFEK-LP-------------------------------------------SHHY 350 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hH-------------------------------------------HhcC
Confidence 55667777777776544 44567777766 22 2456
Q ss_pred hHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh--------------------------cCCCCHHHHHHHHHHHHH
Q psy597 291 DVATMLNILALVYRDQNKYKEAANLLNDALTIREKT--------------------------LGENHAAVAATLNNLAVL 344 (546)
Q Consensus 291 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--------------------------~g~~~~~~~~~~~~la~~ 344 (546)
...+++..+|..|+.+++|++|..+|+.+-.+.+-. +-..+|..+.+|..+|.+
T Consensus 351 nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNc 430 (638)
T KOG1126|consen 351 NTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNC 430 (638)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcch
Confidence 667999999999999999999999999876653211 112345567889999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Q psy597 345 YGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNN 424 (546)
Q Consensus 345 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~ 424 (546)
|..+++++.|+++|++|+.+ +|..+.+|..+|.=+.....+|.|..+|++|+.+ +|....+|+.
T Consensus 431 fSLQkdh~~Aik~f~RAiQl--------dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--------~~rhYnAwYG 494 (638)
T KOG1126|consen 431 FSLQKDHDTAIKCFKRAIQL--------DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--------DPRHYNAWYG 494 (638)
T ss_pred hhhhhHHHHHHHHHHHhhcc--------CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--------CchhhHHHHh
Confidence 99999999999999999999 5889999999999999999999999999999998 8999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q psy597 425 LASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNN 504 (546)
Q Consensus 425 La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~ 504 (546)
+|.+|.++++++.|.-+|++|+.+.|.+. ......+..+...|+.++|+..|++|+.+ +|..+...+.
T Consensus 495 lG~vy~Kqek~e~Ae~~fqkA~~INP~ns----vi~~~~g~~~~~~k~~d~AL~~~~~A~~l--------d~kn~l~~~~ 562 (638)
T KOG1126|consen 495 LGTVYLKQEKLEFAEFHFQKAVEINPSNS----VILCHIGRIQHQLKRKDKALQLYEKAIHL--------DPKNPLCKYH 562 (638)
T ss_pred hhhheeccchhhHHHHHHHhhhcCCccch----hHHhhhhHHHHHhhhhhHHHHHHHHHHhc--------CCCCchhHHH
Confidence 99999999999999999999999876543 44566677788999999999999999977 7888889999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhhhhc
Q psy597 505 LASCYLKQGKYKEAEILYKQVLTRAHERE 533 (546)
Q Consensus 505 La~~y~~~g~~~~A~~~~~~al~~~~~~~ 533 (546)
.|.++...+++++|+..+++.-++.|+.-
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~vP~es 591 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELVPQES 591 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhCcchH
Confidence 99999999999999999999999888753
No 20
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.77 E-value=1.4e-16 Score=149.44 Aligned_cols=206 Identities=25% Similarity=0.312 Sum_probs=173.7
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChh
Q psy597 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPD 291 (546)
Q Consensus 212 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (546)
+..+..+..+|.++...|++++|+..++++++. .|.
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------------------------------------------~p~ 63 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEH--------------------------------------------DPD 63 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------------------------------------------Ccc
Confidence 456788999999999999999999999999873 355
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 371 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 371 (546)
...++..+|.++...|++++|+.++++++... |....++.++|.++...|++++|+.+|.+++.. .
T Consensus 64 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~------~ 129 (234)
T TIGR02521 64 DYLAYLALALYYQQLGELEKAEDSFRRALTLN--------PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIED------P 129 (234)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhc------c
Confidence 56788999999999999999999999999873 333568899999999999999999999999875 2
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 372 EHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 372 ~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
..+.....+.++|.++...|++++|..++.+++.. .|....++..+|.++...|++++|..++++++...
T Consensus 130 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-- 199 (234)
T TIGR02521 130 LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI--------DPQRPESLLELAELYYLRGQYKDARAYLERYQQTY-- 199 (234)
T ss_pred ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence 23455677889999999999999999999999987 56667788999999999999999999999888741
Q ss_pred cccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q psy597 452 REFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRA 529 (546)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~ 529 (546)
|.....+..++.++...|+.++|..+.+.+....
T Consensus 200 --------------------------------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 200 --------------------------------------------NQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred --------------------------------------------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 2223445577888899999999999888776643
No 21
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.76 E-value=1.7e-16 Score=161.65 Aligned_cols=283 Identities=16% Similarity=0.111 Sum_probs=209.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHH
Q psy597 214 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVA 293 (546)
Q Consensus 214 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 293 (546)
.....+..|..+...|++++|+..|.++++..+... .+............+...+........ ...........
T Consensus 34 ~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l--~~~~~~~~~~~ 107 (389)
T PRK11788 34 RLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETV----ELHLALGNLFRRRGEVDRAIRIHQNLL--SRPDLTREQRL 107 (389)
T ss_pred hccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccH----HHHHHHHHHHHHcCcHHHHHHHHHHHh--cCCCCCHHHHH
Confidence 345567778999999999999999999998644321 111111112222222222222222221 11111223345
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q psy597 294 TMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEH 373 (546)
Q Consensus 294 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 373 (546)
.++..+|.+|...|++++|+.+|.+++.. .|....++..++.++...|++++|+..+.+++..... +..
T Consensus 108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---~~~ 176 (389)
T PRK11788 108 LALQELGQDYLKAGLLDRAEELFLQLVDE--------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGD---SLR 176 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcC--------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC---cch
Confidence 78899999999999999999999999865 3445678999999999999999999999998876310 111
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcc
Q psy597 374 PDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHERE 453 (546)
Q Consensus 374 ~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~ 453 (546)
......+..+|.++...|++++|+.+|+++++. .|....++..+|.+|...|++++|+.+|++++...+...
T Consensus 177 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 248 (389)
T PRK11788 177 VEIAHFYCELAQQALARGDLDAARALLKKALAA--------DPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYL 248 (389)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH--------CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhH
Confidence 234556788999999999999999999999997 677788999999999999999999999999998644321
Q ss_pred cCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhc
Q psy597 454 FGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHERE 533 (546)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~~~ 533 (546)
.......+..+...|++++|...+.+++.. .|... .+..++.++...|++++|...++++++..|+..
T Consensus 249 ---~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--------~p~~~-~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~ 316 (389)
T PRK11788 249 ---SEVLPKLMECYQALGDEAEGLEFLRRALEE--------YPGAD-LLLALAQLLEEQEGPEAAQALLREQLRRHPSLR 316 (389)
T ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCch-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH
Confidence 112234556688899999999999998876 34333 347899999999999999999999999887653
No 22
>KOG1173|consensus
Probab=99.76 E-value=5.9e-17 Score=158.37 Aligned_cols=280 Identities=16% Similarity=0.131 Sum_probs=225.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhH
Q psy597 213 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDV 292 (546)
Q Consensus 213 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 292 (546)
.+.+.+...+..++..++|.+..+.+...++..+-...-+..-.. .+--..+........... ....|..
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia----~l~el~~~n~Lf~lsh~L------V~~yP~~ 311 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIA----CLYELGKSNKLFLLSHKL------VDLYPSK 311 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHH----HHHHhcccchHHHHHHHH------HHhCCCC
Confidence 456778888999999999999999999998865544321111000 110001111111100000 3367888
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q psy597 293 ATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKE 372 (546)
Q Consensus 293 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 372 (546)
+..|+..|..|...|++.+|..+|.++..+ ++..+.+|...|..|...|..++|+..|..|-++.
T Consensus 312 a~sW~aVg~YYl~i~k~seARry~SKat~l--------D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~------- 376 (611)
T KOG1173|consen 312 ALSWFAVGCYYLMIGKYSEARRYFSKATTL--------DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM------- 376 (611)
T ss_pred CcchhhHHHHHHHhcCcHHHHHHHHHHhhc--------CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-------
Confidence 899999999999999999999999999988 57778999999999999999999999999999986
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhc
Q psy597 373 HPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 452 (546)
Q Consensus 373 ~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~ 452 (546)
|..-.....+|.-|...+++.-|..+|.+|+.+ .|..+..+..+|.+.+..+.|.+|..+|+.++...+..
T Consensus 377 -~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai--------~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~ 447 (611)
T KOG1173|consen 377 -PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAI--------APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSV 447 (611)
T ss_pred -cCCcchHHHHHHHHHHhccHHHHHHHHHHHHhc--------CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhc
Confidence 444445677899999999999999999999999 78888899999999999999999999999999655542
Q ss_pred ccC---cccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q psy597 453 EFG---ACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRA 529 (546)
Q Consensus 453 ~~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~ 529 (546)
... .....+++|..++..+.+.+|+.+|++++.. .|..+.++..+|-+|..+|+++.|+++|.+++.+.
T Consensus 448 ~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l--------~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~ 519 (611)
T KOG1173|consen 448 LNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL--------SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALK 519 (611)
T ss_pred cccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc--------CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcC
Confidence 221 2223567888899999999999999999987 78889999999999999999999999999999998
Q ss_pred hhhcc
Q psy597 530 HEREF 534 (546)
Q Consensus 530 ~~~~~ 534 (546)
|.+.+
T Consensus 520 p~n~~ 524 (611)
T KOG1173|consen 520 PDNIF 524 (611)
T ss_pred CccHH
Confidence 87743
No 23
>KOG1130|consensus
Probab=99.75 E-value=6.3e-17 Score=152.02 Aligned_cols=267 Identities=19% Similarity=0.166 Sum_probs=221.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHHH
Q psy597 218 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLN 297 (546)
Q Consensus 218 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 297 (546)
+..-|.-+++.|++...+.+|+.|++.- ..+......+|.
T Consensus 20 LalEGERLck~gdcraGv~ff~aA~qvG----------------------------------------TeDl~tLSAIYs 59 (639)
T KOG1130|consen 20 LALEGERLCKMGDCRAGVDFFKAALQVG----------------------------------------TEDLSTLSAIYS 59 (639)
T ss_pred HHHHHHHHHhccchhhhHHHHHHHHHhc----------------------------------------chHHHHHHHHHH
Confidence 3456778899999999999999999851 224456778899
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHH
Q psy597 298 ILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVA 377 (546)
Q Consensus 298 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 377 (546)
.||.+|+..++|.+|+++-.--+.+.+.. ++....+.+..+||.++...|.|++|+.++.+-+.+.+.. ++.....
T Consensus 60 QLGNAyfyL~DY~kAl~yH~hDltlar~l--gdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areL--gDrv~e~ 135 (639)
T KOG1130|consen 60 QLGNAYFYLKDYEKALKYHTHDLTLARLL--GDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFAREL--GDRVLES 135 (639)
T ss_pred HhcchhhhHhhHHHHHhhhhhhHHHHHHh--cchhccccccccccchhhhhcccchHHHHHHHHhHHHHHH--hHHHhhh
Confidence 99999999999999999998888877766 5666667888999999999999999999999999999888 5556778
Q ss_pred HHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHH
Q psy597 378 KQLNNLALLCQNQSK--------------------YEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKE 437 (546)
Q Consensus 378 ~~~~~la~~~~~~g~--------------------~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~e 437 (546)
.+++|+|.+|...|+ ++.|.++|..-+++.++. +|......++.+||..|+-+|+|+.
T Consensus 136 RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~l--gDr~aqGRa~GnLGNTyYlLGdf~~ 213 (639)
T KOG1130|consen 136 RALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKL--GDRLAQGRAYGNLGNTYYLLGDFDQ 213 (639)
T ss_pred HHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHh--hhHHhhcchhcccCceeeeeccHHH
Confidence 999999999998775 345566666666665555 4455677899999999999999999
Q ss_pred HHHHHHHHHHhhhhccc--CcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCH
Q psy597 438 AEILYKQVLTRAHEREF--GACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKY 515 (546)
Q Consensus 438 A~~~~~~al~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~ 515 (546)
|+.+-+.-+.++.+.+. ..-....+++.++.-.|++..|.++|..++.+..+.. +....+...+.||..|.-..++
T Consensus 214 ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg--~r~vEAQscYSLgNtytll~e~ 291 (639)
T KOG1130|consen 214 AIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELG--NRTVEAQSCYSLGNTYTLLKEV 291 (639)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhc--chhHHHHHHHHhhhHHHHHHHH
Confidence 99999998888776332 2234567788889999999999999999998877763 3566778889999999999999
Q ss_pred HHHHHHHHHHHHHhhhh
Q psy597 516 KEAEILYKQVLTRAHER 532 (546)
Q Consensus 516 ~~A~~~~~~al~~~~~~ 532 (546)
++|+.|+.+-+.+..+-
T Consensus 292 ~kAI~Yh~rHLaIAqeL 308 (639)
T KOG1130|consen 292 QKAITYHQRHLAIAQEL 308 (639)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999988653
No 24
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.75 E-value=2.5e-16 Score=169.16 Aligned_cols=293 Identities=12% Similarity=0.052 Sum_probs=222.1
Q ss_pred CCCChhhHHHhhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHH
Q psy597 194 SPTPPSQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIV 273 (546)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~ 273 (546)
......+...........|..+.+++.+|.+....|++++|+..|++++...|.... +.......+....+...+.
T Consensus 55 ~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~----a~~~la~~l~~~g~~~~Ai 130 (656)
T PRK15174 55 KDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPE----DVLLVASVLLKSKQYATVA 130 (656)
T ss_pred cCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChH----HHHHHHHHHHHcCCHHHHH
Confidence 344555666666667778999999999999999999999999999999987665431 2222222222223333333
Q ss_pred HHHHHHHHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHH
Q psy597 274 KQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKE 353 (546)
Q Consensus 274 ~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~ 353 (546)
..+..+. ...|....++..+|.++...|++++|+..+.+++... +++ ..++..++ .+...|++++
T Consensus 131 ~~l~~Al------~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-----P~~---~~a~~~~~-~l~~~g~~~e 195 (656)
T PRK15174 131 DLAEQAW------LAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-----PPR---GDMIATCL-SFLNKSRLPE 195 (656)
T ss_pred HHHHHHH------HhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-----CCC---HHHHHHHH-HHHHcCCHHH
Confidence 3333322 1346667788889999999999999999998777653 222 33444443 4788899999
Q ss_pred HHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC
Q psy597 354 AEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQG 433 (546)
Q Consensus 354 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g 433 (546)
|+..+++++... ++........++.++...|++++|+..|++++.. .|....++.++|.+|...|
T Consensus 196 A~~~~~~~l~~~-------~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~Lg~~l~~~G 260 (656)
T PRK15174 196 DHDLARALLPFF-------ALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--------GLDGAALRRSLGLAYYQSG 260 (656)
T ss_pred HHHHHHHHHhcC-------CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcC
Confidence 999998887652 1122234456788899999999999999999987 6777889999999999999
Q ss_pred CHHH----HHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q psy597 434 KYKE----AEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCY 509 (546)
Q Consensus 434 ~~~e----A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y 509 (546)
++++ |+..|++++...|... ......+..+...|++++|...+++++.. .|....++..+|.+|
T Consensus 261 ~~~eA~~~A~~~~~~Al~l~P~~~----~a~~~lg~~l~~~g~~~eA~~~l~~al~l--------~P~~~~a~~~La~~l 328 (656)
T PRK15174 261 RSREAKLQAAEHWRHALQFNSDNV----RIVTLYADALIRTGQNEKAIPLLQQSLAT--------HPDLPYVRAMYARAL 328 (656)
T ss_pred CchhhHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHH
Confidence 9986 8999999999866432 34556677789999999999999999987 677778899999999
Q ss_pred HHcCCHHHHHHHHHHHHHHhhhh
Q psy597 510 LKQGKYKEAEILYKQVLTRAHER 532 (546)
Q Consensus 510 ~~~g~~~~A~~~~~~al~~~~~~ 532 (546)
...|++++|+..|++++...|..
T Consensus 329 ~~~G~~~eA~~~l~~al~~~P~~ 351 (656)
T PRK15174 329 RQVGQYTAASDEFVQLAREKGVT 351 (656)
T ss_pred HHCCCHHHHHHHHHHHHHhCccc
Confidence 99999999999999999876643
No 25
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.74 E-value=4.7e-16 Score=136.29 Aligned_cols=209 Identities=22% Similarity=0.242 Sum_probs=169.1
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChh
Q psy597 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPD 291 (546)
Q Consensus 212 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (546)
.....+...+|..|+..|++..|...+++|++ .+|.
T Consensus 32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~--------------------------------------------~DPs 67 (250)
T COG3063 32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALE--------------------------------------------HDPS 67 (250)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--------------------------------------------hCcc
Confidence 44567788889999999999999999999988 4677
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 371 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 371 (546)
...++..+|.+|...|+.+.|.+.|++|+.+ +|...++++|.|..++.+|+|++|...|++|+.. +
T Consensus 68 ~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--------~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~------P 133 (250)
T COG3063 68 YYLAHLVRAHYYQKLGENDLADESYRKALSL--------APNNGDVLNNYGAFLCAQGRPEEAMQQFERALAD------P 133 (250)
T ss_pred cHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--------CCCccchhhhhhHHHHhCCChHHHHHHHHHHHhC------C
Confidence 8888899999999999999999999999988 5666888999999999999999999999998876 5
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 372 EHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 372 ~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
..+....++.|+|.|..+.|+++.|..+|++++++ +|..+.+...++...+..|+|..|..+++.....
T Consensus 134 ~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--------dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~--- 202 (250)
T COG3063 134 AYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--------DPQFPPALLELARLHYKAGDYAPARLYLERYQQR--- 202 (250)
T ss_pred CCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--------CcCCChHHHHHHHHHHhcccchHHHHHHHHHHhc---
Confidence 66777888899999999999999999999999988 7888888888999999999999998888776553
Q ss_pred cccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q psy597 452 REFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 531 (546)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~ 531 (546)
.+..+..+.....+-...|+-+.|..|=.+.-+.+|.
T Consensus 203 -------------------------------------------~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~ 239 (250)
T COG3063 203 -------------------------------------------GGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPY 239 (250)
T ss_pred -------------------------------------------ccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 1233445555556666677777777776666666654
Q ss_pred h
Q psy597 532 R 532 (546)
Q Consensus 532 ~ 532 (546)
.
T Consensus 240 s 240 (250)
T COG3063 240 S 240 (250)
T ss_pred c
Confidence 3
No 26
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.72 E-value=4.5e-16 Score=171.08 Aligned_cols=264 Identities=11% Similarity=0.010 Sum_probs=187.6
Q ss_pred hhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhc
Q psy597 204 QVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILG 283 (546)
Q Consensus 204 ~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 283 (546)
........|... ....+|..+...|++++|+..|++++...+. ..+.......+....+...+......+..
T Consensus 499 ~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~-----~~a~~~la~all~~Gd~~eA~~~l~qAL~-- 570 (987)
T PRK09782 499 WLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMS-----NEDLLAAANTAQAAGNGAARDRWLQQAEQ-- 570 (987)
T ss_pred HHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCC-----cHHHHHHHHHHHHCCCHHHHHHHHHHHHh--
Confidence 333333445433 3666777888999999999999987553111 11111111111222222222222222221
Q ss_pred cCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 284 SGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALE 363 (546)
Q Consensus 284 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 363 (546)
..|.....+..++......|++++|+..|++++.+ .|. ..++.++|.++...|++++|+..|++++.
T Consensus 571 ----l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--------~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~ 637 (987)
T PRK09782 571 ----RGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--------APS-ANAYVARATIYRQRHNVPAAVSDLRAALE 637 (987)
T ss_pred ----cCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--------CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 22444555556666666779999999999999987 343 67899999999999999999999999999
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy597 364 IREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYK 443 (546)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~ 443 (546)
+. |....++.++|.++...|++++|+..|++++++ .|..+.++.++|.++...|++++|+.+|+
T Consensus 638 l~--------Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--------~P~~~~a~~nLA~al~~lGd~~eA~~~l~ 701 (987)
T PRK09782 638 LE--------PNNSNYQAALGYALWDSGDIAQSREMLERAHKG--------LPDDPALIRQLAYVNQRLDDMAATQHYAR 701 (987)
T ss_pred hC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 94 888899999999999999999999999999998 88889999999999999999999999999
Q ss_pred HHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHH
Q psy597 444 QVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKE 517 (546)
Q Consensus 444 ~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~ 517 (546)
+++...|+.. ......++......++..+...+.++..+ .+... +....|.++...+++-.
T Consensus 702 ~Al~l~P~~a----~i~~~~g~~~~~~~~~~~a~~~~~r~~~~--------~~~~~-a~~~~g~~~~~~~~~~~ 762 (987)
T PRK09782 702 LVIDDIDNQA----LITPLTPEQNQQRFNFRRLHEEVGRRWTF--------SFDSS-IGLRSGAMSTANNNVGG 762 (987)
T ss_pred HHHhcCCCCc----hhhhhhhHHHHHHHHHHHHHHHHHHHhhc--------Cccch-hccccchHhhhcccccC
Confidence 9999865432 22334444455555555555555555543 44444 77888999999888744
No 27
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.71 E-value=3.9e-16 Score=151.48 Aligned_cols=209 Identities=17% Similarity=0.105 Sum_probs=158.6
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
+++..+..++.+|.+|...|++++|+..|.+++.+ .|..+.+++.+|.++...|++++|+..|++++++
T Consensus 59 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--- 127 (296)
T PRK11189 59 TDEERAQLHYERGVLYDSLGLRALARNDFSQALAL--------RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--- 127 (296)
T ss_pred CcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---
Confidence 44566888999999999999999999999999987 4555789999999999999999999999999998
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 368 VLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 447 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~ 447 (546)
.|....++.++|.++...|++++|+..|++++++ +|..+.. .....+....+++++|+..|.++..
T Consensus 128 -----~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--------~P~~~~~-~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 128 -----DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--------DPNDPYR-ALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred -----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHH-HHHHHHHHccCCHHHHHHHHHHHHh
Confidence 4778889999999999999999999999999987 3433321 1112234567899999999988765
Q ss_pred hhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 448 RAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 527 (546)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~ 527 (546)
..+.. ....+......|+...+ ..+..+...+..... -.|....+|+.+|.+|...|++++|+.+|++|++
T Consensus 194 ~~~~~-------~~~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~-l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 194 KLDKE-------QWGWNIVEFYLGKISEE-TLMERLKAGATDNTE-LAERLCETYFYLAKYYLSLGDLDEAAALFKLALA 264 (296)
T ss_pred hCCcc-------ccHHHHHHHHccCCCHH-HHHHHHHhcCCCcHH-HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 43211 11123444555665443 233333322110000 0355678999999999999999999999999999
Q ss_pred Hhh
Q psy597 528 RAH 530 (546)
Q Consensus 528 ~~~ 530 (546)
..|
T Consensus 265 ~~~ 267 (296)
T PRK11189 265 NNV 267 (296)
T ss_pred hCC
Confidence 875
No 28
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.69 E-value=9e-16 Score=134.52 Aligned_cols=172 Identities=28% Similarity=0.338 Sum_probs=154.3
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
+....+.+...||.-|+..|++..|...+++|++. +|....++..+|.+|...|+.+.|.+.|++|+.+
T Consensus 30 ~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~--------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--- 98 (250)
T COG3063 30 DRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEH--------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSL--- 98 (250)
T ss_pred cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc---
Confidence 34566788999999999999999999999999988 6777889999999999999999999999999999
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 368 VLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 447 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~ 447 (546)
+|..+.+++|.|..++.+|+|++|..+|++|+.. |..+..+.++.|+|.|..+.|+++.|..+|++++.
T Consensus 99 -----~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~------P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~ 167 (250)
T COG3063 99 -----APNNGDVLNNYGAFLCAQGRPEEAMQQFERALAD------PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE 167 (250)
T ss_pred -----CCCccchhhhhhHHHHhCCChHHHHHHHHHHHhC------CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH
Confidence 4889999999999999999999999999999987 77788899999999999999999999999999998
Q ss_pred hhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 448 RAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 527 (546)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~ 527 (546)
. +|........++..++..|+|..|..++++...
T Consensus 168 ~----------------------------------------------dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~ 201 (250)
T COG3063 168 L----------------------------------------------DPQFPPALLELARLHYKAGDYAPARLYLERYQQ 201 (250)
T ss_pred h----------------------------------------------CcCCChHHHHHHHHHHhcccchHHHHHHHHHHh
Confidence 6 455556677888888888999988888887654
No 29
>KOG1129|consensus
Probab=99.69 E-value=5.5e-16 Score=141.74 Aligned_cols=237 Identities=17% Similarity=0.152 Sum_probs=200.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHHHH
Q psy597 219 HNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNI 298 (546)
Q Consensus 219 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 298 (546)
..+|.||++.|-+.+|.+.++.+++- ...++.+..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q---------------------------------------------~~~~dTfll 261 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ---------------------------------------------FPHPDTFLL 261 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc---------------------------------------------CCchhHHHH
Confidence 56899999999999999999999872 223455778
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Q psy597 299 LALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAK 378 (546)
Q Consensus 299 la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 378 (546)
|+.+|....+...|+..|.+.++.+ |.....+..++.++..++++++|.++|+.+++. +|....
T Consensus 262 LskvY~ridQP~~AL~~~~~gld~f--------P~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~--------~~~nvE 325 (478)
T KOG1129|consen 262 LSKVYQRIDQPERALLVIGEGLDSF--------PFDVTYLLGQARIHEAMEQQEDALQLYKLVLKL--------HPINVE 325 (478)
T ss_pred HHHHHHHhccHHHHHHHHhhhhhcC--------CchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhc--------CCccce
Confidence 8999999999999999999988764 555777888999999999999999999999987 577788
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCccc
Q psy597 379 QLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACD 458 (546)
Q Consensus 379 ~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~ 458 (546)
+...+|.-|+..++++-|+.+|++.+.+ ....+..+.|+|.|++..++++-++..|++++..+...+ ...+
T Consensus 326 aiAcia~~yfY~~~PE~AlryYRRiLqm--------G~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~-~aaD 396 (478)
T KOG1129|consen 326 AIACIAVGYFYDNNPEMALRYYRRILQM--------GAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPG-QAAD 396 (478)
T ss_pred eeeeeeeccccCCChHHHHHHHHHHHHh--------cCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcc-hhhh
Confidence 8888888999999999999999999988 556677889999999999999999999999998765433 2335
Q ss_pred CCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhc
Q psy597 459 GDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHERE 533 (546)
Q Consensus 459 ~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~~~ 533 (546)
.+.+++......|++..|..+|+-++.. ++....++.+||.+-.+.|+.++|..++..|-...|...
T Consensus 397 vWYNlg~vaV~iGD~nlA~rcfrlaL~~--------d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~ 463 (478)
T KOG1129|consen 397 VWYNLGFVAVTIGDFNLAKRCFRLALTS--------DAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMA 463 (478)
T ss_pred hhhccceeEEeccchHHHHHHHHHHhcc--------CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccc
Confidence 5666666677788999999999888854 788999999999999999999999999999998887653
No 30
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.68 E-value=4e-16 Score=151.02 Aligned_cols=239 Identities=23% Similarity=0.227 Sum_probs=114.8
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCCh
Q psy597 211 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHP 290 (546)
Q Consensus 211 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 290 (546)
.|.+...|..+|......++++.|+..|++++.. ++
T Consensus 40 ~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~--------------------------------------------~~ 75 (280)
T PF13429_consen 40 PPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLAS--------------------------------------------DK 75 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccc--------------------------------------------cc
Confidence 3667778888888888888888888888888763 22
Q ss_pred hHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q psy597 291 DVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 370 (546)
Q Consensus 291 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 370 (546)
..+..+..++.+ ...+++++|+.++.++.+.. .....+.....++...|+++++...+.++...
T Consensus 76 ~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~---------~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~------ 139 (280)
T PF13429_consen 76 ANPQDYERLIQL-LQDGDPEEALKLAEKAYERD---------GDPRYLLSALQLYYRLGDYDEAEELLEKLEEL------ 139 (280)
T ss_dssp ----------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-------
T ss_pred cccccccccccc-cccccccccccccccccccc---------cccchhhHHHHHHHHHhHHHHHHHHHHHHHhc------
Confidence 334445666666 68899999999998887642 11344566777889999999999999997753
Q ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q psy597 371 KEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAH 450 (546)
Q Consensus 371 ~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~ 450 (546)
...+.....+..+|.++...|++++|+.+|+++++. .|....+...++.++...|+++++...+.......+
T Consensus 140 ~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--------~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~ 211 (280)
T PF13429_consen 140 PAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--------DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAP 211 (280)
T ss_dssp T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-H
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCc
Confidence 223567888999999999999999999999999999 888888999999999999999998888888777654
Q ss_pred hcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q psy597 451 EREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRA 529 (546)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~ 529 (546)
.++ ......++++...|+++.|..+|++++.. .|..+..+..+|.++...|++++|..++++++...
T Consensus 212 ~~~----~~~~~la~~~~~lg~~~~Al~~~~~~~~~--------~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~l 278 (280)
T PF13429_consen 212 DDP----DLWDALAAAYLQLGRYEEALEYLEKALKL--------NPDDPLWLLAYADALEQAGRKDEALRLRRQALRLL 278 (280)
T ss_dssp TSC----CHCHHHHHHHHHHT-HHHHHHHHHHHHHH--------STT-HHHHHHHHHHHT-------------------
T ss_pred CHH----HHHHHHHHHhccccccccccccccccccc--------ccccccccccccccccccccccccccccccccccc
Confidence 433 34556788899999999999999999987 78888999999999999999999999999998754
No 31
>KOG2002|consensus
Probab=99.68 E-value=2.1e-14 Score=148.66 Aligned_cols=303 Identities=19% Similarity=0.151 Sum_probs=227.4
Q ss_pred hhHHHhhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCch--------------hHHHhhHHHHHh
Q psy597 199 SQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKY--------------EAAETLEDCALR 264 (546)
Q Consensus 199 ~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------------~~a~~~~~~~l~ 264 (546)
.+...+.-....+|.++-.+...|.+.+..|+|-.|+.+|+.++.+.|....+. ..|...+.+++.
T Consensus 148 ~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralq 227 (1018)
T KOG2002|consen 148 DADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQ 227 (1018)
T ss_pred HHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHh
Confidence 355556666778899999999999999999999999999999999877665332 223333333332
Q ss_pred hhhhhHHHH--------------HHHHHHHHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCC
Q psy597 265 SRKESYDIV--------------KQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGEN 330 (546)
Q Consensus 265 ~~~~~~~~~--------------~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~ 330 (546)
..+....+. ..-.....+.+.....+..+.++..|+..|+..|+|..+..+...++... ..
T Consensus 228 Ldp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t-----~~ 302 (1018)
T KOG2002|consen 228 LDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNT-----EN 302 (1018)
T ss_pred cChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh-----hh
Confidence 222211111 01111122222233456667789999999999999999999999998775 34
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy597 331 HAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELK 410 (546)
Q Consensus 331 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~ 410 (546)
.+..+..++.+|.+|..+|+|++|..+|.+++... + ......+..+|..|...|+++.|+.+|++.+..
T Consensus 303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~-----~--d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~---- 371 (1018)
T KOG2002|consen 303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD-----N--DNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ---- 371 (1018)
T ss_pred hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC-----C--CCccccccchhHHHHHhchHHHHHHHHHHHHHh----
Confidence 56778899999999999999999999999998874 1 224777889999999999999999999999998
Q ss_pred cCCCChHHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHH
Q psy597 411 LGPDDSNVAKTKNNLASCYLKQG----KYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEI 486 (546)
Q Consensus 411 ~~~~~~~~~~~~~~La~~y~~~g----~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~ 486 (546)
.|+...+...||.+|...+ ..+.|..+..+++...+.+. ..+..++. .+..++...++..|..|+.+
T Consensus 372 ----~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~----~a~l~laq-l~e~~d~~~sL~~~~~A~d~ 442 (1018)
T KOG2002|consen 372 ----LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDS----EAWLELAQ-LLEQTDPWASLDAYGNALDI 442 (1018)
T ss_pred ----CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccH----HHHHHHHH-HHHhcChHHHHHHHHHHHHH
Confidence 7888889999999998886 56788888888887643221 11111121 45567777779999999998
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q psy597 487 YELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRA 529 (546)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~ 529 (546)
+...... .-+..++++|..++..|++.+|...|..|+...
T Consensus 443 L~~~~~~---ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~ 482 (1018)
T KOG2002|consen 443 LESKGKQ---IPPEVLNNVASLHFRLGNIEKALEHFKSALGKL 482 (1018)
T ss_pred HHHcCCC---CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhh
Confidence 8776543 346788999999999999999999999999873
No 32
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.68 E-value=2e-14 Score=157.72 Aligned_cols=312 Identities=12% Similarity=0.027 Sum_probs=210.3
Q ss_pred ChhhHHHhhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-------------CchhHHHhhHHHHH
Q psy597 197 PPSQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTS-------------GKYEAAETLEDCAL 263 (546)
Q Consensus 197 ~~~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-------------~~~~~a~~~~~~~l 263 (546)
...+...+.+.....|.++. +..+|.++...|++++|+..++++++..|... +..+.|...+....
T Consensus 99 ~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~ 177 (765)
T PRK10049 99 YDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDAN 177 (765)
T ss_pred HHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCC
Confidence 34455555555556677777 88888888888888888888888888655432 11222222221111
Q ss_pred hh---------hhh--------------------hHHHHHHHHHHHHh-ccCCCCChhHHHHHHHHHHHHHHhhcHHHHH
Q psy597 264 RS---------RKE--------------------SYDIVKQAKVAQIL-GSGGHDHPDVATMLNILALVYRDQNKYKEAA 313 (546)
Q Consensus 264 ~~---------~~~--------------------~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 313 (546)
.. ... ...+.......... .......+....+......++...|++++|+
T Consensus 178 ~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~ 257 (765)
T PRK10049 178 LTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVI 257 (765)
T ss_pred CCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHH
Confidence 00 000 00111111111111 1111222333444443233446779999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHHcCC
Q psy597 314 NLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEH-PDVAKQLNNLALLCQNQSK 392 (546)
Q Consensus 314 ~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~ 392 (546)
..|++++... +..|..+..+ +|.+|...|++++|+.+|++++... +.. +........++.++...|+
T Consensus 258 ~~~~~ll~~~-----~~~P~~a~~~--la~~yl~~g~~e~A~~~l~~~l~~~-----p~~~~~~~~~~~~L~~a~~~~g~ 325 (765)
T PRK10049 258 SEYQRLKAEG-----QIIPPWAQRW--VASAYLKLHQPEKAQSILTELFYHP-----ETIADLSDEELADLFYSLLESEN 325 (765)
T ss_pred HHHHHhhccC-----CCCCHHHHHH--HHHHHHhcCCcHHHHHHHHHHhhcC-----CCCCCCChHHHHHHHHHHHhccc
Confidence 9999988652 2234443333 5899999999999999999988642 111 1123556778888899999
Q ss_pred HHHHHHHHHHHHHHHHHh-----cCCCCh--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhH
Q psy597 393 YEEVERYYQRALEIYELK-----LGPDDS--NVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIW 465 (546)
Q Consensus 393 ~~eA~~~~~~al~~~~~~-----~~~~~~--~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~ 465 (546)
+++|+.+++++....... .....| ....++..+|.++...|++++|+..+++++...|.+. ......+.
T Consensus 326 ~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~----~l~~~lA~ 401 (765)
T PRK10049 326 YPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQ----GLRIDYAS 401 (765)
T ss_pred HHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHH
Confidence 999999999998762100 000011 3456788999999999999999999999999876653 34556666
Q ss_pred HHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhc
Q psy597 466 QDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHERE 533 (546)
Q Consensus 466 ~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~~~ 533 (546)
++...|++..|+..+++++.+ .|....++..+|.++...|++++|...++++++..|+++
T Consensus 402 l~~~~g~~~~A~~~l~~al~l--------~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 402 VLQARGWPRAAENELKKAEVL--------EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred HHHhcCCHHHHHHHHHHHHhh--------CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence 788899999999999999987 788888999999999999999999999999999888764
No 33
>KOG1173|consensus
Probab=99.67 E-value=1.6e-15 Score=148.41 Aligned_cols=217 Identities=20% Similarity=0.215 Sum_probs=190.5
Q ss_pred hhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhcc
Q psy597 205 VNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGS 284 (546)
Q Consensus 205 ~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~ 284 (546)
-+.....|..+..|+.+|..|...|++.+|..+|.++..
T Consensus 302 h~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~----------------------------------------- 340 (611)
T KOG1173|consen 302 HKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATT----------------------------------------- 340 (611)
T ss_pred HHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhh-----------------------------------------
Confidence 344567899999999999999999999999999999977
Q ss_pred CCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 285 GGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 364 (546)
Q Consensus 285 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 364 (546)
-++..+.+|...|..|...|..++|+..|..|-++++.. ......+|.-|..+++++.|..+|..|+.+
T Consensus 341 ---lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~--------hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai 409 (611)
T KOG1173|consen 341 ---LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGC--------HLPSLYLGMEYMRTNNLKLAEKFFKQALAI 409 (611)
T ss_pred ---cCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCC--------cchHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 467788899999999999999999999999999987543 234667899999999999999999999999
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy597 365 REKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQ 444 (546)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~ 444 (546)
+ |..+.++..+|.+.+..+.|.+|..+|+.++...+..... .+....++.|||.+|.+++++.+|+.+|++
T Consensus 410 ~--------P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e-~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~ 480 (611)
T KOG1173|consen 410 A--------PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNE-KIFWEPTLNNLGHAYRKLNKYEEAIDYYQK 480 (611)
T ss_pred C--------CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccc-ccchhHHHHhHHHHHHHHhhHHHHHHHHHH
Confidence 6 8888999999999999999999999999999776665333 335667899999999999999999999999
Q ss_pred HHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHH
Q psy597 445 VLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEI 486 (546)
Q Consensus 445 al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~ 486 (546)
++...+.+. ......+.++...|+++.|+.+|.+|+.+
T Consensus 481 aL~l~~k~~----~~~asig~iy~llgnld~Aid~fhKaL~l 518 (611)
T KOG1173|consen 481 ALLLSPKDA----STHASIGYIYHLLGNLDKAIDHFHKALAL 518 (611)
T ss_pred HHHcCCCch----hHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 999866543 55677888899999999999999999977
No 34
>PRK12370 invasion protein regulator; Provisional
Probab=99.67 E-value=1.8e-14 Score=152.27 Aligned_cols=208 Identities=14% Similarity=0.018 Sum_probs=168.0
Q ss_pred CChhHHHHHHHHHHHHHHhh---------cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQN---------KYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLC 358 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g---------~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 358 (546)
.+|..+.++..+|.+|...+ ++++|...+++++++ +|..+.++..+|.++...|++++|+..|
T Consensus 290 ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l--------dP~~~~a~~~lg~~~~~~g~~~~A~~~~ 361 (553)
T PRK12370 290 MSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL--------DHNNPQALGLLGLINTIHSEYIVGSLLF 361 (553)
T ss_pred cCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHccCHHHHHHHH
Confidence 45667778888888877543 489999999999988 4555788999999999999999999999
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHH
Q psy597 359 KRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEA 438 (546)
Q Consensus 359 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA 438 (546)
++++++. |..+.+++.+|.++...|++++|+..+++++++ +|....++..++.+++..|++++|
T Consensus 362 ~~Al~l~--------P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--------~P~~~~~~~~~~~~~~~~g~~eeA 425 (553)
T PRK12370 362 KQANLLS--------PISADIKYYYGWNLFMAGQLEEALQTINECLKL--------DPTRAAAGITKLWITYYHTGIDDA 425 (553)
T ss_pred HHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCChhhHHHHHHHHHhccCHHHH
Confidence 9999994 888889999999999999999999999999998 666655666677778889999999
Q ss_pred HHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHH
Q psy597 439 EILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEA 518 (546)
Q Consensus 439 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A 518 (546)
+..+++++...+... .......+.++...|++++|...+.+.... .|........++.+|...|+ +|
T Consensus 426 ~~~~~~~l~~~~p~~---~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~--~a 492 (553)
T PRK12370 426 IRLGDELRSQHLQDN---PILLSMQVMFLSLKGKHELARKLTKEISTQ--------EITGLIAVNLLYAEYCQNSE--RA 492 (553)
T ss_pred HHHHHHHHHhccccC---HHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--------cchhHHHHHHHHHHHhccHH--HH
Confidence 999999887642211 122345666788899999999998776544 56677778889999988884 88
Q ss_pred HHHHHHHHHHhhhh
Q psy597 519 EILYKQVLTRAHER 532 (546)
Q Consensus 519 ~~~~~~al~~~~~~ 532 (546)
...+++.++.....
T Consensus 493 ~~~l~~ll~~~~~~ 506 (553)
T PRK12370 493 LPTIREFLESEQRI 506 (553)
T ss_pred HHHHHHHHHHhhHh
Confidence 88888877655443
No 35
>PRK12370 invasion protein regulator; Provisional
Probab=99.65 E-value=1.5e-14 Score=152.95 Aligned_cols=248 Identities=13% Similarity=0.026 Sum_probs=187.5
Q ss_pred hhHHHhhhcCCCchHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhh
Q psy597 199 SQFAQQVNAGYEIPARLRTLHNLVIQYASQ---------GRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKES 269 (546)
Q Consensus 199 ~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~ 269 (546)
.+...+.+....+|..+.++..+|.+|... +++++|+..++++++
T Consensus 279 ~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~-------------------------- 332 (553)
T PRK12370 279 QALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE-------------------------- 332 (553)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh--------------------------
Confidence 455566677778899999999999887644 347899999999988
Q ss_pred HHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC
Q psy597 270 YDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRG 349 (546)
Q Consensus 270 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g 349 (546)
..|..+.++..+|.++...|++++|+..|++++.+ .|..+.+++.+|.++...|
T Consensus 333 ------------------ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~G 386 (553)
T PRK12370 333 ------------------LDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL--------SPISADIKYYYGWNLFMAG 386 (553)
T ss_pred ------------------cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCC
Confidence 35677788999999999999999999999999998 4555778999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q psy597 350 KYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCY 429 (546)
Q Consensus 350 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y 429 (546)
++++|+..+++++++. |.....+..++.+++..|++++|+..+++++.. ..|..+..+.++|.+|
T Consensus 387 ~~~eAi~~~~~Al~l~--------P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~-------~~p~~~~~~~~la~~l 451 (553)
T PRK12370 387 QLEEALQTINECLKLD--------PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQ-------HLQDNPILLSMQVMFL 451 (553)
T ss_pred CHHHHHHHHHHHHhcC--------CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHh-------ccccCHHHHHHHHHHH
Confidence 9999999999999984 555555556677788899999999999999875 1356677889999999
Q ss_pred HHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q psy597 430 LKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCY 509 (546)
Q Consensus 430 ~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y 509 (546)
..+|++++|...+.++....+.. ......++..+...| +.|...+.+.++..... ......+..+|
T Consensus 452 ~~~G~~~eA~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~--------~~~~~~~~~~~ 517 (553)
T PRK12370 452 SLKGKHELARKLTKEISTQEITG----LIAVNLLYAEYCQNS--ERALPTIREFLESEQRI--------DNNPGLLPLVL 517 (553)
T ss_pred HhCCCHHHHHHHHHHhhhccchh----HHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh--------hcCchHHHHHH
Confidence 99999999999998876543221 111222233344444 35666666655443211 11223378888
Q ss_pred HHcCCHHHHHHHHHHHHHH
Q psy597 510 LKQGKYKEAEILYKQVLTR 528 (546)
Q Consensus 510 ~~~g~~~~A~~~~~~al~~ 528 (546)
.-.|+.+.|..+ +++.+.
T Consensus 518 ~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 518 VAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HHHhhhHHHHHH-HHhhcc
Confidence 889999888877 666553
No 36
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.64 E-value=6.2e-16 Score=149.71 Aligned_cols=237 Identities=22% Similarity=0.262 Sum_probs=99.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHHHH
Q psy597 219 HNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNI 298 (546)
Q Consensus 219 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 298 (546)
+.+|.+++..|++++|+..+.+.+.. ..++.....|..
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~------------------------------------------~~~~~~~~~~~~ 49 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQK------------------------------------------IAPPDDPEYWRL 49 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccc------------------------------------------cccccccccccc
Confidence 36699999999999999999776652 124566678889
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Q psy597 299 LALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAK 378 (546)
Q Consensus 299 la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 378 (546)
+|.+....++++.|+..|++++... +.....+..++.+ ...+++++|..++.++.+.. ....
T Consensus 50 ~a~La~~~~~~~~A~~ay~~l~~~~--------~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~---------~~~~ 111 (280)
T PF13429_consen 50 LADLAWSLGDYDEAIEAYEKLLASD--------KANPQDYERLIQL-LQDGDPEEALKLAEKAYERD---------GDPR 111 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccc--------ccccccccccccc-cccccccccccccccccccc---------cccc
Confidence 9999999999999999999998763 3345567777777 79999999999999887652 2344
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCccc
Q psy597 379 QLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACD 458 (546)
Q Consensus 379 ~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~ 458 (546)
.+..+..++...|+++++...++++... +..+..+..+..+|.++.+.|++++|+..|++++...|.+. .
T Consensus 112 ~l~~~l~~~~~~~~~~~~~~~l~~~~~~------~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~----~ 181 (280)
T PF13429_consen 112 YLLSALQLYYRLGDYDEAEELLEKLEEL------PAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDP----D 181 (280)
T ss_dssp ------H-HHHTT-HHHHHHHHHHHHH-------T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-H----H
T ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHhc------cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH----H
Confidence 4566777889999999999999998754 22456778899999999999999999999999999987654 2
Q ss_pred CCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhc
Q psy597 459 GDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHERE 533 (546)
Q Consensus 459 ~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~~~ 533 (546)
.....+|.+...|+..++...+...... .|..+..+..+|.+|...|++++|+.+|+++++..|.++
T Consensus 182 ~~~~l~~~li~~~~~~~~~~~l~~~~~~--------~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 182 ARNALAWLLIDMGDYDEAREALKRLLKA--------APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHH---------HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHH--------CcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 3445677788889888876666665544 244445677899999999999999999999999887653
No 37
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.63 E-value=3.3e-14 Score=133.16 Aligned_cols=174 Identities=28% Similarity=0.375 Sum_probs=149.5
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
+....+..+..+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|+.++++++...
T Consensus 26 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-- 95 (234)
T TIGR02521 26 DRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-- 95 (234)
T ss_pred cCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--
Confidence 45566888999999999999999999999999876 34456788999999999999999999999999873
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 368 VLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 447 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~ 447 (546)
|.....+.++|.++...|++++|+.+|.+++.. +..+.....+.++|.++...|++++|..++.+++.
T Consensus 96 ------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 163 (234)
T TIGR02521 96 ------PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIED------PLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ 163 (234)
T ss_pred ------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhc------cccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 556678899999999999999999999999875 22455567788899999999999999999999887
Q ss_pred hhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 448 RAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 527 (546)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~ 527 (546)
. .|.....+..+|.++...|++++|..++++++.
T Consensus 164 ~----------------------------------------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 197 (234)
T TIGR02521 164 I----------------------------------------------DPQRPESLLELAELYYLRGQYKDARAYLERYQQ 197 (234)
T ss_pred h----------------------------------------------CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5 233345677899999999999999999999998
Q ss_pred Hh
Q psy597 528 RA 529 (546)
Q Consensus 528 ~~ 529 (546)
..
T Consensus 198 ~~ 199 (234)
T TIGR02521 198 TY 199 (234)
T ss_pred hC
Confidence 73
No 38
>KOG2002|consensus
Probab=99.62 E-value=6.3e-14 Score=145.25 Aligned_cols=219 Identities=17% Similarity=0.142 Sum_probs=155.6
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
..+..+..++++|.+|..+|+|++|..+|.+++... +++ ..-.++.+|.+|...|+++.|..+|++.+...
T Consensus 302 ~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~-----~d~--~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-- 372 (1018)
T KOG2002|consen 302 NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD-----NDN--FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-- 372 (1018)
T ss_pred hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC-----CCC--ccccccchhHHHHHhchHHHHHHHHHHHHHhC--
Confidence 456778889999999999999999999999998763 222 35678899999999999999999999998874
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy597 368 VLGKEHPDVAKQLNNLALLCQNQS----KYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYK 443 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~~~g----~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~ 443 (546)
|+...++..||.+|...+ ..+.|..+..++++. .|....+|..+|.+|... +...++.+|.
T Consensus 373 ------p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~--------~~~d~~a~l~laql~e~~-d~~~sL~~~~ 437 (1018)
T KOG2002|consen 373 ------PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ--------TPVDSEAWLELAQLLEQT-DPWASLDAYG 437 (1018)
T ss_pred ------cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc--------ccccHHHHHHHHHHHHhc-ChHHHHHHHH
Confidence 777777777887777665 556667777777665 566777777777776543 4444477777
Q ss_pred HHHHhhhhcc-cCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHHHHcCCHHHHHH
Q psy597 444 QVLTRAHERE-FGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDD--SNVAKTKNNLASCYLKQGKYKEAEI 520 (546)
Q Consensus 444 ~al~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~--~~~~~~~~~La~~y~~~g~~~~A~~ 520 (546)
.|+.+..... .......++.+..+...|.+..|...|..|+..+......+. .......+++|.++...++++.|.+
T Consensus 438 ~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e 517 (1018)
T KOG2002|consen 438 NALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEE 517 (1018)
T ss_pred HHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHH
Confidence 7776554422 223334556666677777777777777777776443333222 1234456777777777777777777
Q ss_pred HHHHHHHHhh
Q psy597 521 LYKQVLTRAH 530 (546)
Q Consensus 521 ~~~~al~~~~ 530 (546)
.|...++..|
T Consensus 518 ~Yk~Ilkehp 527 (1018)
T KOG2002|consen 518 MYKSILKEHP 527 (1018)
T ss_pred HHHHHHHHCc
Confidence 7777777654
No 39
>KOG1155|consensus
Probab=99.61 E-value=1.2e-13 Score=132.40 Aligned_cols=173 Identities=19% Similarity=0.183 Sum_probs=157.7
Q ss_pred CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCC
Q psy597 209 YEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHD 288 (546)
Q Consensus 209 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 288 (546)
..+--++++...+|+.|.-.++.++|+.+|++|+++
T Consensus 324 ~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL-------------------------------------------- 359 (559)
T KOG1155|consen 324 NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL-------------------------------------------- 359 (559)
T ss_pred HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--------------------------------------------
Confidence 334556778888999999999999999999999994
Q ss_pred ChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy597 289 HPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 368 (546)
Q Consensus 289 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 368 (546)
+|....+|..+|.-|..+.+...|+..|+.|+++ .|..-.+|+.||..|.-++.+.=|+-+|++|+...
T Consensus 360 Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi--------~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k--- 428 (559)
T KOG1155|consen 360 NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI--------NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK--- 428 (559)
T ss_pred CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc--------CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC---
Confidence 6778889999999999999999999999999998 45668899999999999999999999999999984
Q ss_pred cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 369 LGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 369 ~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
|.....|..||.||.+.++.++|+.+|.+|+.. ......++..||.+|.+.++..+|..+|++.+..
T Consensus 429 -----PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~--------~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~ 495 (559)
T KOG1155|consen 429 -----PNDSRLWVALGECYEKLNRLEEAIKCYKRAILL--------GDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEV 495 (559)
T ss_pred -----CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc--------cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 888999999999999999999999999999998 3346678999999999999999999999999986
Q ss_pred h
Q psy597 449 A 449 (546)
Q Consensus 449 ~ 449 (546)
.
T Consensus 496 ~ 496 (559)
T KOG1155|consen 496 S 496 (559)
T ss_pred H
Confidence 4
No 40
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.61 E-value=2.8e-13 Score=148.67 Aligned_cols=308 Identities=13% Similarity=0.069 Sum_probs=185.3
Q ss_pred ChhhHHHhhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHH
Q psy597 197 PPSQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQA 276 (546)
Q Consensus 197 ~~~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~ 276 (546)
...++.......+..|....++..+|.++...|++++|+.+|+++++..+... .+.......+........+....
T Consensus 31 ~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~----~a~~~la~~l~~~g~~~eA~~~l 106 (765)
T PRK10049 31 DAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQND----DYQRGLILTLADAGQYDEALVKA 106 (765)
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCCCHHHHHHHH
Confidence 34444444444445677788899999999999999999999999998754432 11111111222222222222222
Q ss_pred HHHHHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Q psy597 277 KVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEP 356 (546)
Q Consensus 277 ~~~~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~ 356 (546)
..+. ...|..+. +..+|.++...|++++|+..+++++... |....++..+|.++...|..++|+.
T Consensus 107 ~~~l------~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~--------P~~~~~~~~la~~l~~~~~~e~Al~ 171 (765)
T PRK10049 107 KQLV------SGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA--------PQTQQYPTEYVQALRNNRLSAPALG 171 (765)
T ss_pred HHHH------HhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCChHHHHH
Confidence 2221 13455566 8899999999999999999999999883 4446677778888888888887776
Q ss_pred HHHH---------------------------------------HHHHHHHhc---CCC---ChHHHHHHHH-HHHHHHHc
Q psy597 357 LCKR---------------------------------------ALEIREKVL---GKE---HPDVAKQLNN-LALLCQNQ 390 (546)
Q Consensus 357 ~~~~---------------------------------------al~~~~~~~---~~~---~~~~~~~~~~-la~~~~~~ 390 (546)
.+++ |+...+... ..+ .+....+... ++. +...
T Consensus 172 ~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~-Ll~~ 250 (765)
T PRK10049 172 AIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGA-LLAR 250 (765)
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHH-HHHh
Confidence 5552 222222221 111 1222333333 443 4577
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhh
Q psy597 391 SKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQK 470 (546)
Q Consensus 391 g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 470 (546)
|++++|+..|+++++. ++..|..+..+ +|.+|..+|++++|+.+|++++...+............++..+...
T Consensus 251 g~~~eA~~~~~~ll~~-----~~~~P~~a~~~--la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~ 323 (765)
T PRK10049 251 DRYKDVISEYQRLKAE-----GQIIPPWAQRW--VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLES 323 (765)
T ss_pred hhHHHHHHHHHHhhcc-----CCCCCHHHHHH--HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhc
Confidence 9999999999998875 12235554433 6899999999999999999988753322100111223334456778
Q ss_pred chhhHHHHHHHHHHHHHHHH---c--CCCCH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q psy597 471 NKAKNREKYYQRALEIYELK---L--GPDDS--NVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 531 (546)
Q Consensus 471 ~~~~~A~~~~~~Al~~~~~~---~--~~~~~--~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~ 531 (546)
+++++|...+.++....... . ....| ....++..+|.++...|++++|+..+++++...|.
T Consensus 324 g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~ 391 (765)
T PRK10049 324 ENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG 391 (765)
T ss_pred ccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 88888888877776541000 0 00001 12234445555555555555555555555554443
No 41
>KOG0547|consensus
Probab=99.61 E-value=2.6e-13 Score=130.82 Aligned_cols=290 Identities=15% Similarity=0.113 Sum_probs=168.6
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChh
Q psy597 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPD 291 (546)
Q Consensus 212 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (546)
...+..+-..|+-+++.|+|++||.+|.+|+++++...--+.. +..+...+..+.. .......+ ..-.|+
T Consensus 112 ~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsN-raAcY~~lgd~~~---Vied~TkA------LEl~P~ 181 (606)
T KOG0547|consen 112 LKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSN-RAACYESLGDWEK---VIEDCTKA------LELNPD 181 (606)
T ss_pred HHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhh-HHHHHHHHhhHHH---HHHHHHHH------hhcCcH
Confidence 4567788999999999999999999999999987764211111 1111111111111 11111111 335688
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHH------------------HHHH-----HHHHhcCC-CCHH-----HHHHHH---
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLN------------------DALT-----IREKTLGE-NHAA-----VAATLN--- 339 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~------------------~al~-----~~~~~~g~-~~~~-----~~~~~~--- 339 (546)
...+++..+.++-..|++++|+.-.. +.+. .....+++ ..|. ...+|+
T Consensus 182 Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF 261 (606)
T KOG0547|consen 182 YVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSF 261 (606)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhc
Confidence 88889999999999999888874322 1111 11111221 1111 111111
Q ss_pred -------------------HHHHHHHHcC---CHHHHHHHHHHHHHHHHHhcCCC-------------------------
Q psy597 340 -------------------NLAVLYGKRG---KYKEAEPLCKRALEIREKVLGKE------------------------- 372 (546)
Q Consensus 340 -------------------~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~------------------------- 372 (546)
.-+.-+...+ .|.+|...+.+...........+
T Consensus 262 ~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~ 341 (606)
T KOG0547|consen 262 HADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGD 341 (606)
T ss_pred cccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCC
Confidence 0111111122 46666666665544332221111
Q ss_pred --------------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHH
Q psy597 373 --------------HPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEA 438 (546)
Q Consensus 373 --------------~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA 438 (546)
+|.....|..+|.+|....+.++....|.+|.++ +|.++.+|+..|.+++-++++++|
T Consensus 342 ~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l--------dp~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 342 SLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDL--------DPENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred chhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhc--------CCCCCchhHhHHHHHHHHHHHHHH
Confidence 1222223455555555555555555555555555 666677777777777777777777
Q ss_pred HHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHH
Q psy597 439 EILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEA 518 (546)
Q Consensus 439 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A 518 (546)
+.-|++++.+.|++. .+....+....+.+++.++...|+.+..- -|..++++...|.++..+++|++|
T Consensus 414 ~aDF~Kai~L~pe~~----~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--------FP~~~Evy~~fAeiLtDqqqFd~A 481 (606)
T KOG0547|consen 414 IADFQKAISLDPENA----YAYIQLCCALYRQHKIAESMKTFEEAKKK--------FPNCPEVYNLFAEILTDQQQFDKA 481 (606)
T ss_pred HHHHHHHhhcChhhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCCCchHHHHHHHHHhhHHhHHHH
Confidence 777777777765543 23344455566666777777777777765 466677777888888888888888
Q ss_pred HHHHHHHHHHhhh
Q psy597 519 EILYKQVLTRAHE 531 (546)
Q Consensus 519 ~~~~~~al~~~~~ 531 (546)
.+.|+.|+.+-|.
T Consensus 482 ~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 482 VKQYDKAIELEPR 494 (606)
T ss_pred HHHHHHHHhhccc
Confidence 8888888887765
No 42
>KOG2003|consensus
Probab=99.61 E-value=1.6e-13 Score=130.73 Aligned_cols=272 Identities=21% Similarity=0.172 Sum_probs=206.1
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhh---hhhHHHHHHHHHHHHhccCCCC
Q psy597 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSR---KESYDIVKQAKVAQILGSGGHD 288 (546)
Q Consensus 212 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~---~~~~~~~~~~~~~~~l~~~~~~ 288 (546)
|-....-.+.+..|.++|+++.|++.++ .+.+.......|.....+++... .+..++...+..+ ...
T Consensus 416 ~la~dlei~ka~~~lk~~d~~~aieilk----v~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~a------ln~ 485 (840)
T KOG2003|consen 416 ELAIDLEINKAGELLKNGDIEGAIEILK----VFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIA------LNI 485 (840)
T ss_pred hhhhhhhhhHHHHHHhccCHHHHHHHHH----HHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHH------hcc
Confidence 3444555677788999999999998763 34444444444444333333322 2222222222222 223
Q ss_pred ChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy597 289 HPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 368 (546)
Q Consensus 289 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 368 (546)
+...+.++.+.|.+-+..|++++|.+.|.+++.- +.....+++++|..+..+|+.++|+.+|-+.-.+.
T Consensus 486 dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n--------dasc~ealfniglt~e~~~~ldeald~f~klh~il--- 554 (840)
T KOG2003|consen 486 DRYNAAALTNKGNIAFANGDLDKAAEFYKEALNN--------DASCTEALFNIGLTAEALGNLDEALDCFLKLHAIL--- 554 (840)
T ss_pred cccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC--------chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH---
Confidence 4556778888999999999999999999999854 56668999999999999999999999999988886
Q ss_pred cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 369 LGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 369 ~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
...+.++..++.+|..+.+..+|++++-++..+ .|..+.++..||.+|-..|+...|..++-.....
T Consensus 555 -----~nn~evl~qianiye~led~aqaie~~~q~~sl--------ip~dp~ilskl~dlydqegdksqafq~~ydsyry 621 (840)
T KOG2003|consen 555 -----LNNAEVLVQIANIYELLEDPAQAIELLMQANSL--------IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY 621 (840)
T ss_pred -----HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc--------CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc
Confidence 567889999999999999999999999999888 6777888999999999999999999988777665
Q ss_pred hhhcccCcccCCChhhHH---HHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy597 449 AHEREFGACDGDNKPIWQ---DRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQV 525 (546)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~a 525 (546)
+|.+ ....-|. |....-.+.++.+|++|.-+ .|....-...++.|+.+.|+|.+|...|+..
T Consensus 622 fp~n-------ie~iewl~ayyidtqf~ekai~y~ekaali--------qp~~~kwqlmiasc~rrsgnyqka~d~yk~~ 686 (840)
T KOG2003|consen 622 FPCN-------IETIEWLAAYYIDTQFSEKAINYFEKAALI--------QPNQSKWQLMIASCFRRSGNYQKAFDLYKDI 686 (840)
T ss_pred cCcc-------hHHHHHHHHHHHhhHHHHHHHHHHHHHHhc--------CccHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 4422 1122233 44555567778888887655 6777777788999999999999999999999
Q ss_pred HHHhhhh
Q psy597 526 LTRAHER 532 (546)
Q Consensus 526 l~~~~~~ 532 (546)
-+.+|++
T Consensus 687 hrkfped 693 (840)
T KOG2003|consen 687 HRKFPED 693 (840)
T ss_pred HHhCccc
Confidence 8888765
No 43
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.60 E-value=1.5e-13 Score=129.50 Aligned_cols=182 Identities=15% Similarity=0.095 Sum_probs=152.5
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCCh
Q psy597 211 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHP 290 (546)
Q Consensus 211 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 290 (546)
.+..+..++.+|..++..|+|++|+..|++++.. .++++
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~-----------------------------------------~p~~~ 67 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESR-----------------------------------------YPFSP 67 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------------------------------------CCCch
Confidence 3556789999999999999999999999999885 33556
Q ss_pred hHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHH
Q psy597 291 DVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKR--------GKYKEAEPLCKRAL 362 (546)
Q Consensus 291 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al 362 (546)
....+++.+|.++...|++++|+..|++++... ++++....+++.+|.++... |++++|+..|++++
T Consensus 68 ~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 142 (235)
T TIGR03302 68 YAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-----PNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELI 142 (235)
T ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHH
Confidence 667789999999999999999999999999886 44566667899999999886 88999999999999
Q ss_pred HHHHHhcCCCChHHHHH--------------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q psy597 363 EIREKVLGKEHPDVAKQ--------------LNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASC 428 (546)
Q Consensus 363 ~~~~~~~~~~~~~~~~~--------------~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~ 428 (546)
... ++++....+ ...+|.++...|++.+|+..|+++++.+ ++.|....++..+|.+
T Consensus 143 ~~~-----p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~a~~~l~~~ 212 (235)
T TIGR03302 143 RRY-----PNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENY-----PDTPATEEALARLVEA 212 (235)
T ss_pred HHC-----CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHC-----CCCcchHHHHHHHHHH
Confidence 875 333322222 2467899999999999999999999873 4467788999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHh
Q psy597 429 YLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 429 y~~~g~~~eA~~~~~~al~~ 448 (546)
|...|++++|..+++.....
T Consensus 213 ~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 213 YLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHcCCHHHHHHHHHHHHhh
Confidence 99999999999988877654
No 44
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.59 E-value=1.8e-13 Score=132.98 Aligned_cols=225 Identities=15% Similarity=0.098 Sum_probs=161.7
Q ss_pred CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCC
Q psy597 210 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDH 289 (546)
Q Consensus 210 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 289 (546)
+.+..+..++.+|.+|...|++++|+..|+++++. .
T Consensus 59 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--------------------------------------------~ 94 (296)
T PRK11189 59 TDEERAQLHYERGVLYDSLGLRALARNDFSQALAL--------------------------------------------R 94 (296)
T ss_pred CcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------------------------------------------C
Confidence 33456899999999999999999999999999983 5
Q ss_pred hhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q psy597 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 369 (546)
Q Consensus 290 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 369 (546)
|..+.+++.+|.++...|++++|+..|++++++ .|....++.++|.++...|++++|+..|++++...
T Consensus 95 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~---- 162 (296)
T PRK11189 95 PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD---- 162 (296)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----
Confidence 667889999999999999999999999999988 45557789999999999999999999999999884
Q ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--
Q psy597 370 GKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT-- 447 (546)
Q Consensus 370 ~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~-- 447 (546)
++++. ...+ ..+....+++++|+..|.+++.. . ++.. + ..+.++...|++..+ ..+..+..
T Consensus 163 -P~~~~-~~~~---~~l~~~~~~~~~A~~~l~~~~~~------~-~~~~---~-~~~~~~~~lg~~~~~-~~~~~~~~~~ 225 (296)
T PRK11189 163 -PNDPY-RALW---LYLAESKLDPKQAKENLKQRYEK------L-DKEQ---W-GWNIVEFYLGKISEE-TLMERLKAGA 225 (296)
T ss_pred -CCCHH-HHHH---HHHHHccCCHHHHHHHHHHHHhh------C-Cccc---c-HHHHHHHHccCCCHH-HHHHHHHhcC
Confidence 33331 1111 22345678999999999887643 1 2211 1 134555567776544 23333332
Q ss_pred -hhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCC
Q psy597 448 -RAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGK 514 (546)
Q Consensus 448 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~ 514 (546)
..++........+...+..+...|++++|..+|++|+.. +.++.....+.+..+....+.
T Consensus 226 ~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~-------~~~~~~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 226 TDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN-------NVYNFVEHRYALLELALLGQD 286 (296)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CCchHHHHHHHHHHHHHHHhh
Confidence 111111112234666777888999999999999999976 124566666655555554433
No 45
>KOG1125|consensus
Probab=99.59 E-value=3e-14 Score=140.27 Aligned_cols=237 Identities=16% Similarity=0.189 Sum_probs=168.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHHHH
Q psy597 219 HNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNI 298 (546)
Q Consensus 219 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 298 (546)
+..|..+++.|+..+|+-.|+.|+. .+|..+.+|..
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVk--------------------------------------------qdP~haeAW~~ 324 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVK--------------------------------------------QDPQHAEAWQK 324 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHh--------------------------------------------hChHHHHHHHH
Confidence 5578899999999999999999988 67999999999
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Q psy597 299 LALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAK 378 (546)
Q Consensus 299 la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 378 (546)
||.+....++-..|+..+++++++ +|....++..||..|...|.-.+|..++.+-+... |....
T Consensus 325 LG~~qaENE~E~~ai~AL~rcl~L--------dP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~--------p~y~~ 388 (579)
T KOG1125|consen 325 LGITQAENENEQNAISALRRCLEL--------DPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNK--------PKYVH 388 (579)
T ss_pred hhhHhhhccchHHHHHHHHHHHhc--------CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC--------ccchh
Confidence 999999999999999999999998 67778999999999999999999999999987653 11110
Q ss_pred HHHH----H---HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 379 QLNN----L---ALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 379 ~~~~----l---a~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
.-.. . ..-......+..-.++|-.+... . + ....+++...||.+|...|+|++|+.+|+.||..-|.
T Consensus 389 l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~---~--~-~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pn 462 (579)
T KOG1125|consen 389 LVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQ---L--P-TKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPN 462 (579)
T ss_pred ccccCccccccCCcCCCCHHHHHHHHHHHHHHHHh---C--C-CCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCc
Confidence 0000 0 00000001122223333333332 1 1 1134455666777777777777777777777765443
Q ss_pred cccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q psy597 452 REFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 531 (546)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~ 531 (546)
+. ..++.+|-.+....+..+|+..|.+|+++ .|...++.++||..|..+|.|++|.++|-.|+.+.+.
T Consensus 463 d~----~lWNRLGAtLAN~~~s~EAIsAY~rALqL--------qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 463 DY----LLWNRLGATLANGNRSEEAISAYNRALQL--------QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred hH----HHHHHhhHHhcCCcccHHHHHHHHHHHhc--------CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 32 23444444455556666777777777766 7888889999999999999999999999999988766
Q ss_pred hc
Q psy597 532 RE 533 (546)
Q Consensus 532 ~~ 533 (546)
..
T Consensus 531 s~ 532 (579)
T KOG1125|consen 531 SR 532 (579)
T ss_pred cc
Confidence 43
No 46
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.58 E-value=2.1e-13 Score=128.47 Aligned_cols=199 Identities=19% Similarity=0.139 Sum_probs=144.8
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
..+..+..++.+|..+...|++++|+..|++++... ++++....+++.+|.++...|++++|+..|+++++..
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-- 100 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-----PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-- 100 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--
Confidence 456678899999999999999999999999998875 4566677889999999999999999999999999886
Q ss_pred hcCCCChHHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHH
Q psy597 368 VLGKEHPDVAKQLNNLALLCQNQ--------SKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAE 439 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~~~--------g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~ 439 (546)
++++....+++.+|.++... |++++|+..|++++... |+++....++..++..+...+..
T Consensus 101 ---p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~~~~~~~~~~~~---- 168 (235)
T TIGR03302 101 ---PNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-----PNSEYAPDAKKRMDYLRNRLAGK---- 168 (235)
T ss_pred ---cCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-----CCChhHHHHHHHHHHHHHHHHHH----
Confidence 45566667899999999876 88999999999999872 22332333332222211100000
Q ss_pred HHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHH
Q psy597 440 ILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAE 519 (546)
Q Consensus 440 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~ 519 (546)
....+..+...|++..|...|.+++..+ ++.|....++..+|.+|...|++++|.
T Consensus 169 --------------------~~~~a~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~a~~~l~~~~~~lg~~~~A~ 223 (235)
T TIGR03302 169 --------------------ELYVARFYLKRGAYVAAINRFETVVENY-----PDTPATEEALARLVEAYLKLGLKDLAQ 223 (235)
T ss_pred --------------------HHHHHHHHHHcCChHHHHHHHHHHHHHC-----CCCcchHHHHHHHHHHHHHcCCHHHHH
Confidence 0012223444455555555555554442 335667889999999999999999999
Q ss_pred HHHHHHHHHhh
Q psy597 520 ILYKQVLTRAH 530 (546)
Q Consensus 520 ~~~~~al~~~~ 530 (546)
.+++.....+|
T Consensus 224 ~~~~~l~~~~~ 234 (235)
T TIGR03302 224 DAAAVLGANYP 234 (235)
T ss_pred HHHHHHHhhCC
Confidence 99988776553
No 47
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.54 E-value=4.3e-12 Score=116.61 Aligned_cols=262 Identities=18% Similarity=0.186 Sum_probs=203.6
Q ss_pred ChhhHHHhhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHH
Q psy597 197 PPSQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQA 276 (546)
Q Consensus 197 ~~~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~ 276 (546)
|.-++..+......+|...++...+|..|.+.|..+.|+..-+..++
T Consensus 51 ~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~--------------------------------- 97 (389)
T COG2956 51 PDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE--------------------------------- 97 (389)
T ss_pred cchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc---------------------------------
Confidence 44455566666778899999999999999999999999998876665
Q ss_pred HHHHHhccCCCC--ChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHH
Q psy597 277 KVAQILGSGGHD--HPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEA 354 (546)
Q Consensus 277 ~~~~~l~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A 354 (546)
.++ ......++..||.=|+..|=++.|...|....+. ......++..|-.+|....+|++|
T Consensus 98 ---------spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de--------~efa~~AlqqLl~IYQ~treW~KA 160 (389)
T COG2956 98 ---------SPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDE--------GEFAEGALQQLLNIYQATREWEKA 160 (389)
T ss_pred ---------CCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcc--------hhhhHHHHHHHHHHHHHhhHHHHH
Confidence 222 2345677889999999999999999999988764 233466888999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCC
Q psy597 355 EPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGK 434 (546)
Q Consensus 355 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~ 434 (546)
++..++...+..+ +.....+..|..||..+....+.+.|+..+.+|++. +|....+-..+|.++...|+
T Consensus 161 Id~A~~L~k~~~q---~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa--------~~~cvRAsi~lG~v~~~~g~ 229 (389)
T COG2956 161 IDVAERLVKLGGQ---TYRVEIAQFYCELAQQALASSDVDRARELLKKALQA--------DKKCVRASIILGRVELAKGD 229 (389)
T ss_pred HHHHHHHHHcCCc---cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh--------CccceehhhhhhHHHHhccc
Confidence 9999988877422 223567888999999999999999999999999998 88999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCC
Q psy597 435 YKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGK 514 (546)
Q Consensus 435 ~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~ 514 (546)
|+.|++.++.+++..++-- ......+..+|...|+..+....+.++.+.+ + ...+...++.+-....-
T Consensus 230 y~~AV~~~e~v~eQn~~yl---~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--------~-g~~~~l~l~~lie~~~G 297 (389)
T COG2956 230 YQKAVEALERVLEQNPEYL---SEVLEMLYECYAQLGKPAEGLNFLRRAMETN--------T-GADAELMLADLIELQEG 297 (389)
T ss_pred hHHHHHHHHHHHHhChHHH---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--------C-CccHHHHHHHHHHHhhC
Confidence 9999999999988644311 0122234455888888888888888887652 1 12344556666666666
Q ss_pred HHHHHHHHHHHHHHhhh
Q psy597 515 YKEAEILYKQVLTRAHE 531 (546)
Q Consensus 515 ~~~A~~~~~~al~~~~~ 531 (546)
.+.|..++.+-+...|.
T Consensus 298 ~~~Aq~~l~~Ql~r~Pt 314 (389)
T COG2956 298 IDAAQAYLTRQLRRKPT 314 (389)
T ss_pred hHHHHHHHHHHHhhCCc
Confidence 77888888777776554
No 48
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.53 E-value=1.4e-11 Score=139.34 Aligned_cols=276 Identities=14% Similarity=0.054 Sum_probs=214.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHH
Q psy597 214 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVA 293 (546)
Q Consensus 214 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 293 (546)
.......+|.++...|++++|..++++++...+ ..+.....
T Consensus 451 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~---------------------------------------~~~~~~~~ 491 (903)
T PRK04841 451 QAEFNALRAQVAINDGDPEEAERLAELALAELP---------------------------------------LTWYYSRI 491 (903)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC---------------------------------------CccHHHHH
Confidence 445556688889999999999999999987421 11222345
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q psy597 294 TMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEH 373 (546)
Q Consensus 294 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 373 (546)
.++..+|.++...|++++|...+.+++...... .+......++.++|.++...|++++|..++.+++.......+...
T Consensus 492 ~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~--g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~ 569 (903)
T PRK04841 492 VATSVLGEVHHCKGELARALAMMQQTEQMARQH--DVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQL 569 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh--cchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccc
Confidence 567889999999999999999999999988765 344445668899999999999999999999999999877644444
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcc
Q psy597 374 PDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHERE 453 (546)
Q Consensus 374 ~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~ 453 (546)
+.....+..+|.++...|++++|...+.+++.+..... ......++..+|.++...|++++|...+.++..+.....
T Consensus 570 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~ 646 (903)
T PRK04841 570 PMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQ---PQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGR 646 (903)
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccC---chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccc
Confidence 54556677899999999999999999999999876431 234566788899999999999999999999877543221
Q ss_pred cCc-----------------------------------ccC------CChhhHHHHhhchhhHHHHHHHHHHHHHHHHcC
Q psy597 454 FGA-----------------------------------CDG------DNKPIWQDRQKNKAKNREKYYQRALEIYELKLG 492 (546)
Q Consensus 454 ~~~-----------------------------------~~~------~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~ 492 (546)
... ... ....+..+...|++.+|...+.+++.......
T Consensus 647 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g- 725 (903)
T PRK04841 647 YHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLR- 725 (903)
T ss_pred ccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC-
Confidence 000 000 01223346677899999999999998765442
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhccC
Q psy597 493 PDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFG 535 (546)
Q Consensus 493 ~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 535 (546)
.......++..+|.++...|++++|..++.+|++++...++.
T Consensus 726 -~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g~~ 767 (903)
T PRK04841 726 -LMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTGFI 767 (903)
T ss_pred -chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccchh
Confidence 245677888999999999999999999999999999776654
No 49
>KOG0624|consensus
Probab=99.53 E-value=4.8e-12 Score=116.93 Aligned_cols=298 Identities=16% Similarity=0.119 Sum_probs=221.2
Q ss_pred hhHHHhhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-------------CchhHHHhhHHHHHhh
Q psy597 199 SQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTS-------------GKYEAAETLEDCALRS 265 (546)
Q Consensus 199 ~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-------------~~~~~a~~~~~~~l~~ 265 (546)
.++.+.-.+...+|.+..+++..|.+|...|+-.-|+.-+.+++++-+... |.++.|..-+...+..
T Consensus 56 DALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~ 135 (504)
T KOG0624|consen 56 DALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQH 135 (504)
T ss_pred HHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhc
Confidence 355555556667788888888888888888888888888888877643322 4555555555555543
Q ss_pred hhhhHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy597 266 RKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLY 345 (546)
Q Consensus 266 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~ 345 (546)
.+............ ......+.+......+...|++..|+++....+++ .|+.+..+...+.+|
T Consensus 136 ~~s~~~~~eaqskl--------~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi--------~~Wda~l~~~Rakc~ 199 (504)
T KOG0624|consen 136 EPSNGLVLEAQSKL--------ALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI--------QPWDASLRQARAKCY 199 (504)
T ss_pred CCCcchhHHHHHHH--------HhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc--------CcchhHHHHHHHHHH
Confidence 33211111111000 01122334455556677789999999999999988 578888999999999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q psy597 346 GKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNL 425 (546)
Q Consensus 346 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~L 425 (546)
...|+...|+.-++.+-.+. .+....++.++.+++..|+.+.++...++++++ .|++......|-.+
T Consensus 200 i~~~e~k~AI~Dlk~askLs--------~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl-----dpdHK~Cf~~YKkl 266 (504)
T KOG0624|consen 200 IAEGEPKKAIHDLKQASKLS--------QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL-----DPDHKLCFPFYKKL 266 (504)
T ss_pred HhcCcHHHHHHHHHHHHhcc--------ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc-----CcchhhHHHHHHHH
Confidence 99999999999999988874 566788999999999999999999999999998 12222222222222
Q ss_pred ---------HHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCH
Q psy597 426 ---------ASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDS 496 (546)
Q Consensus 426 ---------a~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~ 496 (546)
+.-....++|.++++..++.++..|+.....+.....+..++...+++.+|+....+++.+ .|
T Consensus 267 kKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--------d~ 338 (504)
T KOG0624|consen 267 KKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--------DP 338 (504)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--------Cc
Confidence 3344567889999999999998877655556666666777788999999999999999987 88
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhc
Q psy597 497 NVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHERE 533 (546)
Q Consensus 497 ~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~~~ 533 (546)
..+.++...+.+|.....|+.|+.-|++|.+..+.+.
T Consensus 339 ~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~ 375 (504)
T KOG0624|consen 339 DDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNT 375 (504)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccH
Confidence 9999999999999999999999999999999876553
No 50
>KOG1174|consensus
Probab=99.51 E-value=4.9e-12 Score=119.65 Aligned_cols=286 Identities=13% Similarity=0.045 Sum_probs=206.8
Q ss_pred HHHhhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHH
Q psy597 201 FAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQ 280 (546)
Q Consensus 201 ~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~ 280 (546)
.....+.....|.+...+..+|.+++..|++++|+..|+++.-+-+... .+...+...+..-....+.........
T Consensus 218 t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i----~~MD~Ya~LL~~eg~~e~~~~L~~~Lf 293 (564)
T KOG1174|consen 218 TFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNV----EAMDLYAVLLGQEGGCEQDSALMDYLF 293 (564)
T ss_pred HHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhh----hhHHHHHHHHHhccCHhhHHHHHHHHH
Confidence 3344455566789999999999999999999999999999876533322 222222222222222211111111110
Q ss_pred HhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy597 281 ILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKR 360 (546)
Q Consensus 281 ~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 360 (546)
......+.-|+.-+...+...++..|+.+-+++++. .+....++...|.++...|+.++|+-.|+.
T Consensus 294 ------~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~--------~~r~~~alilKG~lL~~~~R~~~A~IaFR~ 359 (564)
T KOG1174|consen 294 ------AKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDS--------EPRNHEALILKGRLLIALERHTQAVIAFRT 359 (564)
T ss_pred ------hhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc--------CcccchHHHhccHHHHhccchHHHHHHHHH
Confidence 011233445667778888889999999999999877 445577888999999999999999999999
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH-HHHHH-cCCHHHH
Q psy597 361 ALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLA-SCYLK-QGKYKEA 438 (546)
Q Consensus 361 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La-~~y~~-~g~~~eA 438 (546)
|..+. |....+|..|-.+|...|++.+|....+.++.. -+..+.++..+| .++.. ----++|
T Consensus 360 Aq~La--------p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~--------~~~sA~~LtL~g~~V~~~dp~~rEKA 423 (564)
T KOG1174|consen 360 AQMLA--------PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL--------FQNSARSLTLFGTLVLFPDPRMREKA 423 (564)
T ss_pred HHhcc--------hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--------hhcchhhhhhhcceeeccCchhHHHH
Confidence 99885 888999999999999999999999999998887 566677777775 44433 2334789
Q ss_pred HHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHH
Q psy597 439 EILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEA 518 (546)
Q Consensus 439 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A 518 (546)
..++++++++.|.- .......+..+...|....++..+++++..+ + ....+..||.++...+.+.+|
T Consensus 424 Kkf~ek~L~~~P~Y----~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~--------~-D~~LH~~Lgd~~~A~Ne~Q~a 490 (564)
T KOG1174|consen 424 KKFAEKSLKINPIY----TPAVNLIAELCQVEGPTKDIIKLLEKHLIIF--------P-DVNLHNHLGDIMRAQNEPQKA 490 (564)
T ss_pred HHHHHhhhccCCcc----HHHHHHHHHHHHhhCccchHHHHHHHHHhhc--------c-ccHHHHHHHHHHHHhhhHHHH
Confidence 99999998874321 1122233444677789999999999998763 2 245778999999999999999
Q ss_pred HHHHHHHHHHhhhhc
Q psy597 519 EILYKQVLTRAHERE 533 (546)
Q Consensus 519 ~~~~~~al~~~~~~~ 533 (546)
..+|..|+++.|.+.
T Consensus 491 m~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 491 MEYYYKALRQDPKSK 505 (564)
T ss_pred HHHHHHHHhcCccch
Confidence 999999999988763
No 51
>KOG1125|consensus
Probab=99.50 E-value=3.7e-13 Score=132.70 Aligned_cols=197 Identities=21% Similarity=0.248 Sum_probs=154.8
Q ss_pred CCChhhHHHhhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHH
Q psy597 195 PTPPSQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVK 274 (546)
Q Consensus 195 ~~~~~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~ 274 (546)
+..+.+...+..+...+|.++++|..||.+....++-..|+..++++++
T Consensus 299 G~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~------------------------------- 347 (579)
T KOG1125|consen 299 GDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLE------------------------------- 347 (579)
T ss_pred CCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHh-------------------------------
Confidence 3466777888888999999999999999999999999999999999998
Q ss_pred HHHHHHHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh-----------cCC----C---------
Q psy597 275 QAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKT-----------LGE----N--------- 330 (546)
Q Consensus 275 ~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-----------~g~----~--------- 330 (546)
-+|....++..||..|...|.-.+|..++.+-+....+. .+. .
T Consensus 348 -------------LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~ 414 (579)
T KOG1125|consen 348 -------------LDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQ 414 (579)
T ss_pred -------------cCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHH
Confidence 467778888899999998888888888888776543110 000 0
Q ss_pred ---------CH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHH
Q psy597 331 ---------HA--AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERY 399 (546)
Q Consensus 331 ---------~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~ 399 (546)
.| ..+++...||.+|...|+|++|+++|+.||.. .|.....|+.||-.+..-.+.++|+..
T Consensus 415 ~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v--------~Pnd~~lWNRLGAtLAN~~~s~EAIsA 486 (579)
T KOG1125|consen 415 ELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV--------KPNDYLLWNRLGATLANGNRSEEAISA 486 (579)
T ss_pred HHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhc--------CCchHHHHHHhhHHhcCCcccHHHHHH
Confidence 01 22456677788888888888888888888876 377788888888888888888888888
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 400 YQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 400 ~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
|.+|+++ .|...++++|||.+|..+|.|++|.++|-.+|.+.+.
T Consensus 487 Y~rALqL--------qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 487 YNRALQL--------QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred HHHHHhc--------CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 8888887 7778888888888888888888888888888876544
No 52
>KOG1129|consensus
Probab=99.48 E-value=1.5e-12 Score=119.60 Aligned_cols=190 Identities=18% Similarity=0.159 Sum_probs=159.6
Q ss_pred ChhhHHHhhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHH
Q psy597 197 PPSQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQA 276 (546)
Q Consensus 197 ~~~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~ 276 (546)
|..++....+.....|.++..+..++.++...+++++|..+|+.+++
T Consensus 272 P~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk--------------------------------- 318 (478)
T KOG1129|consen 272 PERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLK--------------------------------- 318 (478)
T ss_pred HHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHh---------------------------------
Confidence 34455666666777888899999999999999999999999999887
Q ss_pred HHHHHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Q psy597 277 KVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEP 356 (546)
Q Consensus 277 ~~~~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~ 356 (546)
.++....+.-.+|.-|+..++.+-|+.+|++.+.+- ...+..+.++|.|++..++++-++.
T Consensus 319 -----------~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG--------~~speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 319 -----------LHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMG--------AQSPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred -----------cCCccceeeeeeeeccccCCChHHHHHHHHHHHHhc--------CCChHHHhhHHHHHHhhcchhhhHH
Confidence 356666667777888888999999999999999883 2336678999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHH
Q psy597 357 LCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYK 436 (546)
Q Consensus 357 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~ 436 (546)
.|++|+... .++...+.+|+|+|.+....|++.-|.++|+-++.. +++...+++|||.+-.+.|+.+
T Consensus 380 sf~RAlsta-----t~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~--------d~~h~ealnNLavL~~r~G~i~ 446 (478)
T KOG1129|consen 380 SFQRALSTA-----TQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS--------DAQHGEALNNLAVLAARSGDIL 446 (478)
T ss_pred HHHHHHhhc-----cCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc--------CcchHHHHHhHHHHHhhcCchH
Confidence 999999886 334667889999999999999999999999988876 8888999999999999999999
Q ss_pred HHHHHHHHHHHhhhh
Q psy597 437 EAEILYKQVLTRAHE 451 (546)
Q Consensus 437 eA~~~~~~al~~~~~ 451 (546)
+|..++..+-...|.
T Consensus 447 ~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 447 GARSLLNAAKSVMPD 461 (478)
T ss_pred HHHHHHHHhhhhCcc
Confidence 999999988877664
No 53
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.47 E-value=5.2e-12 Score=126.91 Aligned_cols=213 Identities=16% Similarity=0.083 Sum_probs=163.4
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCCh
Q psy597 211 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHP 290 (546)
Q Consensus 211 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 290 (546)
+|+.+.++..+|..+...|+++.+...+.++....+ ...
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------~~~ 40 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALA-----------------------------------------ARA 40 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhc-----------------------------------------cCC
Confidence 588889999999999999999999888888776533 223
Q ss_pred hHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q psy597 291 DVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 370 (546)
Q Consensus 291 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 370 (546)
.........|.++...|++++|...+++++... |....++.. +..+...|++..+.....+++.. ..
T Consensus 41 ~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--------P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~----~~ 107 (355)
T cd05804 41 TERERAHVEALSAWIAGDLPKALALLEQLLDDY--------PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL----WA 107 (355)
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------CCcHHHHHH-hHHHHHhcccccCchhHHHHHhc----cC
Confidence 445557778999999999999999999999873 222344444 66666666666666666665543 23
Q ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q psy597 371 KEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAH 450 (546)
Q Consensus 371 ~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~ 450 (546)
+.+|.....+..+|.++...|++++|+..+++++++ .|....++..+|.+|...|++++|+.++++++...+
T Consensus 108 ~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--------~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~ 179 (355)
T cd05804 108 PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL--------NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWD 179 (355)
T ss_pred cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC
Confidence 557888888999999999999999999999999998 677788899999999999999999999999998765
Q ss_pred hcccCcccCCChhhHHHHhhchhhHHHHHHHHHHH
Q psy597 451 EREFGACDGDNKPIWQDRQKNKAKNREKYYQRALE 485 (546)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~ 485 (546)
.............+..+...|++++|...|++++.
T Consensus 180 ~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 180 CSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred CCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 42211111222455557788888888888888753
No 54
>KOG1941|consensus
Probab=99.47 E-value=1.2e-10 Score=108.48 Aligned_cols=315 Identities=15% Similarity=0.075 Sum_probs=221.5
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhH--HHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCC
Q psy597 211 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEA--AETLEDCALRSRKESYDIVKQAKVAQILGSGGHD 288 (546)
Q Consensus 211 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 288 (546)
...+...+-.+..+....|.|++++.+.-..+..+....+..-. |..-...+.....+........+.-..+....+
T Consensus 39 ~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~- 117 (518)
T KOG1941|consen 39 LMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRA- 117 (518)
T ss_pred HHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCc-
Confidence 34566677777788888888888887766666655444322222 222222222333333333333332222221111
Q ss_pred ChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy597 289 HPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 368 (546)
Q Consensus 289 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 368 (546)
...-..+...+|.++...+.+++++++|++|+.+...+ .|......++..||.+|....++++|.-+..+|.++....
T Consensus 118 ~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~--~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~ 195 (518)
T KOG1941|consen 118 GQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNN--DDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSY 195 (518)
T ss_pred ccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhcc--CCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhc
Confidence 12334667779999999999999999999999998776 5555567889999999999999999999999999998765
Q ss_pred cCCC--ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy597 369 LGKE--HPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 446 (546)
Q Consensus 369 ~~~~--~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al 446 (546)
.-++ ......+++.++..+..+|....|.++.+++.++.-.. +|.+..+.+...+|.+|...|+.+.|..-|+++.
T Consensus 196 ~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~--Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 196 GLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQH--GDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred CcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHh--CChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 3222 23456788999999999999999999999999997766 7788999999999999999999999999999999
Q ss_pred Hhhhhcc--cCcccCCChhhHHHHhh-----chhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHH
Q psy597 447 TRAHERE--FGACDGDNKPIWQDRQK-----NKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAE 519 (546)
Q Consensus 447 ~~~~~~~--~~~~~~~~~~~~~~~~~-----~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~ 519 (546)
.....-+ .+.+......+...... +..-.|++.-.+.+++...+.. .......+..++.+|..+|.-++=.
T Consensus 274 ~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~--K~~vlK~hcrla~iYrs~gl~d~~~ 351 (518)
T KOG1941|consen 274 GTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGA--KLSVLKLHCRLASIYRSKGLQDELR 351 (518)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhccchhHHH
Confidence 8765422 22222222222222111 1223477777788877766633 4556778889999999999988888
Q ss_pred HHHHHHHHHhhhh
Q psy597 520 ILYKQVLTRAHER 532 (546)
Q Consensus 520 ~~~~~al~~~~~~ 532 (546)
..+.++-+...+-
T Consensus 352 ~h~~ra~~~~~e~ 364 (518)
T KOG1941|consen 352 AHVVRAHECVEET 364 (518)
T ss_pred HHHHHHHHHHHHH
Confidence 8887776655443
No 55
>KOG4162|consensus
Probab=99.45 E-value=3e-11 Score=122.99 Aligned_cols=264 Identities=19% Similarity=0.125 Sum_probs=202.7
Q ss_pred HhhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHh
Q psy597 203 QQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQIL 282 (546)
Q Consensus 203 ~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l 282 (546)
.+.....-+|.++.+.+.++..|..+++.+.|..+.++++++
T Consensus 466 ale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l-------------------------------------- 507 (799)
T KOG4162|consen 466 ALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALAL-------------------------------------- 507 (799)
T ss_pred HHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHh--------------------------------------
Confidence 344455556777799999999999999999999999999985
Q ss_pred ccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy597 283 GSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRAL 362 (546)
Q Consensus 283 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 362 (546)
+..+.+.+|..++.++...+++.+|+...+.+++-+...++ .......+-...++.++|+..+...+
T Consensus 508 -----~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~--------l~~~~~~i~~~~~~~e~~l~t~~~~L 574 (799)
T KOG4162|consen 508 -----NRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHV--------LMDGKIHIELTFNDREEALDTCIHKL 574 (799)
T ss_pred -----cCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhh--------hchhhhhhhhhcccHHHHHHHHHHHH
Confidence 34556778888999999999999999999888887644211 11112222223444444444444444
Q ss_pred HHHHHhc-----------------------------------------------------------CCCCh--HHHHHHH
Q psy597 363 EIREKVL-----------------------------------------------------------GKEHP--DVAKQLN 381 (546)
Q Consensus 363 ~~~~~~~-----------------------------------------------------------~~~~~--~~~~~~~ 381 (546)
...+..+ +++++ .....|.
T Consensus 575 ~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwl 654 (799)
T KOG4162|consen 575 ALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWL 654 (799)
T ss_pred HHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHH
Confidence 4433110 01111 1223456
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCC
Q psy597 382 NLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDN 461 (546)
Q Consensus 382 ~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~ 461 (546)
..|..+...++.++|..++.++-.+ .|..+..|+..|.++...|++.+|...|..++.+.|++. ....
T Consensus 655 laa~~~~~~~~~~~a~~CL~Ea~~~--------~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv----~s~~ 722 (799)
T KOG4162|consen 655 LAADLFLLSGNDDEARSCLLEASKI--------DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHV----PSMT 722 (799)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhc--------chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCc----HHHH
Confidence 7788888999999999999999998 889999999999999999999999999999999877653 3455
Q ss_pred hhhHHHHhhchhhHHHH--HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhccCCC
Q psy597 462 KPIWQDRQKNKAKNREK--YYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGAC 537 (546)
Q Consensus 462 ~~~~~~~~~~~~~~A~~--~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~ 537 (546)
..+.++...|+..-|.. .+..|+++ +|....+|+.+|.++..+|+.++|.++|..|+++.+.+|.-+.
T Consensus 723 Ala~~lle~G~~~la~~~~~L~dalr~--------dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV~pF 792 (799)
T KOG4162|consen 723 ALAELLLELGSPRLAEKRSLLSDALRL--------DPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPVLPF 792 (799)
T ss_pred HHHHHHHHhCCcchHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCcccc
Confidence 66777888898888877 89999988 8999999999999999999999999999999999888776654
No 56
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.45 E-value=1.3e-11 Score=119.05 Aligned_cols=155 Identities=26% Similarity=0.365 Sum_probs=129.6
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
+....+..+...|..|...|++++|...|.++.....+. ++....+..+...+.+|... ++++|+.+|+++++++..
T Consensus 30 ~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~--~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~ 106 (282)
T PF14938_consen 30 DYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKL--GDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYRE 106 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHh
Confidence 344567888899999999999999999999999999885 66677788888888888666 999999999999999977
Q ss_pred hcCCCChHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy597 368 VLGKEHPDVAKQLNNLALLCQNQ-SKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 446 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~~~-g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al 446 (546)
. ++....+.++..+|.+|... |++++|+.+|++|+++++.. +.......++..+|.++...|+|++|+..|+++.
T Consensus 107 ~--G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e--~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~ 182 (282)
T PF14938_consen 107 A--GRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQE--GSPHSAAECLLKAADLYARLGRYEEAIEIYEEVA 182 (282)
T ss_dssp C--T-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred c--CcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC--CChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 6 55566788999999999999 99999999999999999876 3345567888999999999999999999999988
Q ss_pred Hhh
Q psy597 447 TRA 449 (546)
Q Consensus 447 ~~~ 449 (546)
...
T Consensus 183 ~~~ 185 (282)
T PF14938_consen 183 KKC 185 (282)
T ss_dssp HTC
T ss_pred HHh
Confidence 754
No 57
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.45 E-value=1.9e-11 Score=124.73 Aligned_cols=283 Identities=10% Similarity=-0.017 Sum_probs=167.8
Q ss_pred CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCC
Q psy597 210 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDH 289 (546)
Q Consensus 210 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 289 (546)
..|.....+...|.++..+|+++.|..++.++.+..+...-. .............+...+....... ....
T Consensus 113 ~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~---~~~~~a~l~l~~~~~~~Al~~l~~l------~~~~ 183 (409)
T TIGR00540 113 HAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNIL---VEIARTRILLAQNELHAARHGVDKL------LEMA 183 (409)
T ss_pred cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchH---HHHHHHHHHHHCCCHHHHHHHHHHH------HHhC
Confidence 345555667788999999999999999999987643322100 0000001111111111111111111 1123
Q ss_pred hhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy597 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAA-VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 368 (546)
Q Consensus 290 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 368 (546)
|..+.++..++.++...|++++|...+.+..+.. ..++. ..........-+...+..+++...+.++....
T Consensus 184 P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~-----~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~--- 255 (409)
T TIGR00540 184 PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG-----LFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQ--- 255 (409)
T ss_pred CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHC---
Confidence 4455666677777777777777777766666541 11222 22222222222233344444444555554432
Q ss_pred cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH--HHHHHHHHHHcCCHHHHHHHHHHHH
Q psy597 369 LGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKT--KNNLASCYLKQGKYKEAEILYKQVL 446 (546)
Q Consensus 369 ~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~--~~~La~~y~~~g~~~eA~~~~~~al 446 (546)
+...+.....+..+|..+...|++++|...++++++. .|+.... ...........++.+.++..+++++
T Consensus 256 -p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--------~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~l 326 (409)
T TIGR00540 256 -PRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--------LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQA 326 (409)
T ss_pred -CHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--------CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHH
Confidence 0011136778888888889999999999999998886 3333321 1223333344577888888888888
Q ss_pred HhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHH--HHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy597 447 TRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQR--ALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQ 524 (546)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~--Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~ 524 (546)
+..|.+.. +......+|.+...|++.+|..+|++ +++. .|.... +..+|.++...|+.++|.++|++
T Consensus 327 k~~p~~~~--~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~--------~p~~~~-~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 327 KNVDDKPK--CCINRALGQLLMKHGEFIEAADAFKNVAACKE--------QLDAND-LAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HhCCCChh--HHHHHHHHHHHHHcccHHHHHHHHHHhHHhhc--------CCCHHH-HHHHHHHHHHcCCHHHHHHHHHH
Confidence 76554431 13344678888899999999999885 4443 454443 55899999999999999999999
Q ss_pred HHHHh
Q psy597 525 VLTRA 529 (546)
Q Consensus 525 al~~~ 529 (546)
++...
T Consensus 396 ~l~~~ 400 (409)
T TIGR00540 396 SLGLM 400 (409)
T ss_pred HHHHH
Confidence 87765
No 58
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.45 E-value=2.6e-11 Score=121.90 Aligned_cols=299 Identities=15% Similarity=0.083 Sum_probs=193.3
Q ss_pred cCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhh--HHHHHhhhhhhHHHHHHHHHHHHhcc
Q psy597 207 AGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETL--EDCALRSRKESYDIVKQAKVAQILGS 284 (546)
Q Consensus 207 ~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~--~~~~l~~~~~~~~~~~~~~~~~~l~~ 284 (546)
.....+...+..+..+..+...|++++|...++++++..|... .+... .............. ....+..
T Consensus 35 ~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~----~a~~~~~~~~~~~~~~~~~~~-----~~~~l~~ 105 (355)
T cd05804 35 ALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL----LALKLHLGAFGLGDFSGMRDH-----VARVLPL 105 (355)
T ss_pred HhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH----HHHHHhHHHHHhcccccCchh-----HHHHHhc
Confidence 3344445566777889999999999999999999998755432 11111 00001111111111 1111111
Q ss_pred CCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 285 GGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 364 (546)
Q Consensus 285 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 364 (546)
..+.+|....++..+|.++...|++++|+..+++++.+ .|....++..+|.++...|++++|+.++.+++..
T Consensus 106 ~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--------~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~ 177 (355)
T cd05804 106 WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL--------NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDT 177 (355)
T ss_pred cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhc
Confidence 35577888888999999999999999999999999987 3444678899999999999999999999999987
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH--HHHHHHHHHHcCCHHHHHHHH
Q psy597 365 REKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKT--KNNLASCYLKQGKYKEAEILY 442 (546)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~--~~~La~~y~~~g~~~eA~~~~ 442 (546)
... +.......+..+|.++...|++++|+..|++++... +..+..... ...+...+...|....+..+
T Consensus 178 ~~~----~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w- 247 (355)
T cd05804 178 WDC----SSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPS-----AESDPALDLLDAASLLWRLELAGHVDVGDRW- 247 (355)
T ss_pred cCC----CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccc-----cCCChHHHHhhHHHHHHHHHhcCCCChHHHH-
Confidence 521 112334567789999999999999999999986541 111122211 11233344455554444433
Q ss_pred HHHHHhhhhcccCcccC--CChhhHHHHhhchhhHHHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHcCCHHHHH
Q psy597 443 KQVLTRAHEREFGACDG--DNKPIWQDRQKNKAKNREKYYQRALEIYELKL-GPDDSNVAKTKNNLASCYLKQGKYKEAE 519 (546)
Q Consensus 443 ~~al~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~-~~~~~~~~~~~~~La~~y~~~g~~~~A~ 519 (546)
+.+.............. .....+.....|+...|...+........... ..............+.++...|++++|.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~ 327 (355)
T cd05804 248 EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATAL 327 (355)
T ss_pred HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHH
Confidence 22222211110111111 12344557778888888888888776654310 0112345667778899999999999999
Q ss_pred HHHHHHHHHhhhh
Q psy597 520 ILYKQVLTRAHER 532 (546)
Q Consensus 520 ~~~~~al~~~~~~ 532 (546)
..+..++......
T Consensus 328 ~~L~~al~~a~~~ 340 (355)
T cd05804 328 ELLGPVRDDLARI 340 (355)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988543
No 59
>KOG0495|consensus
Probab=99.44 E-value=5.8e-11 Score=118.43 Aligned_cols=225 Identities=17% Similarity=0.094 Sum_probs=111.6
Q ss_pred HhhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-------------hcCchhHHHhhHHHHHhhhhhh
Q psy597 203 QQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEK-------------TSGKYEAAETLEDCALRSRKES 269 (546)
Q Consensus 203 ~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-------------~~~~~~~a~~~~~~~l~~~~~~ 269 (546)
.....+.+..+.-.+|..-+..+...+-++-|...|..+++.++. ..|..+....++..+....+..
T Consensus 504 avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pka 583 (913)
T KOG0495|consen 504 AVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKA 583 (913)
T ss_pred HHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcc
Confidence 334456666777778888888888888888888888888776433 3344555555555544444333
Q ss_pred HHHHHHHHHH-----------HHhccCCCCChhHHHHHH---------------------------------HHHHHHHH
Q psy597 270 YDIVKQAKVA-----------QILGSGGHDHPDVATMLN---------------------------------ILALVYRD 305 (546)
Q Consensus 270 ~~~~~~~~~~-----------~~l~~~~~~~~~~~~~~~---------------------------------~la~~~~~ 305 (546)
......+... .++......+|..-.+|. .-+.+.+.
T Consensus 584 e~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ 663 (913)
T KOG0495|consen 584 EILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERY 663 (913)
T ss_pred hhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHH
Confidence 3222111100 011111112222333333 33344444
Q ss_pred hhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q psy597 306 QNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLAL 385 (546)
Q Consensus 306 ~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 385 (546)
+++.++|+.++++++..+ |.....|..+|.++..+++.+.|...|...+..+ |.....|..|+.
T Consensus 664 ld~~eeA~rllEe~lk~f--------p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c--------P~~ipLWllLak 727 (913)
T KOG0495|consen 664 LDNVEEALRLLEEALKSF--------PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKC--------PNSIPLWLLLAK 727 (913)
T ss_pred hhhHHHHHHHHHHHHHhC--------CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccC--------CCCchHHHHHHH
Confidence 444444444444444442 2233444444444444444444444444444443 444444444444
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 386 LCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 386 ~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
+-...|....|...++++.-. +|.....|.....+-++.|+.+.|.....++++.+|.
T Consensus 728 leEk~~~~~rAR~ildrarlk--------NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~ 785 (913)
T KOG0495|consen 728 LEEKDGQLVRARSILDRARLK--------NPKNALLWLESIRMELRAGNKEQAELLMAKALQECPS 785 (913)
T ss_pred HHHHhcchhhHHHHHHHHHhc--------CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 444444444444444444433 4444555555555555555555555555555555443
No 60
>KOG2003|consensus
Probab=99.43 E-value=8.7e-12 Score=119.07 Aligned_cols=223 Identities=15% Similarity=0.049 Sum_probs=179.1
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChh
Q psy597 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPD 291 (546)
Q Consensus 212 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (546)
.-++.++.+.|.+.+..|++++|...|++++. ++..
T Consensus 487 ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~--------------------------------------------ndas 522 (840)
T KOG2003|consen 487 RYNAAALTNKGNIAFANGDLDKAAEFYKEALN--------------------------------------------NDAS 522 (840)
T ss_pred ccCHHHhhcCCceeeecCcHHHHHHHHHHHHc--------------------------------------------CchH
Confidence 34455666666777777777777777777765 6677
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 371 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 371 (546)
...+++++|..+..+|+.++|+.+|-+.-.+.... +.++..++.+|..+.+..+|++++-++..+.
T Consensus 523 c~ealfniglt~e~~~~ldeald~f~klh~il~nn--------~evl~qianiye~led~aqaie~~~q~~sli------ 588 (840)
T KOG2003|consen 523 CTEALFNIGLTAEALGNLDEALDCFLKLHAILLNN--------AEVLVQIANIYELLEDPAQAIELLMQANSLI------ 588 (840)
T ss_pred HHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhh--------HHHHHHHHHHHHHhhCHHHHHHHHHHhcccC------
Confidence 88999999999999999999999999988876443 8889999999999999999999999998885
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 372 EHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 372 ~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
|..+.++..||.+|-+.|+-.+|..++-..... .|....+.-.||..|....-+++|+.+|+++--+.|.
T Consensus 589 --p~dp~ilskl~dlydqegdksqafq~~ydsyry--------fp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~ 658 (840)
T KOG2003|consen 589 --PNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY--------FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPN 658 (840)
T ss_pred --CCCHHHHHHHHHHhhcccchhhhhhhhhhcccc--------cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCcc
Confidence 777888999999999999999999999888777 6778888889999999999999999999998765433
Q ss_pred cccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCC
Q psy597 452 REFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGK 514 (546)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~ 514 (546)
.. ......+.+++..|++..|...|...-.. -|....++..|.++...+|-
T Consensus 659 ~~----kwqlmiasc~rrsgnyqka~d~yk~~hrk--------fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 659 QS----KWQLMIASCFRRSGNYQKAFDLYKDIHRK--------FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HH----HHHHHHHHHHHhcccHHHHHHHHHHHHHh--------CccchHHHHHHHHHhccccc
Confidence 11 11122344577788888887777765544 47778888888888877764
No 61
>PLN02789 farnesyltranstransferase
Probab=99.42 E-value=8.7e-11 Score=113.98 Aligned_cols=221 Identities=13% Similarity=0.074 Sum_probs=175.6
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChh
Q psy597 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPD 291 (546)
Q Consensus 212 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (546)
|....++..+-.++...+++++|+..+.+++.+ .|.
T Consensus 34 ~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~l--------------------------------------------nP~ 69 (320)
T PLN02789 34 PEFREAMDYFRAVYASDERSPRALDLTADVIRL--------------------------------------------NPG 69 (320)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--------------------------------------------Cch
Confidence 566677777777788899999999999999984 677
Q ss_pred HHHHHHHHHHHHHHhh-cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHh
Q psy597 292 VATMLNILALVYRDQN-KYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKY--KEAEPLCKRALEIREKV 368 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~ 368 (546)
...+|...+.++...| ++.+++..+++++.. .|....+|+..+.++...|+. ++++.++.++++.
T Consensus 70 ~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--------npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~---- 137 (320)
T PLN02789 70 NYTVWHFRRLCLEALDADLEEELDFAEDVAED--------NPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL---- 137 (320)
T ss_pred hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--------CCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh----
Confidence 7889999999999998 689999999999987 455577899999999999874 7889999999988
Q ss_pred cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc---CCH----HHHHHH
Q psy597 369 LGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ---GKY----KEAEIL 441 (546)
Q Consensus 369 ~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~---g~~----~eA~~~ 441 (546)
+|....+|...+.++...|++++|+.++.++++. ++....+|+..+.+.... |.+ ++++.+
T Consensus 138 ----dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~--------d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 138 ----DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE--------DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred ----CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--------CCCchhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 5888999999999999999999999999999999 888899999999988776 333 478888
Q ss_pred HHHHHHhhhhcccCcccCCChhhHHHHh----hchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHc
Q psy597 442 YKQVLTRAHEREFGACDGDNKPIWQDRQ----KNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ 512 (546)
Q Consensus 442 ~~~al~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~ 512 (546)
..+++...|.+. .+....+.++.. .+...++...+.+++.. .+....++..|+.+|...
T Consensus 206 ~~~aI~~~P~N~----SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~--------~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 206 TIDAILANPRNE----SPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK--------DSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHHHHhCCCCc----CHHHHHHHHHhcCCcccccchhHHHHHHHhhcc--------cCCcHHHHHHHHHHHHhh
Confidence 889998866543 223334444433 12334455555555442 566778889999999863
No 62
>KOG2076|consensus
Probab=99.42 E-value=8.4e-11 Score=121.71 Aligned_cols=294 Identities=17% Similarity=0.154 Sum_probs=170.5
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChh
Q psy597 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPD 291 (546)
Q Consensus 212 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (546)
+..+..+...|...+..|++++|.+++.++++..+...-. ...+.......++..........+.. ..|.
T Consensus 136 ~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~a----y~tL~~IyEqrGd~eK~l~~~llAAH------L~p~ 205 (895)
T KOG2076|consen 136 APELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIA----YYTLGEIYEQRGDIEKALNFWLLAAH------LNPK 205 (895)
T ss_pred CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhh----HHHHHHHHHHcccHHHHHHHHHHHHh------cCCC
Confidence 4557888999999999999999999999999865544321 11222222222222222222222221 2333
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 371 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 371 (546)
....|..++.....+|++..|.-+|.+|++. .|......+..+.+|.++|++..|...|.+++.... +
T Consensus 206 d~e~W~~ladls~~~~~i~qA~~cy~rAI~~--------~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p----~ 273 (895)
T KOG2076|consen 206 DYELWKRLADLSEQLGNINQARYCYSRAIQA--------NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP----P 273 (895)
T ss_pred ChHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC----c
Confidence 3356677777777777777777777777766 344455666677777777777777777777776641 0
Q ss_pred CChH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q psy597 372 EHPD-VAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAH 450 (546)
Q Consensus 372 ~~~~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~ 450 (546)
.+.. .-..-...+..+...++-+.|+..++.++.. ..+......++.++.++++...++.|............
T Consensus 274 ~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~------~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~ 347 (895)
T KOG2076|consen 274 VDIERIEDLIRRVAHYFITHNERERAAKALEGALSK------EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRES 347 (895)
T ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh------ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhcccc
Confidence 0001 1222233355666666666677777666663 22334445566777778888888877776655444100
Q ss_pred hc----------------------ccCcccCCC-hh--hHHHHhh-------------c------------hhhHH---H
Q psy597 451 ER----------------------EFGACDGDN-KP--IWQDRQK-------------N------------KAKNR---E 477 (546)
Q Consensus 451 ~~----------------------~~~~~~~~~-~~--~~~~~~~-------------~------------~~~~A---~ 477 (546)
++ ....+.... .. +...... . +..+| .
T Consensus 348 e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~ 427 (895)
T KOG2076|consen 348 EKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNI 427 (895)
T ss_pred CCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhc
Confidence 00 000000000 00 0000000 0 01111 2
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhc
Q psy597 478 KYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHERE 533 (546)
Q Consensus 478 ~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~~~ 533 (546)
+.|..|+..+.............+|..+|.||..+|.+++|+.+|++++...|++.
T Consensus 428 ~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~ 483 (895)
T KOG2076|consen 428 GKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNL 483 (895)
T ss_pred ccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCch
Confidence 23455555555555444445577999999999999999999999999999887653
No 63
>KOG0624|consensus
Probab=99.42 E-value=4.7e-11 Score=110.53 Aligned_cols=210 Identities=20% Similarity=0.177 Sum_probs=172.5
Q ss_pred CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCC
Q psy597 208 GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGH 287 (546)
Q Consensus 208 ~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 287 (546)
...+|.++.-.+.+|..++..|++..|+..|..|++
T Consensus 31 ~~~~~advekhlElGk~lla~~Q~sDALt~yHaAve-------------------------------------------- 66 (504)
T KOG0624|consen 31 STASPADVEKHLELGKELLARGQLSDALTHYHAAVE-------------------------------------------- 66 (504)
T ss_pred hcCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHc--------------------------------------------
Confidence 345688999999999999999999999999999998
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
.+|....+++..|.+|..+|+-.-|+.-+.+++++ .|....+....|.++.++|.+++|+.-|..++...
T Consensus 67 ~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--------KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~-- 136 (504)
T KOG0624|consen 67 GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--------KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHE-- 136 (504)
T ss_pred CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--------CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcC--
Confidence 56888889999999999999999999999999988 67788899999999999999999999999998763
Q ss_pred hcCCCChHHH------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCH
Q psy597 368 VLGKEHPDVA------------KQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKY 435 (546)
Q Consensus 368 ~~~~~~~~~~------------~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~ 435 (546)
++..... +.+......+...|++..|+.+....+++ .|..+..+...+.||...|+.
T Consensus 137 ---~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi--------~~Wda~l~~~Rakc~i~~~e~ 205 (504)
T KOG0624|consen 137 ---PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI--------QPWDASLRQARAKCYIAEGEP 205 (504)
T ss_pred ---CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc--------CcchhHHHHHHHHHHHhcCcH
Confidence 1111111 22333344556789999999999999999 899999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHH
Q psy597 436 KEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEI 486 (546)
Q Consensus 436 ~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~ 486 (546)
..|+.-++.+-++..++. .....+...++..|+...++...++.+++
T Consensus 206 k~AI~Dlk~askLs~DnT----e~~ykis~L~Y~vgd~~~sL~~iRECLKl 252 (504)
T KOG0624|consen 206 KKAIHDLKQASKLSQDNT----EGHYKISQLLYTVGDAENSLKEIRECLKL 252 (504)
T ss_pred HHHHHHHHHHHhccccch----HHHHHHHHHHHhhhhHHHHHHHHHHHHcc
Confidence 999999998887643322 23344555567777777777777777765
No 64
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.41 E-value=5e-11 Score=120.91 Aligned_cols=204 Identities=11% Similarity=0.121 Sum_probs=118.3
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHH
Q psy597 297 NILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDV 376 (546)
Q Consensus 297 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 376 (546)
...+.+....|+++.|..+|.++.+.. + ++. .......+.++...|++++|...+++..+.. |..
T Consensus 122 llaA~aA~~~g~~~~A~~~l~~A~~~~-----~-~~~-~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~--------P~~ 186 (398)
T PRK10747 122 LLAAEAAQQRGDEARANQHLERAAELA-----D-NDQ-LPVEITRVRIQLARNENHAARHGVDKLLEVA--------PRH 186 (398)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcC-----C-cch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------CCC
Confidence 333555577788888888888877652 1 111 1122234777888888888888888877763 666
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------------------HHH---------------hcCCCChHHHHHH
Q psy597 377 AKQLNNLALLCQNQSKYEEVERYYQRALEI-------------------YEL---------------KLGPDDSNVAKTK 422 (546)
Q Consensus 377 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~-------------------~~~---------------~~~~~~~~~~~~~ 422 (546)
..++..++.+|...|++++|+..+.+..+. ... ..+...+..+.+.
T Consensus 187 ~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~ 266 (398)
T PRK10747 187 PEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQ 266 (398)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHH
Confidence 677777788888888888887665544421 000 0111133456677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Q psy597 423 NNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTK 502 (546)
Q Consensus 423 ~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~ 502 (546)
..+|..+...|+.++|...++++++..+... ..........++...+...+++.++. +|+.+..+
T Consensus 267 ~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~-------l~~l~~~l~~~~~~~al~~~e~~lk~--------~P~~~~l~ 331 (398)
T PRK10747 267 VAMAEHLIECDDHDTAQQIILDGLKRQYDER-------LVLLIPRLKTNNPEQLEKVLRQQIKQ--------HGDTPLLW 331 (398)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH-------HHHHHhhccCCChHHHHHHHHHHHhh--------CCCCHHHH
Confidence 8889999999999999999999988432211 00111112224444444444433332 34444444
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q psy597 503 NNLASCYLKQGKYKEAEILYKQVLTRAH 530 (546)
Q Consensus 503 ~~La~~y~~~g~~~~A~~~~~~al~~~~ 530 (546)
..+|.++...|++++|..+|+++++..|
T Consensus 332 l~lgrl~~~~~~~~~A~~~le~al~~~P 359 (398)
T PRK10747 332 STLGQLLMKHGEWQEASLAFRAALKQRP 359 (398)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 4555555555555555555555554433
No 65
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.40 E-value=9.4e-11 Score=110.30 Aligned_cols=203 Identities=14% Similarity=0.139 Sum_probs=135.7
Q ss_pred hHHHHHcCcCHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Q psy597 72 SLEIIELGLNEAQVMTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSSEQANSQLEEEKKHLEFMSSI 151 (546)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~~~~~qlee~~~~l~~~~~l 151 (546)
.||.+..+ ..+++..|.+.|+.++.|+.+||+||+++..+. ..++++....+..+... ... +
T Consensus 44 ~le~~~~~--~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l-------~~~~~rq~~~y~dld~r---~~~------~ 105 (263)
T PRK10803 44 QLERISNA--HSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQL-------NQVVERQKQIYLQIDSL---SSG------G 105 (263)
T ss_pred HHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-------HHHHHHHHHHHHHHHHH---Hhc------c
Confidence 44544443 247888999999999999999999998877666 44455555555544432 111 0
Q ss_pred hhcCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCcCCCCCCCCChhhHHHhhhcCCCchHHHHHHHHHHHHH-HHcCC
Q psy597 152 RKYDSDIQGDENSGDQKSDKHKQDDPVVDLFPDEDNDDRNNLSPTPPSQFAQQVNAGYEIPARLRTLHNLVIQY-ASQGR 230 (546)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~lg~~~-~~~g~ 230 (546)
..... +.... . . .....-++..... ..+. .+..+......+..|..+ ...|+
T Consensus 106 ~~~~~---~~~~~----~-~-----~~~~~~~~~~~~~---~~~~-----------~~~~~~~e~~~Y~~A~~l~~~~~~ 158 (263)
T PRK10803 106 AAAQS---TSGDQ----S-G-----AAASATPAADAGT---ANAG-----------APVQSGDANTDYNAAIALVQDKSR 158 (263)
T ss_pred ccCCc---ccccc----c-c-----CCCccccccCccc---cccc-----------CCCCCCCHHHHHHHHHHHHHhcCC
Confidence 00000 00000 0 0 0000000000000 0000 011122345667777765 66799
Q ss_pred HHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHhhcHH
Q psy597 231 YEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYK 310 (546)
Q Consensus 231 ~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~ 310 (546)
|++|+..|+..++.+| +.+..+.+++++|.+|+..|+++
T Consensus 159 y~~Ai~af~~fl~~yP-----------------------------------------~s~~a~~A~y~LG~~y~~~g~~~ 197 (263)
T PRK10803 159 QDDAIVAFQNFVKKYP-----------------------------------------DSTYQPNANYWLGQLNYNKGKKD 197 (263)
T ss_pred HHHHHHHHHHHHHHCc-----------------------------------------CCcchHHHHHHHHHHHHHcCCHH
Confidence 9999999999998633 55666788999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy597 311 EAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 365 (546)
Q Consensus 311 ~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 365 (546)
+|+..|.+++..+ ++++....+++.+|.++...|++++|..+|+++++.+
T Consensus 198 ~A~~~f~~vv~~y-----P~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 198 DAAYYFASVVKNY-----PKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHHHHHHHC-----CCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 9999999999887 6678899999999999999999999999999999886
No 66
>KOG1941|consensus
Probab=99.40 E-value=6.5e-11 Score=110.35 Aligned_cols=265 Identities=14% Similarity=0.105 Sum_probs=211.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHH
Q psy597 217 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATML 296 (546)
Q Consensus 217 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 296 (546)
.....|..++...++++|+..+.+.+..... .......+
T Consensus 8 ~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~-----------------------------------------~~~Rf~~l 46 (518)
T KOG1941|consen 8 KQIEKGLQLYQSNQTEKALQVWTKVLEKLSD-----------------------------------------LMGRFRVL 46 (518)
T ss_pred HHHHHHHhHhcCchHHHHHHHHHHHHHHHHH-----------------------------------------HHHHHHHh
Confidence 3455677888999999999999998875433 23344556
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHH
Q psy597 297 NILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDV 376 (546)
Q Consensus 297 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 376 (546)
-.+..+...+|.|++++.+--..++.+... .+......++.+++..+....++.+++.+....+.+--...+ ..-
T Consensus 47 G~l~~a~s~~g~y~~mL~~a~sqi~~a~~~--~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~---~~~ 121 (518)
T KOG1941|consen 47 GCLVTAHSEMGRYKEMLKFAVSQIDTAREL--EDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAG---QLG 121 (518)
T ss_pred ccchhhhhhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcc---ccc
Confidence 677788889999999988887777777666 667777899999999999999999999999888776211100 122
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCc
Q psy597 377 AKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGA 456 (546)
Q Consensus 377 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~ 456 (546)
..+...+|..+..++.+++++++|++|+.+.... .|......++..||.+|....++++|..+..++.++...-..+.
T Consensus 122 gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~--~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d 199 (518)
T KOG1941|consen 122 GQVSLSMGNAHLGLSVFQKALESFEKALRYAHNN--DDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKD 199 (518)
T ss_pred chhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhcc--CCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCc
Confidence 4566779999999999999999999999997665 44445667889999999999999999999999999877655443
Q ss_pred ccC------CChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q psy597 457 CDG------DNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAH 530 (546)
Q Consensus 457 ~~~------~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~ 530 (546)
+.. ...+...++..|....|.++.++|.++.-.. ++.+..+.....+|.+|...|+.+.|..-|+.|+....
T Consensus 200 ~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~--Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~ 277 (518)
T KOG1941|consen 200 WSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQH--GDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMA 277 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHh--CChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHh
Confidence 332 2334445788899999999999999887655 56788999999999999999999999999999998765
Q ss_pred h
Q psy597 531 E 531 (546)
Q Consensus 531 ~ 531 (546)
.
T Consensus 278 ~ 278 (518)
T KOG1941|consen 278 S 278 (518)
T ss_pred h
Confidence 4
No 67
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.39 E-value=2.8e-11 Score=116.68 Aligned_cols=195 Identities=19% Similarity=0.191 Sum_probs=154.8
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChh
Q psy597 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPD 291 (546)
Q Consensus 212 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (546)
..-+..+...|.+|...|+|++|...|.++.+...+.. +...
T Consensus 32 e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~--------------------------------------~~~~ 73 (282)
T PF14938_consen 32 EEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLG--------------------------------------DKFE 73 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT---------------------------------------HHH
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcC--------------------------------------CHHH
Confidence 45567888999999999999999999999999877644 4566
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhcC
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKR-GKYKEAEPLCKRALEIREKVLG 370 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~ 370 (546)
.+..+...+.+|... ++++|+.+|++|+.++... ++....+.++..+|.+|... |++++|+.+|++|+++++..
T Consensus 74 Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~--G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e-- 148 (282)
T PF14938_consen 74 AAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREA--GRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQE-- 148 (282)
T ss_dssp HHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHC--T-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC--
Confidence 677788878887666 9999999999999999887 66777889999999999999 99999999999999999876
Q ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q psy597 371 KEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAH 450 (546)
Q Consensus 371 ~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~ 450 (546)
+.......++..+|.++...|+|++|+..|++....+.... .........+...+.|++..|++..|...+++.....|
T Consensus 149 ~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~-l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~ 227 (282)
T PF14938_consen 149 GSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENN-LLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDP 227 (282)
T ss_dssp T-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHC-TTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTST
T ss_pred CChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccc-ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 33455677889999999999999999999999887532220 01233445667888999999999999999988876644
No 68
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.38 E-value=1.4e-10 Score=117.70 Aligned_cols=237 Identities=11% Similarity=0.019 Sum_probs=160.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHHH
Q psy597 218 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLN 297 (546)
Q Consensus 218 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 297 (546)
+...+......|+++.|..+|.++.+..+. .. .....
T Consensus 121 ~llaA~aA~~~g~~~~A~~~l~~A~~~~~~------------------------------------------~~-~~~~l 157 (398)
T PRK10747 121 YLLAAEAAQQRGDEARANQHLERAAELADN------------------------------------------DQ-LPVEI 157 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCc------------------------------------------ch-HHHHH
Confidence 334455668999999999999998763111 11 11122
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH------------
Q psy597 298 ILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR------------ 365 (546)
Q Consensus 298 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------------ 365 (546)
..+.++...|+++.|...+++..+. .|....++..++.+|...|++++|+..+.+..+..
T Consensus 158 ~~a~l~l~~g~~~~Al~~l~~~~~~--------~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~ 229 (398)
T PRK10747 158 TRVRIQLARNENHAARHGVDKLLEV--------APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQ 229 (398)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 2356666666666666666666554 23334555556666666666666664444433210
Q ss_pred -------H---------------HhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Q psy597 366 -------E---------------KVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKN 423 (546)
Q Consensus 366 -------~---------------~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~ 423 (546)
. +......|..+.+...+|..+...|+.++|...++++++. +.++.....
T Consensus 230 ~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~------~~~~~l~~l-- 301 (398)
T PRK10747 230 QAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR------QYDERLVLL-- 301 (398)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------CCCHHHHHH--
Confidence 0 0000112445667788999999999999999999999885 334432222
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Q psy597 424 NLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKN 503 (546)
Q Consensus 424 ~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~ 503 (546)
.+. ...+++++++..+++.++..|++. ......+..+...+++..|..+|++++.. .|... .+.
T Consensus 302 -~~~--l~~~~~~~al~~~e~~lk~~P~~~----~l~l~lgrl~~~~~~~~~A~~~le~al~~--------~P~~~-~~~ 365 (398)
T PRK10747 302 -IPR--LKTNNPEQLEKVLRQQIKQHGDTP----LLWSTLGQLLMKHGEWQEASLAFRAALKQ--------RPDAY-DYA 365 (398)
T ss_pred -Hhh--ccCCChHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCHH-HHH
Confidence 222 245999999999999998766543 33455677799999999999999999987 56543 456
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHh
Q psy597 504 NLASCYLKQGKYKEAEILYKQVLTRA 529 (546)
Q Consensus 504 ~La~~y~~~g~~~~A~~~~~~al~~~ 529 (546)
.++.++...|+.++|..+|++++.+.
T Consensus 366 ~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 366 WLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 89999999999999999999999865
No 69
>KOG0550|consensus
Probab=99.38 E-value=1.8e-11 Score=116.09 Aligned_cols=293 Identities=16% Similarity=0.082 Sum_probs=213.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhH
Q psy597 213 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDV 292 (546)
Q Consensus 213 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 292 (546)
..+......|..++...+|..|+..|..|++.++.....+..- ......+..+.....-.... ....+..
T Consensus 47 ~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nR-Aa~~m~~~~~~~a~~dar~~---------~r~kd~~ 116 (486)
T KOG0550|consen 47 QQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNR-AATLMMLGRFEEALGDARQS---------VRLKDGF 116 (486)
T ss_pred HHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchh-HHHHHHHHhHhhcccchhhh---------eecCCCc
Confidence 4566778889999999999999999999999988763222211 11112222222211111111 1223444
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHH--------HHHHHhcC--CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy597 293 ATMLNILALVYRDQNKYKEAANLLNDAL--------TIREKTLG--ENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRAL 362 (546)
Q Consensus 293 ~~~~~~la~~~~~~g~~~~A~~~~~~al--------~~~~~~~g--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 362 (546)
.......+.++...++..+|...++..- ........ ...|....+-..-+.++...|++++|...--..+
T Consensus 117 ~k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~il 196 (486)
T KOG0550|consen 117 SKGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDIL 196 (486)
T ss_pred cccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHH
Confidence 5566667777777777777766654211 11111100 1225555666677899999999999999888888
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC----CCChHHHHHHHHHHHHHHHcCCHHHH
Q psy597 363 EIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLG----PDDSNVAKTKNNLASCYLKQGKYKEA 438 (546)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~----~~~~~~~~~~~~La~~y~~~g~~~eA 438 (546)
++ ++....++...|.+++..++.+.|+..|++++.+-..... ...+.....+..-|.-.++.|++.+|
T Consensus 197 kl--------d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A 268 (486)
T KOG0550|consen 197 KL--------DATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKA 268 (486)
T ss_pred hc--------ccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHH
Confidence 77 4788999999999999999999999999999987211100 00233455666778889999999999
Q ss_pred HHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHH
Q psy597 439 EILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEA 518 (546)
Q Consensus 439 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A 518 (546)
.+.|.+++.+.|.+.-.....+.+.+......|+..+|+.....|+.+ ++....++...|.||..+++|++|
T Consensus 269 ~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--------D~syikall~ra~c~l~le~~e~A 340 (486)
T KOG0550|consen 269 YECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--------DSSYIKALLRRANCHLALEKWEEA 340 (486)
T ss_pred HHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--------CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988876666666677777788999999999999999998 899999999999999999999999
Q ss_pred HHHHHHHHHHhhh
Q psy597 519 EILYKQVLTRAHE 531 (546)
Q Consensus 519 ~~~~~~al~~~~~ 531 (546)
.+.|++|++...+
T Consensus 341 V~d~~~a~q~~~s 353 (486)
T KOG0550|consen 341 VEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHhhccc
Confidence 9999999987654
No 70
>KOG0548|consensus
Probab=99.37 E-value=8.1e-11 Score=115.49 Aligned_cols=245 Identities=24% Similarity=0.266 Sum_probs=174.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHH
Q psy597 214 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVA 293 (546)
Q Consensus 214 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 293 (546)
.....-.+|...+...++..|+..|..++++. ...
T Consensus 223 ~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~---------------------------------------------~~i 257 (539)
T KOG0548|consen 223 KAHKEKELGNAAYKKKDFETAIQHYAKALELA---------------------------------------------TDI 257 (539)
T ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh---------------------------------------------hhh
Confidence 45567889999999999999999999999852 445
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--hcC-
Q psy597 294 TMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK--VLG- 370 (546)
Q Consensus 294 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~~~- 370 (546)
..+.+.+-+|+..|.+.+.+....++++.-...- .+...++.++..+|..|...++++.|+.+|.+++.-.+. ...
T Consensus 258 t~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~r-ad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~ 336 (539)
T KOG0548|consen 258 TYLNNIAAVYLERGKYAECIELCEKAVEVGRELR-ADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSK 336 (539)
T ss_pred HHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHH-HHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHH
Confidence 5577888899999999998888888877643320 112335666777889999999999999999998865432 000
Q ss_pred ---------------CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCH
Q psy597 371 ---------------KEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKY 435 (546)
Q Consensus 371 ---------------~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~ 435 (546)
--.|..+.-...-|..++..|+|..|+.+|.+|+.. +|..+..|.|.|.||.++|.+
T Consensus 337 lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--------~P~Da~lYsNRAac~~kL~~~ 408 (539)
T KOG0548|consen 337 LKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR--------DPEDARLYSNRAACYLKLGEY 408 (539)
T ss_pred HHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--------CCchhHHHHHHHHHHHHHhhH
Confidence 012333444555688888999999999999998887 788889999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCH
Q psy597 436 KEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKY 515 (546)
Q Consensus 436 ~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~ 515 (546)
..|+...+.++++.|+.. ..+..-+.++....+++.|...|.++++. +|....+...+..|+..+...
T Consensus 409 ~~aL~Da~~~ieL~p~~~----kgy~RKg~al~~mk~ydkAleay~eale~--------dp~~~e~~~~~~rc~~a~~~~ 476 (539)
T KOG0548|consen 409 PEALKDAKKCIELDPNFI----KAYLRKGAALRAMKEYDKALEAYQEALEL--------DPSNAEAIDGYRRCVEAQRGD 476 (539)
T ss_pred HHHHHHHHHHHhcCchHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------CchhHHHHHHHHHHHHHhhcC
Confidence 999999888888743321 12222333455555566666666666554 567777777777777664333
Q ss_pred HHHHHHHHH
Q psy597 516 KEAEILYKQ 524 (546)
Q Consensus 516 ~~A~~~~~~ 524 (546)
....+.+++
T Consensus 477 ~~~ee~~~r 485 (539)
T KOG0548|consen 477 ETPEETKRR 485 (539)
T ss_pred CCHHHHHHh
Confidence 334444444
No 71
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.36 E-value=1.6e-10 Score=106.48 Aligned_cols=242 Identities=16% Similarity=0.154 Sum_probs=194.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHHH
Q psy597 218 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLN 297 (546)
Q Consensus 218 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 297 (546)
-+..|.-+.-..+.++|+..|...++ .+|....+..
T Consensus 38 ~Yv~GlNfLLs~Q~dKAvdlF~e~l~--------------------------------------------~d~~t~e~~l 73 (389)
T COG2956 38 DYVKGLNFLLSNQPDKAVDLFLEMLQ--------------------------------------------EDPETFEAHL 73 (389)
T ss_pred HHHhHHHHHhhcCcchHHHHHHHHHh--------------------------------------------cCchhhHHHH
Confidence 34456667778889999999988887 5688889999
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChH
Q psy597 298 ILALVYRDQNKYKEAANLLNDALTIREKTLGEN--HAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPD 375 (546)
Q Consensus 298 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 375 (546)
.||.+|...|..+.|+..-+..+.. ++ ......++..||.-|...|-++.|+..|....+.- ..
T Consensus 74 tLGnLfRsRGEvDRAIRiHQ~L~~s------pdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~--------ef 139 (389)
T COG2956 74 TLGNLFRSRGEVDRAIRIHQTLLES------PDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG--------EF 139 (389)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC------CCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch--------hh
Confidence 9999999999999999998877654 33 23346688999999999999999999999988752 44
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccC
Q psy597 376 VAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFG 455 (546)
Q Consensus 376 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~ 455 (546)
...++..|..+|....+|++|+...++...+-.+ +.....+..|..||..+....+.+.|...++++++..++..
T Consensus 140 a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q---~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cv-- 214 (389)
T COG2956 140 AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ---TYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCV-- 214 (389)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc---cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccce--
Confidence 5668889999999999999999999988877211 22446788899999999999999999999999998755432
Q ss_pred cccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q psy597 456 ACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 531 (546)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~ 531 (546)
......+......|++..|.+.++.+++ .++.....+...|..+|..+|+.++...++.++.+..+.
T Consensus 215 --RAsi~lG~v~~~~g~y~~AV~~~e~v~e-------Qn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 215 --RASIILGRVELAKGDYQKAVEALERVLE-------QNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred --ehhhhhhHHHHhccchHHHHHHHHHHHH-------hChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 3344555666666776666666666554 455667889999999999999999999999999987654
No 72
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.35 E-value=5.7e-10 Score=126.39 Aligned_cols=237 Identities=13% Similarity=0.024 Sum_probs=176.4
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 371 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 371 (546)
...+...+|.++...|++++|..++++++..... .+......+...+|.++...|++++|..++.+++...... +
T Consensus 451 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~--g 525 (903)
T PRK04841 451 QAEFNALRAQVAINDGDPEEAERLAELALAELPL---TWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQH--D 525 (903)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC---ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh--c
Confidence 4556667889999999999999999999875321 2223345677889999999999999999999999987754 2
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 372 EHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 372 ~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
.......++.++|.++...|++++|..++++++.+.....++..+....++..+|.++...|++++|...+.+++.....
T Consensus 526 ~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~ 605 (903)
T PRK04841 526 VYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSN 605 (903)
T ss_pred chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhc
Confidence 33445668889999999999999999999999999887644444545566778999999999999999999999987653
Q ss_pred cccC-cccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcC-------------------------------------C
Q psy597 452 REFG-ACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLG-------------------------------------P 493 (546)
Q Consensus 452 ~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~-------------------------------------~ 493 (546)
.... ........+..+...|++..|...+.++..+...... .
T Consensus 606 ~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~ 685 (903)
T PRK04841 606 YQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFA 685 (903)
T ss_pred cCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCc
Confidence 2211 1112223444577889999999888888765432100 0
Q ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhc
Q psy597 494 DDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHERE 533 (546)
Q Consensus 494 ~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~~~ 533 (546)
........+..++.++...|++++|...+++++......+
T Consensus 686 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g 725 (903)
T PRK04841 686 NNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLR 725 (903)
T ss_pred cchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence 0000111245788999999999999999999999865543
No 73
>KOG2076|consensus
Probab=99.35 E-value=2.9e-10 Score=117.80 Aligned_cols=293 Identities=17% Similarity=0.109 Sum_probs=209.4
Q ss_pred hhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhc
Q psy597 204 QVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILG 283 (546)
Q Consensus 204 ~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 283 (546)
+.+....+|..+.+|+.+|.+|..+|+.++|...+-.|-.+.++.. +.+..+........ ....+...+..+
T Consensus 162 ~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~---e~W~~ladls~~~~-~i~qA~~cy~rA---- 233 (895)
T KOG2076|consen 162 LMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDY---ELWKRLADLSEQLG-NINQARYCYSRA---- 233 (895)
T ss_pred HHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCh---HHHHHHHHHHHhcc-cHHHHHHHHHHH----
Confidence 3344567899999999999999999999999988877766544433 22222222221110 001111111111
Q ss_pred cCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 284 SGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALE 363 (546)
Q Consensus 284 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 363 (546)
....|......+..+.+|...|++..|...|.+++...+. .+-...-......+..+...++-+.|++.++.++.
T Consensus 234 --I~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~---~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 234 --IQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPP---VDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred --HhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCc---hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 1234666778889999999999999999999999988531 12233445556668889999999999999999988
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------------------HHH-------------
Q psy597 364 IREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALE----------------------IYE------------- 408 (546)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~----------------------~~~------------- 408 (546)
. .........++.++.++.....++.|......-.. ++.
T Consensus 309 ~------~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~r 382 (895)
T KOG2076|consen 309 K------EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIR 382 (895)
T ss_pred h------ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHh
Confidence 4 22344556677888999988888888877655444 100
Q ss_pred H---------------------hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHH
Q psy597 409 L---------------------KLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQD 467 (546)
Q Consensus 409 ~---------------------~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 467 (546)
. .........+..+..++.+|...|++.+|+.+|..+....+ ......+...+.++
T Consensus 383 l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~---~~~~~vw~~~a~c~ 459 (895)
T KOG2076|consen 383 LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREG---YQNAFVWYKLARCY 459 (895)
T ss_pred HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcc---ccchhhhHHHHHHH
Confidence 0 00000234567888999999999999999999998876422 22344566777889
Q ss_pred HhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy597 468 RQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526 (546)
Q Consensus 468 ~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al 526 (546)
...+.++.|..+|.+++.. .|....+...|+.+|..+|++++|.+.++...
T Consensus 460 ~~l~e~e~A~e~y~kvl~~--------~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 460 MELGEYEEAIEFYEKVLIL--------APDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHhhHHHHHHHHHHHHhc--------CCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 9999999999999999977 78889999999999999999999998888765
No 74
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.35 E-value=1.2e-10 Score=118.85 Aligned_cols=163 Identities=13% Similarity=0.040 Sum_probs=120.2
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Q psy597 300 ALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQ 379 (546)
Q Consensus 300 a~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 379 (546)
..-+...+..+++...+.++....+. ..+.....+..+|..+...|++++|...++++++.. |+....
T Consensus 232 ~~~~l~~~~~~~~~~~L~~~~~~~p~----~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--------pd~~~~ 299 (409)
T TIGR00540 232 EIGLLDEAMADEGIDGLLNWWKNQPR----HRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--------GDDRAI 299 (409)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHCCH----HHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--------CCcccc
Confidence 33335555666666677777655311 133478899999999999999999999999999974 333321
Q ss_pred --HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHH--HHHHHHHHHHHHcCCHHHHHHHHHH--HHHhhhhcc
Q psy597 380 --LNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVA--KTKNNLASCYLKQGKYKEAEILYKQ--VLTRAHERE 453 (546)
Q Consensus 380 --~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~--~~~~~La~~y~~~g~~~eA~~~~~~--al~~~~~~~ 453 (546)
...........++.+.++..++++++. +|+.+ ..+..+|.++...|++++|.++|+. +++..|+..
T Consensus 300 ~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--------~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~ 371 (409)
T TIGR00540 300 SLPLCLPIPRLKPEDNEKLEKLIEKQAKN--------VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAN 371 (409)
T ss_pred hhHHHHHhhhcCCCChHHHHHHHHHHHHh--------CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH
Confidence 122333344568889999999999987 66666 8889999999999999999999994 655544322
Q ss_pred cCcccCCChhhHHHHhhchhhHHHHHHHHHHHHH
Q psy597 454 FGACDGDNKPIWQDRQKNKAKNREKYYQRALEIY 487 (546)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~ 487 (546)
.....+..+...|+.++|..+|++++...
T Consensus 372 -----~~~~La~ll~~~g~~~~A~~~~~~~l~~~ 400 (409)
T TIGR00540 372 -----DLAMAADAFDQAGDKAEAAAMRQDSLGLM 400 (409)
T ss_pred -----HHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 13356777889999999999999998664
No 75
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.33 E-value=7.7e-10 Score=123.23 Aligned_cols=205 Identities=11% Similarity=0.016 Sum_probs=153.7
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q psy597 293 ATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKE 372 (546)
Q Consensus 293 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 372 (546)
..++..+...|...|++++|.++|+.+.+. + .+....+|+.+...|.+.|++++|..+|.++... +-
T Consensus 579 ~vTynaLI~ay~k~G~ldeA~elf~~M~e~------g-i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~------Gv 645 (1060)
T PLN03218 579 HITVGALMKACANAGQVDRAKEVYQMIHEY------N-IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK------GV 645 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc------C-CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CC
Confidence 456777888899999999999999887654 1 1223567888889999999999999999988764 22
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhc
Q psy597 373 HPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 452 (546)
Q Consensus 373 ~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~ 452 (546)
.|+ ..+|..+...|...|++++|..++.++.+. + .+....++..+...|.+.|++++|..+|+++......
T Consensus 646 ~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~------G-~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~- 716 (1060)
T PLN03218 646 KPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQ------G-IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLR- 716 (1060)
T ss_pred CCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc------C-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-
Confidence 243 567888889999999999999999988764 1 2334567889999999999999999999987653211
Q ss_pred ccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 453 EFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 528 (546)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~ 528 (546)
.....++.++..+...|++++|...|.+.... +-.|+ ..+|..+...+.+.|++++|..++.++.+.
T Consensus 717 --PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~------Gi~Pd-~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 717 --PTVSTMNALITALCEGNQLPKALEVLSEMKRL------GLCPN-TITYSILLVASERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred --CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 12233455566688889999998888876532 11333 456777778999999999999999988764
No 76
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.31 E-value=4.8e-11 Score=102.47 Aligned_cols=112 Identities=14% Similarity=0.148 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCC
Q psy597 313 ANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSK 392 (546)
Q Consensus 313 ~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 392 (546)
..+|++++++ .|.. +..+|.++...|++++|+.+|++++.. +|....++.++|.++...|+
T Consensus 13 ~~~~~~al~~--------~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~ 73 (144)
T PRK15359 13 EDILKQLLSV--------DPET---VYASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMMLKE 73 (144)
T ss_pred HHHHHHHHHc--------CHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhh
Confidence 4567788876 3432 567899999999999999999999988 48889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 393 YEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 393 ~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
+++|+..|++++.+ +|..+.+++++|.++...|++++|+..|.+++...+.
T Consensus 74 ~~~A~~~y~~Al~l--------~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~ 124 (144)
T PRK15359 74 YTTAINFYGHALML--------DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYA 124 (144)
T ss_pred HHHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999999999998 8889999999999999999999999999999987543
No 77
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.30 E-value=5.3e-11 Score=102.21 Aligned_cols=112 Identities=10% Similarity=0.003 Sum_probs=101.6
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChH
Q psy597 296 LNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPD 375 (546)
Q Consensus 296 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 375 (546)
+..+|.++...|++++|+.+|.+++.+ .|....++..+|.++...|++++|+..|.+++.+ .|.
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l--------~p~ 90 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMMLKEYTTAINFYGHALML--------DAS 90 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------CCC
Confidence 557899999999999999999999977 5666889999999999999999999999999998 488
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q psy597 376 VAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK 431 (546)
Q Consensus 376 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~ 431 (546)
.+.+++++|.++...|++++|+..|++++.+ .|..+..+.++|.+...
T Consensus 91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~--------~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 91 HPEPVYQTGVCLKMMGEPGLAREAFQTAIKM--------SYADASWSEIRQNAQIM 138 (144)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHH
Confidence 8999999999999999999999999999998 77777788888776554
No 78
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.29 E-value=5.2e-10 Score=124.55 Aligned_cols=207 Identities=10% Similarity=0.052 Sum_probs=133.9
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q psy597 293 ATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKE 372 (546)
Q Consensus 293 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 372 (546)
..+|+.+...|...|++++|..+|.+...... +-.|. ..+|..+...|.+.|++++|..+|+++.+..
T Consensus 542 ~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~----gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~g------- 609 (1060)
T PLN03218 542 RVVFNALISACGQSGAVDRAFDVLAEMKAETH----PIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEYN------- 609 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcC----CCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-------
Confidence 34566667777777777777777776654210 11222 3466677777777777777777777765541
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhc
Q psy597 373 HPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 452 (546)
Q Consensus 373 ~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~ 452 (546)
.+....+|+.+...|.+.|++++|+..|.+.... +-.|+ ..+|..+...|.+.|++++|..+++++.+....
T Consensus 610 i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~------Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~- 681 (1060)
T PLN03218 610 IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK------GVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQGIK- 681 (1060)
T ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-
Confidence 1234556777777777777777777777776653 22333 456777777888888888888888777653211
Q ss_pred ccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 453 EFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 528 (546)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~ 528 (546)
.....++.++..+...|+.++|...|.+.... +-.| ...+|..+...|.+.|++++|..+|++....
T Consensus 682 --pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~------g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~ 748 (1060)
T PLN03218 682 --LGTVSYSSLMGACSNAKNWKKALELYEDIKSI------KLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRL 748 (1060)
T ss_pred --CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 11223444555577778888887777765432 1123 3457888888899999999999988887653
No 79
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.29 E-value=7.7e-11 Score=128.90 Aligned_cols=270 Identities=13% Similarity=0.056 Sum_probs=179.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHH
Q psy597 214 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVA 293 (546)
Q Consensus 214 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 293 (546)
+..+|..+...|...|++++|+.+|.+....--. ...........+.........+..... .+.+. ..+...
T Consensus 289 ~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~---pd~~t~~~ll~a~~~~g~~~~a~~i~~---~m~~~--g~~~d~ 360 (697)
T PLN03081 289 TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS---IDQFTFSIMIRIFSRLALLEHAKQAHA---GLIRT--GFPLDI 360 (697)
T ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHhccchHHHHHHHH---HHHHh--CCCCCe
Confidence 4567778888888888888888888776542100 000001111111111111111111111 11111 123334
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q psy597 294 TMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEH 373 (546)
Q Consensus 294 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 373 (546)
.++..+...|.+.|++++|...|++... + ...+|+.+...|...|+.++|+.+|+++... +-.
T Consensus 361 ~~~~~Li~~y~k~G~~~~A~~vf~~m~~-------~----d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~------g~~ 423 (697)
T PLN03081 361 VANTALVDLYSKWGRMEDARNVFDRMPR-------K----NLISWNALIAGYGNHGRGTKAVEMFERMIAE------GVA 423 (697)
T ss_pred eehHHHHHHHHHCCCHHHHHHHHHhCCC-------C----CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCC
Confidence 5678888999999999999999987642 1 1457899999999999999999999998764 222
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcc
Q psy597 374 PDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHERE 453 (546)
Q Consensus 374 ~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~ 453 (546)
|+ ..++..+...+...|+.++|..+|+...+.+ +-.| ....|..+..+|.+.|++++|.+++++.- ..
T Consensus 424 Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~-----g~~p-~~~~y~~li~~l~r~G~~~eA~~~~~~~~----~~- 491 (697)
T PLN03081 424 PN-HVTFLAVLSACRYSGLSEQGWEIFQSMSENH-----RIKP-RAMHYACMIELLGREGLLDEAYAMIRRAP----FK- 491 (697)
T ss_pred CC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc-----CCCC-CccchHhHHHHHHhcCCHHHHHHHHHHCC----CC-
Confidence 43 5567888888999999999999999887641 1122 34568889999999999999999886531 11
Q ss_pred cCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q psy597 454 FGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRA 529 (546)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~ 529 (546)
.....+..+...+...|+.+.|...+++.+.+ .|.....|..++.+|...|++++|.+.++...+..
T Consensus 492 -p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--------~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 492 -PTVNMWAALLTACRIHKNLELGRLAAEKLYGM--------GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKG 558 (697)
T ss_pred -CCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--------CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 11122334444577788888888877776644 55556788899999999999999999999877653
No 80
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.27 E-value=1.1e-09 Score=118.66 Aligned_cols=204 Identities=13% Similarity=0.083 Sum_probs=143.2
Q ss_pred hcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccC
Q psy597 206 NAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSG 285 (546)
Q Consensus 206 ~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~ 285 (546)
......|..+...+..+.+.++.|+++.|+..|+++++..+....... .+... .........+.......
T Consensus 25 ~~~~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~---dll~l-~~~~G~~~~A~~~~eka------ 94 (822)
T PRK14574 25 SGFVVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD---DWLQI-AGWAGRDQEVIDVYERY------ 94 (822)
T ss_pred cccccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH---HHHHH-HHHcCCcHHHHHHHHHh------
Confidence 344556777889999999999999999999999999987666431111 11110 11112222222222211
Q ss_pred CCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy597 286 GHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 365 (546)
Q Consensus 286 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 365 (546)
....+.....+..+|.+|...|++++|++.|+++++.. |....++..++.+|...+++++|+..++++....
T Consensus 95 ~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d--------P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d 166 (822)
T PRK14574 95 QSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKD--------PTNPDLISGMIMTQADAGRGGVVLKQATELAERD 166 (822)
T ss_pred ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC
Confidence 22234445556666889999999999999999999873 4446667788999999999999999999988773
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy597 366 EKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQ 444 (546)
Q Consensus 366 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~ 444 (546)
|.... +..++.++...++..+|+..|+++++. .|.....+..+..++...|-...|.++.++
T Consensus 167 --------p~~~~-~l~layL~~~~~~~~~AL~~~ekll~~--------~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~ 228 (822)
T PRK14574 167 --------PTVQN-YMTLSYLNRATDRNYDALQASSEAVRL--------APTSEEVLKNHLEILQRNRIVEPALRLAKE 228 (822)
T ss_pred --------cchHH-HHHHHHHHHhcchHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHh
Confidence 44333 355566666678887799999999998 777777888888888888877777766553
No 81
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.26 E-value=3.2e-10 Score=120.61 Aligned_cols=133 Identities=12% Similarity=0.046 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q psy597 294 TMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEH 373 (546)
Q Consensus 294 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 373 (546)
.++..+-.+....+....+...+-+++...+. .+..+.++.+||.+....|.+++|+.+++.++++.
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-------- 116 (694)
T PRK15179 50 ELLQQARQVLERHAAVHKPAAALPELLDYVRR-----YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-------- 116 (694)
T ss_pred HHHHHHHHHHHHhhhhcchHhhHHHHHHHHHh-----ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC--------
Confidence 34444445555566666666666666666644 35557788888888888888888888888888885
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 374 PDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 447 (546)
Q Consensus 374 ~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~ 447 (546)
|+...+..+++.++.+.+++++|+..+++++.. .|+.+.+++.+|.++...|++++|+.+|++++.
T Consensus 117 Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--------~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~ 182 (694)
T PRK15179 117 PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--------GSSSAREILLEAKSWDEIGQSEQADACFERLSR 182 (694)
T ss_pred CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 888888888888888888888888888888887 788888888888888888888888888888886
No 82
>PLN02789 farnesyltranstransferase
Probab=99.24 E-value=5.9e-10 Score=108.22 Aligned_cols=206 Identities=11% Similarity=0.123 Sum_probs=165.6
Q ss_pred ChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHH
Q psy597 289 HPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRG-KYKEAEPLCKRALEIREK 367 (546)
Q Consensus 289 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~ 367 (546)
.+....++..+-.++...+++++|+..+.+++.+ .|....+|+..+.++..+| ++++++.++.+++..
T Consensus 33 ~~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~l--------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--- 101 (320)
T PLN02789 33 TPEFREAMDYFRAVYASDERSPRALDLTADVIRL--------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--- 101 (320)
T ss_pred CHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH---
Confidence 4566677766677788889999999999999988 5666889999999999999 689999999999988
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy597 368 VLGKEHPDVAKQLNNLALLCQNQSKY--EEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQV 445 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~~~g~~--~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~a 445 (546)
+|....+|+..+.++...|+. ++++.++.+++++ +|....+|...+.++...|++++|+.++.++
T Consensus 102 -----npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~--------dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~ 168 (320)
T PLN02789 102 -----NPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL--------DAKNYHAWSHRQWVLRTLGGWEDELEYCHQL 168 (320)
T ss_pred -----CCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 488888999999999999874 7889999999998 8999999999999999999999999999999
Q ss_pred HHhhhhcccCcccCCChhhHHHHhh---chh----hHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH----cCC
Q psy597 446 LTRAHEREFGACDGDNKPIWQDRQK---NKA----KNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK----QGK 514 (546)
Q Consensus 446 l~~~~~~~~~~~~~~~~~~~~~~~~---~~~----~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~----~g~ 514 (546)
++..+.+. .+.+..+++.... +.. +.++.+..+++.. .|....++..++.++.. .++
T Consensus 169 I~~d~~N~----sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~--------~P~N~SaW~Yl~~ll~~~~~~l~~ 236 (320)
T PLN02789 169 LEEDVRNN----SAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA--------NPRNESPWRYLRGLFKDDKEALVS 236 (320)
T ss_pred HHHCCCch----hHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh--------CCCCcCHHHHHHHHHhcCCccccc
Confidence 99754432 2233333333222 222 3566677788776 78888999999999988 456
Q ss_pred HHHHHHHHHHHHHHhh
Q psy597 515 YKEAEILYKQVLTRAH 530 (546)
Q Consensus 515 ~~~A~~~~~~al~~~~ 530 (546)
..+|...+.+++...+
T Consensus 237 ~~~~~~~~~~~~~~~~ 252 (320)
T PLN02789 237 DPEVSSVCLEVLSKDS 252 (320)
T ss_pred chhHHHHHHHhhcccC
Confidence 6778888888777443
No 83
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.24 E-value=4.1e-10 Score=102.07 Aligned_cols=123 Identities=23% Similarity=0.253 Sum_probs=109.6
Q ss_pred hhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q psy597 306 QNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLAL 385 (546)
Q Consensus 306 ~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 385 (546)
.++.++++..+++++.. .|.....|..+|.+|...|++++|+..|++++.+. |....++.++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~--------~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~--------P~~~~~~~~lA~ 115 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--------NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR--------GENAELYAALAT 115 (198)
T ss_pred chhHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHH
Confidence 56778889999999887 45568899999999999999999999999999984 888899999999
Q ss_pred HH-HHcCC--HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhc
Q psy597 386 LC-QNQSK--YEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 452 (546)
Q Consensus 386 ~~-~~~g~--~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~ 452 (546)
++ ...|+ +++|...++++++. +|....++.++|.++...|++++|+.+++++++..+.+
T Consensus 116 aL~~~~g~~~~~~A~~~l~~al~~--------dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 116 VLYYQAGQHMTPQTREMIDKALAL--------DANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHh--------CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 75 67787 59999999999998 88889999999999999999999999999999986653
No 84
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.24 E-value=2.6e-10 Score=102.74 Aligned_cols=175 Identities=21% Similarity=0.221 Sum_probs=149.9
Q ss_pred HHhhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHH
Q psy597 202 AQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQI 281 (546)
Q Consensus 202 ~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~ 281 (546)
..........|.+..+ .+++..+...|+-+.+..+..++..
T Consensus 54 ~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~-------------------------------------- 94 (257)
T COG5010 54 AALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAI-------------------------------------- 94 (257)
T ss_pred HHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhc--------------------------------------
Confidence 3344445667777778 8888999999998888888877654
Q ss_pred hccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy597 282 LGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRA 361 (546)
Q Consensus 282 l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 361 (546)
.++.....+..+|......|+|..|+..+.++..+ .|....+|+.+|.+|.+.|+++.|..-|.++
T Consensus 95 ------~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l--------~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qA 160 (257)
T COG5010 95 ------AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL--------APTDWEAWNLLGAALDQLGRFDEARRAYRQA 160 (257)
T ss_pred ------cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc--------CCCChhhhhHHHHHHHHccChhHHHHHHHHH
Confidence 45666667777999999999999999999999987 4555889999999999999999999999999
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHH
Q psy597 362 LEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEIL 441 (546)
Q Consensus 362 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~ 441 (546)
+++. +....+.+|+|..+.-.|+++.|..++..+... .+....+..||+.+...+|++++|...
T Consensus 161 l~L~--------~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~--------~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 161 LELA--------PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS--------PAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred HHhc--------cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC--------CCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 9996 777888999999999999999999999999876 555777899999999999999999977
Q ss_pred HHHH
Q psy597 442 YKQV 445 (546)
Q Consensus 442 ~~~a 445 (546)
..+-
T Consensus 225 ~~~e 228 (257)
T COG5010 225 AVQE 228 (257)
T ss_pred cccc
Confidence 6543
No 85
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.23 E-value=5.2e-10 Score=101.39 Aligned_cols=122 Identities=19% Similarity=0.218 Sum_probs=108.7
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q psy597 348 RGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLAS 427 (546)
Q Consensus 348 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~ 427 (546)
.++.++++..+++++.. +|.....|..+|.+|...|++++|+..|++++.+ .|....++.++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~--------~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--------~P~~~~~~~~lA~ 115 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--------NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL--------RGENAELYAALAT 115 (198)
T ss_pred chhHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Confidence 67789999999999988 4888999999999999999999999999999999 8888999999999
Q ss_pred HH-HHcCC--HHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q psy597 428 CY-LKQGK--YKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNN 504 (546)
Q Consensus 428 ~y-~~~g~--~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~ 504 (546)
++ ...|+ +++|...+++++.. +|....++..
T Consensus 116 aL~~~~g~~~~~~A~~~l~~al~~----------------------------------------------dP~~~~al~~ 149 (198)
T PRK10370 116 VLYYQAGQHMTPQTREMIDKALAL----------------------------------------------DANEVTALML 149 (198)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHh----------------------------------------------CCCChhHHHH
Confidence 74 67787 59999999999886 5667788999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhhh
Q psy597 505 LASCYLKQGKYKEAEILYKQVLTRAHE 531 (546)
Q Consensus 505 La~~y~~~g~~~~A~~~~~~al~~~~~ 531 (546)
+|..+...|++++|+.+++++++..|.
T Consensus 150 LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 150 LASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 999999999999999999999998764
No 86
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.23 E-value=5.4e-10 Score=118.95 Aligned_cols=138 Identities=8% Similarity=0.026 Sum_probs=123.8
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
+.+..+.++..||.+....|.+++|...++.++++ .|....+..+++.++.+.+++++|+..+++++..
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--------~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--- 149 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--------FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--- 149 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc---
Confidence 45777889999999999999999999999999988 4666888999999999999999999999999988
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 368 VLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 447 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~ 447 (546)
.|+.+..++.+|.++...|++++|+.+|++++.- +|....++..+|.++...|+.++|...|+++++
T Consensus 150 -----~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~--------~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 150 -----GSSSAREILLEAKSWDEIGQSEQADACFERLSRQ--------HPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred -----CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4888999999999999999999999999999885 777888999999999999999999999999988
Q ss_pred hh
Q psy597 448 RA 449 (546)
Q Consensus 448 ~~ 449 (546)
..
T Consensus 217 ~~ 218 (694)
T PRK15179 217 AI 218 (694)
T ss_pred hh
Confidence 64
No 87
>KOG0548|consensus
Probab=99.22 E-value=1.1e-09 Score=107.65 Aligned_cols=186 Identities=22% Similarity=0.279 Sum_probs=152.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhH
Q psy597 213 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDV 292 (546)
Q Consensus 213 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 292 (546)
..+..+.+.+.+|+..|.+.+++..+..+++......- +....
T Consensus 255 ~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~ra-------------------------------------d~klI 297 (539)
T KOG0548|consen 255 TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRA-------------------------------------DYKLI 297 (539)
T ss_pred hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHH-------------------------------------HHHHH
Confidence 66677888999999999999999999888774332210 11224
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH--hcC----------------CCCHHHHHHHHHHHHHHHHcCCHHHH
Q psy597 293 ATMLNILALVYRDQNKYKEAANLLNDALTIREK--TLG----------------ENHAAVAATLNNLAVLYGKRGKYKEA 354 (546)
Q Consensus 293 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~~g----------------~~~~~~~~~~~~la~~~~~~g~~~~A 354 (546)
+.++..+|..|...++++.|+.+|.+++.-.+. ... --.|..+.-...-|..++..|+|..|
T Consensus 298 ak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~A 377 (539)
T KOG0548|consen 298 AKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEA 377 (539)
T ss_pred HHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHH
Confidence 555666888888899999999999998876543 100 01344455566779999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCC
Q psy597 355 EPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGK 434 (546)
Q Consensus 355 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~ 434 (546)
+.+|.+|+.. .|..+..|.|.|.||..+|.+..|+...+.++++ +|.....|..-|.++..+.+
T Consensus 378 v~~YteAIkr--------~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--------~p~~~kgy~RKg~al~~mk~ 441 (539)
T KOG0548|consen 378 VKHYTEAIKR--------DPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--------DPNFIKAYLRKGAALRAMKE 441 (539)
T ss_pred HHHHHHHHhc--------CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------CchHHHHHHHHHHHHHHHHH
Confidence 9999999987 4999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhh
Q psy597 435 YKEAEILYKQVLTRAHE 451 (546)
Q Consensus 435 ~~eA~~~~~~al~~~~~ 451 (546)
|++|++.|.+++...+.
T Consensus 442 ydkAleay~eale~dp~ 458 (539)
T KOG0548|consen 442 YDKALEAYQEALELDPS 458 (539)
T ss_pred HHHHHHHHHHHHhcCch
Confidence 99999999999997543
No 88
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.21 E-value=1.3e-10 Score=88.59 Aligned_cols=77 Identities=45% Similarity=0.728 Sum_probs=70.6
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy597 331 HAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYE 408 (546)
Q Consensus 331 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~ 408 (546)
||..+.++.++|.+|...|+|++|+.+|++++++ .+..|++++..+.++.++|.++...|++++|+.++++++++++
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 5778999999999999999999999999999999 6667777888999999999999999999999999999999865
No 89
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.20 E-value=1.3e-09 Score=116.78 Aligned_cols=250 Identities=18% Similarity=0.232 Sum_probs=167.3
Q ss_pred cCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCC
Q psy597 207 AGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGG 286 (546)
Q Consensus 207 ~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 286 (546)
.+.-.|.+..++..++..|...+++++|+..+..+++
T Consensus 23 ~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~------------------------------------------- 59 (906)
T PRK14720 23 ANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLK------------------------------------------- 59 (906)
T ss_pred cccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------------------------------------------
Confidence 3455688999999999999999999999999998887
Q ss_pred CCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcC-----------CCCHHHHHHHHHHHHHHHHcCCHHHHH
Q psy597 287 HDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLG-----------ENHAAVAATLNNLAVLYGKRGKYKEAE 355 (546)
Q Consensus 287 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g-----------~~~~~~~~~~~~la~~~~~~g~~~~A~ 355 (546)
.+|.....++.+|.++...+++.+|... .++.+...... .+.+..-.+++.+|.||-.+|++++|.
T Consensus 60 -~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~ 136 (906)
T PRK14720 60 -EHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLK 136 (906)
T ss_pred -hCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHH
Confidence 4677788888889988888888877766 55555432200 112233368889999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCH
Q psy597 356 PLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKY 435 (546)
Q Consensus 356 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~ 435 (546)
..|++++++ +|..+.+++++|..|... ++++|+.++.+|+..+-.. .........|.. .|...--++
T Consensus 137 ~~yer~L~~--------D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~--kq~~~~~e~W~k--~~~~~~~d~ 203 (906)
T PRK14720 137 GVWERLVKA--------DRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKK--KQYVGIEEIWSK--LVHYNSDDF 203 (906)
T ss_pred HHHHHHHhc--------CcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhh--hcchHHHHHHHH--HHhcCcccc
Confidence 999999998 488899999999999999 9999999999998874322 001111111111 112222222
Q ss_pred HHHHHHHHHHHHhhhhcccCcccCCChhhHH-HHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCC
Q psy597 436 KEAEILYKQVLTRAHEREFGACDGDNKPIWQ-DRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGK 514 (546)
Q Consensus 436 ~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~ 514 (546)
+.=..+.++++.. ..++.........|. |...++++++...+..++++ .|....+...++.+|. +.
T Consensus 204 d~f~~i~~ki~~~---~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~--------~~~n~~a~~~l~~~y~--~k 270 (906)
T PRK14720 204 DFFLRIERKVLGH---REFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEH--------DNKNNKAREELIRFYK--EK 270 (906)
T ss_pred hHHHHHHHHHHhh---hccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhc--------CCcchhhHHHHHHHHH--HH
Confidence 2222222222221 112222222333333 55667788888888888776 6667777888888887 44
Q ss_pred HHHHHHHHHHHHHHh
Q psy597 515 YKEAEILYKQVLTRA 529 (546)
Q Consensus 515 ~~~A~~~~~~al~~~ 529 (546)
|.. ...|+.++++.
T Consensus 271 Y~~-~~~~ee~l~~s 284 (906)
T PRK14720 271 YKD-HSLLEDYLKMS 284 (906)
T ss_pred ccC-cchHHHHHHHh
Confidence 444 55555555543
No 90
>KOG0550|consensus
Probab=99.20 E-value=7.4e-10 Score=105.28 Aligned_cols=183 Identities=22% Similarity=0.174 Sum_probs=156.7
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChh
Q psy597 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPD 291 (546)
Q Consensus 212 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (546)
|.-...-..-+.|+...|++++|...--..++ .++.
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilk--------------------------------------------ld~~ 201 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILK--------------------------------------------LDAT 201 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHh--------------------------------------------cccc
Confidence 66667778888999999999999988877776 4577
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLG----ENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
...+++..|.+++..++.+.|+.+|++++.+.+.... -..+.....+..-|.-.++.|+|..|.++|..+|.+...
T Consensus 202 n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~ 281 (486)
T KOG0550|consen 202 NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS 281 (486)
T ss_pred hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc
Confidence 7888999999999999999999999999998543310 013445566777899999999999999999999998522
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 368 VLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 447 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~ 447 (546)
+....+..|.+.|.+...+|+..+|+.-...|+.+ ++....++...|.|+..+++|++|.+.|+++++
T Consensus 282 ----n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--------D~syikall~ra~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 282 ----NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--------DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred ----ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 23456888999999999999999999999999999 999999999999999999999999999999998
Q ss_pred hhh
Q psy597 448 RAH 450 (546)
Q Consensus 448 ~~~ 450 (546)
...
T Consensus 350 ~~~ 352 (486)
T KOG0550|consen 350 LEK 352 (486)
T ss_pred hcc
Confidence 643
No 91
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.19 E-value=1.4e-09 Score=118.99 Aligned_cols=196 Identities=12% Similarity=0.058 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q psy597 295 MLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHP 374 (546)
Q Consensus 295 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 374 (546)
+|+.+...|...|++++|+.+|++.... +-.|. ..++..+...+...|++++|...+..+++.. .+
T Consensus 292 t~n~li~~y~~~g~~~eA~~lf~~M~~~------g~~pd-~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g-------~~ 357 (697)
T PLN03081 292 AWNSMLAGYALHGYSEEALCLYYEMRDS------GVSID-QFTFSIMIRIFSRLALLEHAKQAHAGLIRTG-------FP 357 (697)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHHhccchHHHHHHHHHHHHhC-------CC
Confidence 3444444455555555555544444321 11111 2244444444555555555555544444331 12
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhccc
Q psy597 375 DVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREF 454 (546)
Q Consensus 375 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~ 454 (546)
....+++.+...|.+.|++++|...|++..+ + ...+|+.+...|.+.|+.++|+++|++........
T Consensus 358 ~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----------~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~P-- 424 (697)
T PLN03081 358 LDIVANTALVDLYSKWGRMEDARNVFDRMPR----------K-NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAP-- 424 (697)
T ss_pred CCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----------C-CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--
Confidence 2233445555555555555555555544321 1 22345556666666666666666666555421110
Q ss_pred CcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy597 455 GACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQ 524 (546)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~ 524 (546)
...........+...|..++|...|....+.+ +-.| ....|..+..+|.+.|++++|.+.+++
T Consensus 425 -d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~-----g~~p-~~~~y~~li~~l~r~G~~~eA~~~~~~ 487 (697)
T PLN03081 425 -NHVTFLAVLSACRYSGLSEQGWEIFQSMSENH-----RIKP-RAMHYACMIELLGREGLLDEAYAMIRR 487 (697)
T ss_pred -CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc-----CCCC-CccchHhHHHHHHhcCCHHHHHHHHHH
Confidence 01112222223445555555555555443220 1112 234566667777777777777666554
No 92
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.19 E-value=9.7e-09 Score=111.53 Aligned_cols=311 Identities=12% Similarity=0.074 Sum_probs=190.1
Q ss_pred ChhhHHHhhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHH
Q psy597 197 PPSQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQA 276 (546)
Q Consensus 197 ~~~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~ 276 (546)
...+.....+.....|.....+..+|..|...|+|++|+..|+++++..+....-+ ...........+...+...+
T Consensus 84 ~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l----~gLa~~y~~~~q~~eAl~~l 159 (822)
T PRK14574 84 DQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLI----SGMIMTQADAGRGGVVLKQA 159 (822)
T ss_pred cHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH----HHHHHHHhhcCCHHHHHHHH
Confidence 34455555555544455566677778899999999999999999998755542111 11111112222222222222
Q ss_pred HHHHHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Q psy597 277 KVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEP 356 (546)
Q Consensus 277 ~~~~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~ 356 (546)
..+ ....|.... +..++.++...+++.+|+..++++++. .|....++..+..++...|-...|.+
T Consensus 160 ~~l------~~~dp~~~~-~l~layL~~~~~~~~~AL~~~ekll~~--------~P~n~e~~~~~~~~l~~~~~~~~a~~ 224 (822)
T PRK14574 160 TEL------AERDPTVQN-YMTLSYLNRATDRNYDALQASSEAVRL--------APTSEEVLKNHLEILQRNRIVEPALR 224 (822)
T ss_pred HHh------cccCcchHH-HHHHHHHHHhcchHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCcHHHHH
Confidence 222 223344332 244455555566776688888888877 45556677778888888888888887
Q ss_pred HHHHHHHHHH--------------Hh---------------------------c---CCC---ChHHHHHHHHHHHHHHH
Q psy597 357 LCKRALEIRE--------------KV---------------------------L---GKE---HPDVAKQLNNLALLCQN 389 (546)
Q Consensus 357 ~~~~al~~~~--------------~~---------------------------~---~~~---~~~~~~~~~~la~~~~~ 389 (546)
...+--..+. .+ . +.. ++....+..-.-.++..
T Consensus 225 l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~ 304 (822)
T PRK14574 225 LAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLV 304 (822)
T ss_pred HHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHH
Confidence 7776442210 00 0 000 11112222233334455
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccC--CChhhHHH
Q psy597 390 QSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDG--DNKPIWQD 467 (546)
Q Consensus 390 ~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~--~~~~~~~~ 467 (546)
.|++.+++..|+..... ..+.-..+....|..|+..+++++|+.+|++++.-.++........ ...+.+.+
T Consensus 305 r~r~~~vi~~y~~l~~~-------~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ 377 (822)
T PRK14574 305 RHQTADLIKEYEAMEAE-------GYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSL 377 (822)
T ss_pred hhhHHHHHHHHHHhhhc-------CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHH
Confidence 66666666666554432 1222233677789999999999999999999987543211111111 24567778
Q ss_pred HhhchhhHHHHHHHHHHHHHH---H----HcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhc
Q psy597 468 RQKNKAKNREKYYQRALEIYE---L----KLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHERE 533 (546)
Q Consensus 468 ~~~~~~~~A~~~~~~Al~~~~---~----~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~~~ 533 (546)
...+++++|..++++....-. . .....+|+.......++.++...|++.+|.+.+++.+...|.++
T Consensus 378 ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~ 450 (822)
T PRK14574 378 NESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQ 450 (822)
T ss_pred HhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 999999999999888876211 0 00123566677888888888999999999999999988877654
No 93
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.17 E-value=8.1e-09 Score=94.33 Aligned_cols=170 Identities=21% Similarity=0.267 Sum_probs=135.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHH
Q psy597 214 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVA 293 (546)
Q Consensus 214 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 293 (546)
.+..++..|..++..|+|.+|+..|++.+..+ +..+...
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-----------------------------------------P~s~~a~ 42 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRY-----------------------------------------PNSPYAP 42 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH------------------------------------------TTSTTHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----------------------------------------CCChHHH
Confidence 46789999999999999999999999998863 3677888
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHH
Q psy597 294 TMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRG-----------KYKEAEPLCKRAL 362 (546)
Q Consensus 294 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al 362 (546)
.+.+.+|.+++..|++..|+..+++.+..+ |+++....+++.+|.+++... ...+|+..|+..+
T Consensus 43 ~A~l~la~a~y~~~~y~~A~~~~~~fi~~y-----P~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li 117 (203)
T PF13525_consen 43 QAQLMLAYAYYKQGDYEEAIAAYERFIKLY-----PNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELI 117 (203)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH------TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHH
Confidence 999999999999999999999999999987 667888899999999877653 2357888888888
Q ss_pred HHHHHhcCCCChHHHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q psy597 363 EIREKVLGKEHPDVAK--------------QLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASC 428 (546)
Q Consensus 363 ~~~~~~~~~~~~~~~~--------------~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~ 428 (546)
..+ ++++.... --..+|..|.+.|.|..|+..++.+++.+ |+.+....++..++..
T Consensus 118 ~~y-----P~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~y-----p~t~~~~~al~~l~~~ 187 (203)
T PF13525_consen 118 KRY-----PNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENY-----PDTPAAEEALARLAEA 187 (203)
T ss_dssp HH------TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHH
T ss_pred HHC-----cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHH
Confidence 776 44343322 23456889999999999999999999885 6678888999999999
Q ss_pred HHHcCCHHHHH
Q psy597 429 YLKQGKYKEAE 439 (546)
Q Consensus 429 y~~~g~~~eA~ 439 (546)
|..+|..+.|.
T Consensus 188 y~~l~~~~~a~ 198 (203)
T PF13525_consen 188 YYKLGLKQAAD 198 (203)
T ss_dssp HHHTT-HHHHH
T ss_pred HHHhCChHHHH
Confidence 99999988554
No 94
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.16 E-value=9.4e-09 Score=105.67 Aligned_cols=142 Identities=19% Similarity=0.128 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccC
Q psy597 376 VAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFG 455 (546)
Q Consensus 376 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~ 455 (546)
..++++.+|..|...|++++|+.+.++|++. .|..+..|...|.+|-..|++.+|...++.+-.+...+.
T Consensus 193 ~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--------tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DR-- 262 (517)
T PF12569_consen 193 LLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--------TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADR-- 262 (517)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhH--
Confidence 3678899999999999999999999999998 899999999999999999999999999999988755443
Q ss_pred cccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcC-C-CC---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q psy597 456 ACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLG-P-DD---SNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAH 530 (546)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~-~-~~---~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~ 530 (546)
...+..+....+.|+.++|...+..- .+... + .+ -...+.....|.+|.+.|++..|++.|..+.+.+.
T Consensus 263 --yiNsK~aKy~LRa~~~e~A~~~~~~F----tr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~ 336 (517)
T PF12569_consen 263 --YINSKCAKYLLRAGRIEEAEKTASLF----TREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFD 336 (517)
T ss_pred --HHHHHHHHHHHHCCCHHHHHHHHHhh----cCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 22334455577778888776654432 21110 0 01 12345556789999999999999999999999886
Q ss_pred hhc
Q psy597 531 ERE 533 (546)
Q Consensus 531 ~~~ 533 (546)
+..
T Consensus 337 ~~~ 339 (517)
T PF12569_consen 337 DFE 339 (517)
T ss_pred HHh
Confidence 643
No 95
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.16 E-value=2.9e-10 Score=86.61 Aligned_cols=78 Identities=46% Similarity=0.684 Sum_probs=70.8
Q ss_pred ChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 289 HPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 289 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
||..+.++.++|.+|...|+|++|+.+|++++++ .+..|++++..+.++.++|.++...|++++|+.++++++++.++
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK 78 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence 5788999999999999999999999999999999 66667778889999999999999999999999999999998753
No 96
>KOG1174|consensus
Probab=99.13 E-value=2e-09 Score=102.33 Aligned_cols=267 Identities=15% Similarity=0.122 Sum_probs=193.7
Q ss_pred CCChhhHHHhhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHH
Q psy597 195 PTPPSQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVK 274 (546)
Q Consensus 195 ~~~~~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~ 274 (546)
+....+...+.+...-+|..+...-..|..+...|+++.-..+-...+.....+...+--+. ..+-...+...+..
T Consensus 246 Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~----~~l~~~K~~~rAL~ 321 (564)
T KOG1174|consen 246 GDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHA----QLLYDEKKFERALN 321 (564)
T ss_pred cCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhh----hhhhhhhhHHHHHH
Confidence 33455666777777888999999999999999999999877766666554332221111000 00000111111111
Q ss_pred HHHHHHHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHH
Q psy597 275 QAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEA 354 (546)
Q Consensus 275 ~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A 354 (546)
... +.....+....++...|.++...|+..+|+-.|+.|..+. |...++|..|-.+|...|++.+|
T Consensus 322 ~~e------K~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La--------p~rL~~Y~GL~hsYLA~~~~kEA 387 (564)
T KOG1174|consen 322 FVE------KCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA--------PYRLEIYRGLFHSYLAQKRFKEA 387 (564)
T ss_pred HHH------HHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc--------hhhHHHHHHHHHHHHhhchHHHH
Confidence 111 1123456677889999999999999999999999999884 66689999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCChHHHHHHHHHH-HHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc
Q psy597 355 EPLCKRALEIREKVLGKEHPDVAKQLNNLA-LLCQN-QSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ 432 (546)
Q Consensus 355 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la-~~~~~-~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~ 432 (546)
.-..+.++... |..+.++..+| .++.. -.--++|..++++++.+ .|....+...+|.++...
T Consensus 388 ~~~An~~~~~~--------~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--------~P~Y~~AV~~~AEL~~~E 451 (564)
T KOG1174|consen 388 NALANWTIRLF--------QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--------NPIYTPAVNLIAELCQVE 451 (564)
T ss_pred HHHHHHHHHHh--------hcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--------CCccHHHHHHHHHHHHhh
Confidence 99999999987 77788888886 55443 33458899999999998 899999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q psy597 433 GKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASC 508 (546)
Q Consensus 433 g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~ 508 (546)
|++.+++.++++.+...++. .....++......+.+.+|..+|..|+.+ +|..-.++..+-.+
T Consensus 452 g~~~D~i~LLe~~L~~~~D~-----~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~--------dP~~~~sl~Gl~~l 514 (564)
T KOG1174|consen 452 GPTKDIIKLLEKHLIIFPDV-----NLHNHLGDIMRAQNEPQKAMEYYYKALRQ--------DPKSKRTLRGLRLL 514 (564)
T ss_pred CccchHHHHHHHHHhhcccc-----HHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------CccchHHHHHHHHH
Confidence 99999999999999875543 33445555666666777777777777665 66666665555444
No 97
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.13 E-value=1.4e-08 Score=92.81 Aligned_cols=170 Identities=26% Similarity=0.356 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 371 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 371 (546)
.+..++..|..++..|+|.+|+..|++.+..+ +.++....+.+.+|.+++..|+++.|+..+++.+... +
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-----P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y-----P 73 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRY-----PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY-----P 73 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH------T
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----C
Confidence 45678999999999999999999999999887 6678889999999999999999999999999999988 7
Q ss_pred CChHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH--------------HHH
Q psy597 372 EHPDVAKQLNNLALLCQNQS-----------KYEEVERYYQRALEIYELKLGPDDSNVAKTKN--------------NLA 426 (546)
Q Consensus 372 ~~~~~~~~~~~la~~~~~~g-----------~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~--------------~La 426 (546)
++|....+++.+|.+++... ...+|+..|+..+..+ |+++....+.. .+|
T Consensus 74 ~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y-----P~S~y~~~A~~~l~~l~~~la~~e~~ia 148 (203)
T PF13525_consen 74 NSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY-----PNSEYAEEAKKRLAELRNRLAEHELYIA 148 (203)
T ss_dssp T-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC-----cCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77889999999999877643 2346777777777664 44444443333 235
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q psy597 427 SCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLA 506 (546)
Q Consensus 427 ~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La 506 (546)
..|.+.|.|..|+..++.+++.. ++.+....++..++
T Consensus 149 ~~Y~~~~~y~aA~~r~~~v~~~y-------------------------------------------p~t~~~~~al~~l~ 185 (203)
T PF13525_consen 149 RFYYKRGKYKAAIIRFQYVIENY-------------------------------------------PDTPAAEEALARLA 185 (203)
T ss_dssp HHHHCTT-HHHHHHHHHHHHHHS-------------------------------------------TTSHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-------------------------------------------CCCchHHHHHHHHH
Confidence 55555555555555555555543 34667778999999
Q ss_pred HHHHHcCCHHHHH
Q psy597 507 SCYLKQGKYKEAE 519 (546)
Q Consensus 507 ~~y~~~g~~~~A~ 519 (546)
..|..+|..+.|.
T Consensus 186 ~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 186 EAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHTT-HHHHH
T ss_pred HHHHHhCChHHHH
Confidence 9999999988554
No 98
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.11 E-value=1.5e-09 Score=97.86 Aligned_cols=136 Identities=20% Similarity=0.254 Sum_probs=116.1
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
..|....+ ..++..+...|+-+.+..+..++... ++.....+..+|......|+|..|+..++++....
T Consensus 62 ~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~--------~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-- 130 (257)
T COG5010 62 RNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIA--------YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-- 130 (257)
T ss_pred cCcchHHH-HHHHHHHHhcccccchHHHHhhhhcc--------CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC--
Confidence 45666666 88899999999999888888886644 33335556668999999999999999999999884
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 368 VLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 447 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~ 447 (546)
|....+++.+|.+|.+.|++++|...|.+++++ .+..+.+.+|+|..|.-.|+++.|..++..+..
T Consensus 131 ------p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L--------~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l 196 (257)
T COG5010 131 ------PTDWEAWNLLGAALDQLGRFDEARRAYRQALEL--------APNEPSIANNLGMSLLLRGDLEDAETLLLPAYL 196 (257)
T ss_pred ------CCChhhhhHHHHHHHHccChhHHHHHHHHHHHh--------ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHh
Confidence 888999999999999999999999999999999 777788899999999999999999999888775
Q ss_pred h
Q psy597 448 R 448 (546)
Q Consensus 448 ~ 448 (546)
.
T Consensus 197 ~ 197 (257)
T COG5010 197 S 197 (257)
T ss_pred C
Confidence 3
No 99
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.11 E-value=2.4e-08 Score=93.47 Aligned_cols=175 Identities=11% Similarity=0.057 Sum_probs=143.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHH
Q psy597 215 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVAT 294 (546)
Q Consensus 215 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 294 (546)
+..++..|..++..|+|++|+..|++++.. .+..+....
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~-----------------------------------------yP~s~~a~~ 70 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNR-----------------------------------------YPFGPYSQQ 70 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----------------------------------------CCCChHHHH
Confidence 456888999999999999999999999885 335577778
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC---------------C---HHHHHH
Q psy597 295 MLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRG---------------K---YKEAEP 356 (546)
Q Consensus 295 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g---------------~---~~~A~~ 356 (546)
+.+.+|.+|+..+++++|+..+++.+... |++|....+++.+|.++...+ + ..+|+.
T Consensus 71 a~l~la~ayy~~~~y~~A~~~~e~fi~~~-----P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~ 145 (243)
T PRK10866 71 VQLDLIYAYYKNADLPLAQAAIDRFIRLN-----PTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFR 145 (243)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----cCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHH
Confidence 88999999999999999999999999997 678888999999998865554 2 246778
Q ss_pred HHHHHHHHHHHhcCCCChHHHHH--------------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Q psy597 357 LCKRALEIREKVLGKEHPDVAKQ--------------LNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTK 422 (546)
Q Consensus 357 ~~~~al~~~~~~~~~~~~~~~~~--------------~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~ 422 (546)
.|++.++.+ ++++....+ -..+|..|.+.|.|..|+.-++.+++-+ |+.+....++
T Consensus 146 ~~~~li~~y-----P~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Y-----p~t~~~~eal 215 (243)
T PRK10866 146 DFSKLVRGY-----PNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDY-----PDTQATRDAL 215 (243)
T ss_pred HHHHHHHHC-----cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHC-----CCCchHHHHH
Confidence 888887775 333332222 3356888999999999999999999875 6678899999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Q psy597 423 NNLASCYLKQGKYKEAEILYKQV 445 (546)
Q Consensus 423 ~~La~~y~~~g~~~eA~~~~~~a 445 (546)
..++..|..+|..++|.......
T Consensus 216 ~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 216 PLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHcCChHHHHHHHHHH
Confidence 99999999999999998876543
No 100
>KOG1156|consensus
Probab=99.11 E-value=1.5e-07 Score=94.67 Aligned_cols=301 Identities=14% Similarity=0.067 Sum_probs=193.6
Q ss_pred hhHHHhhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHH
Q psy597 199 SQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKV 278 (546)
Q Consensus 199 ~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~ 278 (546)
++......+...++....+|+.+|.++....+|++|+.+|+.|+.+-+.+..-+.. ..++...+.............
T Consensus 59 ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrD-lslLQ~QmRd~~~~~~tr~~L-- 135 (700)
T KOG1156|consen 59 EAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRD-LSLLQIQMRDYEGYLETRNQL-- 135 (700)
T ss_pred HHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHH-HHHHHHHHHhhhhHHHHHHHH--
Confidence 34444555566778888999999999999999999999999999864443311111 111111111111111111111
Q ss_pred HHHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q psy597 279 AQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLC 358 (546)
Q Consensus 279 ~~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 358 (546)
....|..-..|...+..+...|++..|....+...........+.......+......+....|.+++|.+.+
T Consensus 136 -------Lql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L 208 (700)
T KOG1156|consen 136 -------LQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHL 208 (700)
T ss_pred -------HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 2245667778999999999999999999999888877653322223344556666777888888888888776
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHH
Q psy597 359 KRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEA 438 (546)
Q Consensus 359 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA 438 (546)
.+--... .+........|.++..++++++|...|...+.. .|+....+..+-.++.+-.+--++
T Consensus 209 ~~~e~~i--------~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--------nPdn~~Yy~~l~~~lgk~~d~~~~ 272 (700)
T KOG1156|consen 209 LDNEKQI--------VDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--------NPDNLDYYEGLEKALGKIKDMLEA 272 (700)
T ss_pred HhhhhHH--------HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--------CchhHHHHHHHHHHHHHHhhhHHH
Confidence 6543322 344555666788999999999999999988887 666666666555555411111222
Q ss_pred H-HHHHHHHHhhhhc----------------------------------------------------------------c
Q psy597 439 E-ILYKQVLTRAHER----------------------------------------------------------------E 453 (546)
Q Consensus 439 ~-~~~~~al~~~~~~----------------------------------------------------------------~ 453 (546)
+ ..|...-+..+.. +
T Consensus 273 lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~ 352 (700)
T KOG1156|consen 273 LKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSG 352 (700)
T ss_pred HHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhccc
Confidence 2 2222111111100 0
Q ss_pred --------cCcccCCChhhHH-------HHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHH
Q psy597 454 --------FGACDGDNKPIWQ-------DRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEA 518 (546)
Q Consensus 454 --------~~~~~~~~~~~~~-------~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A 518 (546)
.+...+.....|. +...|+++.|..+.+.|+.. .|...+.+..-|+++...|++++|
T Consensus 353 ~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--------TPTliEly~~KaRI~kH~G~l~eA 424 (700)
T KOG1156|consen 353 TGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--------TPTLIELYLVKARIFKHAGLLDEA 424 (700)
T ss_pred ccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--------CchHHHHHHHHHHHHHhcCChHHH
Confidence 0111233444554 44567777777777777754 788899999999999999999999
Q ss_pred HHHHHHHHHHhhhhc
Q psy597 519 EILYKQVLTRAHERE 533 (546)
Q Consensus 519 ~~~~~~al~~~~~~~ 533 (546)
..++++|.++...+.
T Consensus 425 a~~l~ea~elD~aDR 439 (700)
T KOG1156|consen 425 AAWLDEAQELDTADR 439 (700)
T ss_pred HHHHHHHHhccchhH
Confidence 999999888765443
No 101
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.11 E-value=1.4e-09 Score=91.79 Aligned_cols=102 Identities=21% Similarity=0.146 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q psy597 332 AAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKL 411 (546)
Q Consensus 332 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~ 411 (546)
+......+.+|..++..|++++|...|+-...+ +|.....|++||.++..+|+|++|+..|.+|+.+
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L----- 98 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI----- 98 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----
Confidence 666788999999999999999999999999988 5999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q psy597 412 GPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRA 449 (546)
Q Consensus 412 ~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~ 449 (546)
+|+.+.++.++|.||+..|+.+.|...|+.++...
T Consensus 99 ---~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 99 ---KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred ---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 88899999999999999999999999999999875
No 102
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.11 E-value=2.7e-09 Score=94.65 Aligned_cols=119 Identities=20% Similarity=0.275 Sum_probs=98.7
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
.....+.+++.+|.++...|++++|+..|.+++.+. ++++..+.++.++|.++...|++++|+.+|++++.+.
T Consensus 30 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-- 102 (168)
T CHL00033 30 SGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-- 102 (168)
T ss_pred chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence 345567889999999999999999999999999884 3445567799999999999999999999999999883
Q ss_pred hcCCCChHHHHHHHHHHHHHH-------HcCCHHHHHHHHHHHHHHHHHhcCCCChHHH
Q psy597 368 VLGKEHPDVAKQLNNLALLCQ-------NQSKYEEVERYYQRALEIYELKLGPDDSNVA 419 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~-------~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~ 419 (546)
|.....+.++|.++. ..|+++.|+..+.+++..+++..+.+++...
T Consensus 103 ------~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~ 155 (168)
T CHL00033 103 ------PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYI 155 (168)
T ss_pred ------cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHH
Confidence 444555666666666 8999999999999999999888776664443
No 103
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.10 E-value=1.2e-09 Score=93.11 Aligned_cols=115 Identities=21% Similarity=0.231 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCH
Q psy597 356 PLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKY 435 (546)
Q Consensus 356 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~ 435 (546)
..+++++.. +|........+|..+...|++++|...+++++.. +|....++.++|.++...|++
T Consensus 4 ~~~~~~l~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~~~~ 67 (135)
T TIGR02552 4 ATLKDLLGL--------DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--------DPYNSRYWLGLAACCQMLKEY 67 (135)
T ss_pred hhHHHHHcC--------ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHH
Confidence 345666665 4777888999999999999999999999999988 777889999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCH
Q psy597 436 KEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKY 515 (546)
Q Consensus 436 ~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~ 515 (546)
++|..++++++.. .|.....++.+|.+|...|++
T Consensus 68 ~~A~~~~~~~~~~----------------------------------------------~p~~~~~~~~la~~~~~~g~~ 101 (135)
T TIGR02552 68 EEAIDAYALAAAL----------------------------------------------DPDDPRPYFHAAECLLALGEP 101 (135)
T ss_pred HHHHHHHHHHHhc----------------------------------------------CCCChHHHHHHHHHHHHcCCH
Confidence 9999999988875 455677888999999999999
Q ss_pred HHHHHHHHHHHHHhhhh
Q psy597 516 KEAEILYKQVLTRAHER 532 (546)
Q Consensus 516 ~~A~~~~~~al~~~~~~ 532 (546)
++|+.+|+++++..|+.
T Consensus 102 ~~A~~~~~~al~~~p~~ 118 (135)
T TIGR02552 102 ESALKALDLAIEICGEN 118 (135)
T ss_pred HHHHHHHHHHHHhcccc
Confidence 99999999999987654
No 104
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.10 E-value=1.2e-09 Score=93.18 Aligned_cols=115 Identities=23% Similarity=0.271 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCH
Q psy597 314 NLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKY 393 (546)
Q Consensus 314 ~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 393 (546)
+.|.+++.. +|........+|..+...|++++|...+++++.. .|....++.++|.++...|++
T Consensus 4 ~~~~~~l~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~~~~ 67 (135)
T TIGR02552 4 ATLKDLLGL--------DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--------DPYNSRYWLGLAACCQMLKEY 67 (135)
T ss_pred hhHHHHHcC--------ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHH
Confidence 345666654 5656788999999999999999999999999887 377889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhc
Q psy597 394 EEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 452 (546)
Q Consensus 394 ~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~ 452 (546)
++|+.++++++.+ +|.....++++|.+|...|++++|+.+|++++...+..
T Consensus 68 ~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 118 (135)
T TIGR02552 68 EEAIDAYALAAAL--------DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGEN 118 (135)
T ss_pred HHHHHHHHHHHhc--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 9999999999998 77788899999999999999999999999999986543
No 105
>KOG0553|consensus
Probab=99.09 E-value=1.5e-09 Score=99.79 Aligned_cols=123 Identities=29% Similarity=0.380 Sum_probs=111.3
Q ss_pred hhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q psy597 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 369 (546)
Q Consensus 290 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 369 (546)
...+.-+-.-|.-+...++|.+|+..|.+||.+ .|..+..|.+.|.+|.++|.|+.|++-++.++.+
T Consensus 78 ~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l--------~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i----- 144 (304)
T KOG0553|consen 78 KALAESLKNEGNKLMKNKDYQEAVDKYTEAIEL--------DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI----- 144 (304)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc-----
Confidence 345677778899999999999999999999998 5666888999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHH
Q psy597 370 GKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYK 436 (546)
Q Consensus 370 ~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~ 436 (546)
+|....+|..||.+|..+|++++|++.|++++++ +|.....+.+|..+-.+++...
T Consensus 145 ---Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLel--------dP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 145 ---DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALEL--------DPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred ---ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhcc--------CCCcHHHHHHHHHHHHHhcCCC
Confidence 5999999999999999999999999999999999 8888888888888877777665
No 106
>KOG0495|consensus
Probab=99.08 E-value=8.5e-08 Score=96.35 Aligned_cols=208 Identities=13% Similarity=0.027 Sum_probs=166.5
Q ss_pred CCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy597 286 GHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 365 (546)
Q Consensus 286 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 365 (546)
+....+.-..|..-+..+...+-++-|...|..+++.+ |..-.+|...+..-..-|..+.-..++++++..+
T Consensus 509 gvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf--------p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~ 580 (913)
T KOG0495|consen 509 GVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF--------PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC 580 (913)
T ss_pred ccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc--------cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 34455666677888888888899999999999999885 3335677777777788888999999999998886
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy597 366 EKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQV 445 (546)
Q Consensus 366 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~a 445 (546)
|.....|...+..++..|+...|...+..|++. .|+....+..-..+.....+++.|..+|.++
T Consensus 581 --------pkae~lwlM~ake~w~agdv~~ar~il~~af~~--------~pnseeiwlaavKle~en~e~eraR~llaka 644 (913)
T KOG0495|consen 581 --------PKAEILWLMYAKEKWKAGDVPAARVILDQAFEA--------NPNSEEIWLAAVKLEFENDELERARDLLAKA 644 (913)
T ss_pred --------CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHh--------CCCcHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 666677778888888899999999999999887 7777788888888888888999999999888
Q ss_pred HHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy597 446 LTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQV 525 (546)
Q Consensus 446 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~a 525 (546)
....+ ....+.........++..++|+..++++++. .|.....|..+|.++..+++.+.|...|...
T Consensus 645 r~~sg-----TeRv~mKs~~~er~ld~~eeA~rllEe~lk~--------fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G 711 (913)
T KOG0495|consen 645 RSISG-----TERVWMKSANLERYLDNVEEALRLLEEALKS--------FPDFHKLWLMLGQIEEQMENIEMAREAYLQG 711 (913)
T ss_pred hccCC-----cchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--------CCchHHHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 77533 2244455555677778888888888888887 5777788889999999999999999998888
Q ss_pred HHHhh
Q psy597 526 LTRAH 530 (546)
Q Consensus 526 l~~~~ 530 (546)
++..|
T Consensus 712 ~k~cP 716 (913)
T KOG0495|consen 712 TKKCP 716 (913)
T ss_pred cccCC
Confidence 87654
No 107
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.08 E-value=2.2e-09 Score=90.59 Aligned_cols=102 Identities=18% Similarity=0.153 Sum_probs=94.0
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcc
Q psy597 374 PDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHERE 453 (546)
Q Consensus 374 ~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~ 453 (546)
+......+.+|..++..|++++|...|+-...+ +|.....|++||.++..+|+|.+|+..|..++.+
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L----- 98 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI----- 98 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----
Confidence 677888999999999999999999999999999 9999999999999999999999999999999886
Q ss_pred cCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q psy597 454 FGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRA 529 (546)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~ 529 (546)
+|+.+..++++|.++...|+.+.|.+.|+.|+...
T Consensus 99 -----------------------------------------~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 99 -----------------------------------------KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred -----------------------------------------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 45667788899999999999999999999999887
No 108
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.08 E-value=5e-08 Score=91.31 Aligned_cols=189 Identities=14% Similarity=0.097 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 371 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 371 (546)
.+..++..|..+...|+|++|+..|++++... +..+....+...+|.+|+..+++++|+..+++.++.. +
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-----P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~-----P 100 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY-----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-----P 100 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----c
Confidence 45668889999999999999999999999876 5667888889999999999999999999999999997 7
Q ss_pred CChHHHHHHHHHHHHHHHcC---------------CH---HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC
Q psy597 372 EHPDVAKQLNNLALLCQNQS---------------KY---EEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQG 433 (546)
Q Consensus 372 ~~~~~~~~~~~la~~~~~~g---------------~~---~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g 433 (546)
++|....+++.+|.++...+ |. .+|+..|++.++.+ |+++....+...+..+..++.
T Consensus 101 ~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y-----P~S~ya~~A~~rl~~l~~~la 175 (243)
T PRK10866 101 THPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY-----PNSQYTTDATKRLVFLKDRLA 175 (243)
T ss_pred CCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC-----cCChhHHHHHHHHHHHHHHHH
Confidence 78999999999998875544 22 35666677666653 444444444333332222111
Q ss_pred CHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcC
Q psy597 434 KYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQG 513 (546)
Q Consensus 434 ~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g 513 (546)
+.+ ...+..|...|.+..|...++..+.-+ ++.+...+++..++..|...|
T Consensus 176 ~~e------------------------~~ia~~Y~~~~~y~AA~~r~~~v~~~Y-----p~t~~~~eal~~l~~ay~~lg 226 (243)
T PRK10866 176 KYE------------------------LSVAEYYTKRGAYVAVVNRVEQMLRDY-----PDTQATRDALPLMENAYRQLQ 226 (243)
T ss_pred HHH------------------------HHHHHHHHHcCchHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHcC
Confidence 111 011222333444444444444444433 446778899999999999999
Q ss_pred CHHHHHHHHHH
Q psy597 514 KYKEAEILYKQ 524 (546)
Q Consensus 514 ~~~~A~~~~~~ 524 (546)
..++|......
T Consensus 227 ~~~~a~~~~~~ 237 (243)
T PRK10866 227 LNAQADKVAKI 237 (243)
T ss_pred ChHHHHHHHHH
Confidence 99999887653
No 109
>PLN03077 Protein ECB2; Provisional
Probab=99.08 E-value=1.1e-08 Score=114.84 Aligned_cols=196 Identities=20% Similarity=0.151 Sum_probs=147.1
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q psy597 295 MLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHP 374 (546)
Q Consensus 295 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 374 (546)
+++.+-..|.+.|++++|...|+.. . + ...+|+.+...|...|+.++|+.+|++..+. +-.|
T Consensus 526 ~~naLi~~y~k~G~~~~A~~~f~~~-~-------~----d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~------g~~P 587 (857)
T PLN03077 526 LPNALLDLYVRCGRMNYAWNQFNSH-E-------K----DVVSWNILLTGYVAHGKGSMAVELFNRMVES------GVNP 587 (857)
T ss_pred echHHHHHHHHcCCHHHHHHHHHhc-C-------C----ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCC
Confidence 4456678899999999999888775 1 1 1557999999999999999999999998764 2224
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhccc
Q psy597 375 DVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREF 454 (546)
Q Consensus 375 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~ 454 (546)
+ ..++..+-..|...|++++|..+|+...+.+ +-.| ....|..+..+|.+.|++++|.+++++.- ..|
T Consensus 588 d-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~-----gi~P-~~~~y~~lv~~l~r~G~~~eA~~~~~~m~-~~p---- 655 (857)
T PLN03077 588 D-EVTFISLLCACSRSGMVTQGLEYFHSMEEKY-----SITP-NLKHYACVVDLLGRAGKLTEAYNFINKMP-ITP---- 655 (857)
T ss_pred C-cccHHHHHHHHhhcChHHHHHHHHHHHHHHh-----CCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHCC-CCC----
Confidence 3 4456666678999999999999999987442 2233 34688999999999999999999988752 111
Q ss_pred CcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q psy597 455 GACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRA 529 (546)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~ 529 (546)
....+..+...+...++.+.+....++.+++ .|.....|..++.+|...|++++|.+..+...+..
T Consensus 656 -d~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l--------~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g 721 (857)
T PLN03077 656 -DPAVWGALLNACRIHRHVELGELAAQHIFEL--------DPNSVGYYILLCNLYADAGKWDEVARVRKTMRENG 721 (857)
T ss_pred -CHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--------CCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcC
Confidence 1122233333456667777777777777665 67777889999999999999999999888776543
No 110
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.08 E-value=4.4e-09 Score=112.89 Aligned_cols=225 Identities=14% Similarity=0.147 Sum_probs=161.4
Q ss_pred CCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy597 286 GHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 365 (546)
Q Consensus 286 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 365 (546)
+.-.|....++..|...|...+++++|+..++.+++. +|.....++.+|.++...+++.+|... .++...
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--------~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~ 93 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--------HKKSISALYISGILSLSRRPLNDSNLL--NLIDSF 93 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCcceehHHHHHHHHHhhcchhhhhhh--hhhhhc
Confidence 4567888999999999999999999999999988877 566788999999999999999888877 555554
Q ss_pred HHhc-----------CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCC
Q psy597 366 EKVL-----------GKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGK 434 (546)
Q Consensus 366 ~~~~-----------~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~ 434 (546)
.... -.+.+..-.++..+|.||..+|++++|...|++++++ +|..+.+++++|..|... +
T Consensus 94 ~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~--------D~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 94 SQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA--------DRDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred ccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHh-h
Confidence 2110 0112334468999999999999999999999999999 899999999999999999 9
Q ss_pred HHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCC
Q psy597 435 YKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGK 514 (546)
Q Consensus 435 ~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~ 514 (546)
.++|+.++.+++...-.... .......|.-.-..+.+.- ..|.+.++......+ .......+.-+=..|...++
T Consensus 165 L~KA~~m~~KAV~~~i~~kq---~~~~~e~W~k~~~~~~~d~-d~f~~i~~ki~~~~~--~~~~~~~~~~l~~~y~~~~~ 238 (906)
T PRK14720 165 KEKAITYLKKAIYRFIKKKQ---YVGIEEIWSKLVHYNSDDF-DFFLRIERKVLGHRE--FTRLVGLLEDLYEPYKALED 238 (906)
T ss_pred HHHHHHHHHHHHHHHHhhhc---chHHHHHHHHHHhcCcccc-hHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhhhhh
Confidence 99999999999987432210 0011111221111111111 011111111111111 22344556666689999999
Q ss_pred HHHHHHHHHHHHHHhhhhccC
Q psy597 515 YKEAEILYKQVLTRAHEREFG 535 (546)
Q Consensus 515 ~~~A~~~~~~al~~~~~~~~~ 535 (546)
|++++.+++.+++..+.+..+
T Consensus 239 ~~~~i~iLK~iL~~~~~n~~a 259 (906)
T PRK14720 239 WDEVIYILKKILEHDNKNNKA 259 (906)
T ss_pred hhHHHHHHHHHHhcCCcchhh
Confidence 999999999999988876544
No 111
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.06 E-value=6e-09 Score=92.40 Aligned_cols=104 Identities=23% Similarity=0.243 Sum_probs=83.9
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy597 331 HAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELK 410 (546)
Q Consensus 331 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~ 410 (546)
....+.+++.+|.++...|++++|+..|++++.+. ++++..+.++.++|.++...|++++|+.+|++++.+
T Consensus 31 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~---- 101 (168)
T CHL00033 31 GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER---- 101 (168)
T ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Confidence 34457889999999999999999999999999884 334556779999999999999999999999999998
Q ss_pred cCCCChHHHHHHHHHHHHHH-------HcCCHHHHHHHHHHHHH
Q psy597 411 LGPDDSNVAKTKNNLASCYL-------KQGKYKEAEILYKQVLT 447 (546)
Q Consensus 411 ~~~~~~~~~~~~~~La~~y~-------~~g~~~eA~~~~~~al~ 447 (546)
.|.....+.++|.+|. ..|+++.|+..+.+++.
T Consensus 102 ----~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~ 141 (168)
T CHL00033 102 ----NPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAE 141 (168)
T ss_pred ----CcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHH
Confidence 5666677788888887 55555555555554443
No 112
>KOG1156|consensus
Probab=99.05 E-value=4.6e-08 Score=98.32 Aligned_cols=195 Identities=14% Similarity=0.113 Sum_probs=150.6
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
+++....+|..+|.++....+|++|+.+|..|+.+ .+....++..++.+...+++++-....-.+.++..
T Consensus 70 ~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~--------~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-- 139 (700)
T KOG1156|consen 70 NDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI--------EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-- 139 (700)
T ss_pred cCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--
Confidence 56677788999999999999999999999999988 56668899999999999999999999988888885
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 368 VLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 447 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~ 447 (546)
|..-..|...+..+...|++..|....+...........+.......+......+..+.|.+++|.+.+..--.
T Consensus 140 ------~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~ 213 (700)
T KOG1156|consen 140 ------PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK 213 (700)
T ss_pred ------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh
Confidence 88888999999999999999999999988877755333333344556666677788889998888887765433
Q ss_pred hhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q psy597 448 RAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYL 510 (546)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~ 510 (546)
..- .........+..+...++.++|...|...+.. .|+....+..+-.++.
T Consensus 214 ~i~----Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--------nPdn~~Yy~~l~~~lg 264 (700)
T KOG1156|consen 214 QIV----DKLAFEETKADLLMKLGQLEEAVKVYRRLLER--------NPDNLDYYEGLEKALG 264 (700)
T ss_pred HHH----HHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--------CchhHHHHHHHHHHHH
Confidence 211 11112233445567777777777777776654 6888888887777776
No 113
>KOG2376|consensus
Probab=99.04 E-value=1e-06 Score=87.99 Aligned_cols=301 Identities=16% Similarity=0.139 Sum_probs=190.6
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChh
Q psy597 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPD 291 (546)
Q Consensus 212 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (546)
+.+..++...|.++++.|+|++|+..|+..++. ...+++.-+.....+.... .....+........+
T Consensus 107 ~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn---~~dd~d~~~r~nl~a~~a~----------l~~~~~q~v~~v~e~ 173 (652)
T KOG2376|consen 107 RLDDKLLELRAQVLYRLERYDEALDIYQHLAKN---NSDDQDEERRANLLAVAAA----------LQVQLLQSVPEVPED 173 (652)
T ss_pred ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHHHh----------hhHHHHHhccCCCcc
Confidence 334567888999999999999999999887652 2222222111111110000 000011111223344
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHA-------AVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 364 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 364 (546)
....+++.|.++...|+|.+|++.+++|+.++++.+..++. ....+...++.++..+|+..+|...|...+..
T Consensus 174 syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~ 253 (652)
T KOG2376|consen 174 SYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKR 253 (652)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh
Confidence 67889999999999999999999999999998877543322 34567788999999999999999999887764
Q ss_pred HHHhcCCCChHH---------------------------------------------HHHHHHHHHHHHHcCCHHHHHHH
Q psy597 365 REKVLGKEHPDV---------------------------------------------AKQLNNLALLCQNQSKYEEVERY 399 (546)
Q Consensus 365 ~~~~~~~~~~~~---------------------------------------------~~~~~~la~~~~~~g~~~eA~~~ 399 (546)
.. .|.|.. -.++.|.+.+.+..+.-+.+.+.
T Consensus 254 ~~----~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~ 329 (652)
T KOG2376|consen 254 NP----ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVREL 329 (652)
T ss_pred cC----CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 21 111111 11233444444444433333222
Q ss_pred ---------------------------HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhc
Q psy597 400 ---------------------------YQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 452 (546)
Q Consensus 400 ---------------------------~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~ 452 (546)
+.++..........+......+...++.+...+|++..|++.+...+... .+
T Consensus 330 ~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~-~s 408 (652)
T KOG2376|consen 330 SASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESW-KS 408 (652)
T ss_pred HHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhh-hh
Confidence 12222222222222233346678888999999999999999998554221 11
Q ss_pred ccCccc---CCC-hhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 453 EFGACD---GDN-KPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 528 (546)
Q Consensus 453 ~~~~~~---~~~-~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~ 528 (546)
.+.... ... .+...+...++.+.|...+.+|+..|...... .+.....+..++.+..+.|+-++|...+++.++.
T Consensus 409 s~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~-s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~ 487 (652)
T KOG2376|consen 409 SILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTG-SIALLSLMREAAEFKLRHGNEEEASSLLEELVKF 487 (652)
T ss_pred hhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhccc-chHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh
Confidence 111111 111 11222666777788999999999999877654 4666677788888989999999999999999986
Q ss_pred hhh
Q psy597 529 AHE 531 (546)
Q Consensus 529 ~~~ 531 (546)
.|.
T Consensus 488 n~~ 490 (652)
T KOG2376|consen 488 NPN 490 (652)
T ss_pred CCc
Confidence 653
No 114
>KOG1127|consensus
Probab=99.04 E-value=3.2e-08 Score=103.67 Aligned_cols=217 Identities=17% Similarity=0.165 Sum_probs=177.4
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
-++..+.++..||.+|+...+...|..+|.+|.++ ++..+.+.-..+..|....+++.|...+-.+-+....
T Consensus 487 ld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeL--------Datdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a 558 (1238)
T KOG1127|consen 487 LDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFEL--------DATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPA 558 (1238)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchH
Confidence 56888999999999999999999999999999988 5666888889999999999999999996665554311
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 368 VLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 447 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~ 447 (546)
......|..+|..|...+++..|+..|+.|+.. +|....+|..+|.+|...|++..|++.|.++..
T Consensus 559 ------~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~--------dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~ 624 (1238)
T KOG1127|consen 559 ------FACKENWVQRGPYYLEAHNLHGAVCEFQSALRT--------DPKDYNLWLGLGEAYPESGRYSHALKVFTKASL 624 (1238)
T ss_pred ------HHHHhhhhhccccccCccchhhHHHHHHHHhcC--------CchhHHHHHHHHHHHHhcCceehHHHhhhhhHh
Confidence 223345666999999999999999999999998 999999999999999999999999999999988
Q ss_pred hhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 448 RAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 527 (546)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~ 527 (546)
+.|.+.++ ....+......|++.+|...+...+..+..-... ....+.++..++..+...|=+.+|..+++++++
T Consensus 625 LrP~s~y~----~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~-q~gLaE~~ir~akd~~~~gf~~kavd~~eksie 699 (1238)
T KOG1127|consen 625 LRPLSKYG----RFKEAVMECDNGKYKEALDALGLIIYAFSLERTG-QNGLAESVIRDAKDSAITGFQKKAVDFFEKSIE 699 (1238)
T ss_pred cCcHhHHH----HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 76654322 3334455677899999999888887665433221 345677888888888888999999999999988
Q ss_pred Hhhh
Q psy597 528 RAHE 531 (546)
Q Consensus 528 ~~~~ 531 (546)
.+.-
T Consensus 700 ~f~~ 703 (1238)
T KOG1127|consen 700 SFIV 703 (1238)
T ss_pred HHHH
Confidence 7743
No 115
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.03 E-value=4.7e-08 Score=87.00 Aligned_cols=106 Identities=22% Similarity=0.288 Sum_probs=90.2
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy597 329 ENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYE 408 (546)
Q Consensus 329 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~ 408 (546)
...+..+.+++.+|..+...|++++|+.+|++++... ++++....++.++|.++...|++++|+.+|.+++.+
T Consensus 29 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-- 101 (172)
T PRK02603 29 NKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLE-----EDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL-- 101 (172)
T ss_pred ccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-----hccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 4456678889999999999999999999999999875 233445788999999999999999999999999998
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 409 LKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 447 (546)
Q Consensus 409 ~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~ 447 (546)
.|....++..+|.+|...|+...+...+..++.
T Consensus 102 ------~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~ 134 (172)
T PRK02603 102 ------NPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEA 134 (172)
T ss_pred ------CcccHHHHHHHHHHHHHcCChHhHhhCHHHHHH
Confidence 777788899999999999987777766555543
No 116
>KOG0553|consensus
Probab=99.03 E-value=6.5e-09 Score=95.62 Aligned_cols=124 Identities=27% Similarity=0.288 Sum_probs=109.9
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCCh
Q psy597 211 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHP 290 (546)
Q Consensus 211 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 290 (546)
.-..++.+-.-|.-+...++|.+|+..|.+||++ .|
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l--------------------------------------------~P 112 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIEL--------------------------------------------DP 112 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------------------------------------------CC
Confidence 3456778888999999999999999999999994 67
Q ss_pred hHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q psy597 291 DVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 370 (546)
Q Consensus 291 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 370 (546)
..+..|.+.|.+|...|.|+.|++.++.|+.+ +|....+|..||.+|..+|++.+|+..|++++++.
T Consensus 113 ~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--------Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLeld----- 179 (304)
T KOG0553|consen 113 TNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--------DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELD----- 179 (304)
T ss_pred CcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--------ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccC-----
Confidence 77888999999999999999999999999998 68889999999999999999999999999999994
Q ss_pred CCChHHHHHHHHHHHHHHHcCCHH
Q psy597 371 KEHPDVAKQLNNLALLCQNQSKYE 394 (546)
Q Consensus 371 ~~~~~~~~~~~~la~~~~~~g~~~ 394 (546)
|.......+|..+-...+...
T Consensus 180 ---P~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 180 ---PDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred ---CCcHHHHHHHHHHHHHhcCCC
Confidence 777777777777777666655
No 117
>KOG3060|consensus
Probab=99.02 E-value=1e-07 Score=85.41 Aligned_cols=188 Identities=18% Similarity=0.149 Sum_probs=133.8
Q ss_pred ChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy597 289 HPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 368 (546)
Q Consensus 289 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 368 (546)
.++...++-....+....|+.+-|..++++....+ |........-|..+...|++++|+++|+..++-
T Consensus 48 g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--------p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d---- 115 (289)
T KOG3060|consen 48 GDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--------PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED---- 115 (289)
T ss_pred CchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--------CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc----
Confidence 45566667777788888899999999988876664 222445566788888999999999999988765
Q ss_pred cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 369 LGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 369 ~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
+|....++-..-.+...+|+.-+|++.+..-++. .+....+|..++.+|...|+|++|.-+|++++-+
T Consensus 116 ----dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~--------F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 116 ----DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK--------FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred ----CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH--------hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 4777777777777778889999999999988888 5677889999999999999999999999998876
Q ss_pred hhhcccCcccCCChhhHH---HHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHc
Q psy597 449 AHEREFGACDGDNKPIWQ---DRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ 512 (546)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~ 512 (546)
.|-++. .....+.. .....+...+..+|.+|+++ .|....+++.+-.+....
T Consensus 184 ~P~n~l----~f~rlae~~Yt~gg~eN~~~arkyy~~alkl--------~~~~~ral~GI~lc~~~l 238 (289)
T KOG3060|consen 184 QPFNPL----YFQRLAEVLYTQGGAENLELARKYYERALKL--------NPKNLRALFGIYLCGSAL 238 (289)
T ss_pred CCCcHH----HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh--------ChHhHHHHHHHHHHHHHH
Confidence 332110 00011111 11223455667777777776 565566666555544433
No 118
>KOG1128|consensus
Probab=99.01 E-value=6.8e-09 Score=105.57 Aligned_cols=218 Identities=20% Similarity=0.183 Sum_probs=160.0
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-----CchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccC
Q psy597 211 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTS-----GKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSG 285 (546)
Q Consensus 211 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-----~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~ 285 (546)
.|..+..-..++..+...|-...|+..|++.-...+... |....|..+...-
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erlemw~~vi~CY~~lg~~~kaeei~~q~----------------------- 450 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLEMWDPVILCYLLLGQHGKAEEINRQE----------------------- 450 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHHHHHHHHHHHHHhcccchHHHHHHHH-----------------------
Confidence 466677788899999999999999999987654322211 1111111111111
Q ss_pred CCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy597 286 GHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 365 (546)
Q Consensus 286 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 365 (546)
. ..+..+..|..+|.+.....=|++|.++++..- +.+...+|......++|.++..+++.++++.
T Consensus 451 l-ek~~d~~lyc~LGDv~~d~s~yEkawElsn~~s--------------arA~r~~~~~~~~~~~fs~~~~hle~sl~~n 515 (777)
T KOG1128|consen 451 L-EKDPDPRLYCLLGDVLHDPSLYEKAWELSNYIS--------------ARAQRSLALLILSNKDFSEADKHLERSLEIN 515 (777)
T ss_pred h-cCCCcchhHHHhhhhccChHHHHHHHHHhhhhh--------------HHHHHhhccccccchhHHHHHHHHHHHhhcC
Confidence 1 234555667777776666555555554444322 4456677777778899999999999999994
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy597 366 EKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQV 445 (546)
Q Consensus 366 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~a 445 (546)
|.....|+++|.+..+.+++..|..+|.+++.+ .|+...+|+|++..|.+.|+..+|...++++
T Consensus 516 --------plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL--------~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EA 579 (777)
T KOG1128|consen 516 --------PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL--------EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEA 579 (777)
T ss_pred --------ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc--------CCCchhhhhhhhHHHHHHhhhHHHHHHHHHH
Confidence 889999999999999999999999999999998 8999999999999999999999999999999
Q ss_pred HHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHH
Q psy597 446 LTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEI 486 (546)
Q Consensus 446 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~ 486 (546)
++.. ...+..+-+........|.+++|...|.+-+.+
T Consensus 580 lKcn----~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 580 LKCN----YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred hhcC----CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 9853 333444455555566777788887777777765
No 119
>KOG3060|consensus
Probab=99.00 E-value=1.5e-07 Score=84.39 Aligned_cols=171 Identities=17% Similarity=0.171 Sum_probs=146.0
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChh
Q psy597 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPD 291 (546)
Q Consensus 212 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (546)
|+....+-....+....|+.+.|..++++.... .|.
T Consensus 49 ~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~--------------------------------------------fp~ 84 (289)
T KOG3060|consen 49 DEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR--------------------------------------------FPG 84 (289)
T ss_pred chHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh--------------------------------------------CCC
Confidence 456677777888888999999999999887663 245
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 371 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 371 (546)
..++...-|..+...|.+++|+++|+..++ ++|....++-..-.+...+|+.-+|++.+..-++.+
T Consensus 85 S~RV~~lkam~lEa~~~~~~A~e~y~~lL~--------ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F------ 150 (289)
T KOG3060|consen 85 SKRVGKLKAMLLEATGNYKEAIEYYESLLE--------DDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF------ 150 (289)
T ss_pred ChhHHHHHHHHHHHhhchhhHHHHHHHHhc--------cCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh------
Confidence 556667778899999999999999999885 356666677777777888999999999999999997
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHh
Q psy597 372 EHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQG---KYKEAEILYKQVLTR 448 (546)
Q Consensus 372 ~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g---~~~eA~~~~~~al~~ 448 (546)
+....+|..++.+|...|+|++|.-+|++.+=+ .|..+..+..+|.+++-+| ++.-|.++|.+++++
T Consensus 151 --~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~--------~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 151 --MNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI--------QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred --cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 788999999999999999999999999999988 8888888999999998887 577899999999998
Q ss_pred hh
Q psy597 449 AH 450 (546)
Q Consensus 449 ~~ 450 (546)
.+
T Consensus 221 ~~ 222 (289)
T KOG3060|consen 221 NP 222 (289)
T ss_pred Ch
Confidence 65
No 120
>PLN03077 Protein ECB2; Provisional
Probab=98.99 E-value=4.4e-08 Score=109.97 Aligned_cols=195 Identities=14% Similarity=0.101 Sum_probs=137.1
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 371 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 371 (546)
...+++.+...|.+.|++++|...|++... + ...+|+.+...|...|++++|+.+|++++.. .
T Consensus 423 ~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-------~----d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~---~--- 485 (857)
T PLN03077 423 YVVVANALIEMYSKCKCIDKALEVFHNIPE-------K----DVISWTSIIAGLRLNNRCFEALIFFRQMLLT---L--- 485 (857)
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHhCCC-------C----CeeeHHHHHHHHHHCCCHHHHHHHHHHHHhC---C---
Confidence 345678888899999999999998887532 1 1346888888899999999999999988642 1
Q ss_pred CChHHH----------------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChH
Q psy597 372 EHPDVA----------------------------------KQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSN 417 (546)
Q Consensus 372 ~~~~~~----------------------------------~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~ 417 (546)
.|+.. ..++.+-..|.+.|++++|...|... +.
T Consensus 486 -~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~------------~~ 552 (857)
T PLN03077 486 -KPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH------------EK 552 (857)
T ss_pred -CCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc------------CC
Confidence 12211 12233446677777777777776553 12
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHH
Q psy597 418 VAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSN 497 (546)
Q Consensus 418 ~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~ 497 (546)
...+|+.+...|...|+.++|+.+|++........ ...........+...|..++|..+|......+ +-.|.
T Consensus 553 d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P---d~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~-----gi~P~ 624 (857)
T PLN03077 553 DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP---DEVTFISLLCACSRSGMVTQGLEYFHSMEEKY-----SITPN 624 (857)
T ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---CcccHHHHHHHHhhcChHHHHHHHHHHHHHHh-----CCCCc
Confidence 34578999999999999999999999987642211 11223334445777888888888888776332 11233
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy597 498 VAKTKNNLASCYLKQGKYKEAEILYKQV 525 (546)
Q Consensus 498 ~~~~~~~La~~y~~~g~~~~A~~~~~~a 525 (546)
...|..+..+|.+.|++++|.+++++.
T Consensus 625 -~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 625 -LKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred -hHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 467888999999999999999988764
No 121
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.98 E-value=4.2e-08 Score=84.56 Aligned_cols=131 Identities=24% Similarity=0.214 Sum_probs=107.2
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHH
Q psy597 297 NILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDV 376 (546)
Q Consensus 297 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 376 (546)
+.-.......++...+...++..+.-. ++.+....+...+|.+++..|++++|...|++++... +++...
T Consensus 15 y~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-----~d~~l~ 84 (145)
T PF09976_consen 15 YEQALQALQAGDPAKAEAAAEQLAKDY-----PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-----PDPELK 84 (145)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----CCHHHH
Confidence 333344446888888888888877764 5567778899999999999999999999999999864 334556
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy597 377 AKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 446 (546)
Q Consensus 377 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al 446 (546)
..+...+|.++...|++++|+..++.. ++.+..+.++..+|.+|...|++++|...|++++
T Consensus 85 ~~a~l~LA~~~~~~~~~d~Al~~L~~~---------~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 85 PLARLRLARILLQQGQYDEALATLQQI---------PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhc---------cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 778899999999999999999999662 2355677788899999999999999999999874
No 122
>KOG4162|consensus
Probab=98.98 E-value=1.5e-07 Score=96.64 Aligned_cols=301 Identities=18% Similarity=0.100 Sum_probs=193.6
Q ss_pred hHHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHHHhcCchhH------HHhhHHHHHhhhhhhHHHHHHHHHHHHhcc
Q psy597 212 PARLRTLHNLVI-QYASQGRYEVAVPLCKQALEDLEKTSGKYEA------AETLEDCALRSRKESYDIVKQAKVAQILGS 284 (546)
Q Consensus 212 p~~~~~~~~lg~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~------a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~ 284 (546)
|.++..+...+. |+.+.|.+++++.+..+++..+....+.... +..+...+.....+........+..+.+.+
T Consensus 390 ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~ 469 (799)
T KOG4162|consen 390 PSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEE 469 (799)
T ss_pred CCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHH
Confidence 444555555444 4556799999999999999976443332221 111112222222222222223333344444
Q ss_pred CCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 285 GGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 364 (546)
Q Consensus 285 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 364 (546)
...-.|..+.+.+.++.-|..+++.+.|..+..+++++.+ ...+.+|..+|.++...+++.+|+.+...+++-
T Consensus 470 av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~-------~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E 542 (799)
T KOG4162|consen 470 AVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNR-------GDSAKAWHLLALVLSAQKRLKEALDVVDAALEE 542 (799)
T ss_pred HHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcC-------CccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 4334555568899999999999999999999999999832 223678999999999999999999999999988
Q ss_pred HHHhcCCCC-----------hHH--HHHHHHH----------------------HHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 365 REKVLGKEH-----------PDV--AKQLNNL----------------------ALLCQNQSKYEEVERYYQRALEIYEL 409 (546)
Q Consensus 365 ~~~~~~~~~-----------~~~--~~~~~~l----------------------a~~~~~~g~~~eA~~~~~~al~~~~~ 409 (546)
....++..+ +.. ..+...| +.+....++..+|+..++++..+...
T Consensus 543 ~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~ 622 (799)
T KOG4162|consen 543 FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVAS 622 (799)
T ss_pred hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHh
Confidence 643211100 000 0000000 11112233455555555555554432
Q ss_pred hc----------------CCCCh--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhc
Q psy597 410 KL----------------GPDDS--NVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKN 471 (546)
Q Consensus 410 ~~----------------~~~~~--~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (546)
.. +++++ .....|...+..+...++.++|..++.++-.+.+.. ...+...+..+...|
T Consensus 623 ~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~----~~~~~~~G~~~~~~~ 698 (799)
T KOG4162|consen 623 QLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLS----ASVYYLRGLLLEVKG 698 (799)
T ss_pred hhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhh----HHHHHHhhHHHHHHH
Confidence 11 11111 123456677888999999999999999988875332 123444555577778
Q ss_pred hhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHHhhh
Q psy597 472 KAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEI--LYKQVLTRAHE 531 (546)
Q Consensus 472 ~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~--~~~~al~~~~~ 531 (546)
+..+|...|..|+.+ +|+...+...+|.++...|+..-|.. .+..++++.|.
T Consensus 699 ~~~EA~~af~~Al~l--------dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~ 752 (799)
T KOG4162|consen 699 QLEEAKEAFLVALAL--------DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL 752 (799)
T ss_pred hhHHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC
Confidence 888888888888877 78888889999999999999888888 99999996544
No 123
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.94 E-value=6.9e-08 Score=83.21 Aligned_cols=105 Identities=25% Similarity=0.222 Sum_probs=89.0
Q ss_pred CCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy597 286 GHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 365 (546)
Q Consensus 286 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 365 (546)
.++.+....+...+|.+++..|++++|...|++++... +++.....+...+|.++...|++++|+..+...
T Consensus 41 ~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-----~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~---- 111 (145)
T PF09976_consen 41 YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-----PDPELKPLARLRLARILLQQGQYDEALATLQQI---- 111 (145)
T ss_pred CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc----
Confidence 44556678889999999999999999999999999863 345556778899999999999999999999662
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy597 366 EKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRAL 404 (546)
Q Consensus 366 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al 404 (546)
.+.+..+.++..+|.+|...|++++|+..|++|+
T Consensus 112 -----~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 112 -----PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred -----cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 2235667788899999999999999999999875
No 124
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.93 E-value=1.1e-06 Score=90.72 Aligned_cols=270 Identities=17% Similarity=0.159 Sum_probs=172.4
Q ss_pred ChhhHHHhhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHh------------------h
Q psy597 197 PPSQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAET------------------L 258 (546)
Q Consensus 197 ~~~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~------------------~ 258 (546)
...++..+.......++....+-..|.++...|++++|...|...++..|....-+..-.. +
T Consensus 20 ~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~ 99 (517)
T PF12569_consen 20 YEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLEL 99 (517)
T ss_pred HHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHH
Confidence 3456666677777888999999999999999999999999999999876654421111111 1
Q ss_pred HHHHHhhhhhhHHH------------HH-HH--HHHHHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy597 259 EDCALRSRKESYDI------------VK-QA--KVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIR 323 (546)
Q Consensus 259 ~~~~l~~~~~~~~~------------~~-~~--~~~~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 323 (546)
+......++..... +. .. -....+. ..++.....+-.+|....+..-....+.......
T Consensus 100 y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~------KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l 173 (517)
T PF12569_consen 100 YDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLR------KGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSL 173 (517)
T ss_pred HHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHh------cCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhh
Confidence 11111111000000 00 00 0000011 1122333334444443333222222223222221
Q ss_pred HHh--cC-------CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHH
Q psy597 324 EKT--LG-------ENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYE 394 (546)
Q Consensus 324 ~~~--~g-------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 394 (546)
... +. ..+.....+++.+|..|...|++++|+.+.+++|+. .|..+..|...|.++-..|++.
T Consensus 174 ~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--------tPt~~ely~~KarilKh~G~~~ 245 (517)
T PF12569_consen 174 ESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--------TPTLVELYMTKARILKHAGDLK 245 (517)
T ss_pred cccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHCCCHH
Confidence 111 00 112234678899999999999999999999999998 4889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccC---------CChhhH
Q psy597 395 EVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDG---------DNKPIW 465 (546)
Q Consensus 395 eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~---------~~~~~~ 465 (546)
+|..+++.|..+ +...-.+....+..+++.|+.++|...+..-... +.+.... ....+.
T Consensus 246 ~Aa~~~~~Ar~L--------D~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~----~~~~~~~L~~mQc~Wf~~e~a~ 313 (517)
T PF12569_consen 246 EAAEAMDEAREL--------DLADRYINSKCAKYLLRAGRIEEAEKTASLFTRE----DVDPLSNLNDMQCMWFETECAE 313 (517)
T ss_pred HHHHHHHHHHhC--------ChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCC----CCCcccCHHHHHHHHHHHHHHH
Confidence 999999999988 7777777777888899999999999877654322 1111111 112233
Q ss_pred HHHhhchhhHHHHHHHHHHHHHHHHcC
Q psy597 466 QDRQKNKAKNREKYYQRALEIYELKLG 492 (546)
Q Consensus 466 ~~~~~~~~~~A~~~~~~Al~~~~~~~~ 492 (546)
++...|++..|+..|....++|.....
T Consensus 314 a~~r~~~~~~ALk~~~~v~k~f~~~~~ 340 (517)
T PF12569_consen 314 AYLRQGDYGLALKRFHAVLKHFDDFEE 340 (517)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhc
Confidence 477889999999999999888876643
No 125
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.92 E-value=2.7e-07 Score=84.71 Aligned_cols=102 Identities=17% Similarity=0.179 Sum_probs=94.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHHH
Q psy597 218 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLN 297 (546)
Q Consensus 218 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 297 (546)
+|..|.-++..|+|..|...|..-++. .++.+..+.+++
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~-----------------------------------------YP~s~~~~nA~y 182 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKK-----------------------------------------YPNSTYTPNAYY 182 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc-----------------------------------------CCCCcccchhHH
Confidence 899999999999999999999999886 446778899999
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy597 298 ILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 365 (546)
Q Consensus 298 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 365 (546)
+||.+++.+|+|+.|...|..++.-+ +++|..+++++.+|.+...+|+.++|...|+++++.+
T Consensus 183 WLGe~~y~qg~y~~Aa~~f~~~~k~~-----P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 183 WLGESLYAQGDYEDAAYIFARVVKDY-----PKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHhC-----CCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 99999999999999999999999876 6678889999999999999999999999999999986
No 126
>KOG1127|consensus
Probab=98.91 E-value=8.8e-08 Score=100.47 Aligned_cols=183 Identities=14% Similarity=0.093 Sum_probs=137.3
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
-++..+.+.-..+..|....+++.|....-.+-+.... ......|..+|..|...+++..|+..|+.+++.
T Consensus 521 LDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a------~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~--- 591 (1238)
T KOG1127|consen 521 LDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPA------FACKENWVQRGPYYLEAHNLHGAVCEFQSALRT--- 591 (1238)
T ss_pred CCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchH------HHHHhhhhhccccccCccchhhHHHHHHHHhcC---
Confidence 46777788888899999999999998885444433211 122345666899999999999999999999988
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 368 VLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 447 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~ 447 (546)
+|....+|..+|.+|...|.+..|++.|.+|..+ +|......+..+.+....|+|.+|+..+...+.
T Consensus 592 -----dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--------rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 592 -----DPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--------RPLSKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred -----CchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--------CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4889999999999999999999999999999988 888888899999999999999999999998887
Q ss_pred hhhhcccCc---ccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcC
Q psy597 448 RAHEREFGA---CDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLG 492 (546)
Q Consensus 448 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~ 492 (546)
.......+. ..........+...|-...|..+++++++.+.-...
T Consensus 659 ~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~ 706 (1238)
T KOG1127|consen 659 AFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI 706 (1238)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 654322111 111112222245556666777777777777654443
No 127
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.91 E-value=7.4e-08 Score=85.73 Aligned_cols=114 Identities=21% Similarity=0.358 Sum_probs=92.1
Q ss_pred CCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy597 286 GHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 365 (546)
Q Consensus 286 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 365 (546)
....+..+.+++.+|..+...|++++|+.+|++++...+ +.+....++.++|.++...|++++|+.++.+++...
T Consensus 28 ~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 102 (172)
T PRK02603 28 INKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEE-----DPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN 102 (172)
T ss_pred cccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh-----ccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 335677788899999999999999999999999998752 334456789999999999999999999999999984
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHHHHHhcC
Q psy597 366 EKVLGKEHPDVAKQLNNLALLCQNQSK-------YEEVERYYQRALEIYELKLG 412 (546)
Q Consensus 366 ~~~~~~~~~~~~~~~~~la~~~~~~g~-------~~eA~~~~~~al~~~~~~~~ 412 (546)
|.....+..+|.++...|+ ++.|+..|.++++.++....
T Consensus 103 --------p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~ 148 (172)
T PRK02603 103 --------PKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR 148 (172)
T ss_pred --------cccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh
Confidence 6667788888988887665 56666666666666555543
No 128
>KOG2376|consensus
Probab=98.89 E-value=1.9e-06 Score=86.13 Aligned_cols=145 Identities=21% Similarity=0.201 Sum_probs=108.5
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-----------
Q psy597 297 NILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR----------- 365 (546)
Q Consensus 297 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----------- 365 (546)
+..+.|.++.++.++|+..++-+ + +....++...|.+++++|+|++|...|+..++..
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~~~-~----------~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~n 151 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLKGL-D----------RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRAN 151 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHhcc-c----------ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 67788888888888888887721 1 1113456677888888899999998888764321
Q ss_pred ------------HHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh-------HHHHHHHHHH
Q psy597 366 ------------EKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDS-------NVAKTKNNLA 426 (546)
Q Consensus 366 ------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~-------~~~~~~~~La 426 (546)
.+.......+....++|.|.++...|+|.+|++.+++|+.+++..+..++. ....+...|+
T Consensus 152 l~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQla 231 (652)
T KOG2376|consen 152 LLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLA 231 (652)
T ss_pred HHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHH
Confidence 011111223366789999999999999999999999999999887654332 2456778899
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhhhc
Q psy597 427 SCYLKQGKYKEAEILYKQVLTRAHER 452 (546)
Q Consensus 427 ~~y~~~g~~~eA~~~~~~al~~~~~~ 452 (546)
.++..+|+.++|...|...+...+.+
T Consensus 232 yVlQ~~Gqt~ea~~iy~~~i~~~~~D 257 (652)
T KOG2376|consen 232 YVLQLQGQTAEASSIYVDIIKRNPAD 257 (652)
T ss_pred HHHHHhcchHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998866543
No 129
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.88 E-value=2.6e-08 Score=82.57 Aligned_cols=103 Identities=17% Similarity=0.164 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q psy597 294 TMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEH 373 (546)
Q Consensus 294 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 373 (546)
.+++.+|..+...|++++|+..|.+++... ++++....+++.+|.++...|++++|+.+|++++... +++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----p~~ 72 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKY-----PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-----PKS 72 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-----CCC
Confidence 568899999999999999999999998764 4445557789999999999999999999999999875 444
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 374 PDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406 (546)
Q Consensus 374 ~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 406 (546)
+....++..+|.++...|++++|+.++.++++.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 73 PKAPDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 556788999999999999999999999999998
No 130
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.88 E-value=4.3e-08 Score=81.24 Aligned_cols=105 Identities=14% Similarity=0.141 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHH
Q psy597 215 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVAT 294 (546)
Q Consensus 215 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 294 (546)
+..++.+|..+...|++++|+..|.+++.. .++++....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----------------------------------------~~~~~~~~~ 40 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKK-----------------------------------------YPKSTYAPN 40 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----------------------------------------CCCccccHH
Confidence 357899999999999999999999999874 234455577
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy597 295 MLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 365 (546)
Q Consensus 295 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 365 (546)
+++.+|.++...|+++.|+.+|++++... ++++....++..+|.++...|++++|+.++.+++...
T Consensus 41 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 41 AHYWLGEAYYAQGKYADAAKAFLAVVKKY-----PKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHC-----CCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 89999999999999999999999999875 4455567789999999999999999999999999885
No 131
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.88 E-value=1.5e-06 Score=82.99 Aligned_cols=212 Identities=15% Similarity=0.071 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q psy597 295 MLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHP 374 (546)
Q Consensus 295 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 374 (546)
++..-+.+-..+|+++.|-.++.++-+.. +++ ........+.+....|+++.|.....++++.. |
T Consensus 120 ~~l~aA~AA~qrgd~~~an~yL~eaae~~------~~~-~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~--------p 184 (400)
T COG3071 120 AYLLAAEAAQQRGDEDRANRYLAEAAELA------GDD-TLAVELTRARLLLNRRDYPAARENVDQLLEMT--------P 184 (400)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhccC------CCc-hHHHHHHHHHHHHhCCCchhHHHHHHHHHHhC--------c
Confidence 34444455555566666666665555441 111 12344455555666666666666666555552 4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------------------HHHhcCC---------------CChHHHH
Q psy597 375 DVAKQLNNLALLCQNQSKYEEVERYYQRALEI-------------------YELKLGP---------------DDSNVAK 420 (546)
Q Consensus 375 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-------------------~~~~~~~---------------~~~~~~~ 420 (546)
....++.....+|...|++.+...++.+.-+- .++...+ .-...+.
T Consensus 185 r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~ 264 (400)
T COG3071 185 RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPE 264 (400)
T ss_pred CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChh
Confidence 44444455555555555555555444322110 0000000 0111234
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcc---------------------------cCcccCCChhhHHHHhhchh
Q psy597 421 TKNNLASCYLKQGKYKEAEILYKQVLTRAHERE---------------------------FGACDGDNKPIWQDRQKNKA 473 (546)
Q Consensus 421 ~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~ 473 (546)
....++.-+...|++++|.+..+++++...+.. .........+|..+...+.+
T Consensus 265 l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w 344 (400)
T COG3071 265 LVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLW 344 (400)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHH
Confidence 445567778899999999999999987533211 01112233344556666677
Q ss_pred hHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q psy597 474 KNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAH 530 (546)
Q Consensus 474 ~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~ 530 (546)
.+|..+++.|++. ......+..+|.++.++|+..+|...+++++.+..
T Consensus 345 ~kA~~~leaAl~~---------~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~ 392 (400)
T COG3071 345 GKASEALEAALKL---------RPSASDYAELADALDQLGEPEEAEQVRREALLLTR 392 (400)
T ss_pred HHHHHHHHHHHhc---------CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Confidence 7777777766654 22345666777777777777777777777775543
No 132
>KOG4340|consensus
Probab=98.87 E-value=1.6e-07 Score=85.87 Aligned_cols=178 Identities=19% Similarity=0.135 Sum_probs=121.4
Q ss_pred hhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhc
Q psy597 204 QVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILG 283 (546)
Q Consensus 204 ~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 283 (546)
+...+...|.+...+..+|.||+...+|..|..+|++.-.
T Consensus 33 l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q---------------------------------------- 72 (459)
T KOG4340|consen 33 LGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ---------------------------------------- 72 (459)
T ss_pred HHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------------------------------
Confidence 3334455566666777777777777777777777776654
Q ss_pred cCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 284 SGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALE 363 (546)
Q Consensus 284 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 363 (546)
.+|.........+..++..+.+..|+.......+ ++.....++..-+.+.+..+++..+..+.++.
T Consensus 73 ----l~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D--------~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQl-- 138 (459)
T KOG4340|consen 73 ----LHPELEQYRLYQAQSLYKACIYADALRVAFLLLD--------NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQL-- 138 (459)
T ss_pred ----hChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcC--------CHHHHHHHHHHHHHHhcccccCcchHHHHHhc--
Confidence 3455555555566666777777776665544332 12223344445555666666666655544331
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy597 364 IREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYK 443 (546)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~ 443 (546)
. ....+...++.|.+.++.|++++|+.-|+.|++. ....+..-++++.+.+..|+++.|+++..
T Consensus 139 -----p---~en~Ad~~in~gCllykegqyEaAvqkFqaAlqv--------sGyqpllAYniALaHy~~~qyasALk~iS 202 (459)
T KOG4340|consen 139 -----P---SENEADGQINLGCLLYKEGQYEAAVQKFQAALQV--------SGYQPLLAYNLALAHYSSRQYASALKHIS 202 (459)
T ss_pred -----c---CCCccchhccchheeeccccHHHHHHHHHHHHhh--------cCCCchhHHHHHHHHHhhhhHHHHHHHHH
Confidence 1 1245778899999999999999999999999998 33444556889999999999999999999
Q ss_pred HHHHhhhh
Q psy597 444 QVLTRAHE 451 (546)
Q Consensus 444 ~al~~~~~ 451 (546)
+++...-.
T Consensus 203 EIieRG~r 210 (459)
T KOG4340|consen 203 EIIERGIR 210 (459)
T ss_pred HHHHhhhh
Confidence 98886543
No 133
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.84 E-value=3.3e-08 Score=98.34 Aligned_cols=113 Identities=18% Similarity=0.226 Sum_probs=100.3
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChH
Q psy597 296 LNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPD 375 (546)
Q Consensus 296 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 375 (546)
+...|..++..|+|++|+.+|.+++.+ .|....++.++|.+|...|++++|+..+++++.+. |.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~--------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--------P~ 68 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDL--------DPNNAELYADRAQANIKLGNFTEAVADANKAIELD--------PS 68 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------cC
Confidence 556788899999999999999999987 34457789999999999999999999999999984 77
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc
Q psy597 376 VAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ 432 (546)
Q Consensus 376 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~ 432 (546)
...+++++|.+|...|++++|+.+|++++.+ .|....+...++.|....
T Consensus 69 ~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l--------~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 69 LAKAYLRKGTACMKLEEYQTAKAALEKGASL--------APGDSRFTKLIKECDEKI 117 (356)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHH
Confidence 8889999999999999999999999999998 677777777787776555
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.79 E-value=4e-07 Score=89.24 Aligned_cols=152 Identities=22% Similarity=0.121 Sum_probs=132.9
Q ss_pred hhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q psy597 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 369 (546)
Q Consensus 290 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 369 (546)
+....+.+..+..++..|++++|...+...+.. .|.....+...+.++...++.++|.+.+++++...
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--------~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~---- 370 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAA--------QPDNPYYLELAGDILLEANKAKEAIERLKKALALD---- 370 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC----
Confidence 566778999999999999999999999997655 45556778888999999999999999999999984
Q ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q psy597 370 GKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRA 449 (546)
Q Consensus 370 ~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~ 449 (546)
|.......++|..|.+.|++.+|+..+++.+.- +|..+..|..||..|..+|+..+|...+.+....
T Consensus 371 ----P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~--------~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~- 437 (484)
T COG4783 371 ----PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN--------DPEDPNGWDLLAQAYAELGNRAEALLARAEGYAL- 437 (484)
T ss_pred ----CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc--------CCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHh-
Confidence 777899999999999999999999999998876 8888999999999999999999999888777654
Q ss_pred hhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHH
Q psy597 450 HEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEI 486 (546)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~ 486 (546)
.|++..|+..+..|.+.
T Consensus 438 --------------------~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 438 --------------------AGRLEQAIIFLMRASQQ 454 (484)
T ss_pred --------------------CCCHHHHHHHHHHHHHh
Confidence 57777887777777655
No 135
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.79 E-value=8.6e-08 Score=95.42 Aligned_cols=98 Identities=18% Similarity=0.192 Sum_probs=90.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChH
Q psy597 338 LNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSN 417 (546)
Q Consensus 338 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~ 417 (546)
+...|..++..|+|++|+.+|.+++... |....++.++|.+|...|++++|+..+++++.+ .|.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~--------P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--------~P~ 68 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLD--------PNNAELYADRAQANIKLGNFTEAVADANKAIEL--------DPS 68 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcC
Confidence 5567888999999999999999999984 777889999999999999999999999999999 788
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 418 VAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 418 ~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
...+++.+|.+|..+|++++|+..|++++.+.+.
T Consensus 69 ~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~ 102 (356)
T PLN03088 69 LAKAYLRKGTACMKLEEYQTAKAALEKGASLAPG 102 (356)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 8899999999999999999999999999987543
No 136
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.77 E-value=5.8e-08 Score=74.97 Aligned_cols=83 Identities=34% Similarity=0.483 Sum_probs=68.8
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q psy597 348 RGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLAS 427 (546)
Q Consensus 348 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~ 427 (546)
.|+|+.|+.+++++++.. +..+ ....++.+|.+|+..|++++|+.++++ ... ++....+...+|.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~-----~~~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--------~~~~~~~~~l~a~ 66 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELD-----PTNP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--------DPSNPDIHYLLAR 66 (84)
T ss_dssp TT-HHHHHHHHHHHHHHH-----CGTH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--------HHCHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHC-----CCCh-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--------CCCCHHHHHHHHH
Confidence 689999999999999986 2123 566778899999999999999999999 554 5556777888899
Q ss_pred HHHHcCCHHHHHHHHHHH
Q psy597 428 CYLKQGKYKEAEILYKQV 445 (546)
Q Consensus 428 ~y~~~g~~~eA~~~~~~a 445 (546)
++..+|++++|+..|+++
T Consensus 67 ~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 67 CLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHTT-HHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHhcC
Confidence 999999999999999875
No 137
>KOG3785|consensus
Probab=98.75 E-value=1.3e-06 Score=81.98 Aligned_cols=158 Identities=19% Similarity=0.117 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhH
Q psy597 213 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDV 292 (546)
Q Consensus 213 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 292 (546)
+...+-..+|.|++..|+|++|...|.-+.+ .....
T Consensus 55 EE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~--------------------------------------------~~~~~ 90 (557)
T KOG3785|consen 55 EEDSLQLWIAHCYFHLGDYEEALNVYTFLMN--------------------------------------------KDDAP 90 (557)
T ss_pred hhHHHHHHHHHHHHhhccHHHHHHHHHHHhc--------------------------------------------cCCCC
Confidence 3345667789999999999999999977655 11222
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHH----------HHHhcCCCCH----------HHHHHHHHHHHHHHHcCCHH
Q psy597 293 ATMLNILALVYRDQNKYKEAANLLNDALTI----------REKTLGENHA----------AVAATLNNLAVLYGKRGKYK 352 (546)
Q Consensus 293 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~----------~~~~~g~~~~----------~~~~~~~~la~~~~~~g~~~ 352 (546)
+..+.++|.+++..|.|.+|...-.++-+. ..+. ++.. ....-...||.+.+..-.|+
T Consensus 91 ~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahkl--ndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQ 168 (557)
T KOG3785|consen 91 AELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKL--NDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQ 168 (557)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh--CcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHH
Confidence 445667777777777777777665554211 0000 1100 11122344555556666677
Q ss_pred HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc
Q psy597 353 EAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ 432 (546)
Q Consensus 353 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~ 432 (546)
+|++.|.+++.- +|.....-.++|.||+++.-|+-+-+.+.--+.. .|+...+.+..+...++.
T Consensus 169 eAIdvYkrvL~d--------n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--------~pdStiA~NLkacn~fRl 232 (557)
T KOG3785|consen 169 EAIDVYKRVLQD--------NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--------FPDSTIAKNLKACNLFRL 232 (557)
T ss_pred HHHHHHHHHHhc--------ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--------CCCcHHHHHHHHHHHhhh
Confidence 777777666644 3666666666777777777776666655555444 455555555555555443
No 138
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.75 E-value=5.4e-08 Score=72.01 Aligned_cols=66 Identities=33% Similarity=0.511 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhh
Q psy597 377 AKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQG-KYKEAEILYKQVLTRAH 450 (546)
Q Consensus 377 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g-~~~eA~~~~~~al~~~~ 450 (546)
+.++..+|.++...|++++|+.+|.+++++ +|..+.+++++|.+|..+| ++++|+..+++++++.|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 568899999999999999999999999999 8999999999999999999 79999999999998743
No 139
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.75 E-value=3.1e-07 Score=75.16 Aligned_cols=102 Identities=34% Similarity=0.323 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHH
Q psy597 216 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATM 295 (546)
Q Consensus 216 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 295 (546)
++++.+|.++-..|+.++|+++|++++.. +.+.+....+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----------------------------------------gL~~~~~~~a 40 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAA-----------------------------------------GLSGADRRRA 40 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHc-----------------------------------------CCCchHHHHH
Confidence 56889999999999999999999999884 4456677789
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 296 LNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALE 363 (546)
Q Consensus 296 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 363 (546)
+..+|..+...|++++|+..+++++..+ ++++........++.++...|++++|+..+-.++.
T Consensus 41 ~i~lastlr~LG~~deA~~~L~~~~~~~-----p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 41 LIQLASTLRNLGRYDEALALLEEALEEF-----PDDELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999998754 44444566677788999999999999999988774
No 140
>KOG1585|consensus
Probab=98.74 E-value=1.4e-05 Score=71.40 Aligned_cols=193 Identities=15% Similarity=0.120 Sum_probs=146.3
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCCh
Q psy597 211 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHP 290 (546)
Q Consensus 211 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 290 (546)
....+..|..-+.+|....+|++|...+.+|.+..+... ...
T Consensus 27 ~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnr--------------------------------------slf 68 (308)
T KOG1585|consen 27 WDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNR--------------------------------------SLF 68 (308)
T ss_pred chhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcc--------------------------------------cHH
Confidence 345567788888899999999999999999998665543 345
Q ss_pred hHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q psy597 291 DVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 370 (546)
Q Consensus 291 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 370 (546)
..+.++-..|.+......+.++..+|++|..++.+. +.....+.++-. +--....-++++|+.+|++++.+.+..
T Consensus 69 hAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~--GspdtAAmaleK-Aak~lenv~Pd~AlqlYqralavve~~-- 143 (308)
T KOG1585|consen 69 HAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVEC--GSPDTAAMALEK-AAKALENVKPDDALQLYQRALAVVEED-- 143 (308)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh--CCcchHHHHHHH-HHHHhhcCCHHHHHHHHHHHHHHHhcc--
Confidence 566778888888889999999999999999999886 332233444444 444456679999999999999998653
Q ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 371 KEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 371 ~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
+........+...+.++....+|++|-..+.+-..+.... ...+.....+.....+|+-..+|..|..+|+..-++
T Consensus 144 dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~--~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi 219 (308)
T KOG1585|consen 144 DRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKC--DAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI 219 (308)
T ss_pred chHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHH--hhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC
Confidence 2234455667778899999999999999998877776555 224445556666777788888999999999887654
No 141
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.73 E-value=7.1e-08 Score=75.67 Aligned_cols=97 Identities=42% Similarity=0.548 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q psy597 337 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDS 416 (546)
Q Consensus 337 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~ 416 (546)
++..+|.++...|++++|+.++.+++... |....++..+|.++...|++++|+.+|++++.. .|
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--------~~ 65 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD--------PDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--------DP 65 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC--------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CC
Confidence 57889999999999999999999999874 445578899999999999999999999999987 45
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q psy597 417 NVAKTKNNLASCYLKQGKYKEAEILYKQVLTRA 449 (546)
Q Consensus 417 ~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~ 449 (546)
....++..+|.++...|++++|..++.+++...
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 66 DNAKAYYNLGLAYYKLGKYEEALEAYEKALELD 98 (100)
T ss_pred cchhHHHHHHHHHHHHHhHHHHHHHHHHHHccC
Confidence 555789999999999999999999999988753
No 142
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.73 E-value=4.4e-07 Score=74.26 Aligned_cols=102 Identities=28% Similarity=0.203 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q psy597 294 TMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEH 373 (546)
Q Consensus 294 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 373 (546)
.+++.+|.++...|+.++|+.+|++++.. |.+.+....++..+|..+...|++++|+..+++++... +++
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-----p~~ 71 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-----PDD 71 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCc
Confidence 46788999999999999999999999874 34556667889999999999999999999999988764 333
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 374 PDVAKQLNNLALLCQNQSKYEEVERYYQRALE 405 (546)
Q Consensus 374 ~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 405 (546)
+........++.++...|++++|+..+-.++.
T Consensus 72 ~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 72 ELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33666677788899999999999998877765
No 143
>KOG2047|consensus
Probab=98.73 E-value=3.6e-06 Score=84.84 Aligned_cols=213 Identities=15% Similarity=0.179 Sum_probs=151.3
Q ss_pred hhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--
Q psy597 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK-- 367 (546)
Q Consensus 290 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-- 367 (546)
......|...|..|...|+.+.|...|+++...-= +.-...+.+|...|..-....+++.|..+.++|...-..
T Consensus 384 Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y----~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~ 459 (835)
T KOG2047|consen 384 GSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPY----KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPE 459 (835)
T ss_pred CChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc----cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchh
Confidence 34567888999999999999999999999987621 113456889999999999999999999999998754211
Q ss_pred --hcCCCChHH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHH
Q psy597 368 --VLGKEHPDV------AKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAE 439 (546)
Q Consensus 368 --~~~~~~~~~------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~ 439 (546)
.+.+.+|.. ..+|..++.+....|-++.-...|++.+++ ....+....|.|..+....-+++|.
T Consensus 460 ~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidL--------riaTPqii~NyAmfLEeh~yfeesF 531 (835)
T KOG2047|consen 460 LEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDL--------RIATPQIIINYAMFLEEHKYFEESF 531 (835)
T ss_pred hhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--------hcCCHHHHHHHHHHHHhhHHHHHHH
Confidence 112223332 345666677777888888888889998887 4455667788888888888899999
Q ss_pred HHHHHHHHhhhhcccCcccCCChhhHH--------HHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHHHH
Q psy597 440 ILYKQVLTRAHEREFGACDGDNKPIWQ--------DRQKNKAKNREKYYQRALEIYELKLGPDDSNVAK-TKNNLASCYL 510 (546)
Q Consensus 440 ~~~~~al~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~-~~~~La~~y~ 510 (546)
+.|++.+.+++-.. ..-.|. -....+.+.|...|++|++.+ .|.... .+...+.+-.
T Consensus 532 k~YErgI~LFk~p~-------v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~C-------pp~~aKtiyLlYA~lEE 597 (835)
T KOG2047|consen 532 KAYERGISLFKWPN-------VYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGC-------PPEHAKTIYLLYAKLEE 597 (835)
T ss_pred HHHHcCCccCCCcc-------HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHHHH
Confidence 99999888765321 122222 223345667777777777642 344433 4445566666
Q ss_pred HcCCHHHHHHHHHHHHHH
Q psy597 511 KQGKYKEAEILYKQVLTR 528 (546)
Q Consensus 511 ~~g~~~~A~~~~~~al~~ 528 (546)
.-|--..|+..|++|-..
T Consensus 598 e~GLar~amsiyerat~~ 615 (835)
T KOG2047|consen 598 EHGLARHAMSIYERATSA 615 (835)
T ss_pred HhhHHHHHHHHHHHHHhc
Confidence 778888888888876543
No 144
>KOG1839|consensus
Probab=98.71 E-value=4e-07 Score=99.10 Aligned_cols=200 Identities=22% Similarity=0.218 Sum_probs=180.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHH
Q psy597 214 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVA 293 (546)
Q Consensus 214 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 293 (546)
...-....|......|.+.+|.+ ..+++..+.... +..++..+
T Consensus 931 ~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~------------------------------------~~~h~~~~ 973 (1236)
T KOG1839|consen 931 EAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVM------------------------------------GVLHPEVA 973 (1236)
T ss_pred hhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhh------------------------------------hhcchhHH
Confidence 34455666777778889998888 777777766555 55789999
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q psy597 294 TMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEH 373 (546)
Q Consensus 294 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 373 (546)
..+..++.++...|++++|+..-.++.-+.++..|.+++.....+.+++...+..++...|...+.++..+..-.+|+++
T Consensus 974 ~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~h 1053 (1236)
T KOG1839|consen 974 SKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDH 1053 (1236)
T ss_pred HHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888889999
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q psy597 374 PDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAH 450 (546)
Q Consensus 374 ~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~ 450 (546)
|..+....+++.++...++++.|+++.+.|+.+.....++..-..+.++..++..+...+++..|....+....++.
T Consensus 1054 P~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~ 1130 (1236)
T KOG1839|consen 1054 PPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGIYK 1130 (1236)
T ss_pred CchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHH
Confidence 99999999999999999999999999999999999999888888999999999999999999999988888877544
No 145
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.71 E-value=1.6e-07 Score=72.52 Aligned_cols=83 Identities=30% Similarity=0.386 Sum_probs=68.5
Q ss_pred hhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q psy597 306 QNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLAL 385 (546)
Q Consensus 306 ~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 385 (546)
+|+|+.|+.+|++++...+ ..+ ....++.+|.+|+..|+|++|+.++++ .... +........+|.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~-----~~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--------~~~~~~~~l~a~ 66 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDP-----TNP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--------PSNPDIHYLLAR 66 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHC-----GTH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--------HCHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCC-----CCh-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--------CCCHHHHHHHHH
Confidence 6899999999999999852 223 566788899999999999999999999 5443 555677778899
Q ss_pred HHHHcCCHHHHHHHHHHH
Q psy597 386 LCQNQSKYEEVERYYQRA 403 (546)
Q Consensus 386 ~~~~~g~~~eA~~~~~~a 403 (546)
++..+|++++|+..|+++
T Consensus 67 ~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 67 CLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHTT-HHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHhcC
Confidence 999999999999999875
No 146
>KOG1586|consensus
Probab=98.70 E-value=7.2e-06 Score=72.78 Aligned_cols=157 Identities=20% Similarity=0.222 Sum_probs=122.2
Q ss_pred CCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy597 287 HDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE 366 (546)
Q Consensus 287 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 366 (546)
....+.+..+..-|..|....++..|-..|.++.+...+. ++....+.+|...+.+|.+ +++.+|+.+++++++++.
T Consensus 28 ~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~--~skhDaat~YveA~~cykk-~~~~eAv~cL~~aieIyt 104 (288)
T KOG1586|consen 28 NKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKA--GSKHDAATTYVEAANCYKK-VDPEEAVNCLEKAIEIYT 104 (288)
T ss_pred cchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHH
Confidence 3456677888888999999999999999999999988776 4555567777777777755 599999999999999985
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy597 367 KVLGKEHPDVAKQLNNLALLCQNQ-SKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQV 445 (546)
Q Consensus 367 ~~~~~~~~~~~~~~~~la~~~~~~-g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~a 445 (546)
.. +.-...+.-+..+|.+|... .++++|+.+|+++-+.+..- ......-.++...|..-...++|.+|+..|+++
T Consensus 105 ~~--Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e--es~ssANKC~lKvA~yaa~leqY~~Ai~iyeqv 180 (288)
T KOG1586|consen 105 DM--GRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE--ESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQV 180 (288)
T ss_pred hh--hHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54 22233455567899999865 89999999999999987643 112334456677777788899999999999998
Q ss_pred HHhhh
Q psy597 446 LTRAH 450 (546)
Q Consensus 446 l~~~~ 450 (546)
....-
T Consensus 181 a~~s~ 185 (288)
T KOG1586|consen 181 ARSSL 185 (288)
T ss_pred HHHhc
Confidence 77543
No 147
>KOG0543|consensus
Probab=98.69 E-value=4.4e-07 Score=87.32 Aligned_cols=143 Identities=23% Similarity=0.274 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENH-------AAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 364 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 364 (546)
.+......|..|+..|+|..|...|++|+.......+.+. .....++.|++.++.++++|.+|+..+.++|++
T Consensus 207 ~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~ 286 (397)
T KOG0543|consen 207 AADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL 286 (397)
T ss_pred HHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 3455667799999999999999999999998764322221 123467999999999999999999999999999
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHH-HHHHH
Q psy597 365 REKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEA-EILYK 443 (546)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA-~~~~~ 443 (546)
.|....+++..|.++...|+|+.|+..|++++++ .|.+-.+...|..+..+..++.+. .+.|.
T Consensus 287 --------~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--------~P~Nka~~~el~~l~~k~~~~~~kekk~y~ 350 (397)
T KOG0543|consen 287 --------DPNNVKALYRRGQALLALGEYDLARDDFQKALKL--------EPSNKAARAELIKLKQKIREYEEKEKKMYA 350 (397)
T ss_pred --------CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4888999999999999999999999999999999 788888888888888777766544 78888
Q ss_pred HHHHhhh
Q psy597 444 QVLTRAH 450 (546)
Q Consensus 444 ~al~~~~ 450 (546)
.++....
T Consensus 351 ~mF~k~~ 357 (397)
T KOG0543|consen 351 NMFAKLA 357 (397)
T ss_pred HHhhccc
Confidence 8887654
No 148
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.68 E-value=1.6e-07 Score=73.56 Aligned_cols=98 Identities=39% Similarity=0.526 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCccc
Q psy597 379 QLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACD 458 (546)
Q Consensus 379 ~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~ 458 (546)
++.++|.++...|++++|+..++++++. .|....++..+|.++...|++++|+.+++.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------- 64 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALEL--------DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD--------- 64 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---------
Confidence 4678999999999999999999999987 45555788999999999999999999999888752
Q ss_pred CCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q psy597 459 GDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAH 530 (546)
Q Consensus 459 ~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~ 530 (546)
|....++..+|.++...|++++|..++.++++..|
T Consensus 65 -------------------------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 65 -------------------------------------PDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred -------------------------------------CcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 22336778899999999999999999999987654
No 149
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.68 E-value=1.4e-07 Score=69.81 Aligned_cols=64 Identities=31% Similarity=0.518 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHH
Q psy597 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQS-KYEEVERYYQRALEI 406 (546)
Q Consensus 335 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~eA~~~~~~al~~ 406 (546)
+.++..+|.++...|+|++|+.+|.+++++ +|....+++++|.++..+| ++++|+.++++++++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 568999999999999999999999999999 4889999999999999999 799999999999997
No 150
>KOG1915|consensus
Probab=98.67 E-value=0.0001 Score=72.09 Aligned_cols=305 Identities=14% Similarity=0.096 Sum_probs=185.4
Q ss_pred hhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-------------CchhHHHhhHHHHHhhhhhhHH
Q psy597 205 VNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTS-------------GKYEAAETLEDCALRSRKESYD 271 (546)
Q Consensus 205 ~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-------------~~~~~a~~~~~~~l~~~~~~~~ 271 (546)
..+...+..+...|...+.+-+.......|..++.+|+.++|+.. |....+..++...+...++...
T Consensus 97 ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqa 176 (677)
T KOG1915|consen 97 ERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQA 176 (677)
T ss_pred HHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHH
Confidence 334444456667888888888888888999999999988877654 4555566666555543333222
Q ss_pred HHHHH----------HHHHHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy597 272 IVKQA----------KVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNL 341 (546)
Q Consensus 272 ~~~~~----------~~~~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~l 341 (546)
..... .+..++.+-.-.||.. ..|...+..-...|+..-|...|+.|++.. .++......+...
T Consensus 177 W~sfI~fElRykeieraR~IYerfV~~HP~v-~~wikyarFE~k~g~~~~aR~VyerAie~~-----~~d~~~e~lfvaF 250 (677)
T KOG1915|consen 177 WLSFIKFELRYKEIERARSIYERFVLVHPKV-SNWIKYARFEEKHGNVALARSVYERAIEFL-----GDDEEAEILFVAF 250 (677)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHheecccH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-----hhHHHHHHHHHHH
Confidence 21111 1112222223345544 457777888888999999999999999886 3344444555566
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHH---------------HHhcCC---------------------CChHHHHHHHHHHH
Q psy597 342 AVLYGKRGKYKEAEPLCKRALEIR---------------EKVLGK---------------------EHPDVAKQLNNLAL 385 (546)
Q Consensus 342 a~~~~~~g~~~~A~~~~~~al~~~---------------~~~~~~---------------------~~~~~~~~~~~la~ 385 (546)
|..-..+..++.|...|+-|++.. ++.+|+ ++|....+|..+-.
T Consensus 251 A~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylr 330 (677)
T KOG1915|consen 251 AEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLR 330 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHH
Confidence 666667777888888777776542 222222 24555566666666
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh-----HHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhhhhcccCcccC
Q psy597 386 LCQNQSKYEEVERYYQRALEIYELKLGPDDS-----NVAKTKNNLASC-YLKQGKYKEAEILYKQVLTRAHEREFGACDG 459 (546)
Q Consensus 386 ~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~-----~~~~~~~~La~~-y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~ 459 (546)
+-...|+.+.-.+.|++|+.-. +|-.. .....|.|.+.. -+...+.+.+...|+.++++.|...+.-...
T Consensus 331 L~e~~g~~~~Ire~yErAIanv----pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKi 406 (677)
T KOG1915|consen 331 LEESVGDKDRIRETYERAIANV----PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKI 406 (677)
T ss_pred HHHhcCCHHHHHHHHHHHHccC----CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHH
Confidence 6677788888888888887641 00000 111222222211 1245666677777777776655433221111
Q ss_pred CC---------------------------------hhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q psy597 460 DN---------------------------------KPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLA 506 (546)
Q Consensus 460 ~~---------------------------------~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La 506 (546)
.. ..+-.....+.++.....|++-+.. +|....++...|
T Consensus 407 WlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~--------~Pe~c~~W~kya 478 (677)
T KOG1915|consen 407 WLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF--------SPENCYAWSKYA 478 (677)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------ChHhhHHHHHHH
Confidence 10 1111133445555555555555544 788888999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q psy597 507 SCYLKQGKYKEAEILYKQVLT 527 (546)
Q Consensus 507 ~~y~~~g~~~~A~~~~~~al~ 527 (546)
.+-..+|+.+.|...|+-|+.
T Consensus 479 ElE~~LgdtdRaRaifelAi~ 499 (677)
T KOG1915|consen 479 ELETSLGDTDRARAIFELAIS 499 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHhc
Confidence 999999999999999998876
No 151
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.66 E-value=1.2e-06 Score=85.88 Aligned_cols=153 Identities=24% Similarity=0.218 Sum_probs=130.8
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChh
Q psy597 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPD 291 (546)
Q Consensus 212 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (546)
|....+++..+..++..|++++|...+...+. ..|+
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~--------------------------------------------~~P~ 338 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIA--------------------------------------------AQPD 338 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHH--------------------------------------------hCCC
Confidence 67778899999999999999999999998766 5677
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 371 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 371 (546)
.+..+...+.++...++..+|.+.+++++... |.......++|.+|...|++++|+..+.+.+..
T Consensus 339 N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--------P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~------- 403 (484)
T COG4783 339 NPYYLELAGDILLEANKAKEAIERLKKALALD--------PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN------- 403 (484)
T ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--------CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc-------
Confidence 78888899999999999999999999999883 444677899999999999999999999998766
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q psy597 372 EHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRA 449 (546)
Q Consensus 372 ~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~ 449 (546)
.|..+..|..||..|..+|+..+|...+ +..|...|+++.|+..+..+.+..
T Consensus 404 -~p~dp~~w~~LAqay~~~g~~~~a~~A~-------------------------AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 404 -DPEDPNGWDLLAQAYAELGNRAEALLAR-------------------------AEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred -CCCCchHHHHHHHHHHHhCchHHHHHHH-------------------------HHHHHhCCCHHHHHHHHHHHHHhc
Confidence 4888999999999999999877665444 455666888888888888887753
No 152
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.65 E-value=2.1e-05 Score=75.36 Aligned_cols=217 Identities=12% Similarity=0.032 Sum_probs=139.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHH
Q psy597 215 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVAT 294 (546)
Q Consensus 215 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 294 (546)
.-++..-+...-..|+++.|-.++.++-+. . ......
T Consensus 118 ~l~~l~aA~AA~qrgd~~~an~yL~eaae~------------------------------------------~-~~~~l~ 154 (400)
T COG3071 118 VLAYLLAAEAAQQRGDEDRANRYLAEAAEL------------------------------------------A-GDDTLA 154 (400)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHhcc------------------------------------------C-CCchHH
Confidence 345555566667777777777777766552 1 122233
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH---------
Q psy597 295 MLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR--------- 365 (546)
Q Consensus 295 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------- 365 (546)
+...++.+....|+++.|..-..+++.. .|....++.....+|...|+|.....+..+..+..
T Consensus 155 v~ltrarlll~~~d~~aA~~~v~~ll~~--------~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~ 226 (400)
T COG3071 155 VELTRARLLLNRRDYPAARENVDQLLEM--------TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR 226 (400)
T ss_pred HHHHHHHHHHhCCCchhHHHHHHHHHHh--------CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH
Confidence 4556667777777777777777777665 33335556666677777777776666655432210
Q ss_pred ----------HHhcC-C----------CCh----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---------Hhc
Q psy597 366 ----------EKVLG-K----------EHP----DVAKQLNNLALLCQNQSKYEEVERYYQRALEIYE---------LKL 411 (546)
Q Consensus 366 ----------~~~~~-~----------~~~----~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~---------~~~ 411 (546)
.+... . +-| ..+.....++.-+...|++++|.+..+++++... ...
T Consensus 227 le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~ 306 (400)
T COG3071 227 LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLR 306 (400)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcC
Confidence 00000 0 001 1133445567777889999999999988876321 000
Q ss_pred C--------------CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHH
Q psy597 412 G--------------PDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNRE 477 (546)
Q Consensus 412 ~--------------~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 477 (546)
+ ..+|+.+..+..||.+|++.+.|.+|..+|+.+++..++. ......+..+...|+...|.
T Consensus 307 ~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~-----~~~~~la~~~~~~g~~~~A~ 381 (400)
T COG3071 307 PGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSA-----SDYAELADALDQLGEPEEAE 381 (400)
T ss_pred CCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh-----hhHHHHHHHHHHcCChHHHH
Confidence 0 1144556788999999999999999999999999864432 34455667788999999999
Q ss_pred HHHHHHHHHH
Q psy597 478 KYYQRALEIY 487 (546)
Q Consensus 478 ~~~~~Al~~~ 487 (546)
..+++++..+
T Consensus 382 ~~r~e~L~~~ 391 (400)
T COG3071 382 QVRREALLLT 391 (400)
T ss_pred HHHHHHHHHh
Confidence 9999998553
No 153
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.65 E-value=8.5e-08 Score=92.05 Aligned_cols=237 Identities=22% Similarity=0.204 Sum_probs=139.7
Q ss_pred CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCC
Q psy597 210 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDH 289 (546)
Q Consensus 210 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 289 (546)
..+........+.++|..+|+++..+.-.. ......-.+...+...+.......... ........ ....
T Consensus 30 ~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~-------~~~~~~l~av~~la~y~~~~~~~e~~l---~~l~~~~~-~~~~ 98 (290)
T PF04733_consen 30 SPENKLERDFYQYRSYIALGQYDSVLSEIK-------KSSSPELQAVRLLAEYLSSPSDKESAL---EELKELLA-DQAG 98 (290)
T ss_dssp TCHHHHHHHHHHHHHHHHTT-HHHHHHHS--------TTSSCCCHHHHHHHHHHCTSTTHHCHH---HHHHHCCC-TS--
T ss_pred CchhHHHHHHHHHHHHHHcCChhHHHHHhc-------cCCChhHHHHHHHHHHHhCccchHHHH---HHHHHHHH-hccc
Confidence 345567788888999999999876554331 112222223222222222111111111 11111111 1112
Q ss_pred hhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q psy597 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 369 (546)
Q Consensus 290 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 369 (546)
.....+....|.++...|++++|+..+.+.- + ..+......+|...++++.|.+.++.+.+.
T Consensus 99 ~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~~----------~---lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~----- 160 (290)
T PF04733_consen 99 ESNEIVQLLAATILFHEGDYEEALKLLHKGG----------S---LELLALAVQILLKMNRPDLAEKELKNMQQI----- 160 (290)
T ss_dssp -CHHHHHHHHHHHHCCCCHHHHHHCCCTTTT----------C---HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-----
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHccC----------c---ccHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----
Confidence 2334556677888888999999988886541 1 344556678899999999999888876544
Q ss_pred CCCChHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 370 GKEHPDVAKQLNNLALLCQNQS--KYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 447 (546)
Q Consensus 370 ~~~~~~~~~~~~~la~~~~~~g--~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~ 447 (546)
..+...+....+++....| ++.+|..+|++..+. .+..+.+++.+|.++..+|+|++|...+.+++.
T Consensus 161 ---~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~--------~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~ 229 (290)
T PF04733_consen 161 ---DEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK--------FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE 229 (290)
T ss_dssp ---SCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC--------S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC
T ss_pred ---CCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc--------cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 2334444444555555555 689999999886443 345667788999999999999999999888876
Q ss_pred hhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHH
Q psy597 448 RAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKY-KEAEILYKQVL 526 (546)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~-~~A~~~~~~al 526 (546)
. +|..+.++.+++.+....|+. +.+.+++.+..
T Consensus 230 ~----------------------------------------------~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 230 K----------------------------------------------DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp C-----------------------------------------------CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred h----------------------------------------------ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 4 344455666677776777766 44555665555
Q ss_pred HHhhhh
Q psy597 527 TRAHER 532 (546)
Q Consensus 527 ~~~~~~ 532 (546)
...|..
T Consensus 264 ~~~p~h 269 (290)
T PF04733_consen 264 QSNPNH 269 (290)
T ss_dssp HHTTTS
T ss_pred HhCCCC
Confidence 555443
No 154
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.65 E-value=6.8e-07 Score=84.31 Aligned_cols=103 Identities=13% Similarity=0.160 Sum_probs=91.5
Q ss_pred HHHHHHHHHH-HHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q psy597 294 TMLNILALVY-RDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKE 372 (546)
Q Consensus 294 ~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 372 (546)
...+..|..+ ...|+|++|+..|++.+..+ ++++....+++.+|.+|+..|++++|+..|.+++..+ ++
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-----P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-----P~ 212 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY-----PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-----PK 212 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CC
Confidence 4456666655 56799999999999999987 5567778899999999999999999999999999987 66
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 373 HPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406 (546)
Q Consensus 373 ~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 406 (546)
++....+++.+|.++...|++++|...|+++++.
T Consensus 213 s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 213 SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999987
No 155
>KOG1128|consensus
Probab=98.65 E-value=2.5e-07 Score=94.44 Aligned_cols=200 Identities=21% Similarity=0.201 Sum_probs=153.8
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCCh
Q psy597 211 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHP 290 (546)
Q Consensus 211 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 290 (546)
.-.++..|-....||...|+..+|..+..+-++. ... +. ....+...........++... ...
T Consensus 420 I~Erlemw~~vi~CY~~lg~~~kaeei~~q~lek--~~d-----~~--lyc~LGDv~~d~s~yEkawEl--------sn~ 482 (777)
T KOG1128|consen 420 IFERLEMWDPVILCYLLLGQHGKAEEINRQELEK--DPD-----PR--LYCLLGDVLHDPSLYEKAWEL--------SNY 482 (777)
T ss_pred HHHhHHHHHHHHHHHHHhcccchHHHHHHHHhcC--CCc-----ch--hHHHhhhhccChHHHHHHHHH--------hhh
Confidence 3456778888889999999999998888777761 111 01 111111111111111111111 123
Q ss_pred hHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q psy597 291 DVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 370 (546)
Q Consensus 291 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 370 (546)
..+.+...+|......++|.++..+++.++++ .|....+|+.+|.+..+.++++.|...|.+.+.+
T Consensus 483 ~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~--------nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL------ 548 (777)
T KOG1128|consen 483 ISARAQRSLALLILSNKDFSEADKHLERSLEI--------NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL------ 548 (777)
T ss_pred hhHHHHHhhccccccchhHHHHHHHHHHHhhc--------CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc------
Confidence 34456677777778899999999999999988 5777899999999999999999999999999998
Q ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q psy597 371 KEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAH 450 (546)
Q Consensus 371 ~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~ 450 (546)
.|+.+.+|+|++..|...|+-.+|...+++|++. +......|-|.-.+....|.+++|+..|.+.+.+..
T Consensus 549 --~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc--------n~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 549 --EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC--------NYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred --CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc--------CCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence 4999999999999999999999999999999997 455667788888889999999999999999998754
Q ss_pred h
Q psy597 451 E 451 (546)
Q Consensus 451 ~ 451 (546)
.
T Consensus 619 ~ 619 (777)
T KOG1128|consen 619 K 619 (777)
T ss_pred h
Confidence 4
No 156
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.63 E-value=2.5e-06 Score=74.79 Aligned_cols=207 Identities=18% Similarity=0.174 Sum_probs=142.6
Q ss_pred CCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy597 286 GHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 365 (546)
Q Consensus 286 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 365 (546)
.-.+...+..++..|..|-..|-+.-|..-|.+++.+ .|..+.+++.+|..+...|+|+.|.+.|...+++
T Consensus 58 ~l~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai--------~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL- 128 (297)
T COG4785 58 ALTDEERAQLLFERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL- 128 (297)
T ss_pred cCChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhc--------CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc-
Confidence 4456778899999999999999999999999999998 4666889999999999999999999999999998
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy597 366 EKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQV 445 (546)
Q Consensus 366 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~a 445 (546)
+|..-.+..|.|..++.-|+|.-|.+-+.+-... .+++|... .|..+- ...-++.+|...+.+-
T Consensus 129 -------Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~-----D~~DPfR~-LWLYl~---E~k~dP~~A~tnL~qR 192 (297)
T COG4785 129 -------DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD-----DPNDPFRS-LWLYLN---EQKLDPKQAKTNLKQR 192 (297)
T ss_pred -------CCcchHHHhccceeeeecCchHhhHHHHHHHHhc-----CCCChHHH-HHHHHH---HhhCCHHHHHHHHHHH
Confidence 5888889999999999999999999887766553 13333322 121111 2334667777655443
Q ss_pred HHhhhhcccCcccCCChhhHH--HHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy597 446 LTRAHEREFGACDGDNKPIWQ--DRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYK 523 (546)
Q Consensus 446 l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~ 523 (546)
.....+. ..+|. ....|+... ...++++....+.. ..-.....++++.||..|...|+.++|..+|+
T Consensus 193 ~~~~d~e---------~WG~~iV~~yLgkiS~-e~l~~~~~a~a~~n-~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfK 261 (297)
T COG4785 193 AEKSDKE---------QWGWNIVEFYLGKISE-ETLMERLKADATDN-TSLAEHLTETYFYLGKYYLSLGDLDEATALFK 261 (297)
T ss_pred HHhccHh---------hhhHHHHHHHHhhccH-HHHHHHHHhhccch-HHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 3221111 12222 222333321 11222222221100 00023456789999999999999999999999
Q ss_pred HHHHH
Q psy597 524 QVLTR 528 (546)
Q Consensus 524 ~al~~ 528 (546)
-|+.-
T Consensus 262 Laian 266 (297)
T COG4785 262 LAVAN 266 (297)
T ss_pred HHHHH
Confidence 88763
No 157
>KOG1915|consensus
Probab=98.59 E-value=1.3e-05 Score=78.24 Aligned_cols=254 Identities=11% Similarity=0.117 Sum_probs=178.2
Q ss_pred hhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhc
Q psy597 204 QVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILG 283 (546)
Q Consensus 204 ~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 283 (546)
.......+|.+-.+|+..-..--..|+.+.-...|++|+...+...
T Consensus 311 YE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~---------------------------------- 356 (677)
T KOG1915|consen 311 YEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPAS---------------------------------- 356 (677)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchh----------------------------------
Confidence 3445567788888999988888889999999999999987533221
Q ss_pred cCCCCChhHHHHHHHHHHHHH---HhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy597 284 SGGHDHPDVATMLNILALVYR---DQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKR 360 (546)
Q Consensus 284 ~~~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 360 (546)
......-.+|..+-.+++ ...+.+.+...|+.++++.+.. +-..+.+|...|....+..+...|...+-.
T Consensus 357 ---ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHk----kFtFaKiWlmyA~feIRq~~l~~ARkiLG~ 429 (677)
T KOG1915|consen 357 ---EKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHK----KFTFAKIWLMYAQFEIRQLNLTGARKILGN 429 (677)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcc----cchHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 011112223333333333 3578899999999999986432 556788899999999999999999999999
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHH
Q psy597 361 ALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEI 440 (546)
Q Consensus 361 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~ 440 (546)
|+..+ |. ...+-..-.+-.++++++.....|++-++. +|....+|...|.+-..+|+.+.|..
T Consensus 430 AIG~c--------PK-~KlFk~YIelElqL~efDRcRkLYEkfle~--------~Pe~c~~W~kyaElE~~LgdtdRaRa 492 (677)
T KOG1915|consen 430 AIGKC--------PK-DKLFKGYIELELQLREFDRCRKLYEKFLEF--------SPENCYAWSKYAELETSLGDTDRARA 492 (677)
T ss_pred HhccC--------Cc-hhHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------ChHhhHHHHHHHHHHHHhhhHHHHHH
Confidence 99886 32 233344445666788999999999999988 99999999999999999999999999
Q ss_pred HHHHHHHhhhhcccCcccCCChhhHH-------HHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH---
Q psy597 441 LYKQVLTRAHEREFGACDGDNKPIWQ-------DRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYL--- 510 (546)
Q Consensus 441 ~~~~al~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~--- 510 (546)
.|.-|+.... ....... ....|.+..|...|++.++. .+ ...++...|..-.
T Consensus 493 ifelAi~qp~---------ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--------t~-h~kvWisFA~fe~s~~ 554 (677)
T KOG1915|consen 493 IFELAISQPA---------LDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--------TQ-HVKVWISFAKFEASAS 554 (677)
T ss_pred HHHHHhcCcc---------cccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--------cc-cchHHHhHHHHhcccc
Confidence 9998887421 1111122 34455555666666555543 11 1224444443333
Q ss_pred --HcC-----------CHHHHHHHHHHHHHHhhhhc
Q psy597 511 --KQG-----------KYKEAEILYKQVLTRAHERE 533 (546)
Q Consensus 511 --~~g-----------~~~~A~~~~~~al~~~~~~~ 533 (546)
..| +...|...|++|....++..
T Consensus 555 ~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~ 590 (677)
T KOG1915|consen 555 EGQEDEDLAELEITDENIKRARKIFERANTYLKEST 590 (677)
T ss_pred ccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcC
Confidence 445 67788888888888776543
No 158
>KOG4340|consensus
Probab=98.57 E-value=3.7e-06 Score=77.20 Aligned_cols=170 Identities=17% Similarity=0.146 Sum_probs=120.6
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
..|.....+..+|.+|+...+|..|..+|++.-.. .|.........+..++..+.+..|+.........
T Consensus 39 r~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--------~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~--- 107 (459)
T KOG4340|consen 39 RSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--------HPELEQYRLYQAQSLYKACIYADALRVAFLLLDN--- 107 (459)
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------ChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---
Confidence 34555566888899999999999999999887766 5666777777888888888988888776655432
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 368 VLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 447 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~ 447 (546)
+.....+...-+-+.+..+++..+....++.- ..+.+.+..+.|.+.++.|+++.|+.-|+.+++
T Consensus 108 -----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp----------~en~Ad~~in~gCllykegqyEaAvqkFqaAlq 172 (459)
T KOG4340|consen 108 -----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP----------SENEADGQINLGCLLYKEGQYEAAVQKFQAALQ 172 (459)
T ss_pred -----HHHHHHHHHHHHHHhcccccCcchHHHHHhcc----------CCCccchhccchheeeccccHHHHHHHHHHHHh
Confidence 12233444455666677777777665554321 124567788889899999999999988888887
Q ss_pred hhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 448 RAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 527 (546)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~ 527 (546)
.. ...+-.-++++.++++.|+++.|+++..+.++
T Consensus 173 vs----------------------------------------------GyqpllAYniALaHy~~~qyasALk~iSEIie 206 (459)
T KOG4340|consen 173 VS----------------------------------------------GYQPLLAYNLALAHYSSRQYASALKHISEIIE 206 (459)
T ss_pred hc----------------------------------------------CCCchhHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 41 11223446788888888888888888777766
Q ss_pred Hh
Q psy597 528 RA 529 (546)
Q Consensus 528 ~~ 529 (546)
..
T Consensus 207 RG 208 (459)
T KOG4340|consen 207 RG 208 (459)
T ss_pred hh
Confidence 44
No 159
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.55 E-value=3.4e-05 Score=70.43 Aligned_cols=186 Identities=22% Similarity=0.237 Sum_probs=131.5
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 371 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 371 (546)
-+..++.-|......|+|++|+..|+.+.... +..|....+...++.++++.+++++|+...++-+... +
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~-----p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly-----P 102 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRH-----PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY-----P 102 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-----C
Confidence 46678999999999999999999999988654 5567778899999999999999999999999999997 7
Q ss_pred CChHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH--------------HHHHHHHc
Q psy597 372 EHPDVAKQLNNLALLCQNQ-----SKYEEVERYYQRALEIYELKLGPDDSNVAKTKNN--------------LASCYLKQ 432 (546)
Q Consensus 372 ~~~~~~~~~~~la~~~~~~-----g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~--------------La~~y~~~ 432 (546)
.||+...+++..|.+++.. .|...+...+...-++..+. |+++....+... +|..|.+.
T Consensus 103 ~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry--PnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr 180 (254)
T COG4105 103 THPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY--PNSRYAPDAKARIVKLNDALAGHEMAIARYYLKR 180 (254)
T ss_pred CCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC--CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7899999999999987652 34444444444444443333 444444433332 34444455
Q ss_pred CCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHc
Q psy597 433 GKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ 512 (546)
Q Consensus 433 g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~ 512 (546)
|.+-.|+..++.+++ -+ ++.+....++..+..+|...
T Consensus 181 ~~~~AA~nR~~~v~e--------------------------------------~y-----~~t~~~~eaL~~l~eaY~~l 217 (254)
T COG4105 181 GAYVAAINRFEEVLE--------------------------------------NY-----PDTSAVREALARLEEAYYAL 217 (254)
T ss_pred cChHHHHHHHHHHHh--------------------------------------cc-----ccccchHHHHHHHHHHHHHh
Confidence 555555444444444 32 22456677888899999999
Q ss_pred CCHHHHHHHHHHHHHHhhhh
Q psy597 513 GKYKEAEILYKQVLTRAHER 532 (546)
Q Consensus 513 g~~~~A~~~~~~al~~~~~~ 532 (546)
|-.++|...-.-.-.-.|+.
T Consensus 218 gl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 218 GLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred CChHHHHHHHHHHHhcCCCC
Confidence 99999987655433333333
No 160
>KOG0543|consensus
Probab=98.54 E-value=2.4e-06 Score=82.32 Aligned_cols=108 Identities=22% Similarity=0.185 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC-------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy597 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEH-------PDVAKQLNNLALLCQNQSKYEEVERYYQRALEIY 407 (546)
Q Consensus 335 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 407 (546)
+.....-|..|++.|+|..|...|++++.......+.+. .....++.|++.++.++++|.+|+....++|.+
T Consensus 208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~- 286 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL- 286 (397)
T ss_pred HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc-
Confidence 445567789999999999999999999988753322221 123467899999999999999999999999999
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q psy597 408 ELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAH 450 (546)
Q Consensus 408 ~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~ 450 (546)
+|.+..+++.-|.++..+|+|+.|+..|++++++.|
T Consensus 287 -------~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P 322 (397)
T KOG0543|consen 287 -------DPNNVKALYRRGQALLALGEYDLARDDFQKALKLEP 322 (397)
T ss_pred -------CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCC
Confidence 899999999999999999999999999999999744
No 161
>KOG1839|consensus
Probab=98.53 E-value=2e-06 Score=93.74 Aligned_cols=200 Identities=24% Similarity=0.226 Sum_probs=166.9
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 371 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 371 (546)
.+.-....|......|.+.+|.+ ..+++.+.....|.-+|..+..|..++.++...|++++|+.+..++.-+.++..|.
T Consensus 931 ~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ 1009 (1236)
T KOG1839|consen 931 EAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGK 1009 (1236)
T ss_pred hhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccC
Confidence 34445566777777889999999 88899898888888899999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 372 EHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 372 ~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
++|.....+.+++...+..++...|...+.++..+..-..++++|..+.+..+++.++...++++.|+.+.+.|+....
T Consensus 1010 ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~- 1088 (1236)
T KOG1839|consen 1010 DSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNK- 1088 (1236)
T ss_pred CCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHh-
Confidence 9999999999999999999999999999999999988888899999999999999999999999999999999887421
Q ss_pred cccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q psy597 452 REFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAH 530 (546)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~ 530 (546)
+..++..-....++..+++++...+++..|....+....+++
T Consensus 1089 -------------------------------------~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~ 1130 (1236)
T KOG1839|consen 1089 -------------------------------------KVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGIYK 1130 (1236)
T ss_pred -------------------------------------hhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHH
Confidence 222233344455555666666666666666666666666554
No 162
>KOG3785|consensus
Probab=98.52 E-value=3.5e-06 Score=79.05 Aligned_cols=202 Identities=20% Similarity=0.176 Sum_probs=119.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHH
Q psy597 224 QYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVY 303 (546)
Q Consensus 224 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~ 303 (546)
-+....+|..|+.+++-.+.. +.......-.++|.++
T Consensus 31 dfls~rDytGAislLefk~~~-------------------------------------------~~EEE~~~~lWia~C~ 67 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNL-------------------------------------------DREEEDSLQLWIAHCY 67 (557)
T ss_pred HHHhcccchhHHHHHHHhhcc-------------------------------------------chhhhHHHHHHHHHHH
Confidence 355678999999988776642 2222345567789999
Q ss_pred HHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q psy597 304 RDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNL 383 (546)
Q Consensus 304 ~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 383 (546)
+..|+|++|...|.-+... .+.| +..+.+||.+++.+|.|.+|.....++- +.|.....+.++
T Consensus 68 fhLgdY~~Al~~Y~~~~~~------~~~~--~el~vnLAcc~FyLg~Y~eA~~~~~ka~---------k~pL~~RLlfhl 130 (557)
T KOG3785|consen 68 FHLGDYEEALNVYTFLMNK------DDAP--AELGVNLACCKFYLGQYIEAKSIAEKAP---------KTPLCIRLLFHL 130 (557)
T ss_pred HhhccHHHHHHHHHHHhcc------CCCC--cccchhHHHHHHHHHHHHHHHHHHhhCC---------CChHHHHHHHHH
Confidence 9999999999999887763 2333 6678899999999999999998777653 235555555554
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChh
Q psy597 384 ALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKP 463 (546)
Q Consensus 384 a~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~ 463 (546)
+. +.|+-++-..+- ..+. +...-...||.+.+..-.|++|++.|++++.-.++- .......
T Consensus 131 ah---klndEk~~~~fh-~~Lq-----------D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey----~alNVy~ 191 (557)
T KOG3785|consen 131 AH---KLNDEKRILTFH-SSLQ-----------DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEY----IALNVYM 191 (557)
T ss_pred HH---HhCcHHHHHHHH-HHHh-----------hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhh----hhhHHHH
Confidence 43 334433322222 2211 111233456666666667777777777777543221 1122233
Q ss_pred hHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHc
Q psy597 464 IWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ 512 (546)
Q Consensus 464 ~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~ 512 (546)
+.++....-++-+.+.+.-.+.. .|+...+....+..+++.
T Consensus 192 ALCyyKlDYydvsqevl~vYL~q--------~pdStiA~NLkacn~fRl 232 (557)
T KOG3785|consen 192 ALCYYKLDYYDVSQEVLKVYLRQ--------FPDSTIAKNLKACNLFRL 232 (557)
T ss_pred HHHHHhcchhhhHHHHHHHHHHh--------CCCcHHHHHHHHHHHhhh
Confidence 34444444444443333332222 444555555556555554
No 163
>KOG2047|consensus
Probab=98.51 E-value=3e-05 Score=78.44 Aligned_cols=149 Identities=17% Similarity=0.235 Sum_probs=109.5
Q ss_pred ChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH----hcCCCCHH------HHHHHHHHHHHHHHcCCHHHHHHHH
Q psy597 289 HPDVATMLNILALVYRDQNKYKEAANLLNDALTIREK----TLGENHAA------VAATLNNLAVLYGKRGKYKEAEPLC 358 (546)
Q Consensus 289 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----~~g~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~ 358 (546)
..+.+.+|..-|..-....+++.|..+.++|...-.. .+.+..|. ...+|...+......|-++.....|
T Consensus 421 v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vY 500 (835)
T KOG2047|consen 421 VEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVY 500 (835)
T ss_pred hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHH
Confidence 3566888999999999999999999999998875322 11222332 2356677788888889999999999
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH---HHHHcCCH
Q psy597 359 KRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLAS---CYLKQGKY 435 (546)
Q Consensus 359 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~---~y~~~g~~ 435 (546)
.+.+++. -..+..-.|.|..+....-+++|.+.|++.+.++. .|.....|+..-. --+.--+.
T Consensus 501 driidLr--------iaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk------~p~v~diW~tYLtkfi~rygg~kl 566 (835)
T KOG2047|consen 501 DRIIDLR--------IATPQIIINYAMFLEEHKYFEESFKAYERGISLFK------WPNVYDIWNTYLTKFIKRYGGTKL 566 (835)
T ss_pred HHHHHHh--------cCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCC------CccHHHHHHHHHHHHHHHhcCCCH
Confidence 9999986 44456667889999888899999999999988842 4555555544332 22333467
Q ss_pred HHHHHHHHHHHHhhhh
Q psy597 436 KEAEILYKQVLTRAHE 451 (546)
Q Consensus 436 ~eA~~~~~~al~~~~~ 451 (546)
+.|..+|+++++.+|.
T Consensus 567 EraRdLFEqaL~~Cpp 582 (835)
T KOG2047|consen 567 ERARDLFEQALDGCPP 582 (835)
T ss_pred HHHHHHHHHHHhcCCH
Confidence 8999999999987653
No 164
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.50 E-value=3.7e-07 Score=66.56 Aligned_cols=64 Identities=25% Similarity=0.344 Sum_probs=57.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhc
Q psy597 381 NNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 452 (546)
Q Consensus 381 ~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~ 452 (546)
+.+|..+...|++++|+..|+++++. .|....++..+|.++..+|++++|+.+|+++++..|.+
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQ--------DPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCC--------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 35799999999999999999999987 89999999999999999999999999999999987653
No 165
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.49 E-value=6e-06 Score=85.76 Aligned_cols=133 Identities=17% Similarity=0.164 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChh
Q psy597 215 LRTLHNLVIQYASQGR---YEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPD 291 (546)
Q Consensus 215 ~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (546)
+-.++..|..|...++ +..|+.+|++|++ .+|+
T Consensus 339 Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--------------------------------------------ldP~ 374 (517)
T PRK10153 339 ALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--------------------------------------------SEPD 374 (517)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--------------------------------------------hCCC
Confidence 3345667777776655 7789999999988 3677
Q ss_pred HHHHHHHHHHHHHHhhc--------HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 292 VATMLNILALVYRDQNK--------YKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALE 363 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~--------~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 363 (546)
.+.++..++.+|..... ...+.....+++.+ +..+..+.++..+|..+...|++++|...+++|+.
T Consensus 375 ~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al------~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~ 448 (517)
T PRK10153 375 FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL------PELNVLPRIYEILAVQALVKGKTDEAYQAINKAID 448 (517)
T ss_pred cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc------ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 77777777777765432 23334444443332 22333357788889999999999999999999999
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 364 IREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406 (546)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 406 (546)
+. |. ..+|..+|.++...|++++|+..|++|+.+
T Consensus 449 L~--------ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 449 LE--------MS-WLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred cC--------CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 94 53 679999999999999999999999999998
No 166
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.48 E-value=5e-05 Score=69.29 Aligned_cols=176 Identities=18% Similarity=0.147 Sum_probs=137.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHH
Q psy597 215 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVAT 294 (546)
Q Consensus 215 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 294 (546)
+..|+.-|......|+|++|+..|+.+... .+..|....
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~-----------------------------------------~p~s~~~~q 72 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSR-----------------------------------------HPFSPYSEQ 72 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----------------------------------------CCCCcccHH
Confidence 467899999999999999999999887753 335667788
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc-----CCH---HHHHHHHHHHHHHHH
Q psy597 295 MLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKR-----GKY---KEAEPLCKRALEIRE 366 (546)
Q Consensus 295 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~-----g~~---~~A~~~~~~al~~~~ 366 (546)
+...++.+++..++++.|+..+++-+.++ +.+|....+++..|.+++.. .+. ..|..-|+..+..+
T Consensus 73 a~l~l~yA~Yk~~~y~~A~~~~drFi~ly-----P~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry- 146 (254)
T COG4105 73 AQLDLAYAYYKNGEYDLALAYIDRFIRLY-----PTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY- 146 (254)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhC-----CCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC-
Confidence 99999999999999999999999999997 66788888899888887653 233 34555555555544
Q ss_pred HhcCCCChHHHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc
Q psy597 367 KVLGKEHPDVAK--------------QLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ 432 (546)
Q Consensus 367 ~~~~~~~~~~~~--------------~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~ 432 (546)
++++.... --..+|..|.+.|.+..|+..++..++-+ ++.+....++..+..+|..+
T Consensus 147 ----PnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y-----~~t~~~~eaL~~l~eaY~~l 217 (254)
T COG4105 147 ----PNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENY-----PDTSAVREALARLEEAYYAL 217 (254)
T ss_pred ----CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcc-----ccccchHHHHHHHHHHHHHh
Confidence 33332222 22356889999999999999999999875 34566778899999999999
Q ss_pred CCHHHHHHHHHHHH
Q psy597 433 GKYKEAEILYKQVL 446 (546)
Q Consensus 433 g~~~eA~~~~~~al 446 (546)
|-.++|...-.-.-
T Consensus 218 gl~~~a~~~~~vl~ 231 (254)
T COG4105 218 GLTDEAKKTAKVLG 231 (254)
T ss_pred CChHHHHHHHHHHH
Confidence 99999987654433
No 167
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.47 E-value=3.4e-06 Score=87.56 Aligned_cols=138 Identities=15% Similarity=0.117 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHHh---hcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCH--------HHHHHHHHH
Q psy597 292 VATMLNILALVYRDQ---NKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKY--------KEAEPLCKR 360 (546)
Q Consensus 292 ~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~--------~~A~~~~~~ 360 (546)
.+.-++..|..|... +.+..|+.+|++|+++ +|..+.++..++.+|.....+ ..+.....+
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--------dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--------EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 455566777777654 4488999999999998 566677888877777654332 233333333
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHH
Q psy597 361 ALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEI 440 (546)
Q Consensus 361 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~ 440 (546)
++.+ +..+..+.++..+|..+...|++++|...+++|+++ .|. ..+|..+|.++...|++++|++
T Consensus 410 a~al------~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--------~ps-~~a~~~lG~~~~~~G~~~eA~~ 474 (517)
T PRK10153 410 IVAL------PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--------EMS-WLNYVLLGKVYELKGDNRLAAD 474 (517)
T ss_pred hhhc------ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------CCC-HHHHHHHHHHHHHcCCHHHHHH
Confidence 3332 112444578888999999999999999999999998 564 6799999999999999999999
Q ss_pred HHHHHHHhhhhc
Q psy597 441 LYKQVLTRAHER 452 (546)
Q Consensus 441 ~~~~al~~~~~~ 452 (546)
.|++++.+.|..
T Consensus 475 ~~~~A~~L~P~~ 486 (517)
T PRK10153 475 AYSTAFNLRPGE 486 (517)
T ss_pred HHHHHHhcCCCC
Confidence 999999986543
No 168
>KOG1070|consensus
Probab=98.46 E-value=2.6e-05 Score=85.24 Aligned_cols=260 Identities=16% Similarity=0.084 Sum_probs=187.3
Q ss_pred hhhHHHhhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHH
Q psy597 198 PSQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAK 277 (546)
Q Consensus 198 ~~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~ 277 (546)
|+....+......+|+..-.|...-..+...++.++|...+++||....-..
T Consensus 1441 pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~RE---------------------------- 1492 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFRE---------------------------- 1492 (1710)
T ss_pred CcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcch----------------------------
Confidence 3444556666677888888998888888999999999999999997431100
Q ss_pred HHHHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHH
Q psy597 278 VAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPL 357 (546)
Q Consensus 278 ~~~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 357 (546)
....-....+|.++-. .-|.-+.-.+.|++|.+.+ ++ ...+..|..+|...+.+++|.++
T Consensus 1493 --------eeEKLNiWiA~lNlEn---~yG~eesl~kVFeRAcqyc-------d~--~~V~~~L~~iy~k~ek~~~A~el 1552 (1710)
T KOG1070|consen 1493 --------EEEKLNIWIAYLNLEN---AYGTEESLKKVFERACQYC-------DA--YTVHLKLLGIYEKSEKNDEADEL 1552 (1710)
T ss_pred --------hHHHHHHHHHHHhHHH---hhCcHHHHHHHHHHHHHhc-------ch--HHHHHHHHHHHHHhhcchhHHHH
Confidence 1111222333343333 3455667788889988875 22 44688899999999999999999
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHH
Q psy597 358 CKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKE 437 (546)
Q Consensus 358 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~e 437 (546)
++..++.+ ......|..+|..+..+.+-+.|...+.+|+.... ...........|.+-++.|+.+.
T Consensus 1553 l~~m~KKF--------~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lP------k~eHv~~IskfAqLEFk~GDaeR 1618 (1710)
T KOG1070|consen 1553 LRLMLKKF--------GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLP------KQEHVEFISKFAQLEFKYGDAER 1618 (1710)
T ss_pred HHHHHHHh--------cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcc------hhhhHHHHHHHHHHHhhcCCchh
Confidence 99999987 35678899999999999999999999999999732 23366777888999999999999
Q ss_pred HHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHc-CCHH
Q psy597 438 AEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ-GKYK 516 (546)
Q Consensus 438 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~-g~~~ 516 (546)
+..+|+..+..+|... +.+..........++.......|++++.. .-.+.....++..=.-|.+. |+-+
T Consensus 1619 GRtlfEgll~ayPKRt----DlW~VYid~eik~~~~~~vR~lfeRvi~l------~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1619 GRTLFEGLLSAYPKRT----DLWSVYIDMEIKHGDIKYVRDLFERVIEL------KLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred hHHHHHHHHhhCccch----hHHHHHHHHHHccCCHHHHHHHHHHHHhc------CCChhHhHHHHHHHHHHHHhcCchh
Confidence 9999999998766532 34444555566778888888999998876 22455555555544444443 6655
Q ss_pred HHHHHHHHHHHHh
Q psy597 517 EAEILYKQVLTRA 529 (546)
Q Consensus 517 ~A~~~~~~al~~~ 529 (546)
.....=.+|.+..
T Consensus 1689 ~vE~VKarA~EYv 1701 (1710)
T KOG1070|consen 1689 NVEYVKARAKEYV 1701 (1710)
T ss_pred hHHHHHHHHHHHH
Confidence 5555555666544
No 169
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.46 E-value=7.5e-07 Score=64.89 Aligned_cols=63 Identities=29% Similarity=0.438 Sum_probs=53.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Q psy597 424 NLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKN 503 (546)
Q Consensus 424 ~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~ 503 (546)
.+|..++..|++++|+..|++++.. .|....++.
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~----------------------------------------------~P~~~~a~~ 35 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQ----------------------------------------------DPDNPEAWY 35 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCC----------------------------------------------STTHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHH----------------------------------------------CCCCHHHHH
Confidence 4677888888888888888887764 688899999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Q psy597 504 NLASCYLKQGKYKEAEILYKQVLTRAHER 532 (546)
Q Consensus 504 ~La~~y~~~g~~~~A~~~~~~al~~~~~~ 532 (546)
.+|.++..+|++++|+.+|+++++..|++
T Consensus 36 ~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 36 LLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 99999999999999999999999998765
No 170
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.44 E-value=1.9e-06 Score=82.75 Aligned_cols=165 Identities=24% Similarity=0.235 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHH
Q psy597 214 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVA 293 (546)
Q Consensus 214 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 293 (546)
+.-.....|.++...|++++|+..+.+. ...
T Consensus 101 ~~~~~~~~A~i~~~~~~~~~AL~~l~~~-------------------------------------------------~~l 131 (290)
T PF04733_consen 101 NEIVQLLAATILFHEGDYEEALKLLHKG-------------------------------------------------GSL 131 (290)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHCCCTTT-------------------------------------------------TCH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHcc-------------------------------------------------Ccc
Confidence 4455677778888899999988887542 123
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhcCC
Q psy597 294 TMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRG--KYKEAEPLCKRALEIREKVLGK 371 (546)
Q Consensus 294 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~ 371 (546)
.+......+|...++++.|.+.++.+-+. .++. .-+....|++....| ++.+|.-+|++..+.
T Consensus 132 E~~al~Vqi~L~~~R~dlA~k~l~~~~~~------~eD~--~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~------- 196 (290)
T PF04733_consen 132 ELLALAVQILLKMNRPDLAEKELKNMQQI------DEDS--ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK------- 196 (290)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHCC------SCCH--HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-------
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCcH--HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-------
Confidence 44556678899999999999988876544 2222 222333344444455 699999999986543
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhhh
Q psy597 372 EHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKY-KEAEILYKQVLTRAH 450 (546)
Q Consensus 372 ~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~-~eA~~~~~~al~~~~ 450 (546)
.+..+..++.+|.++..+|+|++|...+.+++.. +|..+.++.|++.+....|+. +.+.+++.+.....|
T Consensus 197 -~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~--------~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p 267 (290)
T PF04733_consen 197 -FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK--------DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNP 267 (290)
T ss_dssp -S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---------CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTT
T ss_pred -cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCC
Confidence 2556778999999999999999999999998865 677888999999999999998 556667777666544
Q ss_pred h
Q psy597 451 E 451 (546)
Q Consensus 451 ~ 451 (546)
.
T Consensus 268 ~ 268 (290)
T PF04733_consen 268 N 268 (290)
T ss_dssp T
T ss_pred C
Confidence 4
No 171
>KOG1585|consensus
Probab=98.43 E-value=0.00015 Score=65.12 Aligned_cols=235 Identities=20% Similarity=0.223 Sum_probs=167.8
Q ss_pred CCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy597 286 GHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 365 (546)
Q Consensus 286 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 365 (546)
.++....+..|..-+.+|....+|++|...+.+|.+-++.. ...-..+.++-..|.+...+..+.++..+|++|..++
T Consensus 24 kad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnn--rslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 24 KADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENN--RSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELY 101 (308)
T ss_pred CCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 44566677888888999999999999999999999887765 3444557788889999999999999999999999998
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy597 366 EKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQV 445 (546)
Q Consensus 366 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~a 445 (546)
.+... |+.+..-...+--....-++++|+.+|++++.+.+.- .........+...++++.+..+|.+|-..+.+-
T Consensus 102 ~E~Gs---pdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~--dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe 176 (308)
T KOG1585|consen 102 VECGS---PDTAAMALEKAAKALENVKPDDALQLYQRALAVVEED--DRDQMAFELYGKCSRVLVRLEKFTEAATAFLKE 176 (308)
T ss_pred HHhCC---cchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc--chHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHh
Confidence 77632 4444444444444556789999999999999997654 223445667788899999999999998888775
Q ss_pred HHhhhhcc-c-CcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy597 446 LTRAHERE-F-GACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYK 523 (546)
Q Consensus 446 l~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~ 523 (546)
........ . .........+..+....++..|...|+..-++ .+-..+....++.+|-..| ..|+.++....+.
T Consensus 177 ~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi----p~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 177 GVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI----PAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred hhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC----ccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 55433211 1 11111222334456667777777777766554 2233567778888887777 5788888877766
Q ss_pred HHHHHhhhh
Q psy597 524 QVLTRAHER 532 (546)
Q Consensus 524 ~al~~~~~~ 532 (546)
.-.-..-++
T Consensus 252 sp~~r~MDn 260 (308)
T KOG1585|consen 252 SPTVRNMDN 260 (308)
T ss_pred ChHhhhhhH
Confidence 544444344
No 172
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.41 E-value=2.3e-06 Score=78.71 Aligned_cols=105 Identities=22% Similarity=0.229 Sum_probs=93.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChH
Q psy597 338 LNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSN 417 (546)
Q Consensus 338 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~ 417 (546)
.++.|.-++..|+|..|..-|..-+..+ ++.+....+++.||.+++.+|+|+.|...|..++.-+ |++|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~Y-----P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~-----P~s~K 213 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKY-----PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY-----PKSPK 213 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC-----CCCCC
Confidence 3444555567899999999999999887 6778889999999999999999999999999998863 67888
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhc
Q psy597 418 VAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 452 (546)
Q Consensus 418 ~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~ 452 (546)
.+++++.||.+...+|+.++|...|+++++.+|..
T Consensus 214 ApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 214 APDALLKLGVSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 99999999999999999999999999999987754
No 173
>PRK15331 chaperone protein SicA; Provisional
Probab=98.38 E-value=3e-06 Score=72.07 Aligned_cols=102 Identities=19% Similarity=0.167 Sum_probs=89.5
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy597 331 HAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELK 410 (546)
Q Consensus 331 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~ 410 (546)
++......+..|.-++..|++++|..+|+-..-. +|.....+..||.++..+++|++|+..|..|..+
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~--------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l---- 100 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY--------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL---- 100 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----
Confidence 5566778889999999999999999999887765 3666778899999999999999999999999988
Q ss_pred cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 411 LGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 411 ~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
+++.+...+..|.||+.+|+...|...|..++..
T Consensus 101 ----~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 101 ----LKNDYRPVFFTGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred ----ccCCCCccchHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 5555666889999999999999999999999873
No 174
>KOG4555|consensus
Probab=98.38 E-value=4.3e-05 Score=61.53 Aligned_cols=102 Identities=22% Similarity=0.188 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q psy597 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPD 414 (546)
Q Consensus 335 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~ 414 (546)
...+-.-|......|+.+.|++.|.+++.+. |..+.+|+|.+..+.-+|+.++|+.-+.+|+++. |+.
T Consensus 43 S~~LEl~~valaE~g~Ld~AlE~F~qal~l~--------P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa----g~~ 110 (175)
T KOG4555|consen 43 SRELELKAIALAEAGDLDGALELFGQALCLA--------PERASAYNNRAQALRLQGDDEEALDDLNKALELA----GDQ 110 (175)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhc--------ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc----Ccc
Confidence 3455667888999999999999999999997 8889999999999999999999999999999983 344
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 415 DSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 415 ~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
......++...|.+|..+|+-+.|..-|+.+-.+
T Consensus 111 trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 111 TRTACQAFVQRGLLYRLLGNDDAARADFEAAAQL 144 (175)
T ss_pred chHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence 5667788999999999999999999999998876
No 175
>KOG1586|consensus
Probab=98.37 E-value=0.00029 Score=62.86 Aligned_cols=195 Identities=15% Similarity=0.087 Sum_probs=133.1
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChh
Q psy597 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPD 291 (546)
Q Consensus 212 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (546)
.+-.+.+..-|..|....+|..|=..|.++-+...+.+ +..+
T Consensus 31 eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~--------------------------------------skhD 72 (288)
T KOG1586|consen 31 EEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAG--------------------------------------SKHD 72 (288)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcC--------------------------------------Cchh
Confidence 44455666666666666667777666666666544433 4566
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhcC
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKR-GKYKEAEPLCKRALEIREKVLG 370 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~ 370 (546)
.+..|...+.+|... +..+|+.+++++++++... +.-...+..+..+|.+|..- .++++|+.+|+++-+.+..-
T Consensus 73 aat~YveA~~cykk~-~~~eAv~cL~~aieIyt~~--Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e-- 147 (288)
T KOG1586|consen 73 AATTYVEAANCYKKV-DPEEAVNCLEKAIEIYTDM--GRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE-- 147 (288)
T ss_pred HHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHhh--hHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch--
Confidence 677777777777654 9999999999999999776 44445566777899999876 89999999999999887432
Q ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q psy597 371 KEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPD-DSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRA 449 (546)
Q Consensus 371 ~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~-~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~ 449 (546)
......-.++...|..-...++|.+|+..|++.....-.. +- ....-..+..-|.|++-..+.-.+...+++-....
T Consensus 148 es~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n--~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~d 225 (288)
T KOG1586|consen 148 ESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDN--NLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELD 225 (288)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--hHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcC
Confidence 1112233456667777778999999999999877652111 00 01122334556777777788777776666666654
Q ss_pred hh
Q psy597 450 HE 451 (546)
Q Consensus 450 ~~ 451 (546)
|.
T Consensus 226 P~ 227 (288)
T KOG1586|consen 226 PA 227 (288)
T ss_pred Cc
Confidence 43
No 176
>PRK11906 transcriptional regulator; Provisional
Probab=98.36 E-value=3.3e-05 Score=76.53 Aligned_cols=133 Identities=19% Similarity=0.158 Sum_probs=105.8
Q ss_pred CCChhHHHHHHHHHHHHHHh---------hcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHH
Q psy597 287 HDHPDVATMLNILALVYRDQ---------NKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPL 357 (546)
Q Consensus 287 ~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 357 (546)
+.+|..+.+|..++.+++.. ....+|....++|+++ ++..+.++..+|.+....|+++.|...
T Consensus 289 ~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel--------d~~Da~a~~~~g~~~~~~~~~~~a~~~ 360 (458)
T PRK11906 289 DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI--------TTVDGKILAIMGLITGLSGQAKVSHIL 360 (458)
T ss_pred cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHhhcchhhHHHH
Confidence 36788889999999988765 2345677777777776 455578899999999999999999999
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH-HHHH-HHHHcCCH
Q psy597 358 CKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKN-NLAS-CYLKQGKY 435 (546)
Q Consensus 358 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~-~La~-~y~~~g~~ 435 (546)
|++|+.+ +|+.+.+++..|.++...|+.++|...+++|+++ +|....+-. .+-. .|+ -...
T Consensus 361 f~rA~~L--------~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--------sP~~~~~~~~~~~~~~~~-~~~~ 423 (458)
T PRK11906 361 FEQAKIH--------STDIASLYYYRALVHFHNEKIEEARICIDKSLQL--------EPRRRKAVVIKECVDMYV-PNPL 423 (458)
T ss_pred HHHHhhc--------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--------CchhhHHHHHHHHHHHHc-CCch
Confidence 9999999 4999999999999999999999999999999998 665543322 2222 343 4557
Q ss_pred HHHHHHHHH
Q psy597 436 KEAEILYKQ 444 (546)
Q Consensus 436 ~eA~~~~~~ 444 (546)
++|+.+|-+
T Consensus 424 ~~~~~~~~~ 432 (458)
T PRK11906 424 KNNIKLYYK 432 (458)
T ss_pred hhhHHHHhh
Confidence 788877654
No 177
>KOG4555|consensus
Probab=98.36 E-value=4.3e-05 Score=61.53 Aligned_cols=102 Identities=20% Similarity=0.252 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q psy597 293 ATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKE 372 (546)
Q Consensus 293 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 372 (546)
...+-.-|......|+.+.|++.|.+++.++ |..+.+|++.+..+.-.|+.++|++-+.+++++. |+.
T Consensus 43 S~~LEl~~valaE~g~Ld~AlE~F~qal~l~--------P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa----g~~ 110 (175)
T KOG4555|consen 43 SRELELKAIALAEAGDLDGALELFGQALCLA--------PERASAYNNRAQALRLQGDDEEALDDLNKALELA----GDQ 110 (175)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhc--------ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc----Ccc
Confidence 4456667888999999999999999999996 4458899999999999999999999999999996 444
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 373 HPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406 (546)
Q Consensus 373 ~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 406 (546)
......++...|.+|..+|+.+.|..-|+.|.++
T Consensus 111 trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 111 TRTACQAFVQRGLLYRLLGNDDAARADFEAAAQL 144 (175)
T ss_pred chHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence 5567788999999999999999999999999876
No 178
>PRK15331 chaperone protein SicA; Provisional
Probab=98.35 E-value=4.1e-06 Score=71.26 Aligned_cols=101 Identities=17% Similarity=0.082 Sum_probs=83.5
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhc
Q psy597 373 HPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 452 (546)
Q Consensus 373 ~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~ 452 (546)
++......+..|.-++..|++++|...|+-..-. ++...+.+..||.|+..+|+|++|+..|..+..+..++
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~--------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~d 104 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY--------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKND 104 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCC
Confidence 4667788899999999999999999999888776 77778889999999999999999999999998875543
Q ss_pred ccCcccCCChhhHHHHhhchhhHHHHHHHHHHH
Q psy597 453 EFGACDGDNKPIWQDRQKNKAKNREKYYQRALE 485 (546)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~ 485 (546)
+ .+....+.++...|+...|...|..++.
T Consensus 105 p----~p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 105 Y----RPVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred C----CccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 3 4466667777777777777777777664
No 179
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.34 E-value=0.0003 Score=64.91 Aligned_cols=173 Identities=32% Similarity=0.401 Sum_probs=129.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHH
Q psy597 215 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVAT 294 (546)
Q Consensus 215 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 294 (546)
.......+..+...+.+..+...+...+.. ...+....
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~~~~~~ 96 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALEL------------------------------------------ELLPNLAE 96 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhh------------------------------------------hhccchHH
Confidence 456677778888888888888888777652 13466677
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q psy597 295 MLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAV-LYGKRGKYKEAEPLCKRALEIREKVLGKEH 373 (546)
Q Consensus 295 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 373 (546)
.+...+..+...+++..++..+..++.... .+ .......+. ++...|+++.|...+.+++... +..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-----~~~ 163 (291)
T COG0457 97 ALLNLGLLLEALGKYEEALELLEKALALDP------DP--DLAEALLALGALYELGDYEEALELYEKALELD-----PEL 163 (291)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcCCC------Cc--chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCc
Confidence 788888888899999999999988887531 11 222333333 8889999999999999996531 000
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q psy597 374 PDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSN-VAKTKNNLASCYLKQGKYKEAEILYKQVLTRAH 450 (546)
Q Consensus 374 ~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~-~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~ 450 (546)
......+...+..+...++++.|+..+.+++.. .+. ....+..++.++...+++..|...+..++...+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 233 (291)
T COG0457 164 NELAEALLALGALLEALGRYEEALELLEKALKL--------NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDP 233 (291)
T ss_pred cchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--------CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCc
Confidence 245666666777788889999999999999988 455 577788899999999999999999998888654
No 180
>KOG2300|consensus
Probab=98.31 E-value=0.00056 Score=67.30 Aligned_cols=253 Identities=16% Similarity=0.089 Sum_probs=173.9
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHH
Q psy597 226 ASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRD 305 (546)
Q Consensus 226 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~ 305 (546)
...|-|++|..+-++++....+...... ...+ -.......+-.+..+-.-
T Consensus 286 m~~gy~~~~~K~tDe~i~q~eklkq~d~-~sri-----------------------------lsm~km~~LE~iv~c~lv 335 (629)
T KOG2300|consen 286 MPAGYFKKAQKYTDEAIKQTEKLKQADL-MSRI-----------------------------LSMFKMILLEHIVMCRLV 335 (629)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcccccc-hhHH-----------------------------HHHHHHHHHHHHHHHHHH
Confidence 3567788888888888876554431000 0000 001123445566777778
Q ss_pred hhcHHHHHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q psy597 306 QNKYKEAANLLNDALTIREKTLGEN--HAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNL 383 (546)
Q Consensus 306 ~g~~~~A~~~~~~al~~~~~~~g~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 383 (546)
.|++.+|++....+.+.+.+..++. ....+.+...+|......|.|+.|...|..|.+...+. .-.+.+-.|+
T Consensus 336 ~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~-----dl~a~~nlnl 410 (629)
T KOG2300|consen 336 RGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI-----DLQAFCNLNL 410 (629)
T ss_pred hCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH-----HHHHHHHHhH
Confidence 8999999999999999987763211 12245677888999999999999999999999987554 4567777889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC-------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCc
Q psy597 384 ALLCQNQSKYEEVERYYQRALEIYELKLGPDD-------SNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGA 456 (546)
Q Consensus 384 a~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~-------~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~ 456 (546)
|.+|...|+-+.- .++++.. ++.+ ...+.+++..|...+.++++.+|...+.+.++.....+...
T Consensus 411 Ai~YL~~~~~ed~----y~~ld~i----~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~r 482 (629)
T KOG2300|consen 411 AISYLRIGDAEDL----YKALDLI----GPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNR 482 (629)
T ss_pred HHHHHHhccHHHH----HHHHHhc----CCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHH
Confidence 9999998875533 2333331 1211 12345677778888999999999999999999874433322
Q ss_pred ccC--CChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCC--HHHHHHHHH
Q psy597 457 CDG--DNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGK--YKEAEILYK 523 (546)
Q Consensus 457 ~~~--~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~--~~~A~~~~~ 523 (546)
... ...++......|+..++.+...-++++..+. +|.+........+-.+|...|+ .+...+.|.
T Consensus 483 L~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi--~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~~ 551 (629)
T KOG2300|consen 483 LTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKI--PDIPVQLWSSSILTDLYQALGEKGNEMENEAFR 551 (629)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcC--CCchHHHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 221 2233444677889999999999999888777 4577777777778889999888 444444443
No 181
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=1.3e-05 Score=74.70 Aligned_cols=107 Identities=21% Similarity=0.215 Sum_probs=95.5
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHH
Q psy597 331 HAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQS---KYEEVERYYQRALEIY 407 (546)
Q Consensus 331 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~eA~~~~~~al~~~ 407 (546)
+|..+.-|..||.+|...|++..|...|.+|+++. |+....+..+|.+++.+. ...++...+++++..
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--------g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~- 222 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA--------GDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL- 222 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc-
Confidence 56778899999999999999999999999999995 777778888888877644 467899999999998
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcc
Q psy597 408 ELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHERE 453 (546)
Q Consensus 408 ~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~ 453 (546)
+|....+.+.||..++.+|+|.+|...++..++..+.+.
T Consensus 223 -------D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 223 -------DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred -------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 999999999999999999999999999999999876543
No 182
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=1.6e-05 Score=74.11 Aligned_cols=106 Identities=21% Similarity=0.220 Sum_probs=87.8
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhh
Q psy597 373 HPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQG---KYKEAEILYKQVLTRA 449 (546)
Q Consensus 373 ~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g---~~~eA~~~~~~al~~~ 449 (546)
+|..+.-|..||.+|..+|++..|...|.+|+++ .|+++..+..+|.++..+. ...++...+++++..
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--------~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~- 222 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRL--------AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL- 222 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc-
Confidence 5888888999999999999999999999999988 7777778888888776654 345666666666664
Q ss_pred hhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q psy597 450 HEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRA 529 (546)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~ 529 (546)
+|....+.+.||..++.+|+|.+|...++..++..
T Consensus 223 ---------------------------------------------D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 223 ---------------------------------------------DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred ---------------------------------------------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 77888999999999999999999999999999987
Q ss_pred hhh
Q psy597 530 HER 532 (546)
Q Consensus 530 ~~~ 532 (546)
|.+
T Consensus 258 p~~ 260 (287)
T COG4235 258 PAD 260 (287)
T ss_pred CCC
Confidence 654
No 183
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.26 E-value=1.4e-05 Score=79.39 Aligned_cols=120 Identities=25% Similarity=0.280 Sum_probs=103.0
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Q psy597 299 LALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAK 378 (546)
Q Consensus 299 la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 378 (546)
+-.++...++++.|+..|++.... .|. +...++.++...++-.+|+..+.+++.. .|....
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~--------~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~--------~p~d~~ 235 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRER--------DPE---VAVLLARVYLLMNEEVEAIRLLNEALKE--------NPQDSE 235 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhc--------CCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHh--------CCCCHH
Confidence 344555678899999999987654 333 4556899999999999999999999966 366788
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy597 379 QLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQV 445 (546)
Q Consensus 379 ~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~a 445 (546)
.+...+..+...++++.|+...++++.+ .|....+|..|+.+|...|+++.|+-.+..+
T Consensus 236 LL~~Qa~fLl~k~~~~lAL~iAk~av~l--------sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 236 LLNLQAEFLLSKKKYELALEIAKKAVEL--------SPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 9999999999999999999999999999 8999999999999999999999999777643
No 184
>PRK11906 transcriptional regulator; Provisional
Probab=98.26 E-value=4.7e-05 Score=75.46 Aligned_cols=136 Identities=13% Similarity=-0.020 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHhh---cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHH
Q psy597 295 MLNILALVYRDQN---KYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKR---------GKYKEAEPLCKRAL 362 (546)
Q Consensus 295 ~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al 362 (546)
.++..|......+ ....|..+|.+|+... +-+|..+.+|..+|.++... ....+|....++|+
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~-----~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKS-----DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcc-----cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 4466676665544 4567888899998332 22677888898888888765 23566778888888
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHH
Q psy597 363 EIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILY 442 (546)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~ 442 (546)
++ ++..+.++..+|.+....++++.|...|++|+.+ +|+.+.+++..|.+....|+.++|...+
T Consensus 332 el--------d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--------~Pn~A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 332 DI--------TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--------STDIASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred hc--------CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--------CCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 87 4888999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHhhhh
Q psy597 443 KQVLTRAHE 451 (546)
Q Consensus 443 ~~al~~~~~ 451 (546)
++++.+.|.
T Consensus 396 ~~alrLsP~ 404 (458)
T PRK11906 396 DKSLQLEPR 404 (458)
T ss_pred HHHhccCch
Confidence 999998553
No 185
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.25 E-value=0.0022 Score=68.08 Aligned_cols=304 Identities=13% Similarity=-0.010 Sum_probs=178.8
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHH-HhhhhhhHHHHHHHHHHHHhccCCCCCh
Q psy597 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCA-LRSRKESYDIVKQAKVAQILGSGGHDHP 290 (546)
Q Consensus 212 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~-l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 290 (546)
|.....+..-+..+...|...+|+.+.-.|-+ +..+..+.... ........-..-.......-......+
T Consensus 344 ~~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA~d--------~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~- 414 (894)
T COG2909 344 ARLKELHRAAAEWFAEHGLPSEAIDHALAAGD--------PEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLAST- 414 (894)
T ss_pred CchhHHHHHHHHHHHhCCChHHHHHHHHhCCC--------HHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhC-
Confidence 45567778888888999999999887655422 22222222111 100000000000000000000000122
Q ss_pred hHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q psy597 291 DVATMLNILALVYRDQNKYKEAANLLNDALTIREKT-LGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 369 (546)
Q Consensus 291 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 369 (546)
+......++......++++|..++.++....+.. .+......+...-..|.+....|++++|+++.+.++.....
T Consensus 415 --P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~-- 490 (894)
T COG2909 415 --PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPE-- 490 (894)
T ss_pred --chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccc--
Confidence 2334455788888999999999999987765431 01112234455556788899999999999999999987522
Q ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHH--HHHHHHHHHH
Q psy597 370 GKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKE--AEILYKQVLT 447 (546)
Q Consensus 370 ~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~e--A~~~~~~al~ 447 (546)
........++..+|.+..-.|++++|..+...+.++.+.. ...+....+....+.++..+|+... ....|...-.
T Consensus 491 -~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~--~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~ 567 (894)
T COG2909 491 -AAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQH--DVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIRE 567 (894)
T ss_pred -ccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 1223456778899999999999999999999999998776 3345566677778999999994333 3333332222
Q ss_pred hhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy597 448 RAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVA-KTKNNLASCYLKQGKYKEAEILYKQVL 526 (546)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~-~~~~~La~~y~~~g~~~~A~~~~~~al 526 (546)
..-...+.........+..+....+.+.+.......+.+-.... + .+... -.+..|+.+++..|++++|...+.+..
T Consensus 568 q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~-~-~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~ 645 (894)
T COG2909 568 QHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYT-P-QPLLSRLALSMLAELEFLRGDLDKALAQLDELE 645 (894)
T ss_pred HHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcc-c-chhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 11111111001111112222223335555555555554432221 1 22222 233589999999999999999999999
Q ss_pred HHhhhhc
Q psy597 527 TRAHERE 533 (546)
Q Consensus 527 ~~~~~~~ 533 (546)
.....+.
T Consensus 646 ~l~~~~~ 652 (894)
T COG2909 646 RLLLNGQ 652 (894)
T ss_pred HHhcCCC
Confidence 8886554
No 186
>KOG2796|consensus
Probab=98.23 E-value=0.0017 Score=59.07 Aligned_cols=145 Identities=19% Similarity=0.253 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 371 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 371 (546)
...+.+.+..++...|+|.-+...+.+.++.. ++..+.....+|.+.+..|+.+.|..+|+++-+...+. +
T Consensus 176 l~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~-------~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL--~ 246 (366)
T KOG2796|consen 176 LGRVMYSMANCLLGMKEYVLSVDAYHSVIKYY-------PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKL--D 246 (366)
T ss_pred HHHHHHHHHHHHhcchhhhhhHHHHHHHHHhC-------CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhh--h
Confidence 45677888899999999999999999998842 34456677889999999999999999999887665555 2
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 372 EHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 372 ~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
+-.....+..+.+.+|.-.+++..|...|.+++.. ++..+.+.++-|.|..-.|+..+|++.++.++.+.|.
T Consensus 247 ~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~--------D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 247 GLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRM--------DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred ccchhHHHHhhhhhheecccchHHHHHHHhhcccc--------CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 23445677888999999999999999999999987 8888899999999999999999999999999988765
Q ss_pred cc
Q psy597 452 RE 453 (546)
Q Consensus 452 ~~ 453 (546)
..
T Consensus 319 ~~ 320 (366)
T KOG2796|consen 319 HY 320 (366)
T ss_pred cc
Confidence 43
No 187
>KOG4234|consensus
Probab=98.22 E-value=2.7e-05 Score=67.52 Aligned_cols=122 Identities=25% Similarity=0.251 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q psy597 293 ATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKE 372 (546)
Q Consensus 293 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 372 (546)
+..+-.-|.-++..|+|.+|..-|..|+.+++... .......|.+.|.++.+++.++.|+.-+.+++++.
T Consensus 95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~---~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~------- 164 (271)
T KOG4234|consen 95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTS---TEERSILYSNRAAALIKLRKWESAIEDCSKAIELN------- 164 (271)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcccc---HHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-------
Confidence 45566678899999999999999999999986641 23456678899999999999999999999999994
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC
Q psy597 373 HPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQG 433 (546)
Q Consensus 373 ~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g 433 (546)
|....++...|.+|....+|++|+.-|++.+++ +|..-.+.-.++.+--...
T Consensus 165 -pty~kAl~RRAeayek~ek~eealeDyKki~E~--------dPs~~ear~~i~rl~~~i~ 216 (271)
T KOG4234|consen 165 -PTYEKALERRAEAYEKMEKYEEALEDYKKILES--------DPSRREAREAIARLPPKIN 216 (271)
T ss_pred -chhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------CcchHHHHHHHHhcCHHHH
Confidence 889999999999999999999999999999998 7766666666555544333
No 188
>KOG3617|consensus
Probab=98.21 E-value=0.0003 Score=73.26 Aligned_cols=135 Identities=16% Similarity=0.202 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC--CCChHH----------HH
Q psy597 311 EAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG--KEHPDV----------AK 378 (546)
Q Consensus 311 ~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~----------~~ 378 (546)
++...+.+|+++++. .|....-.+|++.|.-+...++.+.|+++|+++-...-.++. .+.|.. ..
T Consensus 837 Qs~g~w~eA~eiAE~---~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~ 913 (1416)
T KOG3617|consen 837 QSQGMWSEAFEIAET---KDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDES 913 (1416)
T ss_pred HhcccHHHHHHHHhh---ccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchH
Confidence 333333444444433 444556778999999999999999999999986322211100 111222 24
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-----CCC--------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy597 379 QLNNLALLCQNQSKYEEVERYYQRALEIYELKL-----GPD--------DSNVAKTKNNLASCYLKQGKYKEAEILYKQV 445 (546)
Q Consensus 379 ~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~-----~~~--------~~~~~~~~~~La~~y~~~g~~~eA~~~~~~a 445 (546)
.|...|..+...|+.+.|+.+|..|-+.+-... |.- ......+.+.||+.|...|++.+|+.+|.++
T Consensus 914 L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 914 LYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 566678888899999999999998877653210 100 1122345677888999999999999888877
Q ss_pred HHh
Q psy597 446 LTR 448 (546)
Q Consensus 446 l~~ 448 (546)
-..
T Consensus 994 qaf 996 (1416)
T KOG3617|consen 994 QAF 996 (1416)
T ss_pred HHH
Confidence 553
No 189
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.21 E-value=3.1e-05 Score=64.48 Aligned_cols=109 Identities=21% Similarity=0.172 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q psy597 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPD 414 (546)
Q Consensus 335 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~ 414 (546)
...++.-|...+..|+|.+|++.|+...... +-.+....+...||.+|+..|++++|+..+++-+++ .|.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ry-----P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL-----hP~ 79 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRY-----PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL-----HPT 79 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-----CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCC
Confidence 5568889999999999999999999988776 445677889999999999999999999999999998 377
Q ss_pred ChHHHHHHHHHHHHHHHcCC---------------HHHHHHHHHHHHHhhhhcc
Q psy597 415 DSNVAKTKNNLASCYLKQGK---------------YKEAEILYKQVLTRAHERE 453 (546)
Q Consensus 415 ~~~~~~~~~~La~~y~~~g~---------------~~eA~~~~~~al~~~~~~~ 453 (546)
+|....+++..|.++..+.. ...|...|++.+...|++.
T Consensus 80 hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 80 HPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred CCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 88889999999999999877 7889999999998877654
No 190
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.20 E-value=2.9e-05 Score=64.68 Aligned_cols=105 Identities=21% Similarity=0.179 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 371 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 371 (546)
.+..++.-|...+..|+|.+|++.|+.....+ +..+....+...++.+|+..|++++|+..+++-+++. +
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ry-----P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh-----P 78 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRY-----PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH-----P 78 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-----CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----C
Confidence 35668899999999999999999999988776 5567778899999999999999999999999999997 7
Q ss_pred CChHHHHHHHHHHHHHHHcCC---------------HHHHHHHHHHHHHH
Q psy597 372 EHPDVAKQLNNLALLCQNQSK---------------YEEVERYYQRALEI 406 (546)
Q Consensus 372 ~~~~~~~~~~~la~~~~~~g~---------------~~eA~~~~~~al~~ 406 (546)
.||....+++..|.+++.+.. ...|...|++.+..
T Consensus 79 ~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 79 THPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred CCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 789999999999999998876 67777777777776
No 191
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.20 E-value=6.5e-05 Score=66.12 Aligned_cols=104 Identities=19% Similarity=0.200 Sum_probs=91.1
Q ss_pred CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCC
Q psy597 208 GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGH 287 (546)
Q Consensus 208 ~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 287 (546)
.-.+..++..++..|..|-..|-+.-|.-.|.+++.+
T Consensus 58 ~l~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai------------------------------------------- 94 (297)
T COG4785 58 ALTDEERAQLLFERGVLYDSLGLRALARNDFSQALAI------------------------------------------- 94 (297)
T ss_pred cCChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhc-------------------------------------------
Confidence 4455678889999999999999999999999999884
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALE 363 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 363 (546)
.|..+.+++.+|..+...|+|+.|.+.|+..+++ +|..-.+..|.|..++.-|+|.-|.+-+.+-..
T Consensus 95 -~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--------Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ 161 (297)
T COG4785 95 -RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--------DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQ 161 (297)
T ss_pred -CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc--------CCcchHHHhccceeeeecCchHhhHHHHHHHHh
Confidence 6888899999999999999999999999999988 566677889999999999999999988776544
No 192
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.19 E-value=3.7e-05 Score=76.48 Aligned_cols=121 Identities=26% Similarity=0.289 Sum_probs=102.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHHHHH
Q psy597 220 NLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNIL 299 (546)
Q Consensus 220 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l 299 (546)
.+-..+...++++.|+.++++..+ ..|. +...+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~--------------------------------------------~~pe---v~~~L 206 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRE--------------------------------------------RDPE---VAVLL 206 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHh--------------------------------------------cCCc---HHHHH
Confidence 344556667899999999988765 2343 45568
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Q psy597 300 ALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQ 379 (546)
Q Consensus 300 a~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 379 (546)
+.++...++..+|+..+.+++.. .|.....+...+..+...++++.|+.+.++++... |....+
T Consensus 207 A~v~l~~~~E~~AI~ll~~aL~~--------~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~ls--------P~~f~~ 270 (395)
T PF09295_consen 207 ARVYLLMNEEVEAIRLLNEALKE--------NPQDSELLNLQAEFLLSKKKYELALEIAKKAVELS--------PSEFET 270 (395)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------chhHHH
Confidence 99999999999999999999965 34447888899999999999999999999999995 999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Q psy597 380 LNNLALLCQNQSKYEEVERYYQRA 403 (546)
Q Consensus 380 ~~~la~~~~~~g~~~eA~~~~~~a 403 (546)
|..|+.+|...|+++.|+..+..+
T Consensus 271 W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 271 WYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHhcCCHHHHHHHHhcC
Confidence 999999999999999999777643
No 193
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=98.14 E-value=0.0031 Score=60.69 Aligned_cols=256 Identities=18% Similarity=0.130 Sum_probs=145.8
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHH
Q psy597 225 YASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYR 304 (546)
Q Consensus 225 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~ 304 (546)
...+|+++.|..++.++-....... .......+..+++.|....
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~------------------------------------~~~~~~La~~~yn~G~~l~ 46 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLD------------------------------------PDMAEELARVCYNIGKSLL 46 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCC------------------------------------cHHHHHHHHHHHHHHHHHH
Confidence 3568999999999999877653211 1233567889999999999
Q ss_pred Hhh-cHHHHHHHHHHHHHHHHH-h-cCCC----CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHH
Q psy597 305 DQN-KYKEAANLLNDALTIREK-T-LGEN----HAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVA 377 (546)
Q Consensus 305 ~~g-~~~~A~~~~~~al~~~~~-~-~g~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 377 (546)
..+ +++.|...++++.++... . .... ......++..++.+|...+.++...+ +.++++..+..+| ++|...
T Consensus 47 ~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~~-~~~~~~ 124 (278)
T PF08631_consen 47 SKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEK-ALNALRLLESEYG-NKPEVF 124 (278)
T ss_pred HcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhCC-CCcHHH
Confidence 999 999999999999999754 1 0111 13456788999999999998865444 5555555544433 233332
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcc
Q psy597 378 KQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGAC 457 (546)
Q Consensus 378 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~ 457 (546)
. ..+ .++...++.+++.+.+.+++....- .............-+ .......|...+...+...........
T Consensus 125 ~--L~l-~il~~~~~~~~~~~~L~~mi~~~~~-----~e~~~~~~l~~i~~l-~~~~~~~a~~~ld~~l~~r~~~~~~~~ 195 (278)
T PF08631_consen 125 L--LKL-EILLKSFDEEEYEEILMRMIRSVDH-----SESNFDSILHHIKQL-AEKSPELAAFCLDYLLLNRFKSSEDQW 195 (278)
T ss_pred H--HHH-HHHhccCChhHHHHHHHHHHHhccc-----ccchHHHHHHHHHHH-HhhCcHHHHHHHHHHHHHHhCCChhHH
Confidence 1 222 2222288899999999988875210 111111111111111 223345666777666653222111100
Q ss_pred c--CCChhhHHHHhhchhhHH--HHHHHHHHHHHHHHcC-CCCHHH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 458 D--GDNKPIWQDRQKNKAKNR--EKYYQRALEIYELKLG-PDDSNV----AKTKNNLASCYLKQGKYKEAEILYKQVLT 527 (546)
Q Consensus 458 ~--~~~~~~~~~~~~~~~~~A--~~~~~~Al~~~~~~~~-~~~~~~----~~~~~~La~~y~~~g~~~~A~~~~~~al~ 527 (546)
. ......+.....++.... .+.....+....+..+ +-.+.. ...+.+.|.-.++.++|+.|..+|+-++.
T Consensus 196 ~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 196 LEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELALH 274 (278)
T ss_pred HHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 0 000111111111222222 3333333333222222 222222 24556778999999999999999998874
No 194
>KOG3617|consensus
Probab=98.07 E-value=0.0043 Score=64.99 Aligned_cols=240 Identities=15% Similarity=0.132 Sum_probs=136.6
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh---cCCCCHH---------HHHHHHHHHHHHHHcCCHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKT---LGENHAA---------VAATLNNLAVLYGKRGKYKEAE 355 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~g~~~~~---------~~~~~~~la~~~~~~g~~~~A~ 355 (546)
+....-..|++.|..+...++.+.|+++|+++-...-.. +.++++. ....|...|......|+.+.|+
T Consensus 853 DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl 932 (1416)
T KOG3617|consen 853 DRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAAL 932 (1416)
T ss_pred cceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHH
Confidence 455666789999999999999999999999863321111 1111111 1234566788888999999999
Q ss_pred HHHHHHHHHHHHh-----cCCC--------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--cCCCChHHH-
Q psy597 356 PLCKRALEIREKV-----LGKE--------HPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELK--LGPDDSNVA- 419 (546)
Q Consensus 356 ~~~~~al~~~~~~-----~~~~--------~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~--~~~~~~~~~- 419 (546)
.+|..|-..+..+ .|+- ......+.+.||..|...|++.+|+.+|.+|-.....+ ...++-..-
T Consensus 933 ~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L 1012 (1416)
T KOG3617|consen 933 SFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRL 1012 (1416)
T ss_pred HHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 9999987765432 0110 11223467789999999999999999998775542211 001111100
Q ss_pred ---------HHHHHHHHHHHHcC-CHHHHHHHHHHH------HHhhh------------hcccCccc--CCChhhHHHHh
Q psy597 420 ---------KTKNNLASCYLKQG-KYKEAEILYKQV------LTRAH------------EREFGACD--GDNKPIWQDRQ 469 (546)
Q Consensus 420 ---------~~~~~La~~y~~~g-~~~eA~~~~~~a------l~~~~------------~~~~~~~~--~~~~~~~~~~~ 469 (546)
.-....|..|...| +++.|..+|.++ ++++- ++-....+ ........+..
T Consensus 1013 ~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~ 1092 (1416)
T KOG3617|consen 1013 ANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFEN 1092 (1416)
T ss_pred HHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Confidence 00112234444554 556666655443 22211 11000000 01111122334
Q ss_pred hchhhHHHHH------HHHHHHHHHHH-----------cC------CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy597 470 KNKAKNREKY------YQRALEIYELK-----------LG------PDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526 (546)
Q Consensus 470 ~~~~~~A~~~------~~~Al~~~~~~-----------~~------~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al 526 (546)
..+++.|... |..|+.+.... .. ++......++..+|.++.++|.|..|-+-|.+|=
T Consensus 1093 ~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAG 1172 (1416)
T KOG3617|consen 1093 NQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAG 1172 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhh
Confidence 4555555433 45555544311 11 1123345688899999999999999998887764
Q ss_pred H
Q psy597 527 T 527 (546)
Q Consensus 527 ~ 527 (546)
.
T Consensus 1173 d 1173 (1416)
T KOG3617|consen 1173 D 1173 (1416)
T ss_pred h
Confidence 3
No 195
>KOG4234|consensus
Probab=98.07 E-value=0.00012 Score=63.63 Aligned_cols=105 Identities=24% Similarity=0.237 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHH
Q psy597 214 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVA 293 (546)
Q Consensus 214 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 293 (546)
.+..+-.-|.-++..|+|++|..-|..|+++++... .....
T Consensus 94 kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~---------------------------------------~e~rs 134 (271)
T KOG4234|consen 94 KADSLKKEGNELFKNGDYEEANSKYQEALESCPSTS---------------------------------------TEERS 134 (271)
T ss_pred HHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcccc---------------------------------------HHHHH
Confidence 345677789999999999999999999999987654 35566
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy597 294 TMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 365 (546)
Q Consensus 294 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 365 (546)
.+|.+.|.++..++.++.|+..+.+++++ .|....++...|.+|..+..|++|+.-|.+.++..
T Consensus 135 Ily~Nraaa~iKl~k~e~aI~dcsKaiel--------~pty~kAl~RRAeayek~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 135 ILYSNRAAALIKLRKWESAIEDCSKAIEL--------NPTYEKALERRAEAYEKMEKYEEALEDYKKILESD 198 (271)
T ss_pred HHHhhhHHHHHHhhhHHHHHHHHHhhHhc--------CchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC
Confidence 77889999999999999999999999998 56668888999999999999999999999999883
No 196
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.07 E-value=1.2e-05 Score=79.55 Aligned_cols=68 Identities=21% Similarity=0.227 Sum_probs=63.2
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 373 HPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVA---KTKNNLASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 373 ~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~---~~~~~La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
.|..+..++++|.+|...|+|++|+..|++++++ +|+.. .+++|+|.+|..+|++++|+.+++++++.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--------~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--------NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5788999999999999999999999999999999 66655 56999999999999999999999999986
No 197
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.05 E-value=0.0005 Score=59.19 Aligned_cols=133 Identities=23% Similarity=0.195 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q psy597 295 MLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHP 374 (546)
Q Consensus 295 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 374 (546)
-.+.||......|++.+|..+|++++.-. -......+..++...+..+++..|...+++..+.. ...
T Consensus 91 nr~rLa~al~elGr~~EA~~hy~qalsG~-------fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~------pa~ 157 (251)
T COG4700 91 NRYRLANALAELGRYHEAVPHYQQALSGI-------FAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN------PAF 157 (251)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhccc-------cCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC------Ccc
Confidence 46788999999999999999999998631 12225678899999999999999999999988773 112
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q psy597 375 DVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRA 449 (546)
Q Consensus 375 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~ 449 (546)
..+.....+|..+..+|++.+|...|+.++..+ | .+.+....+..+.++|+.++|..-+..+.+..
T Consensus 158 r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y--------p-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~ 223 (251)
T COG4700 158 RSPDGHLLFARTLAAQGKYADAESAFEVAISYY--------P-GPQARIYYAEMLAKQGRLREANAQYVAVVDTA 223 (251)
T ss_pred CCCCchHHHHHHHHhcCCchhHHHHHHHHHHhC--------C-CHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 234456778999999999999999999999972 2 23455667888999999999998888777654
No 198
>KOG2300|consensus
Probab=98.05 E-value=0.00063 Score=66.97 Aligned_cols=196 Identities=16% Similarity=0.107 Sum_probs=139.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHH
Q psy597 216 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATM 295 (546)
Q Consensus 216 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 295 (546)
..+-.++.|-...|++.+|+.....+.+.+.+..++. -.....+.+
T Consensus 324 ~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~----------------------------------Llr~~~~~i 369 (629)
T KOG2300|consen 324 ILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPL----------------------------------LLRAHEAQI 369 (629)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchH----------------------------------HHHHhHHHH
Confidence 3455666777788999999988888888776655210 012345677
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChH
Q psy597 296 LNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPD 375 (546)
Q Consensus 296 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 375 (546)
.+.+|......+.|+.|...|..|.+..... ...+.+-.++|.+|...|+-+.-.+.++..-... ...-.....
T Consensus 370 h~LlGlys~sv~~~enAe~hf~~a~k~t~~~-----dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~n-t~s~ssq~l 443 (629)
T KOG2300|consen 370 HMLLGLYSHSVNCYENAEFHFIEATKLTESI-----DLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLN-TNSLSSQRL 443 (629)
T ss_pred HHHHhhHhhhcchHHHHHHHHHHHHHhhhHH-----HHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCC-CCcchHHHH
Confidence 8889999999999999999999999886443 4456777899999999877654333332211000 000000123
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcc
Q psy597 376 VAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHERE 453 (546)
Q Consensus 376 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~ 453 (546)
.+.+++..|...+.++++.+|...+.+.+++.... +.....+-.+..||.+....|+..++.....-+++.+.+..
T Consensus 444 ~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanae--d~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~ 519 (629)
T KOG2300|consen 444 EASILYVYGLFAFKQNDLNEAKRFLRETLKMANAE--DLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIP 519 (629)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchh--hHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCC
Confidence 45678888999999999999999999999986322 22344566778899999999999999999999998876643
No 199
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.02 E-value=0.00041 Score=59.68 Aligned_cols=139 Identities=23% Similarity=0.224 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhH
Q psy597 213 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDV 292 (546)
Q Consensus 213 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 292 (546)
......+.+|......|++.+|...|++++. + .....
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qals------------------------------------------G-~fA~d 123 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALS------------------------------------------G-IFAHD 123 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc------------------------------------------c-ccCCC
Confidence 3455678899999999999999999999986 2 23445
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q psy597 293 ATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKE 372 (546)
Q Consensus 293 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 372 (546)
+.++..++...+..+++..|...+++..+.. .....+.....+|.++...|++.+|...|+.++..+
T Consensus 124 ~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~------pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y------- 190 (251)
T COG4700 124 AAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN------PAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYY------- 190 (251)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHhhcC------CccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhC-------
Confidence 6678899999999999999999999988763 222334567788999999999999999999999985
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 373 HPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYEL 409 (546)
Q Consensus 373 ~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~ 409 (546)
| .+......+..+..+|+.++|..-+....+...+
T Consensus 191 -p-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r 225 (251)
T COG4700 191 -P-GPQARIYYAEMLAKQGRLREANAQYVAVVDTAKR 225 (251)
T ss_pred -C-CHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 3 2445566788899999999998888777665443
No 200
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.01 E-value=2.8e-05 Score=57.96 Aligned_cols=58 Identities=33% Similarity=0.415 Sum_probs=54.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 341 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406 (546)
Q Consensus 341 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 406 (546)
|..+|...++|++|+.++++++.+ +|.....+..+|.++...|++++|+..|+++++.
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 357899999999999999999999 4889999999999999999999999999999988
No 201
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.99 E-value=1.3e-05 Score=58.83 Aligned_cols=66 Identities=32% Similarity=0.395 Sum_probs=56.0
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q psy597 346 GKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNL 425 (546)
Q Consensus 346 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~L 425 (546)
...|++++|+.+|++++... |....++..+|.+|...|++++|...+++++.. .|+....+..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--------~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN--------PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--------DPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT--------TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--------GTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCHHHHHHHH
Confidence 57899999999999999984 888999999999999999999999999999987 56656555555
Q ss_pred HH
Q psy597 426 AS 427 (546)
Q Consensus 426 a~ 427 (546)
+.
T Consensus 66 a~ 67 (68)
T PF14559_consen 66 AQ 67 (68)
T ss_dssp HH
T ss_pred hc
Confidence 54
No 202
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.99 E-value=2.8e-05 Score=76.91 Aligned_cols=71 Identities=18% Similarity=0.155 Sum_probs=62.7
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 331 HAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406 (546)
Q Consensus 331 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 406 (546)
.|..+.+++++|.+|...|+|++|+..|++++++. ++++....+|+|+|.+|..+|++++|+.++++|+++
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-----Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELN-----PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 57778999999999999999999999999999994 222222356999999999999999999999999997
No 203
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.99 E-value=0.038 Score=59.63 Aligned_cols=310 Identities=13% Similarity=0.055 Sum_probs=188.3
Q ss_pred hHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcCchhH---HHhhHHHHH-hhhhhhHHHHHHHH-HHHHhccC
Q psy597 212 PARLRTLHNLVIQYA-SQGRYEVAVPLCKQALEDLEKTSGKYEA---AETLEDCAL-RSRKESYDIVKQAK-VAQILGSG 285 (546)
Q Consensus 212 p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~---a~~~~~~~l-~~~~~~~~~~~~~~-~~~~l~~~ 285 (546)
...+.+.+.+|.+++ ...+++.|..++.+++.+..+ .+-.+. +..+....+ ...... +..... .......
T Consensus 56 ~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~-~~~~d~k~~~~~ll~~i~~~~~~~~--a~~~l~~~I~~~~~- 131 (608)
T PF10345_consen 56 RQEARVRLRLASILLEETENLDLAETYLEKAILLCER-HRLTDLKFRCQFLLARIYFKTNPKA--ALKNLDKAIEDSET- 131 (608)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHHHhcCHHH--HHHHHHHHHHHHhc-
Confidence 356788899999988 789999999999999998877 222211 111111111 111111 222211 1222221
Q ss_pred CCCChhHHHHHHHH-HHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 286 GHDHPDVATMLNIL-ALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 364 (546)
Q Consensus 286 ~~~~~~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 364 (546)
..+.....++..+ ...+...+++..|++.++......... ++......+....+.+....+..+++++...++...
T Consensus 132 -~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~--~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~ 208 (608)
T PF10345_consen 132 -YGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQR--GDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQ 208 (608)
T ss_pred -cCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc--CCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Confidence 1222233333333 333333479999999999999987654 445555666677788888899999999999999877
Q ss_pred HHHh--cCCCChHHHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHHHHHhcCCC-------C-----------------h
Q psy597 365 REKV--LGKEHPDVAKQLNNLAL--LCQNQSKYEEVERYYQRALEIYELKLGPD-------D-----------------S 416 (546)
Q Consensus 365 ~~~~--~~~~~~~~~~~~~~la~--~~~~~g~~~eA~~~~~~al~~~~~~~~~~-------~-----------------~ 416 (546)
.... .+..++....++..+-. ++...|++..+...+++.-.......... + +
T Consensus 209 ~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~ 288 (608)
T PF10345_consen 209 ARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTP 288 (608)
T ss_pred HhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCce
Confidence 6644 22223444555555544 34567887788777766555544332110 0 0
Q ss_pred ----------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcc-cCccc---------------------CCChhh
Q psy597 417 ----------NVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHERE-FGACD---------------------GDNKPI 464 (546)
Q Consensus 417 ----------~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~-~~~~~---------------------~~~~~~ 464 (546)
-.+-+|..-|.++...|..++|.+++.++++...+.. ..... .....+
T Consensus 289 ~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~ 368 (608)
T PF10345_consen 289 LVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQI 368 (608)
T ss_pred eEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHH
Confidence 1233444456667777888899999999998766533 00000 111223
Q ss_pred HHHHhhchhhHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 465 WQDRQKNKAKNREKYYQRALEIYELKLG-PDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 528 (546)
Q Consensus 465 ~~~~~~~~~~~A~~~~~~Al~~~~~~~~-~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~ 528 (546)
|.....+++..+............+... ......+..++..|..+...|+.+.|..+|.+..-.
T Consensus 369 ~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~ 433 (608)
T PF10345_consen 369 WCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFL 433 (608)
T ss_pred HHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHh
Confidence 3355667777777777777665443322 112345677888999999999999999999855533
No 204
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.98 E-value=2.2e-05 Score=58.50 Aligned_cols=62 Identities=27% Similarity=0.386 Sum_probs=57.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhc
Q psy597 383 LALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 452 (546)
Q Consensus 383 la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~ 452 (546)
|..+|...+++++|+.++++++.+ +|..+..+...|.++..+|++.+|...|+++++..|+.
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~ 62 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDD 62 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc
Confidence 357889999999999999999999 88899999999999999999999999999999986643
No 205
>KOG3081|consensus
Probab=97.97 E-value=0.0012 Score=60.26 Aligned_cols=160 Identities=23% Similarity=0.226 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhH
Q psy597 213 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDV 292 (546)
Q Consensus 213 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 292 (546)
.+......-|.+|...|++++|.........
T Consensus 106 sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~------------------------------------------------- 136 (299)
T KOG3081|consen 106 SNLIDLLLAAIIYMHDGDFDEALKALHLGEN------------------------------------------------- 136 (299)
T ss_pred hhHHHHHHhhHHhhcCCChHHHHHHHhccch-------------------------------------------------
Confidence 3334556677889999999999888766322
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHh
Q psy597 293 ATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGK----RGKYKEAEPLCKRALEIREKV 368 (546)
Q Consensus 293 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~ 368 (546)
..+...--.++.+..+++-|...++++.++.+.. ++..||..+.. .+.+.+|.-+|+..-+.+
T Consensus 137 lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~----------tLtQLA~awv~la~ggek~qdAfyifeE~s~k~--- 203 (299)
T KOG3081|consen 137 LEAAALNVQILLKMHRFDLAEKELKKMQQIDEDA----------TLTQLAQAWVKLATGGEKIQDAFYIFEELSEKT--- 203 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH----------HHHHHHHHHHHHhccchhhhhHHHHHHHHhccc---
Confidence 2223333467778889999999999988874322 34444444433 345777777777765543
Q ss_pred cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 369 LGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 447 (546)
Q Consensus 369 ~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~ 447 (546)
+.....++..+.++..+|+|++|...++.++.. ++..+.++.|+..+-...|...++..-+-.-+.
T Consensus 204 -----~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k--------d~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 204 -----PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK--------DAKDPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred -----CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc--------cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 667888999999999999999999999999987 777889999999999999998877765544444
No 206
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.97 E-value=0.003 Score=67.13 Aligned_cols=267 Identities=13% Similarity=-0.001 Sum_probs=167.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHH
Q psy597 214 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVA 293 (546)
Q Consensus 214 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 293 (546)
+++.....++......+|.+|..+..++....+.... .......+
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~-----------------------------------~~~~~l~a 458 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMH-----------------------------------SRQGDLLA 458 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcc-----------------------------------cchhhHHH
Confidence 4455666777777888888888877777664433210 11223345
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q psy597 294 TMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEH 373 (546)
Q Consensus 294 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 373 (546)
...-..|.+....|+++.|+++.+.++...... .......++..+|.+..-.|++++|..+...+.++.++. +..
T Consensus 459 e~~aL~a~val~~~~~e~a~~lar~al~~L~~~---~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~--~~~ 533 (894)
T COG2909 459 EFQALRAQVALNRGDPEEAEDLARLALVQLPEA---AYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQH--DVY 533 (894)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccc---cchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHc--ccH
Confidence 555667888889999999999999999876442 223345678899999999999999999999999998765 333
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q psy597 374 PDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSN---VAKTKNNLASCYLKQGKYKEAEILYKQVLTRAH 450 (546)
Q Consensus 374 ~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~---~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~ 450 (546)
....++....+.++..+|+ -+...-.++.........+..+. ...++..+..++.+ ++.+..-....+....
T Consensus 534 ~l~~~~~~~~s~il~~qGq--~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~ 608 (894)
T COG2909 534 HLALWSLLQQSEILEAQGQ--VARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGS 608 (894)
T ss_pred HHHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhh
Confidence 5566777778999999993 22222233332222222222333 22333344444443 6666666666665543
Q ss_pred hcccCccc---CCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy597 451 EREFGACD---GDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526 (546)
Q Consensus 451 ~~~~~~~~---~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al 526 (546)
........ ....++.+....|+++.|.....+....+.... ......+.++.....+...+|++.+|.....+..
T Consensus 609 ~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~-~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s~ 686 (894)
T COG2909 609 VYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQ-YHVDYLAAAYKVKLILWLAQGDKELAAEWLLKSG 686 (894)
T ss_pred hcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCC-CCchHHHHHHHhhHHHhcccCCHHHHHHHHHhcc
Confidence 32211111 112344457788999999998888877754332 1122233344444455567899999988887743
No 207
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.96 E-value=2.5e-05 Score=57.27 Aligned_cols=56 Identities=34% Similarity=0.600 Sum_probs=50.3
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 388 QNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 388 ~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
...|++++|+..|++++.. .|....++..+|.+|...|++++|...+++++...++
T Consensus 2 l~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred hhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 5789999999999999999 8889999999999999999999999999999886443
No 208
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.95 E-value=0.0014 Score=60.40 Aligned_cols=177 Identities=34% Similarity=0.463 Sum_probs=138.9
Q ss_pred CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCC
Q psy597 210 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDH 289 (546)
Q Consensus 210 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 289 (546)
..+.....+...+..+...+++..++..+..++... ..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------~~ 127 (291)
T COG0457 90 LLPNLAEALLNLGLLLEALGKYEEALELLEKALALD------------------------------------------PD 127 (291)
T ss_pred hccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCC------------------------------------------CC
Confidence 346677888899999999999999999998887631 11
Q ss_pred hhHHHHHHHHHH-HHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy597 290 PDVATMLNILAL-VYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 368 (546)
Q Consensus 290 ~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 368 (546)
+ .......+. ++...|+++.|...+.+++... +........+...+..+...++++.|+..+.+++...
T Consensus 128 ~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--- 197 (291)
T COG0457 128 P--DLAEALLALGALYELGDYEEALELYEKALELD-----PELNELAEALLALGALLEALGRYEEALELLEKALKLN--- 197 (291)
T ss_pred c--chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC---
Confidence 1 222333333 8999999999999999996531 1012345666777777889999999999999999985
Q ss_pred cCCCChH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 369 LGKEHPD-VAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 447 (546)
Q Consensus 369 ~~~~~~~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~ 447 (546)
+. ....+..++..+...++++.|...+..++.. .+.....+..++..+...+.++++...+.+++.
T Consensus 198 -----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 198 -----PDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--------DPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred -----cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--------CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55 5788999999999999999999999999998 454566677788888888889999999999998
Q ss_pred hhhh
Q psy597 448 RAHE 451 (546)
Q Consensus 448 ~~~~ 451 (546)
..+.
T Consensus 265 ~~~~ 268 (291)
T COG0457 265 LDPD 268 (291)
T ss_pred hCcc
Confidence 7543
No 209
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.94 E-value=0.012 Score=56.74 Aligned_cols=170 Identities=13% Similarity=0.056 Sum_probs=110.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHHH
Q psy597 218 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLN 297 (546)
Q Consensus 218 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 297 (546)
...-+....-.|+|+.|..-|+.++. ++....--+.
T Consensus 123 hlLeAQaal~eG~~~~Ar~kfeAMl~--------------------------------------------dPEtRllGLR 158 (531)
T COG3898 123 HLLEAQAALLEGDYEDARKKFEAMLD--------------------------------------------DPETRLLGLR 158 (531)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHhc--------------------------------------------ChHHHHHhHH
Confidence 34445666778999999999988775 2222222222
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChH--
Q psy597 298 ILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPD-- 375 (546)
Q Consensus 298 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-- 375 (546)
.|-.--...|.++.|..|-+.+.... |....+....-...+..|+|+.|+++........ +.+++...
T Consensus 159 gLyleAqr~GareaAr~yAe~Aa~~A--------p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~--vie~~~aeR~ 228 (531)
T COG3898 159 GLYLEAQRLGAREAARHYAERAAEKA--------PQLPWAARATLEARCAAGDWDGALKLVDAQRAAK--VIEKDVAERS 228 (531)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhhc--------cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHH--hhchhhHHHH
Confidence 22233345799999999999998775 3334455555566778899999999988766542 11121111
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q psy597 376 VAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAH 450 (546)
Q Consensus 376 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~ 450 (546)
.+..+...+.... ..+...|...-.+++++ .|+...+-..-+..+++.|+..++-.+++.+.+..|
T Consensus 229 rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL--------~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~eP 294 (531)
T COG3898 229 RAVLLTAKAMSLL-DADPASARDDALEANKL--------APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEP 294 (531)
T ss_pred HHHHHHHHHHHHh-cCChHHHHHHHHHHhhc--------CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCC
Confidence 1222222222222 34577888888888887 677777777778888889998888888888887643
No 210
>KOG2796|consensus
Probab=97.90 E-value=0.00038 Score=63.21 Aligned_cols=127 Identities=19% Similarity=0.167 Sum_probs=100.3
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
+++..+.....+|.+-+..|+.+.|..+|++.-+...+. .+......+..+.+.+|.-.++|..|...|.+.+..
T Consensus 207 ~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL--~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~--- 281 (366)
T KOG2796|consen 207 YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKL--DGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRM--- 281 (366)
T ss_pred CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhh--hccchhHHHHhhhhhheecccchHHHHHHHhhcccc---
Confidence 456667778899999999999999999999877665555 333444567888999999999999999999999877
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q psy597 368 VLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCY 429 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y 429 (546)
++..+.+-++.|.|....|+...|++..+.++.+. |.+...-....||..+|
T Consensus 282 -----D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~-----P~~~l~es~~~nL~tmy 333 (366)
T KOG2796|consen 282 -----DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD-----PRHYLHESVLFNLTTMY 333 (366)
T ss_pred -----CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC-----CccchhhhHHHHHHHHH
Confidence 47788899999999999999999999999998872 22223334455555544
No 211
>KOG2471|consensus
Probab=97.88 E-value=0.00047 Score=67.82 Aligned_cols=273 Identities=17% Similarity=0.071 Sum_probs=168.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChh-
Q psy597 213 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPD- 291 (546)
Q Consensus 213 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 291 (546)
+.+.++...+..++..|+|.+|...+... .+....+ +...|.
T Consensus 238 ~s~~~l~LKsq~eY~~gn~~kA~KlL~~s-ni~~~~g------------------------------------~~~T~q~ 280 (696)
T KOG2471|consen 238 DSSMALLLKSQLEYAHGNHPKAMKLLLVS-NIHKEAG------------------------------------GTITPQL 280 (696)
T ss_pred CCcHHHHHHHHHHHHhcchHHHHHHHHhc-ccccccC------------------------------------ccccchh
Confidence 44567777888888889988888776432 1111111 111222
Q ss_pred -HHHHHHHHHHHHHHhhcHHHHHHHHHHHHH-HHHHhcCC---------CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy597 292 -VATMLNILALVYRDQNKYKEAANLLNDALT-IREKTLGE---------NHAAVAATLNNLAVLYGKRGKYKEAEPLCKR 360 (546)
Q Consensus 292 -~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~g~---------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 360 (546)
....++++|.+++..|.|.-+..+|.+|+. .+...-.+ .......++++.|..|...|++-.|.++|.+
T Consensus 281 ~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~ 360 (696)
T KOG2471|consen 281 SSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQK 360 (696)
T ss_pred hhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHH
Confidence 345568999999999999999999999996 44333111 0122357899999999999999999999999
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHHcCC------------------------------------------------
Q psy597 361 ALEIREKVLGKEHPDVAKQLNNLALLCQNQSK------------------------------------------------ 392 (546)
Q Consensus 361 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~------------------------------------------------ 392 (546)
+...+ ...+..|..+|.++....+
T Consensus 361 av~vf--------h~nPrlWLRlAEcCima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~ 432 (696)
T KOG2471|consen 361 AVHVF--------HRNPRLWLRLAECCIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKL 432 (696)
T ss_pred HHHHH--------hcCcHHHHHHHHHHHHHhhhhhhhhccCCcccccceeeeecccchhheeecccceeccccccCCCcc
Confidence 99987 4456678888887753100
Q ss_pred -HHHHHHHHHHHHHHHHHh---------------c--------------------------CCCChH--------HHHHH
Q psy597 393 -YEEVERYYQRALEIYELK---------------L--------------------------GPDDSN--------VAKTK 422 (546)
Q Consensus 393 -~~eA~~~~~~al~~~~~~---------------~--------------------------~~~~~~--------~~~~~ 422 (546)
.+=|.-+++.++-+.... . ++..|. ...++
T Consensus 433 slefA~vCLrnal~Ll~e~q~~~~~~~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~ 512 (696)
T KOG2471|consen 433 SLEFARVCLRNALYLLNEKQDLGSILSVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIF 512 (696)
T ss_pred ccHHHHHHHHhhhhcCchhhcchhhhhhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHH
Confidence 234555666665543100 0 001111 12345
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHH------------HHHHH-
Q psy597 423 NNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRAL------------EIYEL- 489 (546)
Q Consensus 423 ~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al------------~~~~~- 489 (546)
.+.+.+-+.+|+.-.|+..-.+.+....-............+.+.....+..+|...+.-.+ .-+..
T Consensus 513 A~~ayV~L~Lgd~i~AL~~a~kLLq~~~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~ 592 (696)
T KOG2471|consen 513 ANMAYVELELGDPIKALSAATKLLQLADLSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQW 592 (696)
T ss_pred HHHHHHHHHhcChhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhh
Confidence 66777788999999999999988876432221111112222222333444444443332210 00000
Q ss_pred -----HcC---CC-------CH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q psy597 490 -----KLG---PD-------DS--NVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAH 530 (546)
Q Consensus 490 -----~~~---~~-------~~--~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~ 530 (546)
... +. .+ .....+++||.+|.-+|++++|..++..|..+.+
T Consensus 593 ~~~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~h 650 (696)
T KOG2471|consen 593 WKHTETLDPSTGRTRQSVFLSVEEARGVLFANLAAALALQGHHDQAKSLLTHAATLLH 650 (696)
T ss_pred hccccccCCcCCCCcccccCCHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhh
Confidence 000 00 11 2235678999999999999999999998888766
No 212
>KOG4648|consensus
Probab=97.83 E-value=7.2e-05 Score=70.19 Aligned_cols=95 Identities=19% Similarity=0.222 Sum_probs=86.3
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChH
Q psy597 296 LNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPD 375 (546)
Q Consensus 296 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 375 (546)
+-..|.-|+.+|+|++|+.+|.+++.. .|..+..+.+.|.+|++...|..|..-|..|+.+. ..
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~--------~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--------~~ 163 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAV--------YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD--------KL 163 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhcc--------CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh--------HH
Confidence 445689999999999999999999988 45556788999999999999999999999999984 67
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 376 VAKQLNNLALLCQNQSKYEEVERYYQRALEI 406 (546)
Q Consensus 376 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 406 (546)
...+|...|..-..+|...+|..-++.++++
T Consensus 164 Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 164 YVKAYSRRMQARESLGNNMEAKKDCETVLAL 194 (536)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhHHHHHhh
Confidence 8899999999999999999999999999998
No 213
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.82 E-value=0.0037 Score=61.39 Aligned_cols=211 Identities=12% Similarity=0.056 Sum_probs=137.3
Q ss_pred HhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q psy597 305 DQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLA 384 (546)
Q Consensus 305 ~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 384 (546)
....+..+...+.+.+...+..++......+.+..++=..|....+|+.-+.+.+..-.+- ..+.+....+...+|
T Consensus 111 are~~~g~~~~l~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p----~~~~~~~~~i~~~ya 186 (374)
T PF13281_consen 111 ARERYSGARKELAKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALP----TCDVANQHNIKFQYA 186 (374)
T ss_pred HHHHHhhHHHHHHHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccC----ccchhcchHHHHHHH
Confidence 3555666666677777766666544334445677788888999999998888887765541 011234455667788
Q ss_pred HHHHH---cCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhhhhc
Q psy597 385 LLCQN---QSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ---------GKYKEAEILYKQVLTRAHER 452 (546)
Q Consensus 385 ~~~~~---~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~---------g~~~eA~~~~~~al~~~~~~ 452 (546)
.++.+ .|+.++|+..+..++.. ..+..++++..+|.+|... ...++|+.+|.++..+.+
T Consensus 187 fALnRrn~~gdre~Al~il~~~l~~-------~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~-- 257 (374)
T PF13281_consen 187 FALNRRNKPGDREKALQILLPVLES-------DENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP-- 257 (374)
T ss_pred HHHhhcccCCCHHHHHHHHHHHHhc-------cCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc--
Confidence 88888 99999999999987653 2455677888899988542 247899999999998753
Q ss_pred ccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 453 EFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLG----PDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 528 (546)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~----~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~ 528 (546)
..+...+.+......|..........+....+....+ .+.....+.+..++.+..-.|++++|..+++++++.
T Consensus 258 ---~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 258 ---DYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ---cccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 2233344444444555433333333333312221111 112334556667888889999999999999999987
Q ss_pred hhh
Q psy597 529 AHE 531 (546)
Q Consensus 529 ~~~ 531 (546)
.|.
T Consensus 335 ~~~ 337 (374)
T PF13281_consen 335 KPP 337 (374)
T ss_pred CCc
Confidence 543
No 214
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=97.79 E-value=5e-05 Score=49.48 Aligned_cols=41 Identities=56% Similarity=0.890 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChH
Q psy597 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPD 375 (546)
Q Consensus 335 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 375 (546)
+.++.++|.+|...|++++|+.++++++.+.++++|++||+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 56899999999999999999999999999999999999884
No 215
>KOG4648|consensus
Probab=97.79 E-value=5.1e-05 Score=71.18 Aligned_cols=98 Identities=22% Similarity=0.217 Sum_probs=90.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChH
Q psy597 338 LNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSN 417 (546)
Q Consensus 338 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~ 417 (546)
+-..|.-|+++|.|++|+.+|.+++... |..+..+.|.|..|+++..|..|..-+..|+.+ +..
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~--------P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--------d~~ 163 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVY--------PHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--------DKL 163 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccC--------CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--------hHH
Confidence 3456889999999999999999999984 888889999999999999999999999999999 788
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 418 VAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 418 ~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
...+|...+.+-..+|+..+|.+-++.++.+-|+
T Consensus 164 Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 164 YVKAYSRRMQARESLGNNMEAKKDCETVLALEPK 197 (536)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcc
Confidence 8999999999999999999999999999987664
No 216
>KOG2610|consensus
Probab=97.77 E-value=0.0029 Score=59.65 Aligned_cols=143 Identities=13% Similarity=0.072 Sum_probs=96.4
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
+.|...-++..--.+++..|+.......+++.+... .++-|-.......++..+...|-|++|++..++++++
T Consensus 132 d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w----n~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqi--- 204 (491)
T KOG2610|consen 132 DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW----NADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQI--- 204 (491)
T ss_pred hCchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc----CCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccC---
Confidence 556666666666677777777777777777766542 1445656666667777777888888888888888777
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy597 368 VLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 446 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al 446 (546)
++..+++...++.++...|++.++.++..+.-...+.. .-....-|..-|.++...+.|+.|++.|..-+
T Consensus 205 -----N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s----~mlasHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 205 -----NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQS----WMLASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred -----CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhh----hHHHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 37777777777888888888887777776655443211 22333445556777777778888887777543
No 217
>KOG4642|consensus
Probab=97.76 E-value=9.4e-05 Score=66.11 Aligned_cols=108 Identities=27% Similarity=0.354 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCc
Q psy597 377 AKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGA 456 (546)
Q Consensus 377 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~ 456 (546)
+.-+..-|..|+...+|+.|+.+|.+|+.+ +|..+..+.|-+.||++..+++.+..-..+++++
T Consensus 10 a~qlkE~gnk~f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql-------- 73 (284)
T KOG4642|consen 10 AEQLKEQGNKCFIPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL-------- 73 (284)
T ss_pred HHHHHhccccccchhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--------
Confidence 444555677788888999999999999998 8999999999999999999999999888888875
Q ss_pred ccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhccCC
Q psy597 457 CDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGA 536 (546)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 536 (546)
.|+....++.+|.+......|++|+..+.+|..+.++.++..
T Consensus 74 --------------------------------------~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~ 115 (284)
T KOG4642|consen 74 --------------------------------------DPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTF 115 (284)
T ss_pred --------------------------------------ChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCCC
Confidence 688889999999999999999999999999999998887765
Q ss_pred CC
Q psy597 537 CD 538 (546)
Q Consensus 537 ~~ 538 (546)
.+
T Consensus 116 ~~ 117 (284)
T KOG4642|consen 116 GD 117 (284)
T ss_pred cc
Confidence 43
No 218
>KOG3081|consensus
Probab=97.74 E-value=0.0046 Score=56.58 Aligned_cols=127 Identities=22% Similarity=0.264 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q psy597 294 TMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEH 373 (546)
Q Consensus 294 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 373 (546)
.....-|.+|...|++++|+........+ .+...-..++.++.+++-|....+++.++.+
T Consensus 109 i~~l~aa~i~~~~~~~deAl~~~~~~~~l-------------E~~Al~VqI~lk~~r~d~A~~~lk~mq~ide------- 168 (299)
T KOG3081|consen 109 IDLLLAAIIYMHDGDFDEALKALHLGENL-------------EAAALNVQILLKMHRFDLAEKELKKMQQIDE------- 168 (299)
T ss_pred HHHHHhhHHhhcCCChHHHHHHHhccchH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHccch-------
Confidence 44556678899999999999988774332 2333334677888899999999999888742
Q ss_pred hHHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q psy597 374 PDVAKQLNNLALLCQ----NQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRA 449 (546)
Q Consensus 374 ~~~~~~~~~la~~~~----~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~ 449 (546)
-.++..||..+. ..+++.+|.-+|++.-+. .+..+.+.+.++.|...+|+|++|...++.++...
T Consensus 169 ---d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k--------~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 169 ---DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK--------TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred ---HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc--------cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 122333443333 234577777777766553 45567788999999999999999999999999864
Q ss_pred hh
Q psy597 450 HE 451 (546)
Q Consensus 450 ~~ 451 (546)
+.
T Consensus 238 ~~ 239 (299)
T KOG3081|consen 238 AK 239 (299)
T ss_pred CC
Confidence 43
No 219
>KOG2610|consensus
Probab=97.73 E-value=0.001 Score=62.53 Aligned_cols=167 Identities=16% Similarity=0.124 Sum_probs=107.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHHHHHH
Q psy597 221 LVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILA 300 (546)
Q Consensus 221 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~la 300 (546)
-+......|++.+|...+.+.++.+|...- +......+.... .......-....++..-..+.|....+.-.++
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~d~PtDll----a~kfsh~a~fy~--G~~~~~k~ai~kIip~wn~dlp~~sYv~Gmya 182 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLDDYPTDLL----AVKFSHDAHFYN--GNQIGKKNAIEKIIPKWNADLPCYSYVHGMYA 182 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHHhCchhhh----hhhhhhhHHHhc--cchhhhhhHHHHhccccCCCCcHHHHHHHHHH
Confidence 344455566666666666666665554320 000000000000 00111111222333333556777788888888
Q ss_pred HHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Q psy597 301 LVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQL 380 (546)
Q Consensus 301 ~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 380 (546)
..+...|-|++|.+..++++++ .+....+...++.++...|+++++.++..+.-...+.. ......-|
T Consensus 183 FgL~E~g~y~dAEk~A~ralqi--------N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s----~mlasHNy 250 (491)
T KOG2610|consen 183 FGLEECGIYDDAEKQADRALQI--------NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQS----WMLASHNY 250 (491)
T ss_pred hhHHHhccchhHHHHHHhhccC--------CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhh----hHHHhhhh
Confidence 9999999999999999999988 45567788889999999999999999988876654321 22334456
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 381 NNLALLCQNQSKYEEVERYYQRALE 405 (546)
Q Consensus 381 ~~la~~~~~~g~~~eA~~~~~~al~ 405 (546)
...|.++...+.|+.|+..|.+-+-
T Consensus 251 WH~Al~~iE~aeye~aleIyD~ei~ 275 (491)
T KOG2610|consen 251 WHTALFHIEGAEYEKALEIYDREIW 275 (491)
T ss_pred HHHHHhhhcccchhHHHHHHHHHHH
Confidence 6678888889999999999987543
No 220
>KOG3616|consensus
Probab=97.71 E-value=0.0036 Score=64.64 Aligned_cols=81 Identities=22% Similarity=0.250 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q psy597 337 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDS 416 (546)
Q Consensus 337 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~ 416 (546)
.|-.++.-|...|+|+.|.++|.++-.. .+ --..|.+.|++..|.+.-.++.. ..
T Consensus 767 yy~~iadhyan~~dfe~ae~lf~e~~~~---------~d-------ai~my~k~~kw~da~kla~e~~~---------~e 821 (1636)
T KOG3616|consen 767 YYGEIADHYANKGDFEIAEELFTEADLF---------KD-------AIDMYGKAGKWEDAFKLAEECHG---------PE 821 (1636)
T ss_pred cchHHHHHhccchhHHHHHHHHHhcchh---------HH-------HHHHHhccccHHHHHHHHHHhcC---------ch
Confidence 4445666677777777777776665322 11 11345566677666555544421 33
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHH
Q psy597 417 NVAKTKNNLASCYLKQGKYKEAEILY 442 (546)
Q Consensus 417 ~~~~~~~~La~~y~~~g~~~eA~~~~ 442 (546)
.....|..-+.-+-+.|+|.+|..+|
T Consensus 822 ~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 822 ATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred hHHHHHHHhHHhHHhhcchhhhhhee
Confidence 45566777777777888888887766
No 221
>KOG4642|consensus
Probab=97.69 E-value=0.00013 Score=65.15 Aligned_cols=103 Identities=27% Similarity=0.322 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q psy597 337 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDS 416 (546)
Q Consensus 337 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~ 416 (546)
-+..-|..++.-.+|+.|+.+|.+++.+ +|..+..+.|.+.++.+..+++.+..-.++|+++ +|
T Consensus 12 qlkE~gnk~f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--------~~ 75 (284)
T KOG4642|consen 12 QLKEQGNKCFIPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--------DP 75 (284)
T ss_pred HHHhccccccchhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--------Ch
Confidence 3455577777888999999999999998 4888999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccC
Q psy597 417 NVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFG 455 (546)
Q Consensus 417 ~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~ 455 (546)
+.+...+.+|.+......|++|+..+.++....+...+.
T Consensus 76 N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~ 114 (284)
T KOG4642|consen 76 NLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFT 114 (284)
T ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999999999999998887765543
No 222
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.67 E-value=0.13 Score=55.58 Aligned_cols=238 Identities=14% Similarity=0.082 Sum_probs=154.6
Q ss_pred CChhHHHHHHHHHHHHH-HhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYR-DQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE 366 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 366 (546)
.+...+.++..+|.++. ...+++.|..++++++.++++. .-......+...++.++.+.+... |...+++.++..+
T Consensus 54 ~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~--~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~ 130 (608)
T PF10345_consen 54 SPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERH--RLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSE 130 (608)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHh
Confidence 44556788999999988 6899999999999999997652 223334556677899999998877 9999999999986
Q ss_pred HhcCCCChHHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy597 367 KVLGKEHPDVAKQLNNL-ALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQV 445 (546)
Q Consensus 367 ~~~~~~~~~~~~~~~~l-a~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~a 445 (546)
.. + +.....++..+ ...+...+++..|+..++......... ++......+....+.+....+..+++++...++
T Consensus 131 ~~--~-~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~--~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~ 205 (608)
T PF10345_consen 131 TY--G-HSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQR--GDPAVFVLASLSEALLHLRRGSPDDVLELLQRA 205 (608)
T ss_pred cc--C-chhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc--CCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHH
Confidence 52 1 12222333333 333333489999999999999986543 334444555556677778888899999999998
Q ss_pred HHhhhhcccCcc-cCCChhhH-------HHHhhchhhHHHHHHHHHHHHHHHHcCCC-----------------------
Q psy597 446 LTRAHEREFGAC-DGDNKPIW-------QDRQKNKAKNREKYYQRALEIYELKLGPD----------------------- 494 (546)
Q Consensus 446 l~~~~~~~~~~~-~~~~~~~~-------~~~~~~~~~~A~~~~~~Al~~~~~~~~~~----------------------- 494 (546)
............ .......+ +....|+++.+...+.+.-..+.......
T Consensus 206 ~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~ 285 (608)
T PF10345_consen 206 IAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSG 285 (608)
T ss_pred HHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCC
Confidence 776554311111 11111111 24556666666555444443333222110
Q ss_pred -----------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhc
Q psy597 495 -----------DSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHERE 533 (546)
Q Consensus 495 -----------~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~~~ 533 (546)
..-..-+|..-|......|..++|.++++++++...+..
T Consensus 286 ~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~ 335 (608)
T PF10345_consen 286 GTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLK 335 (608)
T ss_pred CceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhh
Confidence 001123444446666777888899999999999887765
No 223
>KOG1070|consensus
Probab=97.66 E-value=0.0036 Score=69.24 Aligned_cols=212 Identities=15% Similarity=0.121 Sum_probs=165.0
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
.+|..+..|...-..+...++.++|.+.+++|+....-.-+........+|.||=.. -|.-+.-.+.|++|.+++
T Consensus 1453 ssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~---yG~eesl~kVFeRAcqyc-- 1527 (1710)
T KOG1070|consen 1453 SSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENA---YGTEESLKKVFERACQYC-- 1527 (1710)
T ss_pred cCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHh---hCcHHHHHHHHHHHHHhc--
Confidence 467777777777778889999999999999999864111001122233344444444 456677778888888874
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 368 VLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 447 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~ 447 (546)
+....+..|..+|...+++++|.++|+..++-+. .....|..+|..++++.+-+.|...+.+|+.
T Consensus 1528 -------d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--------q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~ 1592 (1710)
T KOG1070|consen 1528 -------DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--------QTRKVWIMYADFLLRQNEAEAARELLKRALK 1592 (1710)
T ss_pred -------chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--------chhhHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 4466788999999999999999999999998742 4567899999999999999999999999999
Q ss_pred hhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 448 RAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 527 (546)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~ 527 (546)
..|... ........+.+....|+.+.+...|+..+.. .|...+.|..+...-.+.|+.+.++.+|++++.
T Consensus 1593 ~lPk~e--Hv~~IskfAqLEFk~GDaeRGRtlfEgll~a--------yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~ 1662 (1710)
T KOG1070|consen 1593 SLPKQE--HVEFISKFAQLEFKYGDAERGRTLFEGLLSA--------YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIE 1662 (1710)
T ss_pred hcchhh--hHHHHHHHHHHHhhcCCchhhHHHHHHHHhh--------CccchhHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 887632 2223334555677889999988888888765 677888999999999999999999999999998
Q ss_pred Hh
Q psy597 528 RA 529 (546)
Q Consensus 528 ~~ 529 (546)
+.
T Consensus 1663 l~ 1664 (1710)
T KOG1070|consen 1663 LK 1664 (1710)
T ss_pred cC
Confidence 63
No 224
>KOG1464|consensus
Probab=97.65 E-value=0.0032 Score=57.56 Aligned_cols=241 Identities=15% Similarity=0.120 Sum_probs=152.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHhh
Q psy597 228 QGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQN 307 (546)
Q Consensus 228 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~g 307 (546)
..++++|+.-|++++++- +....+-..++-.+..+++..|
T Consensus 40 e~~p~~Al~sF~kVlelE----------------------------------------gEKgeWGFKALKQmiKI~f~l~ 79 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELE----------------------------------------GEKGEWGFKALKQMIKINFRLG 79 (440)
T ss_pred ccCHHHHHHHHHHHHhcc----------------------------------------cccchhHHHHHHHHHHHHhccc
Confidence 347899999999999852 2233455677888889999999
Q ss_pred cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q psy597 308 KYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLC 387 (546)
Q Consensus 308 ~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 387 (546)
+|++..+.|.+.+...+.....+... .+.+.+-..-....+.+--..+|+..++..+.. .+.......-..||.+|
T Consensus 80 ~~~eMm~~Y~qlLTYIkSAVTrNySE--KsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdA--KNeRLWFKTNtKLgkl~ 155 (440)
T KOG1464|consen 80 NYKEMMERYKQLLTYIKSAVTRNYSE--KSINSILDYISTSKNMDLLQEFYETTLDALKDA--KNERLWFKTNTKLGKLY 155 (440)
T ss_pred cHHHHHHHHHHHHHHHHHHHhccccH--HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhh--hcceeeeeccchHhhhh
Confidence 99999999999998776653333222 122222222223445555566677666655443 22333445566789999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCCh----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcc--cCCC
Q psy597 388 QNQSKYEEVERYYQRALEIYELKLGPDDS----NVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGAC--DGDN 461 (546)
Q Consensus 388 ~~~g~~~eA~~~~~~al~~~~~~~~~~~~----~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~--~~~~ 461 (546)
+..|.|..-...+++.-..++.--|.++. ....+|..-..+|-.+++-.+-..+|++++.+-...+...+ ...-
T Consensus 156 fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRE 235 (440)
T KOG1464|consen 156 FDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRE 235 (440)
T ss_pred eeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHH
Confidence 99999998888888877777665554433 34455666677888899988888999999886432211100 0011
Q ss_pred hhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcC
Q psy597 462 KPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQG 513 (546)
Q Consensus 462 ~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g 513 (546)
..+..+...|.+..|...|-+|.+-|.....+. ....--|..||..+.+.|
T Consensus 236 CGGKMHlreg~fe~AhTDFFEAFKNYDEsGspR-RttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 236 CGGKMHLREGEFEKAHTDFFEAFKNYDESGSPR-RTTCLKYLVLANMLMKSG 286 (440)
T ss_pred cCCccccccchHHHHHhHHHHHHhcccccCCcc-hhHHHHHHHHHHHHHHcC
Confidence 112336777888888888888877766543321 112223344555555543
No 225
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=97.63 E-value=0.00012 Score=47.64 Aligned_cols=41 Identities=46% Similarity=0.609 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChH
Q psy597 377 AKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSN 417 (546)
Q Consensus 377 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~ 417 (546)
+.+++++|.+|...|++++|+.++++++.+.++.+|+++|+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 56789999999999999999999999999999999988874
No 226
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.62 E-value=0.013 Score=51.37 Aligned_cols=153 Identities=16% Similarity=0.040 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHcCCHH---HHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHH
Q psy597 217 TLHNLVIQYASQGRYE---VAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVA 293 (546)
Q Consensus 217 ~~~~lg~~~~~~g~~~---~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 293 (546)
.....|+-|+...+.+ +|-..|.++++........ . .. .+..+....+....-.
T Consensus 33 ~~~lfGW~ywq~~q~~q~~~AS~~Y~~~i~~~~ak~~~---~--------------~~------~~ekf~~~n~~t~Ya~ 89 (207)
T COG2976 33 LGGLFGWRYWQSHQVEQAQEASAQYQNAIKAVQAKKPK---S--------------IA------AAEKFVQANGKTIYAV 89 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch---h--------------HH------HHHHHHhhccccHHHH
Confidence 3445666676655544 7788888888765432210 0 00 0001111121233344
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q psy597 294 TMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEH 373 (546)
Q Consensus 294 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 373 (546)
.+...+|..+...|++++|+..++.++... .|.....-+-.+||.+....|.+++|+..+.....-
T Consensus 90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~t-----~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~--------- 155 (207)
T COG2976 90 LAALELAKAEVEANNLDKAEAQLKQALAQT-----KDENLKALAALRLARVQLQQKKADAALKTLDTIKEE--------- 155 (207)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccc-----hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc---------
Confidence 556778899999999999999999998653 334455667789999999999999999988765432
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 374 PDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406 (546)
Q Consensus 374 ~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 406 (546)
...+......|.++...|+-++|+..|++++..
T Consensus 156 ~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 156 SWAAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 345556677899999999999999999999997
No 227
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.60 E-value=0.00058 Score=58.87 Aligned_cols=93 Identities=14% Similarity=0.286 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhhhhcccCcccCCChhhHHHHh
Q psy597 393 YEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKY---KEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQ 469 (546)
Q Consensus 393 ~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~---~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 469 (546)
|+.|.+.++..... +|..+..+++-|.++..+.++ .++..+++.++..
T Consensus 7 FE~ark~aea~y~~--------nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK--------------------- 57 (186)
T PF06552_consen 7 FEHARKKAEAAYAK--------NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISK--------------------- 57 (186)
T ss_dssp HHHHHHHHHHHHHH---------TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH---------------------
T ss_pred HHHHHHHHHHHHHh--------CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHH---------------------
Confidence 56677777776666 788899999999998887655 5577777776654
Q ss_pred hchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHHhhhh
Q psy597 470 KNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGK-----------YKEAEILYKQVLTRAHER 532 (546)
Q Consensus 470 ~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~-----------~~~A~~~~~~al~~~~~~ 532 (546)
|++|+.+ +|....++..+|.+|..++. |++|..+|++|....|.+
T Consensus 58 ----------~eeAL~I--------~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~n 113 (186)
T PF06552_consen 58 ----------FEEALKI--------NPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNN 113 (186)
T ss_dssp ----------HHHHHHH---------TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred ----------HHHHHhc--------CCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 6778877 78888899999998877653 566777777777666654
No 228
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.60 E-value=0.0028 Score=65.62 Aligned_cols=178 Identities=22% Similarity=0.203 Sum_probs=123.4
Q ss_pred ChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHH---HHHHHHHHHHH----HcCCHHHHHHHHHHH
Q psy597 289 HPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVA---ATLNNLAVLYG----KRGKYKEAEPLCKRA 361 (546)
Q Consensus 289 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~---~~~~~la~~~~----~~g~~~~A~~~~~~a 361 (546)
+|....++..+|. .|+-+.++..+.++.+. ... ..|... -.|+.....+. .....+.|.+.+...
T Consensus 188 Pp~~~kll~~vGF----~gdR~~GL~~L~~~~~~-~~i---~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~ 259 (468)
T PF10300_consen 188 PPKVLKLLSFVGF----SGDRELGLRLLWEASKS-ENI---RSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEM 259 (468)
T ss_pred CHHHHHHHhhcCc----CCcHHHHHHHHHHHhcc-CCc---chHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHH
Confidence 5666665555553 58999999999988652 111 122111 11222211122 234667788888887
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHH
Q psy597 362 LEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEIL 441 (546)
Q Consensus 362 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~ 441 (546)
...+ |..+..+...|.++...|+.++|+..|++++...... ......+++.+|.++..+++|++|..+
T Consensus 260 ~~~y--------P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~----~Ql~~l~~~El~w~~~~~~~w~~A~~~ 327 (468)
T PF10300_consen 260 LKRY--------PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEW----KQLHHLCYFELAWCHMFQHDWEEAAEY 327 (468)
T ss_pred HHhC--------CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhH----HhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence 7775 8888889999999999999999999999998643332 344567799999999999999999999
Q ss_pred HHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCH------
Q psy597 442 YKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKY------ 515 (546)
Q Consensus 442 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~------ 515 (546)
+....+.. ....+...+..|.++...|+.
T Consensus 328 f~~L~~~s---------------------------------------------~WSka~Y~Y~~a~c~~~l~~~~~~~~~ 362 (468)
T PF10300_consen 328 FLRLLKES---------------------------------------------KWSKAFYAYLAAACLLMLGREEEAKEH 362 (468)
T ss_pred HHHHHhcc---------------------------------------------ccHHHHHHHHHHHHHHhhccchhhhhh
Confidence 99887641 223344556677777888877
Q ss_pred -HHHHHHHHHHHHHhhh
Q psy597 516 -KEAEILYKQVLTRAHE 531 (546)
Q Consensus 516 -~~A~~~~~~al~~~~~ 531 (546)
++|..+|.++-.....
T Consensus 363 ~~~a~~l~~~vp~l~~k 379 (468)
T PF10300_consen 363 KKEAEELFRKVPKLKQK 379 (468)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 7777777777766543
No 229
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.52 E-value=0.0052 Score=63.57 Aligned_cols=126 Identities=15% Similarity=0.017 Sum_probs=100.0
Q ss_pred CCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy597 286 GHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 365 (546)
Q Consensus 286 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 365 (546)
....|..+..++..|.++...|+.++|+..|++++...... .....-+++.+|.++..+++|++|..++.+..+..
T Consensus 260 ~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~----~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s 335 (468)
T PF10300_consen 260 LKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEW----KQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES 335 (468)
T ss_pred HHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhH----HhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc
Confidence 33567888889999999999999999999999988543222 23345678999999999999999999999998763
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHHHHHhcCCCChHHHHHH
Q psy597 366 EKVLGKEHPDVAKQLNNLALLCQNQSKY-------EEVERYYQRALEIYELKLGPDDSNVAKTK 422 (546)
Q Consensus 366 ~~~~~~~~~~~~~~~~~la~~~~~~g~~-------~eA~~~~~~al~~~~~~~~~~~~~~~~~~ 422 (546)
....+...+..|.++...|+. ++|..+|.++-....+..+...|....+.
T Consensus 336 -------~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~E~Fv~ 392 (468)
T PF10300_consen 336 -------KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPLEKFVI 392 (468)
T ss_pred -------ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCChHHHHH
Confidence 355677778889999999999 88888888888887776565555544443
No 230
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=97.43 E-value=0.013 Score=51.89 Aligned_cols=130 Identities=22% Similarity=0.197 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q psy597 310 KEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQN 389 (546)
Q Consensus 310 ~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 389 (546)
.+-++-++.-+..++.. ........++..+|..|...|+++.|++.|.++.+.. .........+.++..+...
T Consensus 13 ~~~~~~Le~elk~~~~n--~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~-----~~~~~~id~~l~~irv~i~ 85 (177)
T PF10602_consen 13 AEELEKLEAELKDAKSN--LGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYC-----TSPGHKIDMCLNVIRVAIF 85 (177)
T ss_pred HHHHHHHHHHHHHHHhc--cchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc-----CCHHHHHHHHHHHHHHHHH
Confidence 33344455555555444 2245567889999999999999999999999988875 3336677888899999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 390 QSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 390 ~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
.|++..+..+..++-.+.... ++..........-|..++..++|.+|-..|-.+...
T Consensus 86 ~~d~~~v~~~i~ka~~~~~~~--~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 86 FGDWSHVEKYIEKAESLIEKG--GDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred hCCHHHHHHHHHHHHHHHhcc--chHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 999999999999999886653 222233344555677778899999999998877653
No 231
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.43 E-value=0.0017 Score=56.04 Aligned_cols=84 Identities=17% Similarity=0.248 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHHHhcCCCChHHHH
Q psy597 351 YKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKY----------EEVERYYQRALEIYELKLGPDDSNVAK 420 (546)
Q Consensus 351 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----------~eA~~~~~~al~~~~~~~~~~~~~~~~ 420 (546)
|+.|.+.++..... +|..+..+++-|.++..+.++ ++|+.-|++|+.+ +|....
T Consensus 7 FE~ark~aea~y~~--------nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I--------~P~~hd 70 (186)
T PF06552_consen 7 FEHARKKAEAAYAK--------NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI--------NPNKHD 70 (186)
T ss_dssp HHHHHHHHHHHHHH---------TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH---------TT-HH
T ss_pred HHHHHHHHHHHHHh--------CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc--------CCchHH
Confidence 45666666666655 388888899999888776443 4555666666666 888999
Q ss_pred HHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhhh
Q psy597 421 TKNNLASCYLKQGK-----------YKEAEILYKQVLTRAH 450 (546)
Q Consensus 421 ~~~~La~~y~~~g~-----------~~eA~~~~~~al~~~~ 450 (546)
+++++|.+|..++. |++|..+|+++....|
T Consensus 71 Alw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P 111 (186)
T PF06552_consen 71 ALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDP 111 (186)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999987653 4555555555555543
No 232
>KOG2471|consensus
Probab=97.43 E-value=0.0093 Score=59.08 Aligned_cols=132 Identities=18% Similarity=0.177 Sum_probs=97.0
Q ss_pred hHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHH
Q psy597 291 DVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAA--VAATLNNLAVLYGKRGKYKEAEPLCKRALE-IREK 367 (546)
Q Consensus 291 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~ 367 (546)
+.+.++...+..++..|+|.+|.+.+...- +.....|.-.|. ....++++|.+++..|.|.-+..+|.+|+. .+.+
T Consensus 238 ~s~~~l~LKsq~eY~~gn~~kA~KlL~~sn-i~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~q 316 (696)
T KOG2471|consen 238 DSSMALLLKSQLEYAHGNHPKAMKLLLVSN-IHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQ 316 (696)
T ss_pred CCcHHHHHHHHHHHHhcchHHHHHHHHhcc-cccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHH
Confidence 345567788899999999999999886542 211111111222 345678999999999999999999999996 3333
Q ss_pred hcCCC---------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q psy597 368 VLGKE---------HPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK 431 (546)
Q Consensus 368 ~~~~~---------~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~ 431 (546)
...+- ......+++|.|..|...|++-.|.++|.++...+. ..+..|..||.|+..
T Consensus 317 L~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh--------~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 317 LRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFH--------RNPRLWLRLAECCIM 381 (696)
T ss_pred HhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHh--------cCcHHHHHHHHHHHH
Confidence 32110 122467899999999999999999999999999954 345678888888764
No 233
>KOG1464|consensus
Probab=97.39 E-value=0.027 Score=51.69 Aligned_cols=236 Identities=14% Similarity=0.160 Sum_probs=145.2
Q ss_pred CCCCChhhHHHhhhc----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCc--hhHHHhhHHHHHhhh
Q psy597 193 LSPTPPSQFAQQVNA----GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGK--YEAAETLEDCALRSR 266 (546)
Q Consensus 193 ~~~~~~~~~~~~~~~----~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~a~~~~~~~l~~~ 266 (546)
....|.+++..+++. +..-.--..++-.+..++++.|+|++-...|.+.+...+....+ .+.......-.+...
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 334555555555443 33344556788999999999999999999999999876654321 111111110001111
Q ss_pred hhhHHHHHHHHHH-HHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCH----HHHHHHHHH
Q psy597 267 KESYDIVKQAKVA-QILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHA----AVAATLNNL 341 (546)
Q Consensus 267 ~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~----~~~~~~~~l 341 (546)
....-....+... ..+.. ..+.......-..+|.+|+..|+|.+-...+.+.-..+...-|.++. ....+|..-
T Consensus 119 ~~m~LLQ~FYeTTL~ALkd-AKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlE 197 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKD-AKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALE 197 (440)
T ss_pred hhhHHHHHHHHHHHHHHHh-hhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhH
Confidence 1111111111110 01111 12333334455678999999999999998888888777766555533 345666666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Q psy597 342 AVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDV-AKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAK 420 (546)
Q Consensus 342 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~ 420 (546)
-.+|....+-.+-..+|++++.+...+ + ||.. ..+.-.=|..+.+.|+|++|-.-|=+|.+-+.....| ......
T Consensus 198 IQmYT~qKnNKkLK~lYeqalhiKSAI--P-HPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGsp-RRttCL 273 (440)
T KOG1464|consen 198 IQMYTEQKNNKKLKALYEQALHIKSAI--P-HPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSP-RRTTCL 273 (440)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhhccC--C-chHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCc-chhHHH
Confidence 788999999999999999999886444 2 3333 2333334667888999999999998888877665322 223344
Q ss_pred HHHHHHHHHHHcC
Q psy597 421 TKNNLASCYLKQG 433 (546)
Q Consensus 421 ~~~~La~~y~~~g 433 (546)
-|..||..+.+.|
T Consensus 274 KYLVLANMLmkS~ 286 (440)
T KOG1464|consen 274 KYLVLANMLMKSG 286 (440)
T ss_pred HHHHHHHHHHHcC
Confidence 4666777777665
No 234
>KOG1463|consensus
Probab=97.38 E-value=0.061 Score=51.09 Aligned_cols=143 Identities=17% Similarity=0.213 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q psy597 294 TMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEH 373 (546)
Q Consensus 294 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 373 (546)
..-..+..+|+..++|.+|+......+.-.++. +|.+.....+..-+.+|+...+..+|...+..|-......+- +
T Consensus 129 ~Learli~Ly~d~~~YteAlaL~~~L~rElKKl--DDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYc--p 204 (411)
T KOG1463|consen 129 SLEARLIRLYNDTKRYTEALALINDLLRELKKL--DDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYC--P 204 (411)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc--ccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhccccc--C
Confidence 344567889999999999999999999988888 777888888888899999999999999998888766544432 2
Q ss_pred hH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHH
Q psy597 374 PD-VAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILY 442 (546)
Q Consensus 374 ~~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~ 442 (546)
|. .+..-..-|.++....+|.-|..||-+|++-+... .+++....++-.+-.|-...+..++--.++
T Consensus 205 PqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~--~~~v~A~~sLKYMlLcKIMln~~ddv~~ll 272 (411)
T KOG1463|consen 205 PQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSL--DDDVKALTSLKYMLLCKIMLNLPDDVAALL 272 (411)
T ss_pred HHHHHHHHHhccceeecccccchHHHHHHHHHcccccc--CCcHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 32 23333344777778899999999999999987665 444555556666666666677766655444
No 235
>KOG3616|consensus
Probab=97.36 E-value=0.03 Score=58.24 Aligned_cols=164 Identities=18% Similarity=0.173 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH------HHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy597 335 AATLNNLAVLYGKRGKYKEAEPLCKR------ALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYE 408 (546)
Q Consensus 335 ~~~~~~la~~~~~~g~~~~A~~~~~~------al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~ 408 (546)
...|-.-|.+|.+..++++|+++|++ ++++.+-.+ +..+...-...|.-+...|+++.|+..|-+|-.+.+
T Consensus 661 ~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfaf---p~evv~lee~wg~hl~~~~q~daainhfiea~~~~k 737 (1636)
T KOG3616|consen 661 GELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAF---PEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIK 737 (1636)
T ss_pred hHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhC---cHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHH
Confidence 45566778888888999999998875 444443321 123344445567777888899988887755433221
Q ss_pred Hh---cC--------------CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhc
Q psy597 409 LK---LG--------------PDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKN 471 (546)
Q Consensus 409 ~~---~~--------------~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (546)
.. .+ .+.......|-.++.-|...|+|+-|.++|.++-. ....+.+|...|
T Consensus 738 aieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~------------~~dai~my~k~~ 805 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADL------------FKDAIDMYGKAG 805 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcch------------hHHHHHHHhccc
Confidence 11 00 11111222345567788888888888888776532 222334455556
Q ss_pred hhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q psy597 472 KAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILY 522 (546)
Q Consensus 472 ~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~ 522 (546)
++..|..... +..+ .......|...+.-+-..|+|.+|..+|
T Consensus 806 kw~da~kla~-------e~~~--~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 806 KWEDAFKLAE-------ECHG--PEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred cHHHHHHHHH-------HhcC--chhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 5555443322 2222 3345566777777777888888877766
No 236
>KOG0545|consensus
Probab=97.36 E-value=0.0048 Score=55.66 Aligned_cols=118 Identities=15% Similarity=0.115 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHH
Q psy597 214 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVA 293 (546)
Q Consensus 214 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 293 (546)
...+++.-|+-++..|+|.+|...|..|+..+....- .-.+....... -.....
T Consensus 177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~l-------------kEkP~e~eW~e-------------Ldk~~t 230 (329)
T KOG0545|consen 177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQL-------------KEKPGEPEWLE-------------LDKMIT 230 (329)
T ss_pred hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHh-------------ccCCCChHHHH-------------HHHhhh
Confidence 4567899999999999999999999999987654430 00000000000 012234
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy597 294 TMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 365 (546)
Q Consensus 294 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 365 (546)
..+.+.+.++...|+|-++++.....+.. +|....+|+..|.+....-+.++|..-|.+++++.
T Consensus 231 pLllNy~QC~L~~~e~yevleh~seiL~~--------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 231 PLLLNYCQCLLKKEEYYEVLEHCSEILRH--------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred HHHHhHHHHHhhHHHHHHHHHHHHHHHhc--------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 56788899999999999999999999977 67779999999999999999999999999999983
No 237
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.35 E-value=0.014 Score=49.98 Aligned_cols=130 Identities=22% Similarity=0.127 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHH
Q psy597 214 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVA 293 (546)
Q Consensus 214 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 293 (546)
....+...|......|+.+.++..+.+++.++....-.......+....... -.....
T Consensus 5 ~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~----------------------l~~~~~ 62 (146)
T PF03704_consen 5 RFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERER----------------------LRELYL 62 (146)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHH----------------------HHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHH----------------------HHHHHH
Confidence 3445555677777889999999999999998764331100000000000000 123345
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q psy597 294 TMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEH 373 (546)
Q Consensus 294 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 373 (546)
.++..++..+...|++++|+..+.+++.. +|..-.++..+-.+|...|++..|+..|++......+-+|..+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~--------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~P 134 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALAL--------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEP 134 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS---
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCc
Confidence 67888899999999999999999999998 6777889999999999999999999999999988877666543
No 238
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.34 E-value=0.026 Score=49.43 Aligned_cols=101 Identities=22% Similarity=0.137 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q psy597 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPD 414 (546)
Q Consensus 335 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~ 414 (546)
..+...+|..+...|++++|+..++.++... .|......+-.+||.+...+|.+++|+..+.....
T Consensus 89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t-----~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--------- 154 (207)
T COG2976 89 VLAALELAKAEVEANNLDKAEAQLKQALAQT-----KDENLKALAALRLARVQLQQKKADAALKTLDTIKE--------- 154 (207)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHccc-----hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc---------
Confidence 3445677888999999999999999998764 23345567778999999999999999988765433
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q psy597 415 DSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRA 449 (546)
Q Consensus 415 ~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~ 449 (546)
+...+..-...|.++...|+.++|...|++++...
T Consensus 155 ~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 155 ESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred ccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 34455556678999999999999999999999864
No 239
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.34 E-value=0.043 Score=55.03 Aligned_cols=133 Identities=22% Similarity=0.223 Sum_probs=98.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHHHHH
Q psy597 220 NLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNIL 299 (546)
Q Consensus 220 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l 299 (546)
.+.....+..+++.-+...++|+++ .|+.+.+|..|
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei--------------------------------------------~pdCAdAYILL 208 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEI--------------------------------------------NPDCADAYILL 208 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHh--------------------------------------------hhhhhHHHhhc
Confidence 3444455677888888888888874 46677777777
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCC-----------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy597 300 ALVYRDQNKYKEAANLLNDALTIREKTLGENH-----------------AAVAATLNNLAVLYGKRGKYKEAEPLCKRAL 362 (546)
Q Consensus 300 a~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~-----------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 362 (546)
|.-. ..-..+|..+|+++++..+..++.+. .....+-..+|.+..+.|+.++|++.++..+
T Consensus 209 AEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLl 286 (539)
T PF04184_consen 209 AEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLL 286 (539)
T ss_pred cccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 6522 23357888888888888777655431 1124456789999999999999999999998
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy597 363 EIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRAL 404 (546)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al 404 (546)
+.. ...+...+..+|..++...+.|.++...+.+--
T Consensus 287 ke~------p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 287 KEF------PNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred hhC------CccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 764 112467789999999999999999999888753
No 240
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.31 E-value=0.14 Score=50.49 Aligned_cols=206 Identities=16% Similarity=0.087 Sum_probs=117.4
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCchhHHH--hhHHHHHhhhhhhHHHHHHHHHHHHhccCC-CCChhHHHHHHHHHHHH
Q psy597 227 SQGRYEVAVPLCKQALEDLEKTSGKYEAAE--TLEDCALRSRKESYDIVKQAKVAQILGSGG-HDHPDVATMLNILALVY 303 (546)
Q Consensus 227 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~--~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~la~~~ 303 (546)
....|..+.....+.+.......+..+... .+... +-.+.+..+.-........+.... .+.+....+....|.++
T Consensus 111 are~~~g~~~~l~~~L~~i~~rLd~~~~ls~div~~l-llSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafAL 189 (374)
T PF13281_consen 111 ARERYSGARKELAKELRRIRQRLDDPELLSPDIVINL-LLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFAL 189 (374)
T ss_pred HHHHHhhHHHHHHHHHHHHHHhhCCHhhcChhHHHHH-HHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHH
Confidence 345555555666666665555544433211 11111 112222222222222222222211 12344556677888888
Q ss_pred HH---hhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHhcCC
Q psy597 304 RD---QNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKR---------GKYKEAEPLCKRALEIREKVLGK 371 (546)
Q Consensus 304 ~~---~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~ 371 (546)
.+ .|+.++|+..+..++... .+..++++..+|.+|... ...++|+..|.++.++.
T Consensus 190 nRrn~~gdre~Al~il~~~l~~~-------~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~------ 256 (374)
T PF13281_consen 190 NRRNKPGDREKALQILLPVLESD-------ENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE------ 256 (374)
T ss_pred hhcccCCCHHHHHHHHHHHHhcc-------CCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC------
Confidence 88 899999999999876542 334466788888877543 23566777777776662
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HH---HHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 372 EHPDVAKQLNNLALLCQNQSKYEEVERYYQRAL-EI---YELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 447 (546)
Q Consensus 372 ~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al-~~---~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~ 447 (546)
+ ....=.|++.++...|...+...-.++.. .+ ..+....+.....+.+..++.+..-.|++++|...+++++.
T Consensus 257 --~-~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 257 --P-DYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred --c-cccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 2 33444677777777776554443343333 11 11111112334455666788888899999999999999998
Q ss_pred hh
Q psy597 448 RA 449 (546)
Q Consensus 448 ~~ 449 (546)
..
T Consensus 334 l~ 335 (374)
T PF13281_consen 334 LK 335 (374)
T ss_pred cC
Confidence 64
No 241
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.30 E-value=0.012 Score=50.55 Aligned_cols=109 Identities=25% Similarity=0.225 Sum_probs=81.3
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCC--------------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy597 297 NILALVYRDQNKYKEAANLLNDALTIREKTLGEN--------------HAAVAATLNNLAVLYGKRGKYKEAEPLCKRAL 362 (546)
Q Consensus 297 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~--------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 362 (546)
...|......|+...++..+.+++.+++..+-++ ......++..++..+...|++++|+..+.+++
T Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l 89 (146)
T PF03704_consen 10 VREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRAL 89 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 3345555666788888888888888775432111 11234567778888999999999999999999
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 363 EIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGP 413 (546)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~ 413 (546)
.. +|..-.++..+-.+|...|++.+|+..|++....+..-+|.
T Consensus 90 ~~--------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~ 132 (146)
T PF03704_consen 90 AL--------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGI 132 (146)
T ss_dssp HH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS-
T ss_pred hc--------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCc
Confidence 99 58899999999999999999999999999999988876554
No 242
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.30 E-value=0.033 Score=55.78 Aligned_cols=129 Identities=19% Similarity=0.231 Sum_probs=99.6
Q ss_pred HHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC-------
Q psy597 301 LVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEH------- 373 (546)
Q Consensus 301 ~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------- 373 (546)
.-.++..++..-++.-.+|+++. |..+.+|..||.- ...-..+|+.+|+++++..+..++.+.
T Consensus 176 q~AWRERnp~aRIkaA~eALei~--------pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~ 245 (539)
T PF04184_consen 176 QKAWRERNPQARIKAAKEALEIN--------PDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGH 245 (539)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhh--------hhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccc
Confidence 33446678888999999999985 5557777777652 233578999999999998887766531
Q ss_pred ----------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy597 374 ----------PDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYK 443 (546)
Q Consensus 374 ----------~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~ 443 (546)
.....+...+|.+..+.|+.++|++.++..++.. ...+...++.+|..+++..+.|.++..++.
T Consensus 246 ~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~------p~~~~l~IrenLie~LLelq~Yad~q~lL~ 319 (539)
T PF04184_consen 246 FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEF------PNLDNLNIRENLIEALLELQAYADVQALLA 319 (539)
T ss_pred hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhC------CccchhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 1124566789999999999999999999998761 122466789999999999999999998877
Q ss_pred HH
Q psy597 444 QV 445 (546)
Q Consensus 444 ~a 445 (546)
+-
T Consensus 320 kY 321 (539)
T PF04184_consen 320 KY 321 (539)
T ss_pred Hh
Confidence 64
No 243
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.25 E-value=0.006 Score=55.75 Aligned_cols=103 Identities=21% Similarity=0.238 Sum_probs=83.2
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC-----ChHHH
Q psy597 345 YGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPD-----DSNVA 419 (546)
Q Consensus 345 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~-----~~~~~ 419 (546)
+.....+++|+..|.-|+-...-. +.++...+..+..+|++|...|+.+....++++|++.+....... .-+..
T Consensus 87 ~~~~Rt~~~ai~~YkLAll~~~~~-~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~ 165 (214)
T PF09986_consen 87 FSGERTLEEAIESYKLALLCAQIK-KEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEA 165 (214)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHH
Confidence 334457889999998888765433 344457789999999999999999999999999999887764322 33556
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 420 KTKNNLASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 420 ~~~~~La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
.+.+.+|.++.+.|++++|..+|.+++..
T Consensus 166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 166 TLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 78899999999999999999999999975
No 244
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.23 E-value=0.27 Score=49.03 Aligned_cols=91 Identities=19% Similarity=0.188 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q psy597 311 EAANLLNDALTIREKTLG--ENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQ 388 (546)
Q Consensus 311 ~A~~~~~~al~~~~~~~g--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 388 (546)
......+..+......+. .........+...+.+..+.|+++.|...+.++....... ....+.+....+.+++
T Consensus 120 ~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~----~~~~~~v~~e~akllw 195 (352)
T PF02259_consen 120 DDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSS----ESLLPRVFLEYAKLLW 195 (352)
T ss_pred cchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcc----cCCCcchHHHHHHHHH
Confidence 334445555555444422 1245567889999999999999999999999987653111 1224566777899999
Q ss_pred HcCCHHHHHHHHHHHHH
Q psy597 389 NQSKYEEVERYYQRALE 405 (546)
Q Consensus 389 ~~g~~~eA~~~~~~al~ 405 (546)
..|+..+|+..++..+.
T Consensus 196 ~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 196 AQGEQEEAIQKLRELLK 212 (352)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999998888
No 245
>KOG0545|consensus
Probab=97.23 E-value=0.006 Score=55.05 Aligned_cols=114 Identities=20% Similarity=0.196 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCC---CCHH-------HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGE---NHAA-------VAATLNNLAVLYGKRGKYKEAEPLCKRA 361 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~---~~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~a 361 (546)
...++..-|+-++..|+|.+|...|..|+...+...-. ..|. ....+.|++.|+...|+|-++++.+...
T Consensus 177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei 256 (329)
T KOG0545|consen 177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI 256 (329)
T ss_pred hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence 45678888999999999999999999999877654222 2222 3456889999999999999999999999
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Q psy597 362 LEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKT 421 (546)
Q Consensus 362 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~ 421 (546)
+.. +|....+|+..|.++...=+.++|..-|.+++++ +|....+
T Consensus 257 L~~--------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l--------dpslasv 300 (329)
T KOG0545|consen 257 LRH--------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL--------DPSLASV 300 (329)
T ss_pred Hhc--------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc--------ChhhHHH
Confidence 988 5999999999999999999999999999999998 7765544
No 246
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.027 Score=52.13 Aligned_cols=227 Identities=12% Similarity=0.049 Sum_probs=121.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHHHH
Q psy597 219 HNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNI 298 (546)
Q Consensus 219 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 298 (546)
..+++-.....++++|+..|.+.+..--... .......-.+...
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~d------------------------------------ek~~nEqE~tvle 50 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKD------------------------------------EKTLNEQEATVLE 50 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChh------------------------------------hhhhhHHHHHHHH
Confidence 3456667788899999999988876300000 0011223345666
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHH
Q psy597 299 LALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVL-YGKRGKYKEAEPLCKRALEIREKVLGKEHPDVA 377 (546)
Q Consensus 299 la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 377 (546)
++.+|...|++..-.+.....-...... ..|....+...+-.- -.....++.-+..+...++.+.+. .......
T Consensus 51 l~~lyv~~g~~~~l~~~i~~sre~m~~f---tk~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rE--kr~fLr~ 125 (421)
T COG5159 51 LFKLYVSKGDYCSLGDTITSSREAMEDF---TKPKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADRE--KRKFLRL 125 (421)
T ss_pred HHHHHHhcCCcchHHHHHHhhHHHHHHh---cchhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 7777877777665544444443333222 123333333333222 233455666777777776665332 0011122
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcc---c
Q psy597 378 KQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHERE---F 454 (546)
Q Consensus 378 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~---~ 454 (546)
..-..+..+++..|+|.+|+......+.-+++. .|.+.....+..-..+|....+..++...+..+-..+...- .
T Consensus 126 ~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~--DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpq 203 (421)
T COG5159 126 ELECKLIYLLYKTGKYSDALALINPLLHELKKY--DDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQ 203 (421)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhh--cCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHH
Confidence 233456667777888888887777777666665 55666666677777777777777777666655544332110 0
Q ss_pred CcccCCChhhHHHHhhchhhHHHHHHHHHHHHHH
Q psy597 455 GACDGDNKPIWQDRQKNKAKNREKYYQRALEIYE 488 (546)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~ 488 (546)
.........|..+....++..|..+|-+|++.|.
T Consensus 204 lqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft 237 (421)
T COG5159 204 LQAQLDLLSGILHCDDRDYKTASSYFIEALEGFT 237 (421)
T ss_pred HHHHHHHhccceeeccccchhHHHHHHHHHhccc
Confidence 0000111112223444556666666666665543
No 247
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.21 E-value=0.051 Score=43.37 Aligned_cols=120 Identities=23% Similarity=0.219 Sum_probs=85.8
Q ss_pred HHHHHHHHHHH--HHHhhcHHHHHHHHHHHHHHHHHhcCCC---C-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy597 292 VATMLNILALV--YRDQNKYKEAANLLNDALTIREKTLGEN---H-AAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 365 (546)
Q Consensus 292 ~~~~~~~la~~--~~~~g~~~~A~~~~~~al~~~~~~~g~~---~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 365 (546)
++.+|..|+.. ...-|-|++|...+.+|+++.+.+.... + -..+-++..|+..+..+|+|++++....+++..+
T Consensus 6 Va~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YF 85 (144)
T PF12968_consen 6 VAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYF 85 (144)
T ss_dssp HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 44556555544 3446889999999999999987763222 1 1235678889999999999999999999999988
Q ss_pred HHhcCCCChH----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q psy597 366 EKVLGKEHPD----VAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLG 412 (546)
Q Consensus 366 ~~~~~~~~~~----~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~ 412 (546)
.+. |.-+.+ .+.+.++.|..+...|+.++|+..|+.+-++.....|
T Consensus 86 NRR-GEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKG 135 (144)
T PF12968_consen 86 NRR-GELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKG 135 (144)
T ss_dssp HHH---TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S
T ss_pred hhc-cccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcC
Confidence 665 222222 3445667889999999999999999999998665433
No 248
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.19 E-value=0.00028 Score=43.41 Aligned_cols=33 Identities=48% Similarity=0.783 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHH
Q psy597 399 YYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAE 439 (546)
Q Consensus 399 ~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~ 439 (546)
+|++|+++ +|+.+.+++++|.+|...|++++|+
T Consensus 1 ~y~kAie~--------~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIEL--------NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHH--------CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 47899999 9999999999999999999999986
No 249
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.19 E-value=0.00097 Score=41.01 Aligned_cols=33 Identities=30% Similarity=0.512 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q psy597 499 AKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 531 (546)
Q Consensus 499 ~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~ 531 (546)
+.++.++|.+|..+|++++|+.+|++++++.|+
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 357899999999999999999999999999875
No 250
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.18 E-value=0.26 Score=47.96 Aligned_cols=241 Identities=12% Similarity=0.051 Sum_probs=155.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHHH
Q psy597 218 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLN 297 (546)
Q Consensus 218 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 297 (546)
+..+-......|.++.|+.+...+... -|...++..
T Consensus 157 LRgLyleAqr~GareaAr~yAe~Aa~~--------------------------------------------Ap~l~WA~~ 192 (531)
T COG3898 157 LRGLYLEAQRLGAREAARHYAERAAEK--------------------------------------------APQLPWAAR 192 (531)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhh--------------------------------------------ccCCchHHH
Confidence 334444456789999999999998773 345555555
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChH
Q psy597 298 ILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAA--TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPD 375 (546)
Q Consensus 298 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 375 (546)
..-...+..|+++.|+++.+....... .+++...... .+...+.... .-+...|......+.++. |+
T Consensus 193 AtLe~r~~~gdWd~AlkLvd~~~~~~v--ie~~~aeR~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL~--------pd 261 (531)
T COG3898 193 ATLEARCAAGDWDGALKLVDAQRAAKV--IEKDVAERSRAVLLTAKAMSLL-DADPASARDDALEANKLA--------PD 261 (531)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHh--hchhhHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhcC--------Cc
Confidence 555677788999999999987765422 1222222222 2222233232 346888899888888884 77
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccC
Q psy597 376 VAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFG 455 (546)
Q Consensus 376 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~ 455 (546)
....-..-+..++..|+.-++-..++.+.+. .-+|... .+|....--+.++.-++++-.+..-. ..
T Consensus 262 lvPaav~AAralf~d~~~rKg~~ilE~aWK~------ePHP~ia-------~lY~~ar~gdta~dRlkRa~~L~slk-~n 327 (531)
T COG3898 262 LVPAAVVAARALFRDGNLRKGSKILETAWKA------EPHPDIA-------LLYVRARSGDTALDRLKRAKKLESLK-PN 327 (531)
T ss_pred cchHHHHHHHHHHhccchhhhhhHHHHHHhc------CCChHHH-------HHHHHhcCCCcHHHHHHHHHHHHhcC-cc
Confidence 7777777889999999999999999999887 3355544 33443333344555555554432111 01
Q ss_pred cccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHhhhhcc
Q psy597 456 ACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ-GKYKEAEILYKQVLTRAHEREF 534 (546)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~-g~~~~A~~~~~~al~~~~~~~~ 534 (546)
............+..|++..|....+.+... .|. ..++..|+.+-... |+-.++..++-++++.=.+..+
T Consensus 328 naes~~~va~aAlda~e~~~ARa~Aeaa~r~--------~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPaW 398 (531)
T COG3898 328 NAESSLAVAEAALDAGEFSAARAKAEAAARE--------APR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPAW 398 (531)
T ss_pred chHHHHHHHHHHHhccchHHHHHHHHHHhhh--------Cch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCcc
Confidence 1111222233355667777777776666655 333 45778889888776 9999999999999986555544
Q ss_pred CC
Q psy597 535 GA 536 (546)
Q Consensus 535 ~~ 536 (546)
..
T Consensus 399 ~a 400 (531)
T COG3898 399 TA 400 (531)
T ss_pred cc
Confidence 33
No 251
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.18 E-value=0.00069 Score=44.61 Aligned_cols=42 Identities=26% Similarity=0.292 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q psy597 378 KQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLAS 427 (546)
Q Consensus 378 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~ 427 (546)
.++..+|.+|...|++++|++.|+++++. +|+...++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--------~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL--------DPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCCHHHHHHhhh
Confidence 46789999999999999999999999999 8888888888875
No 252
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.14 E-value=0.016 Score=52.97 Aligned_cols=100 Identities=24% Similarity=0.292 Sum_probs=80.4
Q ss_pred hhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC-----ChHHHHHH
Q psy597 306 QNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKE-----HPDVAKQL 380 (546)
Q Consensus 306 ~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----~~~~~~~~ 380 (546)
...+++|+..|.-|+-.+.-. +.++...+..+..+|.+|...|+.+....++++|++.+++.+... ..+...++
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~-~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIK-KEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 346778888888777665443 344557788999999999999999998899999988887765432 23557788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 381 NNLALLCQNQSKYEEVERYYQRALEI 406 (546)
Q Consensus 381 ~~la~~~~~~g~~~eA~~~~~~al~~ 406 (546)
+.+|.++.+.|++++|..+|.+.+..
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 99999999999999999999999886
No 253
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.14 E-value=0.0011 Score=40.66 Aligned_cols=33 Identities=24% Similarity=0.374 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q psy597 499 AKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 531 (546)
Q Consensus 499 ~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~ 531 (546)
+.+++.+|.+|..+|++++|+.+|++++++.|+
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 357899999999999999999999999999875
No 254
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.12 E-value=0.02 Score=55.15 Aligned_cols=136 Identities=13% Similarity=0.076 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCC
Q psy597 295 MLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGK-RGKYKEAEPLCKRALEIREKVLGKEH 373 (546)
Q Consensus 295 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~ 373 (546)
+|..+.....+.+..+.|..+|.+|+.. ......+|...|.+.+. .++.+.|..+|+.+++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~--------~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f-------- 66 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKD--------KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF-------- 66 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCC--------CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--------
Confidence 4666677777888899999999999732 23335678888999666 566677999999999987
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 374 PDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 374 ~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
+.....+......+...|+.+.|...|++++... +........|......-...|+.+....+++++....++
T Consensus 67 ~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l-----~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 67 PSDPDFWLEYLDFLIKLNDINNARALFERAISSL-----PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTS-----SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-----CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 6667777788888899999999999999998761 111213557777888888899999999999999988765
No 255
>KOG0551|consensus
Probab=97.11 E-value=0.033 Score=52.78 Aligned_cols=108 Identities=19% Similarity=0.121 Sum_probs=94.7
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy597 331 HAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELK 410 (546)
Q Consensus 331 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~ 410 (546)
....+..+-.-|+-|++..+|..|+.+|.++|..- -++..-.+..|.|.|-+....|+|-.|+.-..+++.+
T Consensus 77 p~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~k----c~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~---- 148 (390)
T KOG0551|consen 77 PHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKK----CADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL---- 148 (390)
T ss_pred hHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhc----CCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence 33456777788999999999999999999998763 1444557889999999999999999999999999999
Q ss_pred cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q psy597 411 LGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAH 450 (546)
Q Consensus 411 ~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~ 450 (546)
+|....+++.-|.|++.+.++++|..++++.+.+..
T Consensus 149 ----~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 149 ----KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDD 184 (390)
T ss_pred ----CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 999999999999999999999999999999887643
No 256
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=97.09 E-value=0.029 Score=49.74 Aligned_cols=112 Identities=15% Similarity=0.084 Sum_probs=89.8
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
.......++..+|..|...|+++.|++.|.++.+.+ .........+.++..+....|++.....+..++-...+.
T Consensus 31 ~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~-----~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~ 105 (177)
T PF10602_consen 31 GKESIRMALEDLADHYCKIGDLEEALKAYSRARDYC-----TSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK 105 (177)
T ss_pred chHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc-----CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence 456677889999999999999999999999988764 334567888999999999999999999999999888755
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 368 VLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 406 (546)
. ++..........-|..+...++|..|-..|-.+...
T Consensus 106 ~--~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 106 G--GDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred c--chHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 2 322333344555677778889999999999877654
No 257
>KOG0551|consensus
Probab=97.05 E-value=0.0085 Score=56.59 Aligned_cols=108 Identities=19% Similarity=0.221 Sum_probs=95.5
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
.....+.-+-.-|+-|+...+|..|+..|.+.+..- . +|....+..|.|.|.+....|+|..|+.-+.+++.+
T Consensus 76 ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~k--c--~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~--- 148 (390)
T KOG0551|consen 76 EPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKK--C--ADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL--- 148 (390)
T ss_pred ChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhc--C--CCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 445578888889999999999999999999998752 2 556667888999999999999999999999999998
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy597 368 VLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIY 407 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 407 (546)
.|....+++.=|.++..+.++.+|..+++..+.+.
T Consensus 149 -----~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 149 -----KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred -----CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 59999999999999999999999999999887763
No 258
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.04 E-value=0.0015 Score=40.78 Aligned_cols=31 Identities=39% Similarity=0.574 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q psy597 501 TKNNLASCYLKQGKYKEAEILYKQVLTRAHE 531 (546)
Q Consensus 501 ~~~~La~~y~~~g~~~~A~~~~~~al~~~~~ 531 (546)
++.+||.+|...|++++|+.+|++++.+.++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 4789999999999999999999998877654
No 259
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.02 E-value=0.0018 Score=39.81 Aligned_cols=30 Identities=43% Similarity=0.573 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 377 AKQLNNLALLCQNQSKYEEVERYYQRALEI 406 (546)
Q Consensus 377 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 406 (546)
+.+|+++|.+|..+|++++|+.+|++++++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 457899999999999999999999999998
No 260
>KOG2053|consensus
Probab=97.00 E-value=0.021 Score=60.82 Aligned_cols=111 Identities=21% Similarity=0.207 Sum_probs=85.8
Q ss_pred HhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q psy597 305 DQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLA 384 (546)
Q Consensus 305 ~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 384 (546)
..+++.+|.....+.+.. +|....+...-|.++.++|+.++|..+++..-.. .+..-.++..+-
T Consensus 21 d~~qfkkal~~~~kllkk--------~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~--------~~~D~~tLq~l~ 84 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKK--------HPNALYAKVLKALSLFRLGKGDEALKLLEALYGL--------KGTDDLTLQFLQ 84 (932)
T ss_pred hhHHHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccC--------CCCchHHHHHHH
Confidence 467888998888888866 5666777788899999999999999666544333 234566778889
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHH
Q psy597 385 LLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEI 440 (546)
Q Consensus 385 ~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~ 440 (546)
.+|..+|++++|..+|++++.. .|. ......+=.+|.+-+.|.+-.+
T Consensus 85 ~~y~d~~~~d~~~~~Ye~~~~~--------~P~-eell~~lFmayvR~~~yk~qQk 131 (932)
T KOG2053|consen 85 NVYRDLGKLDEAVHLYERANQK--------YPS-EELLYHLFMAYVREKSYKKQQK 131 (932)
T ss_pred HHHHHHhhhhHHHHHHHHHHhh--------CCc-HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987 565 5566666777777777765443
No 261
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=96.99 E-value=0.018 Score=45.13 Aligned_cols=82 Identities=24% Similarity=0.267 Sum_probs=63.0
Q ss_pred HHHhhcHHHHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Q psy597 303 YRDQNKYKEAANLLNDALTIREKTLGEN-HAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLN 381 (546)
Q Consensus 303 ~~~~g~~~~A~~~~~~al~~~~~~~g~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 381 (546)
....|+|..|.+.+.+..+......... ......++.++|.++...|++++|+..+++++.+.++. +|......++.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~--~D~~~l~~al~ 85 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN--GDRRCLAYALS 85 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH--CCHHHHHHHHH
Confidence 4567999999999999999887762222 11456678899999999999999999999999999887 44445555555
Q ss_pred HHHHH
Q psy597 382 NLALL 386 (546)
Q Consensus 382 ~la~~ 386 (546)
.+..+
T Consensus 86 ~~~~l 90 (94)
T PF12862_consen 86 WLANL 90 (94)
T ss_pred HHHHH
Confidence 55443
No 262
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=96.96 E-value=0.021 Score=44.74 Aligned_cols=82 Identities=23% Similarity=0.223 Sum_probs=63.4
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Q psy597 345 YGKRGKYKEAEPLCKRALEIREKVLGKE-HPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKN 423 (546)
Q Consensus 345 ~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~ 423 (546)
....|+|..|.+.+.+..+......... ......++.++|.++...|++++|+..+++|+.+.++. .|......++.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~--~D~~~l~~al~ 85 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN--GDRRCLAYALS 85 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH--CCHHHHHHHHH
Confidence 4578999999999999999876653222 12456778899999999999999999999999999887 44555555555
Q ss_pred HHHHH
Q psy597 424 NLASC 428 (546)
Q Consensus 424 ~La~~ 428 (546)
.+..+
T Consensus 86 ~~~~l 90 (94)
T PF12862_consen 86 WLANL 90 (94)
T ss_pred HHHHH
Confidence 55544
No 263
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.95 E-value=0.062 Score=42.87 Aligned_cols=123 Identities=19% Similarity=0.102 Sum_probs=86.7
Q ss_pred HHHHHHH--HHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHH
Q psy597 216 RTLHNLV--IQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVA 293 (546)
Q Consensus 216 ~~~~~lg--~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 293 (546)
.+|..++ .-....|-|++|..-|++|.+.....+..- .-......+
T Consensus 8 ~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eE--------------------------------aFDh~GFDA 55 (144)
T PF12968_consen 8 MAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEE--------------------------------AFDHDGFDA 55 (144)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS-----------------------------------HHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHh--------------------------------hcccccHHH
Confidence 4444443 445667999999999999999876655100 001123457
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q psy597 294 TMLNILALVYRDQNKYKEAANLLNDALTIREKTL---GENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 370 (546)
Q Consensus 294 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 370 (546)
.++..|+.++...|+|++++..-.+++..+.+.. .......+.+.++.|..+...|+.++|+..|+.+-+......|
T Consensus 56 ~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKG 135 (144)
T PF12968_consen 56 FCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKG 135 (144)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcC
Confidence 7888999999999999999999999999876641 1123445667788999999999999999999999988755543
No 264
>KOG2053|consensus
Probab=96.91 E-value=0.19 Score=53.94 Aligned_cols=182 Identities=21% Similarity=0.149 Sum_probs=111.1
Q ss_pred hhHHHhhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHH
Q psy597 199 SQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKV 278 (546)
Q Consensus 199 ~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~ 278 (546)
.++....+....+|+..-+...-|..+++.|++++|..++ +++..
T Consensus 27 kal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~L-e~~~~---------------------------------- 71 (932)
T KOG2053|consen 27 KALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLL-EALYG---------------------------------- 71 (932)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHH-hhhcc----------------------------------
Confidence 3555566666778888888888888999999999998444 44432
Q ss_pred HHHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q psy597 279 AQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLC 358 (546)
Q Consensus 279 ~~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 358 (546)
..+..-..+-.+-.+|...|++++|..+|++++..+ |. -..+..+-.+|.+.+.|.+-.+.-
T Consensus 72 ---------~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~--------P~-eell~~lFmayvR~~~yk~qQkaa 133 (932)
T KOG2053|consen 72 ---------LKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKY--------PS-EELLYHLFMAYVREKSYKKQQKAA 133 (932)
T ss_pred ---------CCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC--------Cc-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122245567788899999999999999999999774 33 445666667777877776654443
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHH---------HHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q psy597 359 KRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVER---------YYQRALEIYELKLGPDDSNVAKTKNNLASCY 429 (546)
Q Consensus 359 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~---------~~~~al~~~~~~~~~~~~~~~~~~~~La~~y 429 (546)
-+..+.. +..| ...|..+..+.......+.+.. .+++.++. .| .-...+... ..-.++
T Consensus 134 ~~LyK~~-----pk~~--yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~----~g-k~~s~aE~~-Lyl~iL 200 (932)
T KOG2053|consen 134 LQLYKNF-----PKRA--YYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEK----KG-KIESEAEII-LYLLIL 200 (932)
T ss_pred HHHHHhC-----Cccc--chHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhcc----CC-ccchHHHHH-HHHHHH
Confidence 3333332 2223 2334444555555544444443 22222221 11 111222222 223456
Q ss_pred HHcCCHHHHHHHHHHHH
Q psy597 430 LKQGKYKEAEILYKQVL 446 (546)
Q Consensus 430 ~~~g~~~eA~~~~~~al 446 (546)
..+|++++|.+.+..-+
T Consensus 201 ~~~~k~~eal~~l~~~l 217 (932)
T KOG2053|consen 201 ELQGKYQEALEFLAITL 217 (932)
T ss_pred HhcccHHHHHHHHHHHH
Confidence 67899999999885433
No 265
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.24 Score=46.05 Aligned_cols=222 Identities=17% Similarity=0.108 Sum_probs=138.0
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHH----HHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q psy597 298 ILALVYRDQNKYKEAANLLNDALTI----REKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEH 373 (546)
Q Consensus 298 ~la~~~~~~g~~~~A~~~~~~al~~----~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 373 (546)
.+|.-....+++++|+..|.+.+.. .++. ....-.+...++.+|...|++..-.+......+...... .
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~----~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ft---k 80 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKT----LNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFT---K 80 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhh----hhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhc---c
Confidence 4556666778999999999888765 2211 223345788999999999999877766666655554431 1
Q ss_pred hHHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhc
Q psy597 374 PDVAKQLNNLAL-LCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 452 (546)
Q Consensus 374 ~~~~~~~~~la~-~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~ 452 (546)
|....+...+-. .-.....++.-+..+...++...+- .........-..++.++++.|+|.+|+......+.-....
T Consensus 81 ~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rE--kr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~ 158 (421)
T COG5159 81 PKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADRE--KRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKY 158 (421)
T ss_pred hhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhh
Confidence 333333333332 2234567788888888888775433 0011223344567889999999999999998888765542
Q ss_pred c--cCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q psy597 453 E--FGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSN-VAKTKNNLASCYLKQGKYKEAEILYKQVLTRA 529 (546)
Q Consensus 453 ~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~-~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~ 529 (546)
. .........-...+....+...+...+..|.......+-| |. .+..-..-|.++..-.+|.-|..||-++++-+
T Consensus 159 DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCP--pqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egf 236 (421)
T COG5159 159 DDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCP--PQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGF 236 (421)
T ss_pred cCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCC--HHHHHHHHHhccceeeccccchhHHHHHHHHHhcc
Confidence 2 2222223333344566666666666666665554444332 22 22222334566777889999999999998765
Q ss_pred h
Q psy597 530 H 530 (546)
Q Consensus 530 ~ 530 (546)
.
T Consensus 237 t 237 (421)
T COG5159 237 T 237 (421)
T ss_pred c
Confidence 3
No 266
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.88 E-value=0.56 Score=46.74 Aligned_cols=142 Identities=13% Similarity=0.036 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhccc
Q psy597 375 DVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREF 454 (546)
Q Consensus 375 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~ 454 (546)
..+..+..++.+....|+++.|..++.++..... ......+.+....+.+....|+..+|+..++..+........
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~----~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~ 219 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNP----SSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNI 219 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCC----cccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcc
Confidence 4445566666666666776666666666555410 111224555666666666677766676666666652211110
Q ss_pred CcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHH
Q psy597 455 GACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ------GKYKEAEILYKQVLTR 528 (546)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~------g~~~~A~~~~~~al~~ 528 (546)
..........+... . +... .............+.++..+|...... +..+++...|.++.+.
T Consensus 220 ~~~~~~~~~~~~~~---~-------~~~~--~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~ 287 (352)
T PF02259_consen 220 DSISNAELKSGLLE---S-------LEVI--SSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKL 287 (352)
T ss_pred ccccHHHHhhcccc---c-------cccc--cccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHh
Confidence 00000000000000 0 0000 000000011234566777788877777 8888888888888887
Q ss_pred hhhh
Q psy597 529 AHER 532 (546)
Q Consensus 529 ~~~~ 532 (546)
.|..
T Consensus 288 ~~~~ 291 (352)
T PF02259_consen 288 DPSW 291 (352)
T ss_pred ChhH
Confidence 7643
No 267
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.87 E-value=0.0016 Score=42.87 Aligned_cols=42 Identities=38% Similarity=0.456 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q psy597 336 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLAL 385 (546)
Q Consensus 336 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 385 (546)
.++..+|.+|...|++++|+..|+++++.. |+...++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~--------P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALD--------PDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------cCCHHHHHHhhh
Confidence 468899999999999999999999999984 777888888775
No 268
>KOG1463|consensus
Probab=96.86 E-value=0.24 Score=47.25 Aligned_cols=147 Identities=13% Similarity=0.095 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcCCC
Q psy597 294 TMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYG-KRGKYKEAEPLCKRALEIREKVLGKE 372 (546)
Q Consensus 294 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~ 372 (546)
.....+|..|...|++.+=.......-..+... ..+..+.....+-..+. .-+....-+.++...++...+. +.
T Consensus 49 ~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v---~KakaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~e--kR 123 (411)
T KOG1463|consen 49 QSILELGDLLAKEGDAEELRDLITSLRPFLSSV---SKAKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKRE--KR 123 (411)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHH--hH
Confidence 344556666666666655444444433333221 11222223333322222 2233445555555555554322 00
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 373 HPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 447 (546)
Q Consensus 373 ~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~ 447 (546)
....-..-..+..+|...++|.+|+......+.-.++. .|.+....++..=..+|+...+..+|...+..|-.
T Consensus 124 tFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKl--DDK~lLvev~llESK~y~~l~Nl~KakasLTsART 196 (411)
T KOG1463|consen 124 TFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKL--DDKILLVEVHLLESKAYHALRNLPKAKASLTSART 196 (411)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc--ccccceeeehhhhhHHHHHHhcchhHHHHHHHHHH
Confidence 11112233455666667777777777666666665555 44455555555556666666666666665555443
No 269
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.82 E-value=0.0031 Score=38.64 Aligned_cols=33 Identities=24% Similarity=0.374 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 419 AKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 419 ~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
+.+++.+|.+|..+|++++|+.+|++++.+.|+
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 357899999999999999999999999998654
No 270
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.79 E-value=0.0033 Score=39.24 Aligned_cols=31 Identities=39% Similarity=0.574 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 421 TKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 421 ~~~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
++.+||.+|..+|++++|+.+|++++.+..+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 4789999999999999999999998876443
No 271
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.74 E-value=0.0012 Score=40.53 Aligned_cols=32 Identities=50% Similarity=0.812 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHH
Q psy597 480 YQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAE 519 (546)
Q Consensus 480 ~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~ 519 (546)
|++|+++ +|..+.+++++|.+|...|++++|+
T Consensus 2 y~kAie~--------~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIEL--------NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHH--------CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 6778877 8999999999999999999999986
No 272
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.73 E-value=0.0043 Score=38.02 Aligned_cols=32 Identities=25% Similarity=0.397 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q psy597 500 KTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 531 (546)
Q Consensus 500 ~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~ 531 (546)
.++..+|.+|..+|++++|..+|++++++.|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 57889999999999999999999999999873
No 273
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.66 E-value=0.022 Score=54.77 Aligned_cols=134 Identities=16% Similarity=0.096 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHH
Q psy597 217 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATML 296 (546)
Q Consensus 217 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 296 (546)
+|..+.....+.+..+.|..+|.+|++ .......+|
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~--------------------------------------------~~~~~~~vy 38 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARK--------------------------------------------DKRCTYHVY 38 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC--------------------------------------------CCCS-THHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHc--------------------------------------------CCCCCHHHH
Confidence 455666666677778888888888864 233445667
Q ss_pred HHHHHHHHH-hhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChH
Q psy597 297 NILALVYRD-QNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPD 375 (546)
Q Consensus 297 ~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 375 (546)
...|.+-+. .++.+.|..+|+.++..+.. + ...|......+...|+.+.|..+|++++... +....
T Consensus 39 ~~~A~~E~~~~~d~~~A~~Ife~glk~f~~-----~---~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l-----~~~~~ 105 (280)
T PF05843_consen 39 VAYALMEYYCNKDPKRARKIFERGLKKFPS-----D---PDFWLEYLDFLIKLNDINNARALFERAISSL-----PKEKQ 105 (280)
T ss_dssp HHHHHHHHHTCS-HHHHHHHHHHHHHHHTT---------HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTS-----SCHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHCCC-----C---HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-----CchhH
Confidence 777888666 56667799999999988632 2 5556666778889999999999999998763 11121
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy597 376 VAKQLNNLALLCQNQSKYEEVERYYQRALEIY 407 (546)
Q Consensus 376 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 407 (546)
...+|......-...|+.+.....++++.+.+
T Consensus 106 ~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~ 137 (280)
T PF05843_consen 106 SKKIWKKFIEFESKYGDLESVRKVEKRAEELF 137 (280)
T ss_dssp CHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 35677778888888999999999999998873
No 274
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=96.55 E-value=0.71 Score=43.46 Aligned_cols=95 Identities=15% Similarity=0.050 Sum_probs=75.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q psy597 348 RGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLAS 427 (546)
Q Consensus 348 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~ 427 (546)
...-...++++.+|++.+.+. +...........+|..|+..|++++|..+|+.+...+++- +.......++..+..
T Consensus 151 ~~hs~~iI~lL~~A~~~f~~~--~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~e--gW~~l~~~~l~~l~~ 226 (247)
T PF11817_consen 151 VDHSKLIIELLEKAYEQFKKY--GQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRRE--GWWSLLTEVLWRLLE 226 (247)
T ss_pred cchHHHHHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC--CcHHHHHHHHHHHHH
Confidence 344567788999999888766 3345566677889999999999999999999998887764 445567788889999
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q psy597 428 CYLKQGKYKEAEILYKQVL 446 (546)
Q Consensus 428 ~y~~~g~~~eA~~~~~~al 446 (546)
|+...|+.+..+.+.-+.+
T Consensus 227 Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 227 CAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHhCCHHHHHHHHHHHh
Confidence 9999999998887665543
No 275
>KOG1550|consensus
Probab=96.52 E-value=0.11 Score=55.17 Aligned_cols=135 Identities=23% Similarity=0.234 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCC
Q psy597 213 ARLRTLHNLVIQYASQ-----GRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGH 287 (546)
Q Consensus 213 ~~~~~~~~lg~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 287 (546)
.+..+.+.+|.+|..- .+.+.|+.+|+.+...+.+..
T Consensus 242 g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a-------------------------------------- 283 (552)
T KOG1550|consen 242 GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAA-------------------------------------- 283 (552)
T ss_pred cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHH--------------------------------------
Confidence 3455666777776653 578888888888776311110
Q ss_pred CChhHHHHHHHHHHHHHHhh-----cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC---CHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQN-----KYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRG---KYKEAEPLCK 359 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~ 359 (546)
......+.+.+|.+|.... ++..|..+|.++... ++ ..+.+.+|.++..-. ++..|..+|.
T Consensus 284 -~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~------g~----~~a~~~lg~~~~~g~~~~d~~~A~~yy~ 352 (552)
T KOG1550|consen 284 -TKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL------GN----PDAQYLLGVLYETGTKERDYRRAFEYYS 352 (552)
T ss_pred -hhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc------CC----chHHHHHHHHHHcCCccccHHHHHHHHH
Confidence 1113346778888888743 678899999998875 22 457788888887766 5789999999
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Q psy597 360 RALEIREKVLGKEHPDVAKQLNNLALLCQN----QSKYEEVERYYQRALEI 406 (546)
Q Consensus 360 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~~ 406 (546)
.|... ....+.+++|.+|.. .-+...|..+|+++.+.
T Consensus 353 ~Aa~~----------G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~ 393 (552)
T KOG1550|consen 353 LAAKA----------GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEK 393 (552)
T ss_pred HHHHc----------CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHc
Confidence 98765 245677888888764 35789999999999886
No 276
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.47 E-value=0.89 Score=43.70 Aligned_cols=222 Identities=18% Similarity=0.112 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHH---hcCchhHHHhhH-------HHHHhhhhhhHHHHHHHHHHHH
Q psy597 213 ARLRTLHNLVIQYASQG-RYEVAVPLCKQALEDLEK---TSGKYEAAETLE-------DCALRSRKESYDIVKQAKVAQI 281 (546)
Q Consensus 213 ~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~---~~~~~~~a~~~~-------~~~l~~~~~~~~~~~~~~~~~~ 281 (546)
.-.+.+++.|......+ +++.|+.+++++.+++.. ..........+. ..++-.........+.......
T Consensus 33 ~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~ 112 (278)
T PF08631_consen 33 ELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRL 112 (278)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 45678999999999999 999999999999999755 221111111111 1111111111122222222223
Q ss_pred hccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy597 282 LGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRA 361 (546)
Q Consensus 282 l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 361 (546)
+....+++|.. +...-.+....++.+.+.+.+.+++....-. ... .........-+.. .....|...+...
T Consensus 113 l~~e~~~~~~~---~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~----e~~-~~~~l~~i~~l~~-~~~~~a~~~ld~~ 183 (278)
T PF08631_consen 113 LESEYGNKPEV---FLLKLEILLKSFDEEEYEEILMRMIRSVDHS----ESN-FDSILHHIKQLAE-KSPELAAFCLDYL 183 (278)
T ss_pred HHHhCCCCcHH---HHHHHHHHhccCChhHHHHHHHHHHHhcccc----cch-HHHHHHHHHHHHh-hCcHHHHHHHHHH
Confidence 32223333332 2222222333677777777777777653110 111 1111111111122 2345666666666
Q ss_pred HHHHHHhcCCCChH--HHHHHHHHHHHHHHcCCHHHH--HHHHHHHHHHHHHhcC-CCChHH----HHHHHHHHHHHHHc
Q psy597 362 LEIREKVLGKEHPD--VAKQLNNLALLCQNQSKYEEV--ERYYQRALEIYELKLG-PDDSNV----AKTKNNLASCYLKQ 432 (546)
Q Consensus 362 l~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~eA--~~~~~~al~~~~~~~~-~~~~~~----~~~~~~La~~y~~~ 432 (546)
+...-.. .++ ........-......++.... ++.....+.......+ +-.+.. ...+.+.|.-.++.
T Consensus 184 l~~r~~~----~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~ 259 (278)
T PF08631_consen 184 LLNRFKS----SEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKA 259 (278)
T ss_pred HHHHhCC----ChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 5443111 122 111111111112222233333 4444444443333222 222222 23456678889999
Q ss_pred CCHHHHHHHHHHHHH
Q psy597 433 GKYKEAEILYKQVLT 447 (546)
Q Consensus 433 g~~~eA~~~~~~al~ 447 (546)
++|+.|..+|+-++.
T Consensus 260 k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 260 KNYDEAIEWYELALH 274 (278)
T ss_pred cCHHHHHHHHHHHHH
Confidence 999999999998774
No 277
>KOG0985|consensus
Probab=96.43 E-value=0.31 Score=53.01 Aligned_cols=203 Identities=17% Similarity=0.140 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 371 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 371 (546)
.+.+|..+|.+-...|...+|++.|-+|- + +..|.....+....|.|++-++++..|.+..+...-
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyikad----------D---ps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i- 1168 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKAD----------D---PSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI- 1168 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhcC----------C---cHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc-
Confidence 45678999999999999999999887752 2 234667777888899999999998887665422100
Q ss_pred CChHHHHH---------------------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q psy597 372 EHPDVAKQ---------------------LNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYL 430 (546)
Q Consensus 372 ~~~~~~~~---------------------~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~ 430 (546)
......+ ....|.-++..|.|+.|.-+|. ...-+..||..+.
T Consensus 1169 -d~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~----------------~vSN~a~La~TLV 1231 (1666)
T KOG0985|consen 1169 -DSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYS----------------NVSNFAKLASTLV 1231 (1666)
T ss_pred -hHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHH----------------HhhhHHHHHHHHH
Confidence 0000111 1223444444555554444432 2233556788888
Q ss_pred HcCCHHHHHHHHHHHHHhh--hh--------ccc--CcccCCChhhHH--HHhhchhhHHHHHHHHHHHHHHHHcCCCCH
Q psy597 431 KQGKYKEAEILYKQVLTRA--HE--------REF--GACDGDNKPIWQ--DRQKNKAKNREKYYQRALEIYELKLGPDDS 496 (546)
Q Consensus 431 ~~g~~~eA~~~~~~al~~~--~~--------~~~--~~~~~~~~~~~~--~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~ 496 (546)
.+|+|+.|....+++-..- .+ ..+ ......+....+ .-..-.+.+-.++|++.+.+++..+|-..
T Consensus 1232 ~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLER- 1310 (1666)
T KOG0985|consen 1232 YLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLER- 1310 (1666)
T ss_pred HHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhH-
Confidence 8888988888777764321 00 000 000011111111 12222334445667777777776666432
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 497 NVAKTKNNLASCYLKQGKYKEAEILYKQVLT 527 (546)
Q Consensus 497 ~~~~~~~~La~~y~~~g~~~~A~~~~~~al~ 527 (546)
.....+..||.+|.+ -++++-.++++-...
T Consensus 1311 AHMgmfTELaiLYsk-ykp~km~EHl~LFws 1340 (1666)
T KOG0985|consen 1311 AHMGMFTELAILYSK-YKPEKMMEHLKLFWS 1340 (1666)
T ss_pred HHHHHHHHHHHHHHh-cCHHHHHHHHHHHHH
Confidence 233445566666643 456666665554443
No 278
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.30 E-value=0.0073 Score=36.57 Aligned_cols=32 Identities=31% Similarity=0.604 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q psy597 500 KTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 531 (546)
Q Consensus 500 ~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~ 531 (546)
.+++.+|.+|...|++++|...|+++++.+|+
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 36789999999999999999999999998875
No 279
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.28 Score=46.16 Aligned_cols=129 Identities=19% Similarity=0.120 Sum_probs=87.6
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChH
Q psy597 296 LNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPD 375 (546)
Q Consensus 296 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 375 (546)
-..-+.-....|++.+|...|..++... +....+...++.+|...|+.+.|...+...=.-. ...
T Consensus 137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~--------~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~-------~~~ 201 (304)
T COG3118 137 ALAEAKELIEAEDFGEAAPLLKQALQAA--------PENSEAKLLLAECLLAAGDVEAAQAILAALPLQA-------QDK 201 (304)
T ss_pred HHHHhhhhhhccchhhHHHHHHHHHHhC--------cccchHHHHHHHHHHHcCChHHHHHHHHhCcccc-------hhh
Confidence 3445666778899999999999999884 4447788999999999999999998887632211 011
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 376 VAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 376 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
....+...-.++.......+....-.+ +.. +|....+.+.+|..|...|++++|.+.+-..+..
T Consensus 202 ~~~~l~a~i~ll~qaa~~~~~~~l~~~-~aa--------dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 202 AAHGLQAQIELLEQAAATPEIQDLQRR-LAA--------DPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHH-HHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 111111111233333333333322222 222 7778888999999999999999999998887775
No 280
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.23 E-value=0.6 Score=45.22 Aligned_cols=115 Identities=22% Similarity=0.230 Sum_probs=81.8
Q ss_pred hHHHHHHHHHHHHHH----hhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC-------CHHHHHHHHH
Q psy597 291 DVATMLNILALVYRD----QNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRG-------KYKEAEPLCK 359 (546)
Q Consensus 291 ~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g-------~~~~A~~~~~ 359 (546)
..+.+.+.+|.+|.. ..++.+|..+|.+|... ++.+. ..+...+|.+|..-+ +...|...|.
T Consensus 107 g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~------g~~~a-~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~ 179 (292)
T COG0790 107 GLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKL------GNVEA-ALAMYRLGLAYLSGLQALAVAYDDKKALYLYR 179 (292)
T ss_pred ccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHc------CChhH-HHHHHHHHHHHHcChhhhcccHHHHhHHHHHH
Confidence 345567778888877 45899999999999876 22221 345777787777642 2336777777
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC
Q psy597 360 RALEIREKVLGKEHPDVAKQLNNLALLCQN----QSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQG 433 (546)
Q Consensus 360 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g 433 (546)
++-... ...+..++|.+|.. ..++.+|..+|.+|.+. .. ....+.++ ++...|
T Consensus 180 ~aa~~~----------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~--------g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 180 KAAELG----------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ--------GD--GAACYNLG-LMYLNG 236 (292)
T ss_pred HHHHhc----------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--------CC--HHHHHHHH-HHHhcC
Confidence 776652 45677888887765 44899999999999886 22 66777888 666666
No 281
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.23 E-value=0.8 Score=44.35 Aligned_cols=128 Identities=20% Similarity=0.230 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHh----hcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHH
Q psy597 294 TMLNILALVYRDQ----NKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGK----RGKYKEAEPLCKRALEIR 365 (546)
Q Consensus 294 ~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~ 365 (546)
.....++.+|... .+..+|..+|..+... ..+.+.+.||.+|.. ..++.+|..+|.++....
T Consensus 74 ~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~----------g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g 143 (292)
T COG0790 74 AALALLGQMYGAGKGVSRDKTKAADWYRCAAAD----------GLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLG 143 (292)
T ss_pred HHHHHHHHHHHhccCccccHHHHHHHHHHHhhc----------ccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcC
Confidence 4566666666553 4578888888855432 235677889999887 459999999999998873
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH----cCC
Q psy597 366 EKVLGKEHPDVAKQLNNLALLCQNQS-------KYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK----QGK 434 (546)
Q Consensus 366 ~~~~~~~~~~~~~~~~~la~~~~~~g-------~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~----~g~ 434 (546)
++.-..+...+|.+|..-+ +...|...|.++... . ...+..++|.+|.. ..+
T Consensus 144 -------~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~--------~--~~~a~~~lg~~y~~G~Gv~~d 206 (292)
T COG0790 144 -------NVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAEL--------G--NPDAQLLLGRMYEKGLGVPRD 206 (292)
T ss_pred -------ChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHh--------c--CHHHHHHHHHHHHcCCCCCcC
Confidence 2222455778888777642 233677777777765 1 55677888888865 348
Q ss_pred HHHHHHHHHHHHHh
Q psy597 435 YKEAEILYKQVLTR 448 (546)
Q Consensus 435 ~~eA~~~~~~al~~ 448 (546)
+.+|..+|.++-..
T Consensus 207 ~~~A~~wy~~Aa~~ 220 (292)
T COG0790 207 LKKAFRWYKKAAEQ 220 (292)
T ss_pred HHHHHHHHHHHHHC
Confidence 89999999988774
No 282
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.21 E-value=0.014 Score=35.71 Aligned_cols=31 Identities=26% Similarity=0.381 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q psy597 420 KTKNNLASCYLKQGKYKEAEILYKQVLTRAH 450 (546)
Q Consensus 420 ~~~~~La~~y~~~g~~~eA~~~~~~al~~~~ 450 (546)
.++..+|.+|..+|++++|..+|++++++.+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5789999999999999999999999999865
No 283
>KOG4322|consensus
Probab=96.18 E-value=1.5 Score=43.37 Aligned_cols=196 Identities=12% Similarity=-0.047 Sum_probs=139.5
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy597 329 ENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYE 408 (546)
Q Consensus 329 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~ 408 (546)
.+-....+..+..+.++....++..|...+.+..-.+.+. .+......++..++.++..-+..-.+..+.-.++....
T Consensus 267 ~d~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k~--~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~s 344 (482)
T KOG4322|consen 267 GDYQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDKG--CNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRS 344 (482)
T ss_pred chHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--hhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHH
Confidence 3444456777889999999999999999999987665332 22344566777888888888888888888877777665
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCccc--C-----CChhhHH-HHhhchhhHHHHHH
Q psy597 409 LKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACD--G-----DNKPIWQ-DRQKNKAKNREKYY 480 (546)
Q Consensus 409 ~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~--~-----~~~~~~~-~~~~~~~~~A~~~~ 480 (546)
.. ..+...+.+-.+++......|..+.|+..+..++....-++..... . ....+.. .....+.+.+..++
T Consensus 345 ey--~ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~drara~fvfanC~lA~a~s~~~e~ld~~~~~L 422 (482)
T KOG4322|consen 345 EY--SLDYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRARAIFVFANCTLAFALSCANESLDGFPRYL 422 (482)
T ss_pred Hh--ccchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcceeEEEEEeeeecchhhhhhhhHHhhHHHH
Confidence 54 2344456667788999999999999999999998865543321111 0 1111111 22556677788889
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHHhh
Q psy597 481 QRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKE---AEILYKQVLTRAH 530 (546)
Q Consensus 481 ~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~---A~~~~~~al~~~~ 530 (546)
++|-.++.+.. .+....++.+.++..|-..|+.++ +...|++++.-.|
T Consensus 423 ~~A~~~f~kL~--~he~ildv~yf~A~~yn~lGd~~eRn~~AslFrk~~~~le 473 (482)
T KOG4322|consen 423 DLAQSIFYKLG--CHEKILDVTYFSAYQYNHLGDSPERNLLASLFRKAWRYLE 473 (482)
T ss_pred HHHHHHHHHcc--chHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcC
Confidence 99998888773 366688899999999999998654 6667777776554
No 284
>KOG2041|consensus
Probab=96.13 E-value=0.48 Score=49.47 Aligned_cols=86 Identities=12% Similarity=0.104 Sum_probs=49.4
Q ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 330 NHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYEL 409 (546)
Q Consensus 330 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~ 409 (546)
++.....++.++|..+..+-.|++|.++|.+.-.. -++..+++...+|++-+.+.+
T Consensus 791 dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~----------------e~~~ecly~le~f~~LE~la~-------- 846 (1189)
T KOG2041|consen 791 DDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT----------------ENQIECLYRLELFGELEVLAR-------- 846 (1189)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch----------------HhHHHHHHHHHhhhhHHHHHH--------
Confidence 34556677778888888887888887777665332 133444444444444222211
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy597 410 KLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYK 443 (546)
Q Consensus 410 ~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~ 443 (546)
. -|.....+-.+|..+...|--++|.+.|-
T Consensus 847 ~----Lpe~s~llp~~a~mf~svGMC~qAV~a~L 876 (1189)
T KOG2041|consen 847 T----LPEDSELLPVMADMFTSVGMCDQAVEAYL 876 (1189)
T ss_pred h----cCcccchHHHHHHHHHhhchHHHHHHHHH
Confidence 1 12223344456777777777777776654
No 285
>KOG3783|consensus
Probab=96.09 E-value=2 Score=43.95 Aligned_cols=188 Identities=19% Similarity=0.102 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHH--------HHcCCHHHHHHHHHHHH
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLA-VLY--------GKRGKYKEAEPLCKRAL 362 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la-~~~--------~~~g~~~~A~~~~~~al 362 (546)
..-+++.+|+++..+.+|..|..++....+.. .+.-..|..++ .++ ...|+-+.|-.+++...
T Consensus 302 ~~l~~fE~aw~~v~~~~~~~aad~~~~L~des--------dWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~ 373 (546)
T KOG3783|consen 302 KSLMVFERAWLSVGQHQYSRAADSFDLLRDES--------DWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGE 373 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhh--------hhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHH
Confidence 45567889999999999999999998887763 22222233333 222 22456666666666655
Q ss_pred HHHHHhcCCCChHHHH----------------------HHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhcCCCChHH
Q psy597 363 EIREKVLGKEHPDVAK----------------------QLNNLALLCQN--QSKYEEVERYYQRALEIYELKLGPDDSNV 418 (546)
Q Consensus 363 ~~~~~~~~~~~~~~~~----------------------~~~~la~~~~~--~g~~~eA~~~~~~al~~~~~~~~~~~~~~ 418 (546)
.+.... |++.|.... .++.++.++.. ....++.. ++..-++..--.|....
T Consensus 374 ~l~~~a-~K~~P~E~f~~RKverf~~~~~~~~~~~la~P~~El~Y~Wngf~~~s~~~l~----k~~~~~~~~~~~d~Dd~ 448 (546)
T KOG3783|consen 374 ELLANA-GKNLPLEKFIVRKVERFVKRGPLNASILLASPYYELAYFWNGFSRMSKNELE----KMRAELENPKIDDSDDE 448 (546)
T ss_pred HHHHhc-cccCchhHHHHHHHHHHhccccccccccccchHHHHHHHHhhcccCChhhHH----HHHHHHhccCCCCchHH
Confidence 554331 122221111 11222222211 11112222 22111111111133344
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHH
Q psy597 419 AKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNV 498 (546)
Q Consensus 419 ~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~ 498 (546)
.--+..+|.++..+|+...|..+|..+++.... ...+....
T Consensus 449 ~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~---------------------------------------~~~d~w~~ 489 (546)
T KOG3783|consen 449 GLKYLLKGVILRNLGDSEVAPKCFKIQVEKESK---------------------------------------RTEDLWAV 489 (546)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---------------------------------------hccccccc
Confidence 555667788888888888888888877753111 11234456
Q ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHhhh
Q psy597 499 AKTKNNLASCYLKQGK-YKEAEILYKQVLTRAHE 531 (546)
Q Consensus 499 ~~~~~~La~~y~~~g~-~~~A~~~~~~al~~~~~ 531 (546)
+.+++.+|.+|..+|. ..+|..++.+|-.-..+
T Consensus 490 PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~d 523 (546)
T KOG3783|consen 490 PFALYELALLYWDLGGGLKEARALLLKAREYASD 523 (546)
T ss_pred cHHHHHHHHHHHhcccChHHHHHHHHHHHhhccc
Confidence 7789999999999988 99999999998876544
No 286
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=95.90 E-value=1.5 Score=40.88 Aligned_cols=58 Identities=24% Similarity=0.208 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhhh
Q psy597 393 YEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK-QGKYKEAEILYKQVLTRAH 450 (546)
Q Consensus 393 ~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~-~g~~~eA~~~~~~al~~~~ 450 (546)
.+.|...|++|+++....++|.+|.......|.+..|+. .|+.++|+...++++..+.
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~ 200 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAI 200 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 478999999999999998889999988888888888755 8999999999999988654
No 287
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.86 E-value=1.4 Score=41.28 Aligned_cols=146 Identities=16% Similarity=0.101 Sum_probs=97.9
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHH
Q psy597 297 NILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDV 376 (546)
Q Consensus 297 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 376 (546)
+..+.......+.++-++-+++.++-.+.. +.....+.++.++|..|...++.+.+.+++.+.++..-.. +-.-+.
T Consensus 79 fD~~~~n~l~kkneeki~Elde~i~~~eed--ngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~st--g~KiDv 154 (412)
T COG5187 79 FDRGRMNTLLKKNEEKIEELDERIREKEED--NGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMST--GLKIDV 154 (412)
T ss_pred hhhHHHHHHHHhhHHHHHHHHHHHHHHhhc--ccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhc--ccchhh
Confidence 334444444455566777777777665554 2245668899999999999999999999999988765433 333456
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 377 AKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 377 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
..+-..+|.+|..+.-.++.++.....++. |+|....-......|.......+|.+|-.++-.++..+..
T Consensus 155 ~l~kiRlg~~y~d~~vV~e~lE~~~~~iEk-----GgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S 224 (412)
T COG5187 155 FLCKIRLGLIYGDRKVVEESLEVADDIIEK-----GGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFES 224 (412)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHh-----CCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhccccc
Confidence 667778888886665555555555544443 2333333334445677777888999999998888765544
No 288
>KOG4814|consensus
Probab=95.81 E-value=2.3 Score=44.28 Aligned_cols=103 Identities=15% Similarity=0.148 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHH
Q psy597 217 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATML 296 (546)
Q Consensus 217 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 296 (546)
.+.+-|.-.++..+|..++++|...+..++... .+...+...
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~--------------------------------------~~~~FaK~q 397 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDN--------------------------------------YSDRFAKIQ 397 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchh--------------------------------------hhhHHHHHH
Confidence 344555666777778888888877776544322 345568888
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy597 297 NILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 365 (546)
Q Consensus 297 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 365 (546)
..++.+|....+.+.|.+++++|-+.. |...-.-..+..+....|.-++|+.+..+.....
T Consensus 398 R~l~~CYL~L~QLD~A~E~~~EAE~~d--------~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 398 RALQVCYLKLEQLDNAVEVYQEAEEVD--------RQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhhc--------cccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhh
Confidence 999999999999999999999998773 3334455566677778899999999998887665
No 289
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.74 E-value=0.019 Score=34.70 Aligned_cols=32 Identities=31% Similarity=0.604 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 420 KTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 420 ~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
.+++.+|.+|...|++++|+..|++++...|+
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 36789999999999999999999999988664
No 290
>KOG0376|consensus
Probab=95.73 E-value=0.0088 Score=59.49 Aligned_cols=99 Identities=22% Similarity=0.218 Sum_probs=89.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChH
Q psy597 338 LNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSN 417 (546)
Q Consensus 338 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~ 417 (546)
+-+-+.-.+.-+.|+.|+..|.+|+++ +|..+..+.+.+..+...+++..|+.-+.+|++. +|.
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~l--------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~--------dP~ 70 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIEL--------DPNCAIYFANRALAHLKVESFGGALHDALKAIEL--------DPT 70 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhc--------CCcceeeechhhhhheeechhhhHHHHHHhhhhc--------Cch
Confidence 334566777889999999999999999 5888889999999999999999999999999998 899
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhc
Q psy597 418 VAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 452 (546)
Q Consensus 418 ~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~ 452 (546)
...+|+.-|.+....+++.+|...|+......|.+
T Consensus 71 ~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd 105 (476)
T KOG0376|consen 71 YIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPND 105 (476)
T ss_pred hhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCc
Confidence 99999999999999999999999999998877654
No 291
>KOG0376|consensus
Probab=95.71 E-value=0.013 Score=58.40 Aligned_cols=108 Identities=14% Similarity=0.140 Sum_probs=93.1
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHH
Q psy597 298 ILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVA 377 (546)
Q Consensus 298 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 377 (546)
.-+.-.+.-+.|+.|+..|.+|+++ +|..+..+.+.+..+.+.++|..|+.-+.++++. +|...
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~l--------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~--------dP~~~ 72 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIEL--------DPNCAIYFANRALAHLKVESFGGALHDALKAIEL--------DPTYI 72 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhc--------CCcceeeechhhhhheeechhhhHHHHHHhhhhc--------Cchhh
Confidence 4456677788999999999999998 5666778889999999999999999999999998 49999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q psy597 378 KQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCY 429 (546)
Q Consensus 378 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y 429 (546)
.+|...|.++...+.+.+|...|+....+ .|+...+...+..|-
T Consensus 73 K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l--------~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 73 KAYVRRGTAVMALGEFKKALLDLEKVKKL--------APNDPDATRKIDECN 116 (476)
T ss_pred heeeeccHHHHhHHHHHHHHHHHHHhhhc--------CcCcHHHHHHHHHHH
Confidence 99999999999999999999999999887 666666665555553
No 292
>KOG4814|consensus
Probab=95.54 E-value=2.2 Score=44.35 Aligned_cols=106 Identities=19% Similarity=0.118 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q psy597 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPD 414 (546)
Q Consensus 335 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~ 414 (546)
-..+++-|.-.++..+|..++++|...+.....- ..+...+....+++.||..+.+.|.|.+++++|-+.
T Consensus 354 H~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D--~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~-------- 423 (872)
T KOG4814|consen 354 HTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISD--NYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEV-------- 423 (872)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccch--hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh--------
Confidence 3455666666777777777777777776654211 112334566677777777777777777777777666
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q psy597 415 DSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAH 450 (546)
Q Consensus 415 ~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~ 450 (546)
+|..+.+...+-.+....|+-++|+...........
T Consensus 424 d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~~ 459 (872)
T KOG4814|consen 424 DRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSED 459 (872)
T ss_pred ccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhc
Confidence 555555666666666667777777777666655443
No 293
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.51 E-value=2.2 Score=40.37 Aligned_cols=164 Identities=17% Similarity=0.124 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHH
Q psy597 214 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVA 293 (546)
Q Consensus 214 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 293 (546)
....-+..+......|++.+|.+.|..++.. .+...
T Consensus 133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~--------------------------------------------~~~~~ 168 (304)
T COG3118 133 EEEEALAEAKELIEAEDFGEAAPLLKQALQA--------------------------------------------APENS 168 (304)
T ss_pred HHHHHHHHhhhhhhccchhhHHHHHHHHHHh--------------------------------------------Ccccc
Confidence 4445566777888999999999999999984 34446
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q psy597 294 TMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEH 373 (546)
Q Consensus 294 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 373 (546)
.+...++.+|...|+.+.|...+...-.-... .. ...+...-..+.......+....-.+. .. +
T Consensus 169 ~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~-----~~--~~~l~a~i~ll~qaa~~~~~~~l~~~~-aa--------d 232 (304)
T COG3118 169 EAKLLLAECLLAAGDVEAAQAILAALPLQAQD-----KA--AHGLQAQIELLEQAAATPEIQDLQRRL-AA--------D 232 (304)
T ss_pred hHHHHHHHHHHHcCChHHHHHHHHhCcccchh-----hH--HHHHHHHHHHHHHHhcCCCHHHHHHHH-Hh--------C
Confidence 77888999999999999998887764222111 00 111111112222222222222222221 11 4
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy597 374 PDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYK 443 (546)
Q Consensus 374 ~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~ 443 (546)
|+...+-+.+|..+...|++++|.+.+-..+.. .. ......+...+-.++...|.-+.+...|+
T Consensus 233 Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~---d~---~~~d~~~Rk~lle~f~~~g~~Dp~~~~~R 296 (304)
T COG3118 233 PDDVEAALALADQLHLVGRNEAALEHLLALLRR---DR---GFEDGEARKTLLELFEAFGPADPLVLAYR 296 (304)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---cc---cccCcHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 777888899999999999999999888666554 11 22223344455556666664444444443
No 294
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.48 E-value=0.34 Score=41.71 Aligned_cols=149 Identities=11% Similarity=0.107 Sum_probs=86.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Q psy597 343 VLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTK 422 (546)
Q Consensus 343 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~ 422 (546)
.-|+..+.-..+-..|..++++. ..++.++|+..|...-+. +....-..+.
T Consensus 47 y~yw~~s~as~sgd~flaAL~lA-----------------------~~~k~d~Alaaf~~lekt------g~g~YpvLA~ 97 (221)
T COG4649 47 YTYWQTSRASKSGDAFLAALKLA-----------------------QENKTDDALAAFTDLEKT------GYGSYPVLAR 97 (221)
T ss_pred eehhcccccccchHHHHHHHHHH-----------------------HcCCchHHHHHHHHHHhc------CCCcchHHHH
Confidence 34555555555555555555543 345566666666544332 1112223345
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Q psy597 423 NNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTK 502 (546)
Q Consensus 423 ~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~ 502 (546)
...|.+....|+...|+..|.++-.-.+.+..+........++.+...|.+ .......+.+.++.+|....+.
T Consensus 98 mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy-------~dV~srvepLa~d~n~mR~sAr 170 (221)
T COG4649 98 MRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY-------DDVSSRVEPLAGDGNPMRHSAR 170 (221)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH-------HHHHHHhhhccCCCChhHHHHH
Confidence 566777777777777777777765533222111111112223333333333 3333334444556678888899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 503 NNLASCYLKQGKYKEAEILYKQVLT 527 (546)
Q Consensus 503 ~~La~~y~~~g~~~~A~~~~~~al~ 527 (546)
..||..-++.|++.+|..+|.....
T Consensus 171 EALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 171 EALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHhHHHHhccchHHHHHHHHHHHc
Confidence 9999999999999999999998765
No 295
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.19 E-value=0.27 Score=39.08 Aligned_cols=95 Identities=19% Similarity=0.082 Sum_probs=64.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc----CCHH-------HHHHHHHHHHHHHHH
Q psy597 341 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQ----SKYE-------EVERYYQRALEIYEL 409 (546)
Q Consensus 341 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~-------eA~~~~~~al~~~~~ 409 (546)
+|.-++..|++-+|+++.+..+... +++......+..-|.++..+ .+.+ .|+++|.++..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h-----~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~L--- 73 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRH-----GEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVEL--- 73 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHc-----cCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhcc---
Confidence 4667889999999999999998875 22233335566667777543 3444 345555555555
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 410 KLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 410 ~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
.|..+..++.+|.-+-....|+++..-.++++.+
T Consensus 74 -----sp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 74 -----SPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred -----ChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 6777888888887766666677777777776654
No 296
>KOG2041|consensus
Probab=95.16 E-value=5.2 Score=42.25 Aligned_cols=35 Identities=11% Similarity=0.160 Sum_probs=29.4
Q ss_pred CCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q psy597 287 HDHPDVATMLNILALVYRDQNKYKEAANLLNDALT 321 (546)
Q Consensus 287 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 321 (546)
.++.....++..+|..+..+..+++|.++|...-.
T Consensus 790 ~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~ 824 (1189)
T KOG2041|consen 790 DDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD 824 (1189)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 35566778999999999999999999999987643
No 297
>KOG1258|consensus
Probab=95.15 E-value=2.5 Score=43.76 Aligned_cols=194 Identities=11% Similarity=-0.029 Sum_probs=129.2
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
..+.....|......-...|++....-.|++++--+ ......|...+......|+.+-|...+.++.++.
T Consensus 292 l~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c--------A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~-- 361 (577)
T KOG1258|consen 292 LDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC--------ALYDEFWIKYARWMESSGDVSLANNVLARACKIH-- 361 (577)
T ss_pred ccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH--------hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhc--
Confidence 344555667777777778899999999999998765 2336778888888888899999999999998886
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 368 VLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 447 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~ 447 (546)
.+....+...-+.+....|+++.|...+++...- .|....+-..-+....++|+.+.+.. +.....
T Consensus 362 -----~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e--------~pg~v~~~l~~~~~e~r~~~~~~~~~-~~~l~s 427 (577)
T KOG1258|consen 362 -----VKKTPIIHLLEARFEESNGNFDDAKVILQRIESE--------YPGLVEVVLRKINWERRKGNLEDANY-KNELYS 427 (577)
T ss_pred -----CCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh--------CCchhhhHHHHHhHHHHhcchhhhhH-HHHHHH
Confidence 4556666677788888899999999999998876 46666666666667778888888874 222222
Q ss_pred hhhhcccCc---ccCCChhhHH-HHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcC
Q psy597 448 RAHEREFGA---CDGDNKPIWQ-DRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQG 513 (546)
Q Consensus 448 ~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g 513 (546)
...+..... ........+. +.-.++.+.|...+.++.++ .|.....+..+..+....+
T Consensus 428 ~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~--------~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 428 SIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDI--------LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc--------CCccHHHHHHHHHHHHhCC
Confidence 211111000 0001111111 44567777888888887766 4444444444444444433
No 298
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=95.13 E-value=0.4 Score=35.41 Aligned_cols=69 Identities=20% Similarity=0.151 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy597 337 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELK 410 (546)
Q Consensus 337 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~ 410 (546)
-...-|.-++...+.++|+..++++++.. .+.++...++..+..+|...|+|.+++.+.-+=+++.+..
T Consensus 8 ~~ie~GlkLY~~~~~~~Al~~W~~aL~k~-----~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~el 76 (80)
T PF10579_consen 8 QQIEKGLKLYHQNETQQALQKWRKALEKI-----TDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEEL 76 (80)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhhc-----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34445556668889999999999999886 4557888889999999999999999999999888887665
No 299
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.05 E-value=3.2 Score=41.38 Aligned_cols=155 Identities=20% Similarity=0.206 Sum_probs=110.7
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCC---------------------CCHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGE---------------------NHAAVAATLNNLAVLYG 346 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~---------------------~~~~~~~~~~~la~~~~ 346 (546)
.+|....++..++.++..+|++..|.+++++|+-.++..+.+ .+.....+++.......
T Consensus 35 ~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~ 114 (360)
T PF04910_consen 35 KNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLG 114 (360)
T ss_pred HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHH
Confidence 578889999999999999999999999999999887643211 12234456777788899
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q psy597 347 KRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLA 426 (546)
Q Consensus 347 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La 426 (546)
+.|-+..|.++++-.+.+. +. .+-..++..+=....+.++|+--+..++.......+. .....+..-+..+
T Consensus 115 ~RG~~rTAlE~~KlLlsLd-----p~-~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~---~~~~lPn~a~S~a 185 (360)
T PF04910_consen 115 RRGCWRTALEWCKLLLSLD-----PD-EDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRN---WLSLLPNFAFSIA 185 (360)
T ss_pred hcCcHHHHHHHHHHHHhcC-----CC-CCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhh---hhhhCccHHHHHH
Confidence 9999999999999999884 22 1233444555556667788887777777655421000 0001223456678
Q ss_pred HHHHHcCCH---------------HHHHHHHHHHHHhhhh
Q psy597 427 SCYLKQGKY---------------KEAEILYKQVLTRAHE 451 (546)
Q Consensus 427 ~~y~~~g~~---------------~eA~~~~~~al~~~~~ 451 (546)
.+++..++. ++|...+.+|+...|.
T Consensus 186 LA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 186 LAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred HHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 888888887 8999999999987664
No 300
>KOG1550|consensus
Probab=94.91 E-value=3 Score=44.40 Aligned_cols=196 Identities=17% Similarity=0.106 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHHhh---cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHH
Q psy597 293 ATMLNILALVYRDQN---KYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGK----RGKYKEAEPLCKRALEIR 365 (546)
Q Consensus 293 ~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~ 365 (546)
+.+.+.+|.+|.... ++..|..+|..|... + ...+.+.+|.+|.. .-+...|..++.++.+..
T Consensus 325 ~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~------G----~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 325 PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA------G----HILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred chHHHHHHHHHHcCCccccHHHHHHHHHHHHHc------C----ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 456778888887755 578999999998764 2 25577788887764 357899999999998872
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc----CCHHHHHH
Q psy597 366 EKVLGKEHPDVAKQLNNLALLCQNQ-SKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ----GKYKEAEI 440 (546)
Q Consensus 366 ~~~~~~~~~~~~~~~~~la~~~~~~-g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~----g~~~eA~~ 440 (546)
+ +.+...++.++..- +.++.+...+....+.--.. ....+..+.......... .+...+..
T Consensus 395 -------~---~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~----~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 460 (552)
T KOG1550|consen 395 -------N---PSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEV----AQSNAAYLLDQSEEDLFSRGVISTLERAFS 460 (552)
T ss_pred -------C---hhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhH----HhhHHHHHHHhccccccccccccchhHHHH
Confidence 2 22233344333322 77777777666555542111 111111111111112111 24556666
Q ss_pred HHHHHHHhhhhcccCcccCCChhhHHHH----hhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHc-C--
Q psy597 441 LYKQVLTRAHEREFGACDGDNKPIWQDR----QKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ-G-- 513 (546)
Q Consensus 441 ~~~~al~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~-g-- 513 (546)
.+.++...... .....++..+. -..++..|...|..|... . +...+++|.++..- |
T Consensus 461 ~~~~a~~~g~~------~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~---------~--~~~~~nlg~~~e~g~g~~ 523 (552)
T KOG1550|consen 461 LYSRAAAQGNA------DAILKLGDYYYYGLGTGRDPEKAAAQYARASEQ---------G--AQALFNLGYMHEHGEGIK 523 (552)
T ss_pred HHHHHHhccCH------HHHhhhcceeeecCCCCCChHHHHHHHHHHHHh---------h--hHHHhhhhhHHhcCcCcc
Confidence 66655543221 11112222211 123456666666666533 2 77888999988652 1
Q ss_pred CHHHHHHHHHHHHHHh
Q psy597 514 KYKEAEILYKQVLTRA 529 (546)
Q Consensus 514 ~~~~A~~~~~~al~~~ 529 (546)
....|..+|.++....
T Consensus 524 ~~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 524 VLHLAKRYYDQASEED 539 (552)
T ss_pred hhHHHHHHHHHHHhcC
Confidence 2688999998887754
No 301
>KOG1308|consensus
Probab=94.89 E-value=0.0086 Score=56.85 Aligned_cols=88 Identities=20% Similarity=0.140 Sum_probs=81.0
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Q psy597 345 YGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNN 424 (546)
Q Consensus 345 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~ 424 (546)
.+..|.++.|++.|..++.+ +|..+..+...+.++..+++...|++-|..|+.+ +++.+.-|-.
T Consensus 124 Aln~G~~~~ai~~~t~ai~l--------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--------n~Dsa~~ykf 187 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIEL--------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--------NPDSAKGYKF 187 (377)
T ss_pred HhcCcchhhhhccccccccc--------CCchhhhcccccceeeeccCCchhhhhhhhhhcc--------Ccccccccch
Confidence 34567899999999999998 5889999999999999999999999999999999 8888888888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 425 LASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 425 La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
.+.....+|++++|...+..+.++
T Consensus 188 rg~A~rllg~~e~aa~dl~~a~kl 211 (377)
T KOG1308|consen 188 RGYAERLLGNWEEAAHDLALACKL 211 (377)
T ss_pred hhHHHHHhhchHHHHHHHHHHHhc
Confidence 999999999999999999999886
No 302
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=94.77 E-value=0.55 Score=34.72 Aligned_cols=70 Identities=23% Similarity=0.178 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy597 294 TMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 368 (546)
Q Consensus 294 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 368 (546)
.-...-|.-++...+..+|+..+.++++.. .+.+....++..+..+|...|+|.+.+.+..+-+++.+..
T Consensus 7 k~~ie~GlkLY~~~~~~~Al~~W~~aL~k~-----~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~el 76 (80)
T PF10579_consen 7 KQQIEKGLKLYHQNETQQALQKWRKALEKI-----TDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEEL 76 (80)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhhc-----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 334455666778899999999999999876 5567778889999999999999999999999988887665
No 303
>KOG1308|consensus
Probab=94.75 E-value=0.023 Score=54.07 Aligned_cols=126 Identities=16% Similarity=0.153 Sum_probs=94.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCCh
Q psy597 383 LALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNK 462 (546)
Q Consensus 383 la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~ 462 (546)
-+.-.+..|.++.|+..|..++.+ +|..+..+...+.+++++++...|+.-+..++.+.++.. ..+-.
T Consensus 120 ~A~eAln~G~~~~ai~~~t~ai~l--------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa----~~ykf 187 (377)
T KOG1308|consen 120 QASEALNDGEFDTAIELFTSAIEL--------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSA----KGYKF 187 (377)
T ss_pred HHHHHhcCcchhhhhccccccccc--------CCchhhhcccccceeeeccCCchhhhhhhhhhccCcccc----cccch
Confidence 344455688999999999999998 899999999999999999999999999999998865432 44556
Q ss_pred hhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q psy597 463 PIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRA 529 (546)
Q Consensus 463 ~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~ 529 (546)
.+.+.+.+|++.+|...+..|.++ ..++... ..+-.+.-..+..++-...++++.+-.
T Consensus 188 rg~A~rllg~~e~aa~dl~~a~kl------d~dE~~~---a~lKeV~p~a~ki~e~~~k~er~~~e~ 245 (377)
T KOG1308|consen 188 RGYAERLLGNWEEAAHDLALACKL------DYDEANS---ATLKEVFPNAGKIEEHRRKYERAREER 245 (377)
T ss_pred hhHHHHHhhchHHHHHHHHHHHhc------cccHHHH---HHHHHhccchhhhhhchhHHHHHHHHh
Confidence 677888899999999999998876 2222222 234455555555555555555555443
No 304
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=94.71 E-value=0.78 Score=43.20 Aligned_cols=73 Identities=15% Similarity=0.083 Sum_probs=61.7
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRAL 362 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 362 (546)
.......+...+|..|+..|+|++|..+|+.+...+++. +-......++..+..|+...|+.+..+.+.-+.+
T Consensus 173 ~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~e--gW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 173 QNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRRE--GWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred cchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC--CcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 345566777899999999999999999999998888776 5666778889999999999999999888776554
No 305
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=94.63 E-value=2.3 Score=39.61 Aligned_cols=59 Identities=24% Similarity=0.216 Sum_probs=50.0
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHhhh
Q psy597 473 AKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK-QGKYKEAEILYKQVLTRAHE 531 (546)
Q Consensus 473 ~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~-~g~~~~A~~~~~~al~~~~~ 531 (546)
...|...|++|+.+....+++.+|.......+.+..|+. .|+.++|+...++|+..+-.
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~ 201 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAIS 201 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 467889999999999998899999998888888887755 89999999999999887644
No 306
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=94.61 E-value=3.6 Score=40.43 Aligned_cols=112 Identities=10% Similarity=-0.009 Sum_probs=73.6
Q ss_pred hhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q psy597 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 369 (546)
Q Consensus 290 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 369 (546)
|.....+..+-.......+.++...-+++++... ++.+..-..|...-......-.+......|.+++.......
T Consensus 62 p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-----~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~ 136 (321)
T PF08424_consen 62 PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-----PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRR 136 (321)
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhh
Confidence 3333344433444445556667677777777663 33444444444444444455678899999999988776553
Q ss_pred CCC----------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 370 GKE----------HPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406 (546)
Q Consensus 370 ~~~----------~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 406 (546)
... ......++..++......|..+.|+..++-.+++
T Consensus 137 ~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 137 SGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEF 183 (321)
T ss_pred ccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHH
Confidence 332 2234567778888889999999999999999987
No 307
>KOG1538|consensus
Probab=94.60 E-value=2 Score=44.72 Aligned_cols=125 Identities=18% Similarity=0.182 Sum_probs=76.8
Q ss_pred HHHHHHHHhhcHHHHHHHHHHH------HHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 298 ILALVYRDQNKYKEAANLLNDA------LTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 371 (546)
Q Consensus 298 ~la~~~~~~g~~~~A~~~~~~a------l~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 371 (546)
.+|.++...|+|.+|.+.|.+. ++++.. .-.+.++.-+...|..++-..+.++--+.+... +
T Consensus 637 LlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTD----------lRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~--k 704 (1081)
T KOG1538|consen 637 LLADVFAYQGKFHEAAKLFKRSGHENRALEMYTD----------LRMFDYAQEFLGSGDPKEKKMLIRKRADWARNI--K 704 (1081)
T ss_pred HHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHH----------HHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhc--C
Confidence 4678888899999999998763 333311 124566777777777777666666655544333 1
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHH------HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy597 372 EHPDVAKQLNNLALLCQNQSKYEEVERYY------QRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQV 445 (546)
Q Consensus 372 ~~~~~~~~~~~la~~~~~~g~~~eA~~~~------~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~a 445 (546)
.|. .-|..+...|+.++|+... +-++++.++. +......+..++..+.+...+.-|-+.|.+.
T Consensus 705 -ePk------aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkl----d~~ere~l~~~a~ylk~l~~~gLAaeIF~k~ 773 (1081)
T KOG1538|consen 705 -EPK------AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKL----DKAEREPLLLCATYLKKLDSPGLAAEIFLKM 773 (1081)
T ss_pred -CcH------HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhc----chhhhhHHHHHHHHHhhccccchHHHHHHHh
Confidence 122 2355667778888887653 4566666555 4444555555666566666666666666554
No 308
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.58 E-value=0.46 Score=40.72 Aligned_cols=90 Identities=17% Similarity=0.159 Sum_probs=75.7
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy597 331 HAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELK 410 (546)
Q Consensus 331 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~ 410 (546)
+......+..+..+-...++.+++..++.-.--+. |.....-..-|.++...|++.+|+..++...+-
T Consensus 6 ~~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLR--------P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~---- 73 (160)
T PF09613_consen 6 SDEIVGGLIEVLSVALRLGDPDDAEALLDALRVLR--------PEFPELDLFDGWLHIVRGDWDDALRLLRELEER---- 73 (160)
T ss_pred cHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhC--------CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc----
Confidence 45567778888888889999999999998777664 888888889999999999999999999997654
Q ss_pred cCCCChHHHHHHHHHHHHHHHcCCHH
Q psy597 411 LGPDDSNVAKTKNNLASCYLKQGKYK 436 (546)
Q Consensus 411 ~~~~~~~~~~~~~~La~~y~~~g~~~ 436 (546)
.+..+.+.-.++.|+..+|+..
T Consensus 74 ----~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 74 ----APGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred ----CCCChHHHHHHHHHHHHcCChH
Confidence 6777777888999999888864
No 309
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=94.52 E-value=5.9 Score=40.53 Aligned_cols=181 Identities=19% Similarity=0.050 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHH
Q psy597 217 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATML 296 (546)
Q Consensus 217 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 296 (546)
....+|..++-.|+|+-|...|+.+.+.+.... .....+.+.
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dk--------------------------------------aw~~~A~~~ 251 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKNDK--------------------------------------AWKYLAGAQ 251 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhch--------------------------------------hHHHHHhHH
Confidence 456799999999999999999998888654322 122334444
Q ss_pred HHHHHHHHHhhcH-------HHHHHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy597 297 NILALVYRDQNKY-------KEAANLLNDALTIREKTLG---ENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE 366 (546)
Q Consensus 297 ~~la~~~~~~g~~-------~~A~~~~~~al~~~~~~~g---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 366 (546)
-..|.+....+.. +....+++.|+..+.+... ........+....+.++...|.+.+|...+-+.....-
T Consensus 252 Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l 331 (414)
T PF12739_consen 252 EMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEIL 331 (414)
T ss_pred HHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence 4555555555432 3666777777777766211 12234566777888889999999888887777765521
Q ss_pred HhcCCCChH---HHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHH
Q psy597 367 KVLGKEHPD---VAKQLNNLALLC--QNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEIL 441 (546)
Q Consensus 367 ~~~~~~~~~---~~~~~~~la~~~--~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~ 441 (546)
. . ... .+..+-.+|.+| ...........- ....+.-+..-|.-|.+.|+...|..+
T Consensus 332 ~---~-~l~~~~~alllE~~a~~~~~~~~~~~~~~~~r---------------~RK~af~~vLAg~~~~~~~~~~~a~rc 392 (414)
T PF12739_consen 332 E---S-DLRPFGSALLLEQAAYCYASLRSNRPSPGLTR---------------FRKYAFHMVLAGHRYSKAGQKKHALRC 392 (414)
T ss_pred h---h-hhhhHhhHHHHHHHHHhhcccccCCCCccchh---------------hHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 0 0 112 444555556555 111000000000 112333344456789999999999999
Q ss_pred HHHHHHhhhhccc
Q psy597 442 YKQVLTRAHEREF 454 (546)
Q Consensus 442 ~~~al~~~~~~~~ 454 (546)
|..++..+....+
T Consensus 393 y~~a~~vY~~~~W 405 (414)
T PF12739_consen 393 YKQALQVYEGKGW 405 (414)
T ss_pred HHHHHHHhCCCCC
Confidence 9999998765443
No 310
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=94.47 E-value=0.85 Score=36.32 Aligned_cols=95 Identities=16% Similarity=0.191 Sum_probs=61.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHHHHHH
Q psy597 221 LVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILA 300 (546)
Q Consensus 221 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~la 300 (546)
.+..++..|++-+|+++.+..+..... ....+..+..-|
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~-----------------------------------------~~~~~~lh~~QG 40 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGE-----------------------------------------DESSWLLHRLQG 40 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccC-----------------------------------------CCchHHHHHHHh
Confidence 467789999999999999988874322 222224455555
Q ss_pred HHHHHhh----cH-------HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 301 LVYRDQN----KY-------KEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 364 (546)
Q Consensus 301 ~~~~~~g----~~-------~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 364 (546)
.++.... +. -.|++.|.++..+ .|..+..++.+|.-+.....|+++..-.++++.+
T Consensus 41 ~if~~lA~~ten~d~k~~yLl~sve~~s~a~~L--------sp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 41 TIFYKLAKKTENPDVKFRYLLGSVECFSRAVEL--------SPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHHHhccCchHHHHHHHHhHHHHHHHhcc--------ChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 5554432 22 3445555555554 4555777888887776666777777777777655
No 311
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.38 E-value=3.1 Score=36.06 Aligned_cols=99 Identities=11% Similarity=0.146 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 294 TMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVA--ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 371 (546)
Q Consensus 294 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 371 (546)
-+....|.+....|+...|+.+|.++-.. ...|... .+...-+.++...|-|+.-.. ..+.+.++
T Consensus 95 LA~mr~at~~a~kgdta~AV~aFdeia~d------t~~P~~~rd~ARlraa~lLvD~gsy~dV~s-------rvepLa~d 161 (221)
T COG4649 95 LARMRAATLLAQKGDTAAAVAAFDEIAAD------TSIPQIGRDLARLRAAYLLVDNGSYDDVSS-------RVEPLAGD 161 (221)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHhcc------CCCcchhhHHHHHHHHHHHhccccHHHHHH-------HhhhccCC
Confidence 34677899999999999999999987654 2233333 234455677788888876544 33444556
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 372 EHPDVAKQLNNLALLCQNQSKYEEVERYYQRALE 405 (546)
Q Consensus 372 ~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 405 (546)
.+|....+.-.||..-++.|++..|...|.....
T Consensus 162 ~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 162 GNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred CChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 6788888999999999999999999999998766
No 312
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=94.33 E-value=2.3 Score=42.42 Aligned_cols=173 Identities=14% Similarity=0.033 Sum_probs=113.7
Q ss_pred CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchh-HHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCC
Q psy597 209 YEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYE-AAETLEDCALRSRKESYDIVKQAKVAQILGSGGH 287 (546)
Q Consensus 209 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 287 (546)
..+|-.+.++..++.++..+|++..|.+++++|+-.+.......- ....-...+.. .+.-...
T Consensus 34 ~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~----------------rL~~~~~ 97 (360)
T PF04910_consen 34 QKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNC----------------RLDYRRP 97 (360)
T ss_pred HHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCcc----------------ccCCccc
Confidence 456888999999999999999999999999999987664431100 00000000000 0000012
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
.+...-.+++.......+.|-+..|.++.+-.+.+.+. ++| ..++..+-....+.++|+--+.+++.......+
T Consensus 98 eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~----~DP--~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~ 171 (360)
T PF04910_consen 98 ENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPD----EDP--LGVLLFIDYYALRSRQYQWLIDFSESPLAKCYR 171 (360)
T ss_pred cchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCC----CCc--chhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhh
Confidence 33445566777778888999999999999999988522 144 345566666777888888778877765552100
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcCCH---------------HHHHHHHHHHHHH
Q psy597 368 VLGKEHPDVAKQLNNLALLCQNQSKY---------------EEVERYYQRALEI 406 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~~~g~~---------------~eA~~~~~~al~~ 406 (546)
. -....+...+.++.+++..++- +.|...+.+|+..
T Consensus 172 ~---~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~ 222 (360)
T PF04910_consen 172 N---WLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILR 222 (360)
T ss_pred h---hhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHH
Confidence 0 0011234566778888888888 8999999999988
No 313
>KOG4322|consensus
Probab=94.31 E-value=3.6 Score=40.88 Aligned_cols=158 Identities=16% Similarity=0.058 Sum_probs=107.9
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
.......++..++.++...+.--.+..+.-.++..+.+. ..+...+.+-.+++....-.|..+.|...+..++....-
T Consensus 308 ~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~sey--~ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~ 385 (482)
T KOG4322|consen 308 NEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSEY--SLDYLEANENLDLALEHLALGSPKAALPLLHTAVHLILV 385 (482)
T ss_pred hHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHh--ccchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHh
Confidence 344556677777788777777777777777777666554 334444566678888899999999999999999877533
Q ss_pred hcCCCChH-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHH---HHH
Q psy597 368 VLGKEHPD-----VAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYK---EAE 439 (546)
Q Consensus 368 ~~~~~~~~-----~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~---eA~ 439 (546)
..|-+... .+.++..-+..+ ...+.+.+.+++++|-.++.+. +-+....++.+.++..|-..|+.+ ++.
T Consensus 386 ~GgL~drara~fvfanC~lA~a~s~-~~e~ld~~~~~L~~A~~~f~kL--~~he~ildv~yf~A~~yn~lGd~~eRn~~A 462 (482)
T KOG4322|consen 386 QGGLDDRARAIFVFANCTLAFALSC-ANESLDGFPRYLDLAQSIFYKL--GCHEKILDVTYFSAYQYNHLGDSPERNLLA 462 (482)
T ss_pred ccchhhcceeEEEEEeeeecchhhh-hhhhHHhhHHHHHHHHHHHHHc--cchHHHHHHHHHHHHHHHhhcCchHHHHHH
Confidence 22211110 011111112222 5667899999999999998887 446668889999999999999865 555
Q ss_pred HHHHHHHHhhh
Q psy597 440 ILYKQVLTRAH 450 (546)
Q Consensus 440 ~~~~~al~~~~ 450 (546)
..|++.+...+
T Consensus 463 slFrk~~~~le 473 (482)
T KOG4322|consen 463 SLFRKAWRYLE 473 (482)
T ss_pred HHHHHHHHhcC
Confidence 66777766543
No 314
>KOG0687|consensus
Probab=93.87 E-value=5.1 Score=38.39 Aligned_cols=133 Identities=18% Similarity=0.180 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q psy597 310 KEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQN 389 (546)
Q Consensus 310 ~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 389 (546)
++-++-+++.++-.++.+| ......++.+.|..|.+.|+-+.|.+.+.+..+..-.. +..-+.......+|..|..
T Consensus 81 eeki~eld~~iedaeenlG--E~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~--g~kiDVvf~~iRlglfy~D 156 (393)
T KOG0687|consen 81 EEKIKELDEKIEDAEENLG--ESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSL--GHKIDVVFYKIRLGLFYLD 156 (393)
T ss_pred HHHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhc--ccchhhHHHHHHHHHhhcc
Confidence 4455566666666666544 35568899999999999999999999999887765433 3345566677788888765
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 390 QSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 390 ~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
. +-..+..++|-.++++- +|....-.....-|.......+|.+|-.+|-.++..+..
T Consensus 157 ~---~lV~~~iekak~liE~G--gDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS 213 (393)
T KOG0687|consen 157 H---DLVTESIEKAKSLIEEG--GDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTS 213 (393)
T ss_pred H---HHHHHHHHHHHHHHHhC--CChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccccc
Confidence 4 33444444444444432 333333344445666677888999999999888875443
No 315
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=93.73 E-value=0.084 Score=30.89 Aligned_cols=31 Identities=35% Similarity=0.519 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q psy597 500 KTKNNLASCYLKQGKYKEAEILYKQVLTRAH 530 (546)
Q Consensus 500 ~~~~~La~~y~~~g~~~~A~~~~~~al~~~~ 530 (546)
.++..+|.++...|++++|..++++++++.|
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 4678999999999999999999999998754
No 316
>KOG1914|consensus
Probab=93.71 E-value=5.4 Score=40.94 Aligned_cols=165 Identities=16% Similarity=0.151 Sum_probs=84.8
Q ss_pred HHHHHHHHHHcCCHH-------HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHH
Q psy597 338 LNNLAVLYGKRGKYK-------EAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQS---KYEEVERYYQRALEIY 407 (546)
Q Consensus 338 ~~~la~~~~~~g~~~-------~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~eA~~~~~~al~~~ 407 (546)
+...+.++...|+.. ++..+|+++++.. .......++.++..-...- +++..-.++.+++.+.
T Consensus 289 l~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l-------~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~ 361 (656)
T KOG1914|consen 289 LIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGL-------LKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIE 361 (656)
T ss_pred HHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhh
Confidence 344455666666654 4555555555443 1223333444443322222 3566666777776653
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHH-HHhhchhhHHHHHHHHHHHH
Q psy597 408 ELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQ-DRQKNKAKNREKYYQRALEI 486 (546)
Q Consensus 408 ~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~Al~~ 486 (546)
+.....++.++-..-.+..-.+.|...|.++ .+......+.....+.+ +...++..-|...|+-.+..
T Consensus 362 -------~~~~tLv~~~~mn~irR~eGlkaaR~iF~ka----R~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkk 430 (656)
T KOG1914|consen 362 -------DIDLTLVYCQYMNFIRRAEGLKAARKIFKKA----REDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKK 430 (656)
T ss_pred -------ccCCceehhHHHHHHHHhhhHHHHHHHHHHH----hhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHh
Confidence 2222223333333333333344444444444 34444443444444444 55667777777777777655
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 487 YELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 528 (546)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~ 528 (546)
+ ++.|. .-......+...++-..|..+|++++..
T Consensus 431 f-----~d~p~---yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 431 F-----GDSPE---YVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred c-----CCChH---HHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 2 22333 3334456666777777788888877765
No 317
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=93.59 E-value=0.21 Score=31.31 Aligned_cols=35 Identities=26% Similarity=0.333 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q psy597 378 KQLNNLALLCQNQSKYEEVERYYQRALEIYELKLG 412 (546)
Q Consensus 378 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~ 412 (546)
.++..||.+....++|++|+.-|++++++.++..+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~ 36 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLP 36 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC
Confidence 46788999999999999999999999999877654
No 318
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=93.45 E-value=0.94 Score=34.98 Aligned_cols=82 Identities=26% Similarity=0.319 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHH
Q psy597 397 ERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNR 476 (546)
Q Consensus 397 ~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 476 (546)
+..+++.++. +|....+.+.+|..+...|++++|++.+-.++...+... -+.+
T Consensus 8 ~~al~~~~a~--------~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~-------------------~~~a 60 (90)
T PF14561_consen 8 IAALEAALAA--------NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYE-------------------DDAA 60 (90)
T ss_dssp HHHHHHHHHH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCC-------------------CCHH
T ss_pred HHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccc-------------------ccHH
Confidence 4556667766 888899999999999999999999999999887643321 1122
Q ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q psy597 477 EKYYQRALEIYELKLGPDDSNVAKTKNNLASCY 509 (546)
Q Consensus 477 ~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y 509 (546)
...+-.... .+++.+|.+......|+.++
T Consensus 61 r~~ll~~f~----~lg~~~plv~~~RRkL~~lL 89 (90)
T PF14561_consen 61 RKRLLDIFE----LLGPGDPLVSEYRRKLASLL 89 (90)
T ss_dssp HHHHHHHHH----HH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----HcCCCChHHHHHHHHHHHHh
Confidence 233332222 34556788888877777665
No 319
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=93.42 E-value=0.25 Score=31.03 Aligned_cols=35 Identities=23% Similarity=0.293 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q psy597 336 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 370 (546)
Q Consensus 336 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 370 (546)
.++..||.+....++|++|+.-|.+++++.++.+.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~ 36 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLP 36 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC
Confidence 46889999999999999999999999999877643
No 320
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=93.38 E-value=7.4 Score=39.80 Aligned_cols=178 Identities=17% Similarity=0.060 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHHHH
Q psy597 294 TMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKY-------KEAEPLCKRALEIRE 366 (546)
Q Consensus 294 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~~ 366 (546)
.....+|+.++..++|+-|...|+-+..-+... ......+.+....|.+....+.. +....+++.|+..+.
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~D--kaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~ 286 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKND--KAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYL 286 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhc--hhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHH
Confidence 457789999999999999999999998876432 22344566777777777777743 477788888888776
Q ss_pred HhcC---CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChH---HHHHHHHHHHHH--HHcCCHHHH
Q psy597 367 KVLG---KEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSN---VAKTKNNLASCY--LKQGKYKEA 438 (546)
Q Consensus 367 ~~~~---~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~---~~~~~~~La~~y--~~~g~~~eA 438 (546)
+... ........+....+.++...|.+.+|...+-+....+-. .+.. .+..+-.+|.+| ........-
T Consensus 287 ~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~----~~l~~~~~alllE~~a~~~~~~~~~~~~~~ 362 (414)
T PF12739_consen 287 KSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILE----SDLRPFGSALLLEQAAYCYASLRSNRPSPG 362 (414)
T ss_pred hhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHh----hhhhhHhhHHHHHHHHHhhcccccCCCCcc
Confidence 6311 112345567777788888899988888877766654210 0222 566677777777 322111000
Q ss_pred HHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHH
Q psy597 439 EILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYE 488 (546)
Q Consensus 439 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~ 488 (546)
..-+++.- ......+..+...|+...|..+|..|+..|.
T Consensus 363 ~~r~RK~a-----------f~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 363 LTRFRKYA-----------FHMVLAGHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred chhhHHHH-----------HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 00000000 0011123347788899999999999998875
No 321
>KOG0686|consensus
Probab=93.23 E-value=2.3 Score=41.94 Aligned_cols=107 Identities=20% Similarity=0.178 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--
Q psy597 333 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELK-- 410 (546)
Q Consensus 333 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~-- 410 (546)
..-.++..+|.-|...|+++.|+++|-++...+... ......+.++-.+-...|+|.....+-.+|.......
T Consensus 148 siRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~-----khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~ 222 (466)
T KOG0686|consen 148 SIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSA-----KHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANEN 222 (466)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcch-----HHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhh
Confidence 346789999999999999999999999998888444 7788889999999999999999999988887752000
Q ss_pred cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy597 411 LGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 446 (546)
Q Consensus 411 ~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al 446 (546)
....-|....+.. |.+.+.+++|+.|..+|-.+.
T Consensus 223 ~~q~v~~kl~C~a--gLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 223 LAQEVPAKLKCAA--GLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred HHHhcCcchHHHH--HHHHHHHHHHHHHHHHHHhCC
Confidence 0011222334444 444555669999988876544
No 322
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=93.15 E-value=8.9 Score=37.68 Aligned_cols=146 Identities=12% Similarity=0.036 Sum_probs=94.6
Q ss_pred CChhHHHHHHHHHHHHHHh------------hcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQ------------NKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAE 355 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~------------g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~ 355 (546)
.+|....+|..+...--.. .-.+.-+.+|++|++.. +++.. .+..+-.+.....+.++..
T Consensus 14 ~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-----p~~~~---L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 14 ENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-----PDSER---LLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred hCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-----CCCHH---HHHHHHHHHHHhCCHHHHH
Confidence 4566666666665443332 22355667777777662 33333 3444444455666888888
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHH---HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC----------ChHHHHHH
Q psy597 356 PLCKRALEIREKVLGKEHPDVAKQLNNL---ALLCQNQSKYEEVERYYQRALEIYELKLGPD----------DSNVAKTK 422 (546)
Q Consensus 356 ~~~~~al~~~~~~~~~~~~~~~~~~~~l---a~~~~~~g~~~eA~~~~~~al~~~~~~~~~~----------~~~~~~~~ 422 (546)
.-+++++... |.....|..+ -......-.++.....|.+++.......... ......++
T Consensus 86 ~~we~~l~~~--------~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~ 157 (321)
T PF08424_consen 86 KKWEELLFKN--------PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVF 157 (321)
T ss_pred HHHHHHHHHC--------CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHH
Confidence 8888888773 4444444333 2233334568899999999999877664332 23456677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhh
Q psy597 423 NNLASCYLKQGKYKEAEILYKQVLTRA 449 (546)
Q Consensus 423 ~~La~~y~~~g~~~eA~~~~~~al~~~ 449 (546)
..+.......|..+.|+..++-.++..
T Consensus 158 ~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 158 LRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 778888889999999999999998864
No 323
>KOG1538|consensus
Probab=93.11 E-value=12 Score=39.24 Aligned_cols=29 Identities=10% Similarity=0.140 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy597 418 VAKTKNNLASCYLKQGKYKEAEILYKQVL 446 (546)
Q Consensus 418 ~~~~~~~La~~y~~~g~~~eA~~~~~~al 446 (546)
...+|+-.|..+....+|++|.+.|.++=
T Consensus 803 ~~dVy~pyaqwLAE~DrFeEAqkAfhkAG 831 (1081)
T KOG1538|consen 803 KDDVYMPYAQWLAENDRFEEAQKAFHKAG 831 (1081)
T ss_pred cccccchHHHHhhhhhhHHHHHHHHHHhc
Confidence 34455666666667777777776665553
No 324
>KOG4507|consensus
Probab=93.06 E-value=0.1 Score=53.15 Aligned_cols=112 Identities=21% Similarity=0.172 Sum_probs=87.0
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChH
Q psy597 296 LNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPD 375 (546)
Q Consensus 296 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 375 (546)
++..|..+...|+...|+.++..|+...+. .....+.+||.+....|-...|-.++.+++.+. ..
T Consensus 610 ln~aglywr~~gn~~~a~~cl~~a~~~~p~-------~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~--------~s 674 (886)
T KOG4507|consen 610 LNEAGLYWRAVGNSTFAIACLQRALNLAPL-------QQDVPLVNLANLLIHYGLHLDATKLLLQALAIN--------SS 674 (886)
T ss_pred eecccceeeecCCcHHHHHHHHHHhccChh-------hhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc--------cc
Confidence 344455566689999999999999876432 223357789999999999999999999999985 44
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q psy597 376 VAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYL 430 (546)
Q Consensus 376 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~ 430 (546)
.+..++.+|..+..+.+.+.|++.|+.|++. ++....+-..|-.+-+
T Consensus 675 epl~~~~~g~~~l~l~~i~~a~~~~~~a~~~--------~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 675 EPLTFLSLGNAYLALKNISGALEAFRQALKL--------TTKCPECENSLKLIRC 721 (886)
T ss_pred CchHHHhcchhHHHHhhhHHHHHHHHHHHhc--------CCCChhhHHHHHHHHH
Confidence 4567888999999999999999999999998 5555555554444433
No 325
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=92.88 E-value=0.14 Score=29.80 Aligned_cols=30 Identities=37% Similarity=0.548 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q psy597 420 KTKNNLASCYLKQGKYKEAEILYKQVLTRA 449 (546)
Q Consensus 420 ~~~~~La~~y~~~g~~~eA~~~~~~al~~~ 449 (546)
.++..+|.++...|++++|...|.+++...
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~ 31 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELD 31 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 467899999999999999999999998764
No 326
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=92.85 E-value=8.2 Score=36.01 Aligned_cols=57 Identities=23% Similarity=0.153 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhh
Q psy597 393 YEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK-QGKYKEAEILYKQVLTRA 449 (546)
Q Consensus 393 ~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~-~g~~~eA~~~~~~al~~~ 449 (546)
.+.|...|+.|+++....++|.+|.......|.+..|+. .++.++|..+.++++.-+
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~A 201 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA 201 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 568999999999998887888889888888888877665 599999999988888754
No 327
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=92.77 E-value=9 Score=36.31 Aligned_cols=220 Identities=16% Similarity=0.133 Sum_probs=122.6
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYK-EAEPLCKRALEIRE 366 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~~ 366 (546)
.+......++.=+..+...|++..|.++..-.++.+.+. .. +.......+++.+....+.-+ +-..+..+++...
T Consensus 5 ky~eAidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~--~~-~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS- 80 (260)
T PF04190_consen 5 KYDEAIDLLYSGALILLKHGQYGSGADLALLLIEVYEKS--ED-PVDEESIARLIELISLFPPEEPERKKFIKAAIKWS- 80 (260)
T ss_dssp -HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT--T----SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHH-
T ss_pred cHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHc--CC-CCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-
Confidence 445667778888888999999999999888888888775 22 212233456677776665433 4566777777776
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------HHHHhcCCCChHHHHHHHHHH-HHHHHcCCHHH
Q psy597 367 KVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALE--------IYELKLGPDDSNVAKTKNNLA-SCYLKQGKYKE 437 (546)
Q Consensus 367 ~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~--------~~~~~~~~~~~~~~~~~~~La-~~y~~~g~~~e 437 (546)
..+......+..+..+|..+++.|++.+|..+|-.+-+ +.........+.....+...| ..|...|+...
T Consensus 81 -~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~ 159 (260)
T PF04190_consen 81 -KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRD 159 (260)
T ss_dssp -HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHH
T ss_pred -ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHH
Confidence 33445556788999999999999999999998842211 111100011233333444333 44778899999
Q ss_pred HHHHHHHHHHhhhhc----c-----cCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q psy597 438 AEILYKQVLTRAHER----E-----FGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASC 508 (546)
Q Consensus 438 A~~~~~~al~~~~~~----~-----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~ 508 (546)
|...+..-.+..... . .....+..+..+.....-+. .+...|....+.|...+.. +|.....+..+|..
T Consensus 160 A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~-~~~~~F~~L~~~Y~~~L~r-d~~~~~~L~~IG~~ 237 (260)
T PF04190_consen 160 ANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCER-DNLPLFKKLCEKYKPSLKR-DPSFKEYLDKIGQL 237 (260)
T ss_dssp HHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHH-T-HHHHHHHHHHTHH---H-HHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhc-CcHHHHHHHHHHhCccccc-cHHHHHHHHHHHHH
Confidence 998887777652211 1 11111222222222221111 1235566655555554432 46677788889999
Q ss_pred HHHcCC
Q psy597 509 YLKQGK 514 (546)
Q Consensus 509 y~~~g~ 514 (546)
|+....
T Consensus 238 yFgi~~ 243 (260)
T PF04190_consen 238 YFGIQP 243 (260)
T ss_dssp HH---S
T ss_pred HCCCCC
Confidence 887544
No 328
>KOG2581|consensus
Probab=92.68 E-value=11 Score=37.23 Aligned_cols=145 Identities=18% Similarity=0.174 Sum_probs=104.5
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHH
Q psy597 300 ALVYRDQNKYKEAANLLNDALTIREKTLGE--NHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVA 377 (546)
Q Consensus 300 a~~~~~~g~~~~A~~~~~~al~~~~~~~g~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 377 (546)
...++.+.++.+|...-+..+.-.... .. -+-..+.+|+.+..+|...|+...-...+..-+... .++.+....+
T Consensus 133 ~Lfl~d~K~~kea~~~~~~~l~~i~~~-nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtA--tLrhd~e~qa 209 (493)
T KOG2581|consen 133 LLFLIDQKEYKEADKISDALLASISIQ-NRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTA--TLRHDEEGQA 209 (493)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhc-chhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHh--hhcCcchhHH
Confidence 344455788999988877765432111 00 023356788899999999999877777776665543 3345566677
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 378 KQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 378 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
...+.|-..|...+.|+.|.....++.-- .. ..+...+..++.+|.+..-+++|..|.+++-+|+..+|.
T Consensus 210 vLiN~LLr~yL~n~lydqa~~lvsK~~~p--e~--~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 210 VLINLLLRNYLHNKLYDQADKLVSKSVYP--EA--ASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhhcccCc--cc--cccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 88888889999999999998887765421 00 113367788889999999999999999999999998875
No 329
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.67 E-value=1.2 Score=38.29 Aligned_cols=91 Identities=16% Similarity=0.021 Sum_probs=72.2
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
.+......+..+..+-...++.+++...+...--+ .|.....-..-|.++...|+|.+|+.+++.+.+.
T Consensus 5 C~~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvL--------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~--- 73 (160)
T PF09613_consen 5 CSDEIVGGLIEVLSVALRLGDPDDAEALLDALRVL--------RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER--- 73 (160)
T ss_pred CcHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc---
Confidence 34556667777788888888999998888766655 4666778888999999999999999999997654
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHH
Q psy597 368 VLGKEHPDVAKQLNNLALLCQNQSKYE 394 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~~~g~~~ 394 (546)
.|....+--.++.|++.+|+.+
T Consensus 74 -----~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 74 -----APGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred -----CCCChHHHHHHHHHHHHcCChH
Confidence 3666777777888888888864
No 330
>KOG1258|consensus
Probab=92.52 E-value=15 Score=38.28 Aligned_cols=204 Identities=10% Similarity=-0.003 Sum_probs=134.5
Q ss_pred cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q psy597 308 KYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLC 387 (546)
Q Consensus 308 ~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 387 (546)
...+.+-.|+..+...-....+..+.....|......-...|+++...-.|++++--+ ......|...+...
T Consensus 270 ~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c--------A~Y~efWiky~~~m 341 (577)
T KOG1258|consen 270 EEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC--------ALYDEFWIKYARWM 341 (577)
T ss_pred hHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH--------hhhHHHHHHHHHHH
Confidence 3344444444444332222234455566778888888899999999999999998776 66778899999999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHH
Q psy597 388 QNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQD 467 (546)
Q Consensus 388 ~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 467 (546)
...|+.+-|...+.++.++. .+..+.+...-+.+-...|++..|...++.+....+ +............
T Consensus 342 ~~~~~~~~~~~~~~~~~~i~-------~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~p----g~v~~~l~~~~~e 410 (577)
T KOG1258|consen 342 ESSGDVSLANNVLARACKIH-------VKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYP----GLVEVVLRKINWE 410 (577)
T ss_pred HHcCchhHHHHHHHhhhhhc-------CCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCC----chhhhHHHHHhHH
Confidence 99999999999999999884 344555666677788889999999999999887642 2222222223335
Q ss_pred HhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHhhhh
Q psy597 468 RQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCY-LKQGKYKEAEILYKQVLTRAHER 532 (546)
Q Consensus 468 ~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y-~~~g~~~~A~~~~~~al~~~~~~ 532 (546)
...|....+.. +.......... ..+.......+...++.. .-.++.+.|...+.+++...|..
T Consensus 411 ~r~~~~~~~~~-~~~l~s~~~~~-~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~ 474 (577)
T KOG1258|consen 411 RRKGNLEDANY-KNELYSSIYEG-KENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDC 474 (577)
T ss_pred HHhcchhhhhH-HHHHHHHhccc-ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCcc
Confidence 55666665553 22222211110 111223344455566544 44688999999999999877654
No 331
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=92.24 E-value=0.74 Score=31.44 Aligned_cols=39 Identities=26% Similarity=0.358 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Q psy597 378 KQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNN 424 (546)
Q Consensus 378 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~ 424 (546)
..++.+|..+++.|+|++|..+.+.++++ .|.+..+...
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~--------eP~N~Qa~~L 40 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEI--------EPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH--------TTS-HHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhh--------CCCcHHHHHH
Confidence 35788999999999999999999999999 6666555433
No 332
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=92.20 E-value=0.36 Score=32.98 Aligned_cols=34 Identities=21% Similarity=0.207 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhc
Q psy597 500 KTKNNLASCYLKQGKYKEAEILYKQVLTRAHERE 533 (546)
Q Consensus 500 ~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~~~ 533 (546)
++++.+|..+.+.|+|++|..+.+.++++-|++.
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~ 35 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNR 35 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-H
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcH
Confidence 4678899999999999999999999999988764
No 333
>KOG3783|consensus
Probab=92.20 E-value=16 Score=37.72 Aligned_cols=76 Identities=20% Similarity=0.127 Sum_probs=62.5
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh
Q psy597 372 EHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGK-YKEAEILYKQVLTR 448 (546)
Q Consensus 372 ~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~-~~eA~~~~~~al~~ 448 (546)
+..+...-+..+|.++..+|+...|..+|..+++... ....+....+.+++.+|.+|+.+|. ..++..++.+|-..
T Consensus 444 d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~-~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~ 520 (546)
T KOG3783|consen 444 DSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKES-KRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREY 520 (546)
T ss_pred CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-hhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhh
Confidence 4455666778889999999999999999999987632 2234556678899999999999999 99999999988765
No 334
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=92.02 E-value=14 Score=41.74 Aligned_cols=140 Identities=15% Similarity=0.122 Sum_probs=91.1
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHH
Q psy597 298 ILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVA 377 (546)
Q Consensus 298 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 377 (546)
....++.....|+.|+..|++...-+ +....--.+.+..|......-.-..--+.|.+|+..+++..+ .+..+
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 552 (932)
T PRK13184 480 AVPDAFLAEKLYDQALIFYRRIRESF-----PGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG--GVGAP 552 (932)
T ss_pred cCcHHHHhhHHHHHHHHHHHHHhhcC-----CCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC--CCCCc
Confidence 34466677777888888888776654 333444567888888777654433333678888888877743 45566
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH----HHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 378 KQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLA----SCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 378 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La----~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
.-|...|.+|..+|++++-+++|.-|++.| +.+|..+...-.+. .+... +...|..+.--++..+|+
T Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 623 (932)
T PRK13184 553 LEYLGKALVYQRLGEYNEEIKSLLLALKRY-----SQHPEISRLRDHLVYRLHESLYK--HRREALVFMLLALWIAPE 623 (932)
T ss_pred hHHHhHHHHHHHhhhHHHHHHHHHHHHHhc-----CCCCccHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhCcc
Confidence 678888999999999999999999999886 44555544333222 22221 234455555555555544
No 335
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.93 E-value=1.3 Score=37.29 Aligned_cols=89 Identities=16% Similarity=0.160 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q psy597 332 AAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKL 411 (546)
Q Consensus 332 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~ 411 (546)
......+......-...++++++..++...--+. |.....-..-|.++...|++++|+..++...+-
T Consensus 7 ~~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLr--------P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~----- 73 (153)
T TIGR02561 7 NRLLGGLIEVLMYALRSADPYDAQAMLDALRVLR--------PNLKELDMFDGWLLIARGNYDEAARILRELLSS----- 73 (153)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------CCccccchhHHHHHHHcCCHHHHHHHHHhhhcc-----
Confidence 3445566666666667899999999888776664 777888888899999999999999999988764
Q ss_pred CCCChHHHHHHHHHHHHHHHcCCHH
Q psy597 412 GPDDSNVAKTKNNLASCYLKQGKYK 436 (546)
Q Consensus 412 ~~~~~~~~~~~~~La~~y~~~g~~~ 436 (546)
.+..+.+.-.++.|+..+|+.+
T Consensus 74 ---~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 74 ---AGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred ---CCCchHHHHHHHHHHHhcCChH
Confidence 4455666777888888888754
No 336
>KOG0687|consensus
Probab=91.71 E-value=12 Score=35.86 Aligned_cols=114 Identities=13% Similarity=0.139 Sum_probs=76.3
Q ss_pred ChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy597 289 HPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 368 (546)
Q Consensus 289 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 368 (546)
......++...|..|...|+-+.|.+.+.+.....-.. +....+.-+...+|..|....-..+.++-....++.
T Consensus 100 E~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~--g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~---- 173 (393)
T KOG0687|consen 100 ESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSL--GHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEE---- 173 (393)
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhc--ccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHh----
Confidence 35677889999999999999999999998887654443 334455566677777776554444444333333333
Q ss_pred cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 369 LGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYEL 409 (546)
Q Consensus 369 ~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~ 409 (546)
|+|....-..-..-|..+....+|.+|-..|-.++..+..
T Consensus 174 -GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS 213 (393)
T KOG0687|consen 174 -GGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTS 213 (393)
T ss_pred -CCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccccc
Confidence 2443433444445677777788899998888888776543
No 337
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=91.69 E-value=0.86 Score=35.19 Aligned_cols=83 Identities=19% Similarity=0.073 Sum_probs=51.0
Q ss_pred hHHHhhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHH
Q psy597 200 QFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVA 279 (546)
Q Consensus 200 ~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~ 279 (546)
.+..+......+|.+..+.+.+|..+...|++++|+..+-.++..-+... .+.+...+...+...
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~--~~~ar~~ll~~f~~l------------- 71 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYE--DDAARKRLLDIFELL------------- 71 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCC--CCHHHHHHHHHHHHH-------------
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccc--ccHHHHHHHHHHHHc-------------
Confidence 34445555567789999999999999999999999999988776533322 122222222222222
Q ss_pred HHhccCCCCChhHHHHHHHHHHHH
Q psy597 280 QILGSGGHDHPDVATMLNILALVY 303 (546)
Q Consensus 280 ~~l~~~~~~~~~~~~~~~~la~~~ 303 (546)
+..+|........|+.++
T Consensus 72 ------g~~~plv~~~RRkL~~lL 89 (90)
T PF14561_consen 72 ------GPGDPLVSEYRRKLASLL 89 (90)
T ss_dssp -------TT-HHHHHHHHHHHHHH
T ss_pred ------CCCChHHHHHHHHHHHHh
Confidence 556777777766666654
No 338
>KOG0985|consensus
Probab=91.53 E-value=27 Score=39.02 Aligned_cols=207 Identities=19% Similarity=0.159 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------H--HHHhcCchhHHHhhHHHHHhhhhhhHHH----HHHH--HHH
Q psy597 214 RLRTLHNLVIQYASQGRYEVAVPLCKQALE------D--LEKTSGKYEAAETLEDCALRSRKESYDI----VKQA--KVA 279 (546)
Q Consensus 214 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~------~--~~~~~~~~~~a~~~~~~~l~~~~~~~~~----~~~~--~~~ 279 (546)
.+.+|..+|.+-...|...+|++.|-+|-+ . .....+.++....++..+.....+..-. ...+ ...
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyikadDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl 1182 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRL 1182 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhcCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchH
Confidence 457889999999999999999988876522 1 1122355666666655554333322111 0111 011
Q ss_pred HHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy597 280 QILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCK 359 (546)
Q Consensus 280 ~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 359 (546)
..++.- -..|..+. .-..|.-++..|.|+.|.-+|... .-+..||..+..+|+|..|....+
T Consensus 1183 ~elE~f-i~gpN~A~-i~~vGdrcf~~~~y~aAkl~y~~v----------------SN~a~La~TLV~LgeyQ~AVD~aR 1244 (1666)
T KOG0985|consen 1183 TELEEF-IAGPNVAN-IQQVGDRCFEEKMYEAAKLLYSNV----------------SNFAKLASTLVYLGEYQGAVDAAR 1244 (1666)
T ss_pred HHHHHH-hcCCCchh-HHHHhHHHhhhhhhHHHHHHHHHh----------------hhHHHHHHHHHHHHHHHHHHHHhh
Confidence 111100 01222222 334577777778887776665443 346678888889999999999988
Q ss_pred HHHHHH--HH---------------hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Q psy597 360 RALEIR--EK---------------VLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTK 422 (546)
Q Consensus 360 ~al~~~--~~---------------~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~ 422 (546)
+|-... +. ..|-+---.+.-+-.+...|...|-|++-+..++.++-+ .......+
T Consensus 1245 KAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGL--------ERAHMgmf 1316 (1666)
T KOG0985|consen 1245 KANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGL--------ERAHMGMF 1316 (1666)
T ss_pred hccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhch--------hHHHHHHH
Confidence 875431 11 011111111223445666777788888888888877776 34444566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 423 NNLASCYLKQGKYKEAEILYKQVLT 447 (546)
Q Consensus 423 ~~La~~y~~~g~~~eA~~~~~~al~ 447 (546)
..||.+|.+- ++++-.++++--..
T Consensus 1317 TELaiLYsky-kp~km~EHl~LFws 1340 (1666)
T KOG0985|consen 1317 TELAILYSKY-KPEKMMEHLKLFWS 1340 (1666)
T ss_pred HHHHHHHHhc-CHHHHHHHHHHHHH
Confidence 7777777553 46666666554433
No 339
>KOG4507|consensus
Probab=91.36 E-value=1.8 Score=44.52 Aligned_cols=100 Identities=18% Similarity=0.180 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHH-hhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 293 ATMLNILALVYRD-QNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 371 (546)
Q Consensus 293 ~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 371 (546)
.+.+..++..|++ +|+..+|..++..++.+.... ..-.++..+|.++.+.|...+|--.+..|+.-+
T Consensus 212 sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h------~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA------ 279 (886)
T KOG4507|consen 212 SWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRH------NKDIALLSLATVLHRAGFSADAAVILHAALDDA------ 279 (886)
T ss_pred hHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcc------cccchhhhHHHHHHHcccccchhheeehhccCC------
Confidence 3445555655554 799999999999999875322 223467889999999999999988887777654
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 372 EHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406 (546)
Q Consensus 372 ~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 406 (546)
+....-++.+|.++...|++.....+|..+.+.
T Consensus 280 --~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~ 312 (886)
T KOG4507|consen 280 --DFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQA 312 (886)
T ss_pred --ccccccceeHHHHHHHHhhhhhhhhhhhhhhcc
Confidence 445555888999999999999998888877765
No 340
>PRK10941 hypothetical protein; Provisional
Probab=90.95 E-value=2.1 Score=40.61 Aligned_cols=81 Identities=11% Similarity=0.117 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q psy597 333 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLG 412 (546)
Q Consensus 333 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~ 412 (546)
.....+.++-.+|...++++.|+.+.+..+.+. |+.+.-+.-.|.+|.++|.+..|..-++..++.+
T Consensus 179 il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~--------P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~----- 245 (269)
T PRK10941 179 VIRKLLDTLKAALMEEKQMELALRASEALLQFD--------PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC----- 245 (269)
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC-----
Confidence 456778899999999999999999999999985 7777778889999999999999999999999873
Q ss_pred CCChHHHHHHHHHH
Q psy597 413 PDDSNVAKTKNNLA 426 (546)
Q Consensus 413 ~~~~~~~~~~~~La 426 (546)
|++|........+.
T Consensus 246 P~dp~a~~ik~ql~ 259 (269)
T PRK10941 246 PEDPISEMIRAQIH 259 (269)
T ss_pred CCchhHHHHHHHHH
Confidence 55665554444443
No 341
>KOG0686|consensus
Probab=90.58 E-value=5.5 Score=39.35 Aligned_cols=107 Identities=19% Similarity=0.146 Sum_probs=78.0
Q ss_pred hhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH---H
Q psy597 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR---E 366 (546)
Q Consensus 290 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---~ 366 (546)
...-.++..+|.-|...|+++.|+..|-++-+.+.. ...+...+.++-.+-...|+|..-..+..+|.... .
T Consensus 147 EsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs-----~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~ 221 (466)
T KOG0686|consen 147 ESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTS-----AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANE 221 (466)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc-----hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhh
Confidence 445677889999999999999999999998887743 46778889999999999999999998888887662 0
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy597 367 KVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRAL 404 (546)
Q Consensus 367 ~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al 404 (546)
.. ...-|....++ -|.+....++|..|..+|-.+.
T Consensus 222 ~~-~q~v~~kl~C~--agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 222 NL-AQEVPAKLKCA--AGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred hH-HHhcCcchHHH--HHHHHHHHHHHHHHHHHHHhCC
Confidence 00 00012223344 4445555668998888886553
No 342
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=90.58 E-value=4.3 Score=33.14 Aligned_cols=59 Identities=22% Similarity=0.326 Sum_probs=44.4
Q ss_pred CcCHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHhhh
Q psy597 79 GLNEAQVMTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSSEQANSQ 137 (546)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~~~~~q 137 (546)
|.+..+++..|++.+...|.|++.++.++.+|..+-.-+++|+..+-...........+
T Consensus 11 ~~~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~ 69 (120)
T PF12325_consen 11 GGPSVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKE 69 (120)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457788888888888999999888888888888888888887776666555444333
No 343
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.55 E-value=1.6 Score=38.90 Aligned_cols=79 Identities=27% Similarity=0.233 Sum_probs=59.3
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q psy597 350 KYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCY 429 (546)
Q Consensus 350 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y 429 (546)
.-+.|...|-++-. ...-..+...+.||..|. ..+.++|+..+.++++++. +++...+..+..|+.+|
T Consensus 121 ~d~~A~~~fL~~E~-------~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~----~~~~~n~eil~sLas~~ 188 (203)
T PF11207_consen 121 GDQEALRRFLQLEG-------TPELETAELQYALATYYT-KRDPEKTIQLLLRALELSN----PDDNFNPEILKSLASIY 188 (203)
T ss_pred CcHHHHHHHHHHcC-------CCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcC----CCCCCCHHHHHHHHHHH
Confidence 34566666555432 223456778888888777 6789999999999999843 33455688899999999
Q ss_pred HHcCCHHHHHH
Q psy597 430 LKQGKYKEAEI 440 (546)
Q Consensus 430 ~~~g~~~eA~~ 440 (546)
..+|+++.|.-
T Consensus 189 ~~~~~~e~AYi 199 (203)
T PF11207_consen 189 QKLKNYEQAYI 199 (203)
T ss_pred HHhcchhhhhh
Confidence 99999999863
No 344
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=90.35 E-value=9.2 Score=38.03 Aligned_cols=109 Identities=20% Similarity=0.144 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhc--CC-C-------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 294 TMLNILALVYRDQNKYKEAANLLNDALTIREKTL--GE-N-------HAAVAATLNNLAVLYGKRGKYKEAEPLCKRALE 363 (546)
Q Consensus 294 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--g~-~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 363 (546)
.+-..=|..++.+++|..|..-|..+++++.+-. ++ . ......+-..+..||..+++.+.|+....+.+.
T Consensus 177 ~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~ 256 (569)
T PF15015_consen 177 QVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSIN 256 (569)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhh
Confidence 3444456778889999999999999999886531 11 0 111234456789999999999999999999998
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy597 364 IREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELK 410 (546)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~ 410 (546)
+ +|....-+...|.++..+.+|.+|-+.+--+.-+|--.
T Consensus 257 l--------nP~~frnHLrqAavfR~LeRy~eAarSamia~ymywl~ 295 (569)
T PF15015_consen 257 L--------NPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMYWLS 295 (569)
T ss_pred c--------CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8 48888888999999999999999998887776665433
No 345
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=90.09 E-value=17 Score=34.33 Aligned_cols=114 Identities=12% Similarity=0.112 Sum_probs=79.9
Q ss_pred ChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy597 289 HPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 368 (546)
Q Consensus 289 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 368 (546)
......++.++|..|...++.+.+.+...+.+...-.. +-...+.-+-..+|.+|..+.=.++.++.....++.
T Consensus 111 E~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~st--g~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEk---- 184 (412)
T COG5187 111 ETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMST--GLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEK---- 184 (412)
T ss_pred chHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhc--ccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHh----
Confidence 35667899999999999999999999999888765444 334445556667888887766666666666665554
Q ss_pred cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 369 LGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYEL 409 (546)
Q Consensus 369 ~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~ 409 (546)
|++....-..-...|..+....+|.+|-..+-..+..+..
T Consensus 185 -GgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S 224 (412)
T COG5187 185 -GGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFES 224 (412)
T ss_pred -CCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhccccc
Confidence 2443333344445677777778888888888877766543
No 346
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.83 E-value=0.44 Score=26.97 Aligned_cols=24 Identities=38% Similarity=0.474 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q psy597 500 KTKNNLASCYLKQGKYKEAEILYK 523 (546)
Q Consensus 500 ~~~~~La~~y~~~g~~~~A~~~~~ 523 (546)
.+...+|.++..+|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 467889999999999999998876
No 347
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.73 E-value=0.45 Score=26.95 Aligned_cols=24 Identities=38% Similarity=0.474 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q psy597 420 KTKNNLASCYLKQGKYKEAEILYK 443 (546)
Q Consensus 420 ~~~~~La~~y~~~g~~~eA~~~~~ 443 (546)
.+..++|.++..+|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 467889999999999999998875
No 348
>KOG2422|consensus
Probab=89.18 E-value=31 Score=35.98 Aligned_cols=152 Identities=18% Similarity=0.198 Sum_probs=95.3
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCC-------------CH---HHHHHHHHHHHHHHHcCCH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGEN-------------HA---AVAATLNNLAVLYGKRGKY 351 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~-------------~~---~~~~~~~~la~~~~~~g~~ 351 (546)
.+|.....+..++.++..+|+.+.|.....+++-.+...+.+. .| ...-+++..-..+...|-+
T Consensus 279 ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~ 358 (665)
T KOG2422|consen 279 SSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCW 358 (665)
T ss_pred cCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCCh
Confidence 5688899999999999999999999999999998877653221 12 1223344444566788999
Q ss_pred HHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q psy597 352 KEAEPLCKRALEIREKVLGKE-HPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYL 430 (546)
Q Consensus 352 ~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~ 430 (546)
..|.++++-.+.+- +. +|. -+.+.+-.......+|.=-+..++..-.. ... ..-|+... -..+|..|.
T Consensus 359 rTA~E~cKlllsLd-----p~eDPl--~~l~~ID~~ALrareYqwiI~~~~~~e~~-n~l--~~~PN~~y-S~AlA~f~l 427 (665)
T KOG2422|consen 359 RTALEWCKLLLSLD-----PSEDPL--GILYLIDIYALRAREYQWIIELSNEPENM-NKL--SQLPNFGY-SLALARFFL 427 (665)
T ss_pred HHHHHHHHHHhhcC-----CcCCch--hHHHHHHHHHHHHHhHHHHHHHHHHHHhh-ccH--hhcCCchH-HHHHHHHHH
Confidence 99999999988873 11 222 22222222333445555555555443221 111 11233222 234666777
Q ss_pred HcCC---HHHHHHHHHHHHHhhh
Q psy597 431 KQGK---YKEAEILYKQVLTRAH 450 (546)
Q Consensus 431 ~~g~---~~eA~~~~~~al~~~~ 450 (546)
.... -..|...+.+|+...|
T Consensus 428 ~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 428 RKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred hcCChhhHHHHHHHHHHHHHhCc
Confidence 6665 5788888888888766
No 349
>KOG3824|consensus
Probab=89.15 E-value=0.83 Score=43.07 Aligned_cols=74 Identities=23% Similarity=0.253 Sum_probs=62.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChH
Q psy597 338 LNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSN 417 (546)
Q Consensus 338 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~ 417 (546)
-.+.|.-....|+.++|..+|+.|+.+. |....++..+|......++.-+|-.+|-+|+.+ +|.
T Consensus 119 Al~~A~~~~~~Gk~ekA~~lfeHAlala--------P~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti--------sP~ 182 (472)
T KOG3824|consen 119 ALKAAGRSRKDGKLEKAMTLFEHALALA--------PTNPQILIEMGQFREMHNEIVEADQCYVKALTI--------SPG 182 (472)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHhcC--------CCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee--------CCC
Confidence 3445555668899999999999999995 888889999999999999999999999999998 777
Q ss_pred HHHHHHHHHH
Q psy597 418 VAKTKNNLAS 427 (546)
Q Consensus 418 ~~~~~~~La~ 427 (546)
...++.+.+.
T Consensus 183 nseALvnR~R 192 (472)
T KOG3824|consen 183 NSEALVNRAR 192 (472)
T ss_pred chHHHhhhhc
Confidence 7777666543
No 350
>PRK10941 hypothetical protein; Provisional
Probab=89.14 E-value=2.2 Score=40.55 Aligned_cols=70 Identities=14% Similarity=0.064 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcc
Q psy597 376 VAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHERE 453 (546)
Q Consensus 376 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~ 453 (546)
....+.++-.+|...++++.|+.+.+..+.+ .|..+.-+...|.+|.++|.+..|..-++..++..|+.+
T Consensus 180 l~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l--------~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp 249 (269)
T PRK10941 180 IRKLLDTLKAALMEEKQMELALRASEALLQF--------DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDP 249 (269)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCch
Confidence 4567788899999999999999999999998 777777788899999999999999999999999877654
No 351
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=88.79 E-value=1.8 Score=34.46 Aligned_cols=49 Identities=31% Similarity=0.424 Sum_probs=42.7
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHH
Q psy597 85 VMTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSSEQ 133 (546)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~~ 133 (546)
-+..|..++..+-.+...|+.++..|-+||.-|+-|...++.++.+..+
T Consensus 9 ~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 9 RLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556778888899999999999999999999999999999888877766
No 352
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=88.66 E-value=4.9 Score=39.84 Aligned_cols=96 Identities=17% Similarity=0.118 Sum_probs=70.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC---h---H----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q psy597 342 AVLYGKRGKYKEAEPLCKRALEIREKVLGKEH---P---D----VAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKL 411 (546)
Q Consensus 342 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~---~----~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~ 411 (546)
|..+++.++|..|.--|..+++++.+..-... + + ...+-..|..||...++.+-|+....+.+.+
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~l----- 257 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINL----- 257 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhc-----
Confidence 45566777777777777777777755321111 1 1 2234567889999999999999999999988
Q ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy597 412 GPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQV 445 (546)
Q Consensus 412 ~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~a 445 (546)
+|....-+..-|.|+..+.+|.+|-..+--+
T Consensus 258 ---nP~~frnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 258 ---NPSYFRNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred ---CcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888899999999998887655433
No 353
>PRK10884 SH3 domain-containing protein; Provisional
Probab=88.56 E-value=7.2 Score=35.34 Aligned_cols=52 Identities=13% Similarity=0.190 Sum_probs=33.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy597 92 HLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSSEQANSQLEEEKK 143 (546)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~~~~~qlee~~~ 143 (546)
....++........++..|..+|+-|+.+|+.++.+....+..+..+.+...
T Consensus 119 ~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~ 170 (206)
T PRK10884 119 RTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTII 170 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445566666677777777777777777777777776666655444
No 354
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=88.44 E-value=30 Score=34.94 Aligned_cols=175 Identities=10% Similarity=0.063 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q psy597 332 AAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKL 411 (546)
Q Consensus 332 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~ 411 (546)
+....+|+.........++-+.|+...++++... |. ....++.+|...++-++...+|+++.....+..
T Consensus 299 ~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~s--------ps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~y 367 (660)
T COG5107 299 YYAEEVWFDYSEYLIGISDKQKALKTVERGIEMS--------PS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKY 367 (660)
T ss_pred hhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCC--------Cc---hheeHHHHHhhcccHHHHhhhHHHHHHHHHHHH
Confidence 4456778888888888899999999888887663 43 456678888888888888888888776543321
Q ss_pred ---------CC-CChH-HHHH------HHHHHHH-----HHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHH-HH
Q psy597 412 ---------GP-DDSN-VAKT------KNNLASC-----YLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQ-DR 468 (546)
Q Consensus 412 ---------~~-~~~~-~~~~------~~~La~~-----y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~-~~ 468 (546)
+. +++. .... ...++.| -.+..-.+.|..+|-++ ...+..........+.. +.
T Consensus 368 s~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~----rk~~~~~h~vyi~~A~~E~~ 443 (660)
T COG5107 368 SMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKL----RKEGIVGHHVYIYCAFIEYY 443 (660)
T ss_pred hhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHH----hccCCCCcceeeeHHHHHHH
Confidence 11 1110 0000 1111111 11222234444444443 33332222333333333 55
Q ss_pred hhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q psy597 469 QKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRA 529 (546)
Q Consensus 469 ~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~ 529 (546)
..+++..|-..|+-.+.. .|+........-..+...++-..|..+|++++...
T Consensus 444 ~~~d~~ta~~ifelGl~~--------f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~ 496 (660)
T COG5107 444 ATGDRATAYNIFELGLLK--------FPDSTLYKEKYLLFLIRINDEENARALFETSVERL 496 (660)
T ss_pred hcCCcchHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHH
Confidence 566777666666666544 22222223333444555666666777776665544
No 355
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=88.15 E-value=2 Score=43.06 Aligned_cols=74 Identities=12% Similarity=0.062 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy597 337 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELK 410 (546)
Q Consensus 337 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~ 410 (546)
++..|..++.-+|+|..|++.++-.---....+..-.+....+++.+|.+|..+++|.+|++.|...+-...+.
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~ 197 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRT 197 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45567788999999999999876542222222333356677889999999999999999999999998766554
No 356
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.94 E-value=3.5 Score=34.85 Aligned_cols=90 Identities=16% Similarity=0.051 Sum_probs=65.8
Q ss_pred ChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy597 289 HPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 368 (546)
Q Consensus 289 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 368 (546)
.......+......-...++.+++...+...--+ .|.....-..-|.++...|+|.+|+..++...+-.
T Consensus 6 s~~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvL--------rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~--- 74 (153)
T TIGR02561 6 SNRLLGGLIEVLMYALRSADPYDAQAMLDALRVL--------RPNLKELDMFDGWLLIARGNYDEAARILRELLSSA--- 74 (153)
T ss_pred cHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC---
Confidence 3444555666666666688999988887766555 45557777788999999999999999999887652
Q ss_pred cCCCChHHHHHHHHHHHHHHHcCCHH
Q psy597 369 LGKEHPDVAKQLNNLALLCQNQSKYE 394 (546)
Q Consensus 369 ~~~~~~~~~~~~~~la~~~~~~g~~~ 394 (546)
+..+...-.++.|+..+||.+
T Consensus 75 -----~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 75 -----GAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred -----CCchHHHHHHHHHHHhcCChH
Confidence 444555666788888777754
No 357
>KOG4521|consensus
Probab=87.28 E-value=38 Score=38.39 Aligned_cols=91 Identities=15% Similarity=0.158 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC
Q psy597 312 AANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQS 391 (546)
Q Consensus 312 A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 391 (546)
|..||.+++++.+.. +-.+.+..+..+|++.. +++.|..+..+.++-.-+...|
T Consensus 982 ~lhYYlkv~rlle~h----------------------n~~E~vcQlA~~AIe~l----~dd~ps~a~~~t~vFnhhldlg 1035 (1480)
T KOG4521|consen 982 ALHYYLKVVRLLEEH----------------------NHAEEVCQLAVKAIENL----PDDNPSVALISTTVFNHHLDLG 1035 (1480)
T ss_pred HHHHHHHHHHHHHHh----------------------ccHHHHHHHHHHHHHhC----CCcchhHHHHHHHHHHhhhchh
Confidence 566777777665443 34556666666676653 5667888888888888888888
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHH
Q psy597 392 KYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKE 437 (546)
Q Consensus 392 ~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~e 437 (546)
.+-+|...+-+ . ++....-.++..+-.+++..|+.+.
T Consensus 1036 h~~qAy~ai~~---n------pdserrrdcLRqlvivLfecg~l~~ 1072 (1480)
T KOG4521|consen 1036 HWFQAYKAILR---N------PDSERRRDCLRQLVIVLFECGELEA 1072 (1480)
T ss_pred hHHHHHHHHHc---C------CcHHHHHHHHHHHHHHHHhccchHH
Confidence 88777654432 2 4455566778888888888887653
No 358
>KOG1497|consensus
Probab=87.13 E-value=29 Score=33.33 Aligned_cols=113 Identities=18% Similarity=0.134 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q psy597 332 AAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKL 411 (546)
Q Consensus 332 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~ 411 (546)
...+.+...||.+|.+.++|..|-..+.-. .........+.......+..+|.+|...++..+|..+..++--..-..
T Consensus 100 Eqv~~irl~LAsiYE~Eq~~~~aaq~L~~I-~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~- 177 (399)
T KOG1497|consen 100 EQVASIRLHLASIYEKEQNWRDAAQVLVGI-PLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAES- 177 (399)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhcc-CcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcc-
Confidence 345678889999999999999998776432 111000001123456678899999999999999999998875443222
Q ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 412 GPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 447 (546)
Q Consensus 412 ~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~ 447 (546)
.++..........|+++-..++|-+|...|-+...
T Consensus 178 -~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels~ 212 (399)
T KOG1497|consen 178 -SNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELSQ 212 (399)
T ss_pred -cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333344445567777778888777776665543
No 359
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=87.05 E-value=5 Score=45.04 Aligned_cols=82 Identities=15% Similarity=0.161 Sum_probs=55.0
Q ss_pred hhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q psy597 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 369 (546)
Q Consensus 290 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 369 (546)
..--.+.+..|.....+-.-..--..|.+|+..+... .+.+..+--|...|.+|..+|+|++-+++|.-|++.+
T Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 582 (932)
T PRK13184 509 KEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL--HGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRY---- 582 (932)
T ss_pred ccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh--cCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhc----
Confidence 3345567777777766544333336667777776666 3344445557778888999999999999999998887
Q ss_pred CCCChHHHH
Q psy597 370 GKEHPDVAK 378 (546)
Q Consensus 370 ~~~~~~~~~ 378 (546)
++||....
T Consensus 583 -~~~~~~~~ 590 (932)
T PRK13184 583 -SQHPEISR 590 (932)
T ss_pred -CCCCccHH
Confidence 55565443
No 360
>KOG1914|consensus
Probab=86.68 E-value=43 Score=34.76 Aligned_cols=118 Identities=16% Similarity=0.143 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q psy597 309 YKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQ 388 (546)
Q Consensus 309 ~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 388 (546)
++..-.++++++.+... .+ .-++..+-..-.+..-.+.|...|.++-+.. ..+....+...+- -|.
T Consensus 347 ~~~~~~~~~~ll~~~~~-----~~--tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~------r~~hhVfVa~A~m-Ey~ 412 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDI-----DL--TLVYCQYMNFIRRAEGLKAARKIFKKAREDK------RTRHHVFVAAALM-EYY 412 (656)
T ss_pred hhhhHHHHHHHHhhhcc-----CC--ceehhHHHHHHHHhhhHHHHHHHHHHHhhcc------CCcchhhHHHHHH-HHH
Confidence 55555666666655322 22 2233333344444455666777777765542 1121222222222 244
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 389 NQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 389 ~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
..++..-|.+.|+-.+..+ ++.|.. -......+...|+-..|..+|++++..
T Consensus 413 cskD~~~AfrIFeLGLkkf-----~d~p~y---v~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 413 CSKDKETAFRIFELGLKKF-----GDSPEY---VLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred hcCChhHHHHHHHHHHHhc-----CCChHH---HHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 5788888888888887762 334433 334455667778888888888888764
No 361
>KOG2114|consensus
Probab=86.37 E-value=23 Score=38.49 Aligned_cols=49 Identities=10% Similarity=0.133 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy597 316 LNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 365 (546)
Q Consensus 316 ~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 365 (546)
|.-|+.+++.. +-+......++...|.-++..|++++|...|-+++...
T Consensus 350 y~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l 398 (933)
T KOG2114|consen 350 YKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL 398 (933)
T ss_pred HHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC
Confidence 44445555443 23344567788899999999999999999999998764
No 362
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=86.30 E-value=15 Score=35.05 Aligned_cols=81 Identities=12% Similarity=0.054 Sum_probs=67.5
Q ss_pred hhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q psy597 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 369 (546)
Q Consensus 290 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 369 (546)
.....++..++..+...|+++.+...+++.+.. +|..-..|..+-..|...|+...|+..|++.-.....-.
T Consensus 150 e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~--------dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edl 221 (280)
T COG3629 150 ELFIKALTKLAEALIACGRADAVIEHLERLIEL--------DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEEL 221 (280)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhc
Confidence 455778899999999999999999999999977 677778899999999999999999999999988766555
Q ss_pred CCCChHHHH
Q psy597 370 GKEHPDVAK 378 (546)
Q Consensus 370 ~~~~~~~~~ 378 (546)
|-++.....
T Consensus 222 gi~P~~~~~ 230 (280)
T COG3629 222 GIDPAPELR 230 (280)
T ss_pred CCCccHHHH
Confidence 555444333
No 363
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=86.27 E-value=18 Score=42.52 Aligned_cols=156 Identities=15% Similarity=0.192 Sum_probs=110.2
Q ss_pred hhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc---C-C---------------
Q psy597 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKR---G-K--------------- 350 (546)
Q Consensus 290 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~---g-~--------------- 350 (546)
...++..-.+|..+...|.+.+|+..|.+|+...+.. .|.-+.+.++-.++.+..-. | +
T Consensus 239 r~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~--~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~ 316 (1185)
T PF08626_consen 239 RCKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSS--NDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISS 316 (1185)
T ss_pred hhhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhc--CcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCC
Confidence 3456778889999999999999999999999999987 88888888887776544321 1 0
Q ss_pred -------------------------------------HHHHHHHHHHHHHHHHHhcC---CCChH--HHHHHHHHHHHHH
Q psy597 351 -------------------------------------YKEAEPLCKRALEIREKVLG---KEHPD--VAKQLNNLALLCQ 388 (546)
Q Consensus 351 -------------------------------------~~~A~~~~~~al~~~~~~~~---~~~~~--~~~~~~~la~~~~ 388 (546)
...=...+++++.++.+... ...|. ...+...++.++.
T Consensus 317 ~~~~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~ 396 (1185)
T PF08626_consen 317 STSSSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLV 396 (1185)
T ss_pred ccCccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHH
Confidence 11122345556665555421 11222 3456667777777
Q ss_pred HcC--------------------CHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 389 NQS--------------------KYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 389 ~~g--------------------~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
... .-.++..+..+++.+.-..+ +..+....+..+|.+|...|-..++.-+++.++..
T Consensus 397 ~~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l--~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~ 474 (1185)
T PF08626_consen 397 AQHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDL--SVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQ 474 (1185)
T ss_pred HhhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhC--CHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 766 67788888888887643322 24466888999999999999988888888877765
Q ss_pred h
Q psy597 449 A 449 (546)
Q Consensus 449 ~ 449 (546)
.
T Consensus 475 ~ 475 (1185)
T PF08626_consen 475 L 475 (1185)
T ss_pred h
Confidence 4
No 364
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=86.19 E-value=16 Score=34.82 Aligned_cols=76 Identities=17% Similarity=0.135 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q psy597 333 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLG 412 (546)
Q Consensus 333 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~ 412 (546)
....++..++..+...|+++.++..+++.+.. +|..-..|..+-..|...|+...|+..|++.-.....-.|
T Consensus 151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~--------dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlg 222 (280)
T COG3629 151 LFIKALTKLAEALIACGRADAVIEHLERLIEL--------DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELG 222 (280)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcC
Confidence 44678899999999999999999999999988 5888889999999999999999999999999887555555
Q ss_pred CCCh
Q psy597 413 PDDS 416 (546)
Q Consensus 413 ~~~~ 416 (546)
.++.
T Consensus 223 i~P~ 226 (280)
T COG3629 223 IDPA 226 (280)
T ss_pred CCcc
Confidence 4443
No 365
>KOG2561|consensus
Probab=86.14 E-value=33 Score=34.42 Aligned_cols=146 Identities=16% Similarity=0.032 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHH-------HHHHHHHHHHHHHcCCH---HHHHHHHHHHH
Q psy597 293 ATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAV-------AATLNNLAVLYGKRGKY---KEAEPLCKRAL 362 (546)
Q Consensus 293 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~-------~~~~~~la~~~~~~g~~---~~A~~~~~~al 362 (546)
+..++..|.+......|++|+.++-.|-+.+... .+.. +..-..+.+||+.+.+. +.|..-+.++-
T Consensus 163 glg~hekaRa~m~re~y~eAl~~LleADe~F~~C----d~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~ 238 (568)
T KOG2561|consen 163 GLGLHEKARAAMEREMYSEALLVLLEADESFSLC----DSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRAR 238 (568)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhh----hHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHH
Confidence 4455667788888889999999988887766543 2222 22334456777777653 45655555555
Q ss_pred HHHHHhcC-----------CCChHHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH--
Q psy597 363 EIREKVLG-----------KEHPDVA---KQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLA-- 426 (546)
Q Consensus 363 ~~~~~~~~-----------~~~~~~~---~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La-- 426 (546)
+-+...+| +..|..+ ..+..-|.+.+.+|+-++|..+++.+...+....-++.. ......+|
T Consensus 239 kgf~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~elki~d~~--lsllv~mGfe 316 (568)
T KOG2561|consen 239 KGFERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLELKINDET--LSLLVGMGFE 316 (568)
T ss_pred HhhhhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHeeccchH--HHHHHHcCCC
Confidence 54444444 4445443 344556999999999999999999998877665333221 11122221
Q ss_pred ----H--HHHHcCCHHHHHHHHHH
Q psy597 427 ----S--CYLKQGKYKEAEILYKQ 444 (546)
Q Consensus 427 ----~--~y~~~g~~~eA~~~~~~ 444 (546)
. +-.-.|+.+.|..++.+
T Consensus 317 esdaRlaLRsc~g~Vd~AvqfI~e 340 (568)
T KOG2561|consen 317 ESDARLALRSCNGDVDSAVQFIIE 340 (568)
T ss_pred chHHHHHHHhccccHHHHHHHHHH
Confidence 1 11234677777776643
No 366
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=85.97 E-value=17 Score=29.61 Aligned_cols=75 Identities=19% Similarity=0.021 Sum_probs=59.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh-------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy597 338 LNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHP-------DVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELK 410 (546)
Q Consensus 338 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~ 410 (546)
+..+|......+++-.++-+|++|+.+.+.....+.. -......|||..+..+|+.+-.++|++-|-+.....
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 5678888899999999999999999998877322211 124457799999999999999999999998876666
Q ss_pred cC
Q psy597 411 LG 412 (546)
Q Consensus 411 ~~ 412 (546)
.+
T Consensus 84 iP 85 (140)
T PF10952_consen 84 IP 85 (140)
T ss_pred cc
Confidence 44
No 367
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=85.06 E-value=12 Score=33.63 Aligned_cols=65 Identities=25% Similarity=0.333 Sum_probs=52.1
Q ss_pred CCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHH
Q psy597 286 GHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAE 355 (546)
Q Consensus 286 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~ 355 (546)
+...-..+.+.+.+|..|. ..+.++|+.++.+++++... ++...+.++..|+.+|...|+++.|-
T Consensus 134 ~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~----~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 134 GTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNP----DDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCC----CCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3344566888899998877 56789999999999999643 23455788999999999999999885
No 368
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=84.83 E-value=1.3 Score=40.07 Aligned_cols=60 Identities=27% Similarity=0.338 Sum_probs=50.4
Q ss_pred hhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhccCC
Q psy597 469 QKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGA 536 (546)
Q Consensus 469 ~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 536 (546)
..++...+.+.|.+|+.+ .|.....|+.+|....+.|+++.|...|++.+++.|+..+++
T Consensus 7 ~~~D~~aaaely~qal~l--------ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ga 66 (287)
T COG4976 7 ESGDAEAAAELYNQALEL--------APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGGA 66 (287)
T ss_pred ccCChHHHHHHHHHHhhc--------CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccch
Confidence 445666666777777766 788899999999999999999999999999999998876654
No 369
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=84.76 E-value=34 Score=31.94 Aligned_cols=57 Identities=25% Similarity=0.184 Sum_probs=46.7
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHh
Q psy597 473 AKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK-QGKYKEAEILYKQVLTRA 529 (546)
Q Consensus 473 ~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~-~g~~~~A~~~~~~al~~~ 529 (546)
.+.|...|+.|.++....+++.+|.......+.+..|+. .++.++|....++|+.-+
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~A 201 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA 201 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 457788999999998877888899888888888877665 599999998888877655
No 370
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=84.66 E-value=5.3 Score=40.13 Aligned_cols=74 Identities=15% Similarity=0.134 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHH
Q psy597 217 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATML 296 (546)
Q Consensus 217 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 296 (546)
++..+.+++.-.|+|..|+..++.. ++-++.. + ....+....++
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l--------------------------------~---~~V~~~~is~~ 167 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENI-DLNKKGL--------------------------------Y---TKVPACHISTY 167 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhcc-Ccccchh--------------------------------h---ccCcchheehH
Confidence 4566778889999999998877542 2111000 0 22456667889
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHHHHh
Q psy597 297 NILALVYRDQNKYKEAANLLNDALTIREKT 326 (546)
Q Consensus 297 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 326 (546)
+.+|.+|...++|.+|+..|...+-...+.
T Consensus 168 YyvGFaylMlrRY~DAir~f~~iL~yi~r~ 197 (404)
T PF10255_consen 168 YYVGFAYLMLRRYADAIRTFSQILLYIQRT 197 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999998765443
No 371
>KOG0890|consensus
Probab=84.43 E-value=43 Score=41.06 Aligned_cols=122 Identities=16% Similarity=0.107 Sum_probs=86.8
Q ss_pred CCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy597 287 HDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE 366 (546)
Q Consensus 287 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 366 (546)
......+.+|...|.+.+..|.++.|..++-+|.+.. .+.++...|..++..|+-..|+..+++.++...
T Consensus 1664 ~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r----------~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1664 NLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR----------LPEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred cccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc----------cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 3467789999999999999999999999998887652 366888999999999999999999999997753
Q ss_pred HhcCC---------CChHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q psy597 367 KVLGK---------EHPDVAKQLNNLALLCQNQSKY--EEVERYYQRALEIYELKLGPDDSNVAKTKNNLA 426 (546)
Q Consensus 367 ~~~~~---------~~~~~~~~~~~la~~~~~~g~~--~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La 426 (546)
..... +......+...++......|++ ..-+++|..+.++ .|.....++.+|
T Consensus 1734 ~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ai--------l~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1734 PDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAI--------LPEWEDKHYHLG 1796 (2382)
T ss_pred ccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHH--------cccccCceeeHH
Confidence 22100 1111223444555555555654 4567788888887 443344455555
No 372
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=84.40 E-value=1.7 Score=39.44 Aligned_cols=62 Identities=24% Similarity=0.306 Sum_probs=55.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccC
Q psy597 386 LCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFG 455 (546)
Q Consensus 386 ~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~ 455 (546)
.....++.+.|.+.|.+++++ .|.....|+.+|....+.|+++.|...|++.+++.+++..+
T Consensus 4 ~~~~~~D~~aaaely~qal~l--------ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~g 65 (287)
T COG4976 4 MLAESGDAEAAAELYNQALEL--------APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGG 65 (287)
T ss_pred hhcccCChHHHHHHHHHHhhc--------CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccc
Confidence 455789999999999999999 88899999999999999999999999999999998876533
No 373
>KOG3364|consensus
Probab=84.39 E-value=12 Score=31.06 Aligned_cols=66 Identities=20% Similarity=0.128 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 335 AATLNNLAVLYGKRGK---YKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406 (546)
Q Consensus 335 ~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 406 (546)
..+.+++|.++....+ ..+.+.+++..++. ..+...-...+.|+..+++.++|+.++.|.+..++.
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~------~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS------AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh------cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 5677888888887654 45566666666651 223445678889999999999999999999999987
No 374
>KOG2561|consensus
Probab=84.13 E-value=17 Score=36.37 Aligned_cols=120 Identities=18% Similarity=0.045 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHH
Q psy597 216 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATM 295 (546)
Q Consensus 216 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 295 (546)
..++..|.++.....|++|+.++-.|-+.+..-...+ +. .....+..
T Consensus 164 lg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~kl----------Le-----------------------~VDNyall 210 (568)
T KOG2561|consen 164 LGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKL----------LE-----------------------LVDNYALL 210 (568)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHH----------HH-----------------------hhcchhhh
Confidence 4567788888888999999988887766543322100 00 11122222
Q ss_pred HHHHHHHHHHhhc---HHHHHHHHHHHHHHHHHhc-----------CCCCHHHH---HHHHHHHHHHHHcCCHHHHHHHH
Q psy597 296 LNILALVYRDQNK---YKEAANLLNDALTIREKTL-----------GENHAAVA---ATLNNLAVLYGKRGKYKEAEPLC 358 (546)
Q Consensus 296 ~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~-----------g~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~ 358 (546)
-..+.|+|+...+ .++|..-+..+-.-+...+ |+..|..+ ..+..-|.+.+..|+-++|.+++
T Consensus 211 nLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~l 290 (568)
T KOG2561|consen 211 NLDIVWCYFRLKNITCLPDAEVRLVRARKGFERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEAL 290 (568)
T ss_pred hcchhheehhhcccccCChHHHHHHHHHHhhhhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 3334455555443 3445544444444444443 34455433 45566799999999999999999
Q ss_pred HHHHHHHHHh
Q psy597 359 KRALEIREKV 368 (546)
Q Consensus 359 ~~al~~~~~~ 368 (546)
+.+.......
T Consensus 291 e~a~~~l~el 300 (568)
T KOG2561|consen 291 ESAHAKLLEL 300 (568)
T ss_pred HHHHHHHHHe
Confidence 9998776554
No 375
>KOG1310|consensus
Probab=83.61 E-value=5.6 Score=40.66 Aligned_cols=88 Identities=19% Similarity=0.098 Sum_probs=69.1
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Q psy597 347 KRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQ---SKYEEVERYYQRALEIYELKLGPDDSNVAKTKN 423 (546)
Q Consensus 347 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~ 423 (546)
..+.+..|+..|.+++... |.....+.+.+.++.+. |+.-.|+.-...|+.+ +|....+++
T Consensus 386 y~~~~~~~i~~~s~a~q~~--------~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrl--------n~s~~kah~ 449 (758)
T KOG1310|consen 386 YESIVSGAISHYSRAIQYV--------PDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRL--------NPSIQKAHF 449 (758)
T ss_pred hhHHHHHHHHHHHHHhhhc--------cchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccC--------ChHHHHHHH
Confidence 3345677888888888774 77788888888888764 5666677777777777 888999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhh
Q psy597 424 NLASCYLKQGKYKEAEILYKQVLTRAH 450 (546)
Q Consensus 424 ~La~~y~~~g~~~eA~~~~~~al~~~~ 450 (546)
.|+.++...+++.+|+.+...+....|
T Consensus 450 ~la~aL~el~r~~eal~~~~alq~~~P 476 (758)
T KOG1310|consen 450 RLARALNELTRYLEALSCHWALQMSFP 476 (758)
T ss_pred HHHHHHHHHhhHHHhhhhHHHHhhcCc
Confidence 999999999999999988776665544
No 376
>KOG4014|consensus
Probab=83.29 E-value=31 Score=30.35 Aligned_cols=192 Identities=14% Similarity=0.136 Sum_probs=109.4
Q ss_pred ChhHHHHHHHHHHHHHH-hhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-----HcCCHHHHHHHHHHHH
Q psy597 289 HPDVATMLNILALVYRD-QNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYG-----KRGKYKEAEPLCKRAL 362 (546)
Q Consensus 289 ~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~-----~~g~~~~A~~~~~~al 362 (546)
+...+.....||..+.. +.+|++|...|.. . -+....+...+.+|..+. ..+++..|++++..+-
T Consensus 30 ~EK~Pe~C~lLgdYlEgi~knF~~A~kv~K~-------n--Cden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC 100 (248)
T KOG4014|consen 30 EEKRPESCQLLGDYLEGIQKNFQAAVKVFKK-------N--CDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIAC 100 (248)
T ss_pred ccCCchHHHHHHHHHHHHHHHHHHHHHHHHh-------c--ccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHh
Confidence 34445666677765544 3455555555544 3 222333445555555443 3467899999998887
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHH-----cCC--HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCH
Q psy597 363 EIREKVLGKEHPDVAKQLNNLALLCQN-----QSK--YEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKY 435 (546)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~la~~~~~-----~g~--~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~ 435 (546)
+. ..+.+..++|.+++. .++ .++|++++.++.++ ....+.++|...|..- .
T Consensus 101 ~~----------n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl----------~~~~aCf~LS~m~~~g--~ 158 (248)
T KOG4014|consen 101 DA----------NIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDL----------EDGEACFLLSTMYMGG--K 158 (248)
T ss_pred cc----------CCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccC----------CCchHHHHHHHHHhcc--c
Confidence 64 234556677877764 233 67899999998876 2344566676665432 1
Q ss_pred HHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHc---
Q psy597 436 KEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ--- 512 (546)
Q Consensus 436 ~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~--- 512 (546)
+++ ...+|..... ......+....+.+.|..+.-+|-++ ..+.+..++.+.|..-
T Consensus 159 ~k~-------~t~ap~~g~p-----~~~~~~~~~~kDMdka~qfa~kACel----------~~~~aCAN~SrMyklGDGv 216 (248)
T KOG4014|consen 159 EKF-------KTNAPGEGKP-----LDRAELGSLSKDMDKALQFAIKACEL----------DIPQACANVSRMYKLGDGV 216 (248)
T ss_pred hhh-------cccCCCCCCC-----cchhhhhhhhHhHHHHHHHHHHHHhc----------CChHHHhhHHHHHHccCCC
Confidence 221 1112211111 01112233345555566555555543 3455667788877542
Q ss_pred -CCHHHHHHHHHHHHHHhhhhc
Q psy597 513 -GKYKEAEILYKQVLTRAHERE 533 (546)
Q Consensus 513 -g~~~~A~~~~~~al~~~~~~~ 533 (546)
.+-++|..+-.+|.++..+-.
T Consensus 217 ~Kde~~Aekyk~rA~e~~~e~~ 238 (248)
T KOG4014|consen 217 PKDEDQAEKYKDRAKEIMEELR 238 (248)
T ss_pred CccHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999886654
No 377
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=82.93 E-value=2.7 Score=40.19 Aligned_cols=62 Identities=26% Similarity=0.411 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q psy597 354 AEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK 431 (546)
Q Consensus 354 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~ 431 (546)
|+.+|.+|+.+. |..+..|+.+|.++...|+.=.|+-+|-+++-. ......+..||..++.+
T Consensus 1 A~~~Y~~A~~l~--------P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~--------~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLL--------PSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAV--------RIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH---------TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSS--------SB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhC--------CCCCCcccchhhhhccccchHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHH
Confidence 788999999996 999999999999999999999999999999965 23347778888888877
No 378
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=82.89 E-value=30 Score=32.91 Aligned_cols=76 Identities=26% Similarity=0.280 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q psy597 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPD 414 (546)
Q Consensus 335 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~ 414 (546)
...+...+..|...|.+.+|+.+.++++.+ +|..-..+..+-.++...|+--.|...|++.-+..+.-.|-+
T Consensus 279 ~kllgkva~~yle~g~~neAi~l~qr~ltl--------dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~ 350 (361)
T COG3947 279 MKLLGKVARAYLEAGKPNEAIQLHQRALTL--------DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGID 350 (361)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCC
Confidence 345566788899999999999999999998 588888888999999999999999999999888877766654
Q ss_pred ChHH
Q psy597 415 DSNV 418 (546)
Q Consensus 415 ~~~~ 418 (546)
..+.
T Consensus 351 vdds 354 (361)
T COG3947 351 VDDS 354 (361)
T ss_pred cchh
Confidence 4433
No 379
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=82.80 E-value=56 Score=32.93 Aligned_cols=142 Identities=18% Similarity=0.062 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHH
Q psy597 216 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATM 295 (546)
Q Consensus 216 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 295 (546)
......+..++..++|..|...+...... .. + ........
T Consensus 132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~r---l~------------------------------------~-~~~~~~~~ 171 (379)
T PF09670_consen 132 DREWRRAKELFNRYDYGAAARILEELLRR---LP------------------------------------G-REEYQRYK 171 (379)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CC------------------------------------c-hhhHHHHH
Confidence 45567778889999999999999988763 11 0 11111222
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChH
Q psy597 296 LNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPD 375 (546)
Q Consensus 296 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 375 (546)
....|.-++..-++.+|.+.++..+...... ......+..+..+. ++...+.............-.+.
T Consensus 172 ~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l-----~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 239 (379)
T PF09670_consen 172 DLCEGYDAWDRFDHKEALEYLEKLLKRDKAL-----NQEREGLKELVEVL-------KALESILSALEDKKQRQKKLYYA 239 (379)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHhhhh-----HhHHHHHHHHHHHH-------HHHHhhccchhhhhccccccHHH
Confidence 3334566677889999999999987652110 00111122221111 11222222221111100000111
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 376 VAKQLNNLALLCQNQSKYEEVERYYQRALEIYEL 409 (546)
Q Consensus 376 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~ 409 (546)
....+..-|.--...|+|+.|+..+-++++++-+
T Consensus 240 ll~dLl~NA~RRa~~gryddAvarlYR~lEl~~Q 273 (379)
T PF09670_consen 240 LLADLLANAERRAAQGRYDDAVARLYRALELLAQ 273 (379)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 2222233333334689999999999999998543
No 380
>KOG3364|consensus
Probab=82.64 E-value=13 Score=30.92 Aligned_cols=70 Identities=19% Similarity=0.077 Sum_probs=53.2
Q ss_pred hhHHHHHHHHHHHHHHhh---cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy597 290 PDVATMLNILALVYRDQN---KYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 365 (546)
Q Consensus 290 ~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 365 (546)
.......+++|+++.... +..+.+.+++..+.. ..+...-...+.|+..+++.|+|+.++.+++..++.-
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~------~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS------AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE 101 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh------cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 334566788888887654 556777777777751 2344456788999999999999999999999999873
No 381
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=82.55 E-value=4 Score=26.61 Aligned_cols=26 Identities=15% Similarity=0.133 Sum_probs=23.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 381 NNLALLCQNQSKYEEVERYYQRALEI 406 (546)
Q Consensus 381 ~~la~~~~~~g~~~eA~~~~~~al~~ 406 (546)
..+|..|...|+++.|...+++.+.-
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 57899999999999999999999864
No 382
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=82.49 E-value=58 Score=32.84 Aligned_cols=143 Identities=15% Similarity=0.006 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHhhhhcccC
Q psy597 378 KQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLAS--CYLKQGKYKEAEILYKQVLTRAHEREFG 455 (546)
Q Consensus 378 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~--~y~~~g~~~eA~~~~~~al~~~~~~~~~ 455 (546)
......+.-.++.++|..|...+...... . ++ ... ...+..++. -++...++.+|.+.++..+.....
T Consensus 132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~r---l-~~-~~~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~---- 201 (379)
T PF09670_consen 132 DREWRRAKELFNRYDYGAAARILEELLRR---L-PG-REE-YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKA---- 201 (379)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh---C-Cc-hhh-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhh----
Confidence 34556677788999999999999998763 1 11 222 344555544 456788999999999998874211
Q ss_pred cccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhcc
Q psy597 456 ACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREF 534 (546)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~~~~ 534 (546)
.....+........-.+...+.............-.+.....+..-|.=-...|+|+.|...+=+++++.-+..+
T Consensus 202 ----l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~~Q~rL 276 (379)
T PF09670_consen 202 ----LNQEREGLKELVEVLKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALELLAQHRL 276 (379)
T ss_pred ----hHhHHHHHHHHHHHHHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 000001111111111112222221111111000001122222333333334589999999999999988765543
No 383
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=82.22 E-value=6 Score=31.65 Aligned_cols=47 Identities=26% Similarity=0.310 Sum_probs=35.9
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHH
Q psy597 85 VMTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSS 131 (546)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~ 131 (546)
.+..|..++..+-.+...|+.+|..|..||.-|+-|...++.++.+.
T Consensus 9 ~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 9 ALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556677777778888888888888888888888877777777654
No 384
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=82.13 E-value=17 Score=37.37 Aligned_cols=103 Identities=19% Similarity=0.148 Sum_probs=63.3
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChH
Q psy597 296 LNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPD 375 (546)
Q Consensus 296 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 375 (546)
...++..+..+|.++.|+.....- ...+. +..+.|+++.|.+...+. .
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~----------------~~rFe---LAl~lg~L~~A~~~a~~~-------------~ 345 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDP----------------DHRFE---LALQLGNLDIALEIAKEL-------------D 345 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-H----------------HHHHH---HHHHCT-HHHHHHHCCCC-------------S
T ss_pred HHHHHHHHHHCCCHHHHHhhcCCh----------------HHHhH---HHHhcCCHHHHHHHHHhc-------------C
Confidence 556667777778777766554331 22333 334778888777654431 2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy597 376 VAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 446 (546)
Q Consensus 376 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al 446 (546)
....|..||.....+|+++-|+.+|+++-+. ..|..+|...|+.+.=.++.+.+.
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~----------------~~L~lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKAKDF----------------SGLLLLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHCT-H----------------HHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhcCc----------------cccHHHHHHhCCHHHHHHHHHHHH
Confidence 3447889999999999999999999887543 345666777777655444444443
No 385
>KOG3824|consensus
Probab=82.10 E-value=13 Score=35.42 Aligned_cols=64 Identities=16% Similarity=0.164 Sum_probs=55.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcc
Q psy597 382 NLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHERE 453 (546)
Q Consensus 382 ~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~ 453 (546)
+.|.-....|+.++|...|+.|+.+ .|..+.++..+|.+....++.-+|-.+|-+++.+.|.+.
T Consensus 121 ~~A~~~~~~Gk~ekA~~lfeHAlal--------aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ns 184 (472)
T KOG3824|consen 121 KAAGRSRKDGKLEKAMTLFEHALAL--------APTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNS 184 (472)
T ss_pred HHHHHHHhccchHHHHHHHHHHHhc--------CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCch
Confidence 3444456789999999999999999 888999999999999999999999999999999876543
No 386
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=80.61 E-value=15 Score=28.75 Aligned_cols=55 Identities=29% Similarity=0.321 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q psy597 96 VEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSSEQANSQLEEEKKHLEFMSS 150 (546)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~~~~~qlee~~~~l~~~~~ 150 (546)
+=.|.+|||+|+..|-..----..--+.+...|...++.+..++.+...|.|.++
T Consensus 3 la~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~ 57 (102)
T PF10205_consen 3 LAQEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQ 57 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467778888877765443222233334455555555555555555555555544
No 387
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=80.59 E-value=4.7 Score=26.27 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=23.5
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHH
Q psy597 297 NILALVYRDQNKYKEAANLLNDALTI 322 (546)
Q Consensus 297 ~~la~~~~~~g~~~~A~~~~~~al~~ 322 (546)
+.+|.+|...|+++.|...+++.+.-
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 57899999999999999999999853
No 388
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=80.57 E-value=6.5 Score=24.30 Aligned_cols=31 Identities=23% Similarity=0.337 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH--HHHHHhh
Q psy597 500 KTKNNLASCYLKQGKYKEAEILYK--QVLTRAH 530 (546)
Q Consensus 500 ~~~~~La~~y~~~g~~~~A~~~~~--~al~~~~ 530 (546)
+.+..+|..+..+|++++|+.+|. -+..+.+
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 456788999999999999999944 6655543
No 389
>PRK10884 SH3 domain-containing protein; Provisional
Probab=80.52 E-value=32 Score=31.17 Aligned_cols=99 Identities=12% Similarity=0.140 Sum_probs=59.0
Q ss_pred CChhHHhhhhhHHHHHHHHhHhhhHHHHHhhhhhccCCCchHHHHHHHHhhHHHHHcCcCHHHHHHHHHhhhhhHHHHHH
Q psy597 22 MNQEEIMTNTKTVQQGLEALKNEHTSILNSLSETQHGGPVEEEKRNMVKNSLEIIELGLNEAQVMTALAGHLQNVEAEKQ 101 (546)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (546)
+=...-++.+..+...|..|+.|...+-..|...... ..+++. -++ +.+.......+.++.+.+
T Consensus 79 WV~~~~Ls~~p~~~~rlp~le~el~~l~~~l~~~~~~--~~~~~~-~l~-------------~~~~~~~~~~~~L~~~n~ 142 (206)
T PRK10884 79 WIPLKQLSTTPSLRTRVPDLENQVKTLTDKLNNIDNT--WNQRTA-EMQ-------------QKVAQSDSVINGLKEENQ 142 (206)
T ss_pred eEEHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHH-HHH-------------HHHHHHHHHHHHHHHHHH
Confidence 3344566677777777777777776665555443211 001111 111 222334445566888888
Q ss_pred HHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHhh
Q psy597 102 KLRTQVRRLVQENAWLRDELANTQQKLQSSEQANS 136 (546)
Q Consensus 102 ~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~~~~~ 136 (546)
+|+.++..+..++.-|..++...+.....-.-..+
T Consensus 143 ~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~wf~~G 177 (206)
T PRK10884 143 KLKNQLIVAQKKVDAANLQLDDKQRTIIMQWFMYG 177 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 88888888888887777777777766655554444
No 390
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=79.75 E-value=1.4e+02 Score=35.42 Aligned_cols=191 Identities=15% Similarity=0.070 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHH---HHHHHHh------c
Q psy597 213 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQ---AKVAQIL------G 283 (546)
Q Consensus 213 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~---~~~~~~l------~ 283 (546)
...+..-.+|..|...|+|.+|+..|..|+..++..++..-.|.++-..+....-........ ....... .
T Consensus 240 ~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~~ 319 (1185)
T PF08626_consen 240 CKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSSTS 319 (1185)
T ss_pred hhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCccC
Confidence 456778889999999999999999999999999998876655555544332111000000000 0000000 0
Q ss_pred cC--------CCCChhHH-------HH-HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy597 284 SG--------GHDHPDVA-------TM-LNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGK 347 (546)
Q Consensus 284 ~~--------~~~~~~~~-------~~-~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~ 347 (546)
.. ....|... .. .........-...+++++.+|.++.....+. -...-..++....+.++..
T Consensus 320 ~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~--~p~lv~~E~~lr~~~~l~~ 397 (1185)
T PF08626_consen 320 SSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEY--VPQLVYSEACLRFARFLVA 397 (1185)
T ss_pred ccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhcccccc--CcchHHHHHHHHHHHHHHH
Confidence 00 00000000 00 0001111122345678888888886443222 1112345667777777777
Q ss_pred cC--------------------CHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy597 348 RG--------------------KYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIY 407 (546)
Q Consensus 348 ~g--------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 407 (546)
.. .-.++..+..+++...-.. -+..+....+..+|.+|...|-.-++.-+.+.++..+
T Consensus 398 ~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~--l~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~~ 475 (1185)
T PF08626_consen 398 QHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKD--LSVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQL 475 (1185)
T ss_pred hhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhh--CCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Confidence 66 7788888888888765432 2235668899999999999999988888888887764
No 391
>KOG2581|consensus
Probab=79.64 E-value=70 Score=31.98 Aligned_cols=110 Identities=21% Similarity=0.247 Sum_probs=76.2
Q ss_pred hHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q psy597 291 DVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 370 (546)
Q Consensus 291 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 370 (546)
..+.+|+.+..+|...|+...-...+...+... .++.+....+...+.+-..|...+.|+.|.....++.--- .
T Consensus 167 i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtA--tLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe--~-- 240 (493)
T KOG2581|consen 167 IAAKLYFYLYLSYELEGRLADIRSFLHALLRTA--TLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPE--A-- 240 (493)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHh--hhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCcc--c--
Confidence 345677777788888887666666665555443 2335556666677777788888888888887776654110 0
Q ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 371 KEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406 (546)
Q Consensus 371 ~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 406 (546)
..+...+..++.+|.+..-+++|..|.+++-.|+..
T Consensus 241 ~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rk 276 (493)
T KOG2581|consen 241 ASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRK 276 (493)
T ss_pred cccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHh
Confidence 112356777888888888888999999988888876
No 392
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=79.42 E-value=21 Score=33.91 Aligned_cols=79 Identities=24% Similarity=0.230 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q psy597 293 ATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKE 372 (546)
Q Consensus 293 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 372 (546)
...+...+..|...|.+.+|+.+.++++.+ +|.....+..+-.++..+|+--.|...|++.-+..++-+|-+
T Consensus 279 ~kllgkva~~yle~g~~neAi~l~qr~ltl--------dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~ 350 (361)
T COG3947 279 MKLLGKVARAYLEAGKPNEAIQLHQRALTL--------DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGID 350 (361)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCC
Confidence 344555678888999999999999999987 677788888999999999999999999999888887777765
Q ss_pred ChHHHHH
Q psy597 373 HPDVAKQ 379 (546)
Q Consensus 373 ~~~~~~~ 379 (546)
..+...-
T Consensus 351 vddsiee 357 (361)
T COG3947 351 VDDSIEE 357 (361)
T ss_pred cchhHHH
Confidence 5444433
No 393
>PRK12798 chemotaxis protein; Reviewed
Probab=79.38 E-value=74 Score=32.07 Aligned_cols=196 Identities=14% Similarity=0.062 Sum_probs=121.7
Q ss_pred CCCChhhHHHhhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHH
Q psy597 194 SPTPPSQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIV 273 (546)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~ 273 (546)
+...|..+..+...... .....-..-|..-+-.|+-.+|...+...-..
T Consensus 93 SGGnP~vlr~L~~~d~~--~~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~----------------------------- 141 (421)
T PRK12798 93 SGGNPATLRKLLARDKL--GNFDQRLADGALAYLSGRGREARKLLAGVAPE----------------------------- 141 (421)
T ss_pred cCCCHHHHHHHHHcCCC--ChhhHHHHHHHHHHHcCCHHHHHHHhhcCChh-----------------------------
Confidence 34444444444333222 22333344555667789988888777554321
Q ss_pred HHHHHHHHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHH
Q psy597 274 KQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKE 353 (546)
Q Consensus 274 ~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~ 353 (546)
..++...-......-......+...|+.+|+.+-=..+ ..-.--.++..--.+....|+.++
T Consensus 142 -------------~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaP-----GTLvEEAALRRsi~la~~~g~~~r 203 (421)
T PRK12798 142 -------------YLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAP-----GTLVEEAALRRSLFIAAQLGDADK 203 (421)
T ss_pred -------------hcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCC-----chHHHHHHHHHhhHHHHhcCcHHH
Confidence 12223332233333344456789999999999876642 222223355555566788999999
Q ss_pred HHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC
Q psy597 354 AEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQG 433 (546)
Q Consensus 354 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g 433 (546)
+..+-.+.+..+. .+|.....+..++......++-.. ..-+...+.. -+.+.....|..++..-.-.|
T Consensus 204 f~~la~~Y~rRF~-----~S~YA~~F~~~F~~~~~~~~d~~~-~~~l~~~ls~------~d~~~q~~lYL~iAR~Ali~G 271 (421)
T PRK12798 204 FEALARNYLRRFR-----HSPYASQFAQRFVDLVVRLDDEIR-DARLVEILSF------MDPERQRELYLRIARAALIDG 271 (421)
T ss_pred HHHHHHHHHHHhc-----cCchHHHHHHHHHHHHHhcccccc-HHHHHHHHHh------cCchhHHHHHHHHHHHHHHcC
Confidence 9999998888873 347666666666666665553222 1224444443 234556778999999999999
Q ss_pred CHHHHHHHHHHHHHhhh
Q psy597 434 KYKEAEILYKQVLTRAH 450 (546)
Q Consensus 434 ~~~eA~~~~~~al~~~~ 450 (546)
+.+-|...-.+++.+..
T Consensus 272 k~~lA~~As~~A~~L~~ 288 (421)
T PRK12798 272 KTELARFASERALKLAD 288 (421)
T ss_pred cHHHHHHHHHHHHHhcc
Confidence 99999999999998863
No 394
>PF12854 PPR_1: PPR repeat
Probab=79.05 E-value=3.6 Score=24.95 Aligned_cols=29 Identities=24% Similarity=0.371 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy597 213 ARLRTLHNLVIQYASQGRYEVAVPLCKQA 241 (546)
Q Consensus 213 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 241 (546)
.+..+|..+...|.+.|+.++|..+|++.
T Consensus 5 Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 5 PDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45678999999999999999999999763
No 395
>KOG2422|consensus
Probab=78.86 E-value=90 Score=32.77 Aligned_cols=175 Identities=15% Similarity=0.099 Sum_probs=104.1
Q ss_pred hhcHHHHHHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC---------
Q psy597 306 QNKYKEAANLLNDALTIREKT----LGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKE--------- 372 (546)
Q Consensus 306 ~g~~~~A~~~~~~al~~~~~~----~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------- 372 (546)
...|.+|...|.-+.....-. +-.++|.....+..++.++...|+.+-|..+..+++=..+..+-+.
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 355778888887777664321 0124688899999999999999999999999999997776553321
Q ss_pred ----Ch---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHH-HHcCCHHHHHHHHH
Q psy597 373 ----HP---DVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSN-VAKTKNNLASCY-LKQGKYKEAEILYK 443 (546)
Q Consensus 373 ----~~---~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~-~~~~~~~La~~y-~~~g~~~eA~~~~~ 443 (546)
+| ....+++..-..+...|-+..|.++++-.+.+ +|. .+.+...+..+| ++..+|+=-+.+++
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsL--------dp~eDPl~~l~~ID~~ALrareYqwiI~~~~ 402 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSL--------DPSEDPLGILYLIDIYALRAREYQWIIELSN 402 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--------CCcCCchhHHHHHHHHHHHHHhHHHHHHHHH
Confidence 12 22333444455566789999999999888887 443 333444444444 35556665555555
Q ss_pred HHHHhhhhcccCcccCCChhhHHHHhhch---hhHHHHHHHHHHHHHH
Q psy597 444 QVLTRAHEREFGACDGDNKPIWQDRQKNK---AKNREKYYQRALEIYE 488 (546)
Q Consensus 444 ~al~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~Al~~~~ 488 (546)
..-....-...........++..+..... ...|...+.+|+..+.
T Consensus 403 ~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 403 EPENMNKLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred HHHhhccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 44221110111111111122223333333 4566777788876644
No 396
>KOG4196|consensus
Probab=78.53 E-value=7 Score=31.72 Aligned_cols=39 Identities=36% Similarity=0.492 Sum_probs=31.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHH
Q psy597 93 LQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSS 131 (546)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~ 131 (546)
-..+|.++..|+.||..|.+||+-++-|+.....+...+
T Consensus 76 k~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l 114 (135)
T KOG4196|consen 76 KHELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEAL 114 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788899999999999999988888887766665443
No 397
>PF12854 PPR_1: PPR repeat
Probab=78.52 E-value=4.4 Score=24.56 Aligned_cols=27 Identities=33% Similarity=0.379 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy597 418 VAKTKNNLASCYLKQGKYKEAEILYKQ 444 (546)
Q Consensus 418 ~~~~~~~La~~y~~~g~~~eA~~~~~~ 444 (546)
...+|+.|...|.+.|+.++|.+++++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 456889999999999999999999876
No 398
>KOG0963|consensus
Probab=78.49 E-value=95 Score=32.82 Aligned_cols=116 Identities=25% Similarity=0.243 Sum_probs=78.6
Q ss_pred HhhhhhHHHHHHHHhHhhhHHHHHhhhhhccC-----CCchHHHHHHHHhhHHHHHcCcCHHHHHHHHHhhhhhHHHHHH
Q psy597 27 IMTNTKTVQQGLEALKNEHTSILNSLSETQHG-----GPVEEEKRNMVKNSLEIIELGLNEAQVMTALAGHLQNVEAEKQ 101 (546)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (546)
|++.....++.+..|..|-..+.+.+....+. .+..+ +..++-.+.|.+. +++.+.+-+|-.+..-+..
T Consensus 240 im~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~-~~~~~L~~kd~~i-----~~L~~di~~~~~S~~~e~e 313 (629)
T KOG0963|consen 240 IMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDID-ALGSVLNQKDSEI-----AQLSNDIERLEASLVEERE 313 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchH-HHHHHHhHHHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 56777778888888888888888877766543 12222 3333334455543 3455555555555555666
Q ss_pred HHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhh
Q psy597 102 KLRTQVRRLVQENAWLRDELANTQQKLQSSEQANSQLEEEKKHLEFMSSIR 152 (546)
Q Consensus 102 ~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~~~~~qlee~~~~l~~~~~l~ 152 (546)
+...||..|..++.-++.+|..+..+|+.- ..|++.++.+..+..+.
T Consensus 314 ~~~~qI~~le~~l~~~~~~leel~~kL~~~----sDYeeIK~ELsiLk~ie 360 (629)
T KOG0963|consen 314 KHKAQISALEKELKAKISELEELKEKLNSR----SDYEEIKKELSILKAIE 360 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----ccHHHHHHHHHHHHHhh
Confidence 777888888888888888888777777544 78888888888777776
No 399
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=78.47 E-value=61 Score=31.92 Aligned_cols=34 Identities=15% Similarity=0.242 Sum_probs=12.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhcHHHHHHHH
Q psy597 92 HLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQ 125 (546)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~ 125 (546)
-|..+..+....+..+..+..+-.++...+....
T Consensus 217 eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~ 250 (325)
T PF08317_consen 217 ELAEQKEEIEAKKKELAELQEELEELEEKIEELE 250 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333
No 400
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=78.23 E-value=83 Score=32.03 Aligned_cols=143 Identities=13% Similarity=0.037 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHH
Q psy597 215 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVAT 294 (546)
Q Consensus 215 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 294 (546)
.-.+...|..+..++++.+|...|.+..+......-.+.+-....+..-+.+.+..+....... .+.+ ..+..+.
T Consensus 6 ~~llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~--~l~~---~~~~s~~ 80 (549)
T PF07079_consen 6 QYLLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLM--ELRQ---QFGKSAY 80 (549)
T ss_pred HHHHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHH--HHHH---hcCCchH
Confidence 3456678889999999999999999988765544322221111111112233333333322211 1111 2234455
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHH--------HH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 295 MLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAA--------VA--ATLNNLAVLYGKRGKYKEAEPLCKRALEI 364 (546)
Q Consensus 295 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~--------~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~ 364 (546)
.....|...+..+.|.+|+..+..--...... .++. .. ..-...|.++...|++.++...+++.+..
T Consensus 81 l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~---~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 81 LPLFKALVAYKQKEYRKALQALSVWKEQIKGT---ESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER 157 (549)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhhccc---ccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 66778899999999999998876554432221 1111 11 11234678899999999999999998876
Q ss_pred H
Q psy597 365 R 365 (546)
Q Consensus 365 ~ 365 (546)
.
T Consensus 158 l 158 (549)
T PF07079_consen 158 L 158 (549)
T ss_pred H
Confidence 5
No 401
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=78.21 E-value=53 Score=33.02 Aligned_cols=82 Identities=23% Similarity=0.346 Sum_probs=58.6
Q ss_pred HHHHHHHHhhHHHHHcCcCHHHHHHHHHhhhhhHHHHH---HHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHhh--h
Q psy597 63 EEKRNMVKNSLEIIELGLNEAQVMTALAGHLQNVEAEK---QKLRTQVRRLVQENAWLRDELANTQQKLQSSEQANS--Q 137 (546)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~~~~~--q 137 (546)
.+....+..++|.+. .++...+.-+.++++.|+ ++|..||+.+.+-. .+|+.++.|.|...+..++ -
T Consensus 225 k~~~~~L~~~~e~Lk-----~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elH---q~Ei~~LKqeLa~~EEK~~Yqs 296 (395)
T PF10267_consen 225 KESQSRLEESIEKLK-----EQYQREYQFILEALQEERYRYERLEEQLNDLTELH---QNEIYNLKQELASMEEKMAYQS 296 (395)
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhHHHHHHHHH
Confidence 455566777777774 478888889999999885 47889999998876 4777777777777777665 4
Q ss_pred HHHHHHHHHHHHhhh
Q psy597 138 LEEEKKHLEFMSSIR 152 (546)
Q Consensus 138 lee~~~~l~~~~~l~ 152 (546)
+|++++-.+.|.+..
T Consensus 297 ~eRaRdi~E~~Es~q 311 (395)
T PF10267_consen 297 YERARDIWEVMESCQ 311 (395)
T ss_pred HHHHhHHHHHHHHHH
Confidence 445555555665543
No 402
>KOG3850|consensus
Probab=77.83 E-value=70 Score=31.45 Aligned_cols=93 Identities=23% Similarity=0.330 Sum_probs=65.1
Q ss_pred HHHhHhhhHHHHHhhhhhccCCCchHHHHHHHHhhHHHHHcCcCHHHHHHHHHhhhhhHHHHH---HHHHHHHHHHHHhh
Q psy597 38 LEALKNEHTSILNSLSETQHGGPVEEEKRNMVKNSLEIIELGLNEAQVMTALAGHLQNVEAEK---QKLRTQVRRLVQEN 114 (546)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 114 (546)
|.++..|-+.|..+. ..|.+|.|.+. .+....+.-..++++.|+ .+|..|++.+.+=.
T Consensus 262 l~aileeL~eIk~~q--------------~~Leesye~Lk-----e~~krdy~fi~etLQEERyR~erLEEqLNdlteLq 322 (455)
T KOG3850|consen 262 LDAILEELREIKETQ--------------ALLEESYERLK-----EQIKRDYKFIAETLQEERYRYERLEEQLNDLTELQ 322 (455)
T ss_pred HHHHHHHHHHHHHHH--------------HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 566666666665543 35667777774 477788888888998885 58889999887655
Q ss_pred hhcHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHhhh
Q psy597 115 AWLRDELANTQQKLQSSEQANS--QLEEEKKHLEFMSSIR 152 (546)
Q Consensus 115 ~~l~~~la~~~~~l~~~~~~~~--qlee~~~~l~~~~~l~ 152 (546)
..|.+++.|.|...+..++ -+|+++.-.+.+.+..
T Consensus 323 ---QnEi~nLKqElasmeervaYQsyERaRdIqEalEscq 359 (455)
T KOG3850|consen 323 ---QNEIANLKQELASMEERVAYQSYERARDIQEALESCQ 359 (455)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577777777777777766 5666666665555543
No 403
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=77.62 E-value=5.8 Score=40.00 Aligned_cols=85 Identities=13% Similarity=0.066 Sum_probs=56.2
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q psy597 347 KRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLA 426 (546)
Q Consensus 347 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La 426 (546)
..|+.-.|-.-...++... |..+......+.+...+|+|+.|...+..+-.+.. ....+...+-
T Consensus 301 ~~gd~~aas~~~~~~lr~~--------~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~--------s~~~~~~~~~ 364 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQ--------QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIG--------TTDSTLRCRL 364 (831)
T ss_pred hccCHHHHHHHHHHHHHhC--------CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhc--------CCchHHHHHH
Confidence 4577777777777777664 33333444567788889999998888776655421 1122344455
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q psy597 427 SCYLKQGKYKEAEILYKQVLT 447 (546)
Q Consensus 427 ~~y~~~g~~~eA~~~~~~al~ 447 (546)
.....+|++++|.....-.+.
T Consensus 365 r~~~~l~r~~~a~s~a~~~l~ 385 (831)
T PRK15180 365 RSLHGLARWREALSTAEMMLS 385 (831)
T ss_pred HhhhchhhHHHHHHHHHHHhc
Confidence 666788899999887776664
No 404
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=77.50 E-value=68 Score=30.63 Aligned_cols=94 Identities=16% Similarity=0.246 Sum_probs=78.1
Q ss_pred CCchHHHHHHHHhhHHHHHcCcCHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHhhhH
Q psy597 59 GPVEEEKRNMVKNSLEIIELGLNEAQVMTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSSEQANSQL 138 (546)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~~~~~ql 138 (546)
.+|+.++-..|-+-+..|..-+..++.+.-...++..+-++..+++...+.+.....-|.++....+..+-.+.+....+
T Consensus 126 ~~L~~e~E~~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~ 205 (294)
T COG1340 126 SVLTPEEERELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADEL 205 (294)
T ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666677777877788889999999999999999999999999999999999999999999999999998887
Q ss_pred HHHHH--HHHHHHhhh
Q psy597 139 EEEKK--HLEFMSSIR 152 (546)
Q Consensus 139 ee~~~--~l~~~~~l~ 152 (546)
-+..+ |-.|..-..
T Consensus 206 Rkeade~he~~ve~~~ 221 (294)
T COG1340 206 RKEADELHEEFVELSK 221 (294)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 77666 444544444
No 405
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=76.84 E-value=59 Score=29.55 Aligned_cols=109 Identities=31% Similarity=0.423 Sum_probs=55.4
Q ss_pred hhhhHHHHHHHHhHhhhHHHHHhhhhhccCCCchHHHHHHHHhh--HHHHHcCcCHHHHHHHHHhhhhhHHHH-HHHHHH
Q psy597 29 TNTKTVQQGLEALKNEHTSILNSLSETQHGGPVEEEKRNMVKNS--LEIIELGLNEAQVMTALAGHLQNVEAE-KQKLRT 105 (546)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 105 (546)
...+++..-+...+.+|..-++.+..- +.+||..+=+.. +..+.+|- .+-..|....++++.. ++.+..
T Consensus 85 ~eI~~Le~e~~~~~~e~~~~l~~~~~q-----fl~EK~~LEke~~e~~i~~l~e---~a~~el~~k~~ale~~A~~~l~e 156 (206)
T PF14988_consen 85 REIQTLEEELEKMRAEHAEKLQEAESQ-----FLQEKARLEKEASELKILQLGE---RAHKELKKKAQALELAAKKSLDE 156 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhhHHHhHH---HhhHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555556666666555443 346666654443 34444442 1222222233333322 444555
Q ss_pred HHHHHHHhhhhcHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q psy597 106 QVRRLVQENAWLRDELANTQQKLQSSEQANSQLEEEKKHL 145 (546)
Q Consensus 106 ~~~~~~~~~~~l~~~la~~~~~l~~~~~~~~qlee~~~~l 145 (546)
-.+.++.||.+|+.+|..+-+.....+....+|++.+..|
T Consensus 157 ~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L 196 (206)
T PF14988_consen 157 FTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQL 196 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666666665555666666666555544
No 406
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=76.66 E-value=42 Score=27.75 Aligned_cols=86 Identities=17% Similarity=0.138 Sum_probs=57.9
Q ss_pred CCHHHHHHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q psy597 349 GKYKEAEPLCKRALEIREKV-LGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLAS 427 (546)
Q Consensus 349 g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~ 427 (546)
|.-..-..++++++..+... .-.+++....++...+.... .+...|...... +-....+..|..-|.
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~------~~~~if~~l~~~------~IG~~~A~fY~~wA~ 107 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS------DPREIFKFLYSK------GIGTKLALFYEEWAE 107 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS------HHHHHHHHHHHH------TTSTTBHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc------CHHHHHHHHHHc------CccHHHHHHHHHHHH
Confidence 45555667888888776332 11335666666666665332 777777766554 224556778889999
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q psy597 428 CYLKQGKYKEAEILYKQVL 446 (546)
Q Consensus 428 ~y~~~g~~~eA~~~~~~al 446 (546)
.+...|++++|.+.|+.++
T Consensus 108 ~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 108 FLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHTT-HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHhhC
Confidence 9999999999999998764
No 407
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=76.63 E-value=49 Score=28.52 Aligned_cols=119 Identities=14% Similarity=0.118 Sum_probs=83.6
Q ss_pred hHHHHHHHHhHhhhHHHHHhhhhhccCCCchHHHHHHHHhhHHHHHcCc--CHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q psy597 32 KTVQQGLEALKNEHTSILNSLSETQHGGPVEEEKRNMVKNSLEIIELGL--NEAQVMTALAGHLQNVEAEKQKLRTQVRR 109 (546)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (546)
..+.-.|.+++.++..+...+..............+.....|+....|. .-.+.++++=.+..-+..+.+.+.+++..
T Consensus 18 ~rL~~~L~~~r~al~~~~a~~~~~~a~v~~~~~~l~~~~~ri~~m~~gg~~f~i~~~~~~~~~r~~l~~~~~~~e~~~a~ 97 (158)
T PF09486_consen 18 RRLRARLAAQRRALAAAEAELAEQQAEVEAARQRLRAHDARIDAMMTGGAPFSIDEYLALRRYRDVLEERVRAAEAELAA 97 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456678888888888888876653211122344455566676666642 23566666667777777788888888888
Q ss_pred HHHhhhhcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q psy597 110 LVQENAWLRDELANTQQKLQSSEQANSQLEEEKKHLEFMSS 150 (546)
Q Consensus 110 ~~~~~~~l~~~la~~~~~l~~~~~~~~qlee~~~~l~~~~~ 150 (546)
+.+.-.--.++++.+.+.+......+.-+.+.+..+....+
T Consensus 98 l~~~l~~~~~~ia~~~raIarn~a~id~~~er~~~l~r~~e 138 (158)
T PF09486_consen 98 LRQALRAAEDEIAATRRAIARNDARIDVCRERIDRLRRAAE 138 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 88888888888899999998888888888887776644443
No 408
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=76.35 E-value=67 Score=33.14 Aligned_cols=83 Identities=17% Similarity=0.134 Sum_probs=50.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHH----------------HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy597 380 LNNLALLCQNQSKYEEVERYY----------------QRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYK 443 (546)
Q Consensus 380 ~~~la~~~~~~g~~~eA~~~~----------------~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~ 443 (546)
...++..+..+|-++.|+.+. +.|+++++ .......|..||...+.+|+++-|..+|.
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~------~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~ 371 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAK------ELDDPEKWKQLGDEALRQGNIELAEECYQ 371 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCC------CCSTHHHHHHHHHHHHHTTBHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHH------hcCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455666666677776666552 22333311 22345589999999999999999999998
Q ss_pred HHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHH
Q psy597 444 QVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYY 480 (546)
Q Consensus 444 ~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 480 (546)
++-.. ..+...+...|+.+.-....
T Consensus 372 k~~d~------------~~L~lLy~~~g~~~~L~kl~ 396 (443)
T PF04053_consen 372 KAKDF------------SGLLLLYSSTGDREKLSKLA 396 (443)
T ss_dssp HCT-H------------HHHHHHHHHCT-HHHHHHHH
T ss_pred hhcCc------------cccHHHHHHhCCHHHHHHHH
Confidence 86542 23445566666654433333
No 409
>PF10858 DUF2659: Protein of unknown function (DUF2659); InterPro: IPR022588 This bacterial family of proteins has no known function.
Probab=76.29 E-value=50 Score=28.48 Aligned_cols=130 Identities=16% Similarity=0.108 Sum_probs=85.2
Q ss_pred hcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q psy597 307 NKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALL 386 (546)
Q Consensus 307 g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 386 (546)
++-+-|...++..+..+ +..-.--+....-..-...|.|.+|..++.+.++.- ...+...+|..+++|
T Consensus 71 ~N~eLa~~tLEnLvt~s------nTKikEiA~leqva~kis~~~~~eaK~LlnkIi~nk------~YSeistsYaRi~wc 138 (220)
T PF10858_consen 71 NNSELAFNTLENLVTNS------NTKIKEIAALEQVAIKISEKKYSEAKQLLNKIIENK------EYSEISTSYARINWC 138 (220)
T ss_pred CcHHHHHHHHHHHHHcc------chHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhh------hHHHHHHHHHHHHHH
Confidence 55566777777755442 222223344555566678899999999999999873 346677888899988
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 387 CQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 387 ~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
+....+-.--+.--.+..+...-...+..|..+.+-...|..-.+.|...+|+..++..+..
T Consensus 139 ~~vidD~nl~i~dk~kL~kyL~yfdd~~kPFWatAtI~kaiwdik~nm~~~aeknL~~l~~S 200 (220)
T PF10858_consen 139 CMVIDDQNLNIQDKEKLIKYLNYFDDEKKPFWATATIIKAIWDIKNNMKNQAEKNLKNLLAS 200 (220)
T ss_pred HheecccccChhhHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 88665433323333333333333334556666666666777778899999999999988763
No 410
>PF11414 Suppressor_APC: Adenomatous polyposis coli tumour suppressor protein; PDB: 1M5I_A.
Probab=76.21 E-value=8.7 Score=29.06 Aligned_cols=44 Identities=18% Similarity=0.354 Sum_probs=37.2
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHH
Q psy597 88 ALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSS 131 (546)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~ 131 (546)
.+..|+..+|.|+.-|-.-+..+-.+-.|+.+.|.+.+.++...
T Consensus 4 ~~lk~mkeLEqEkd~LLqgLe~~Er~r~Wy~~qL~~vq~rq~~L 47 (84)
T PF11414_consen 4 NMLKRMKELEQEKDVLLQGLEMEERERDWYQQQLQSVQERQRHL 47 (84)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35678999999999999999999999999999999999876533
No 411
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=76.20 E-value=95 Score=31.65 Aligned_cols=57 Identities=23% Similarity=0.303 Sum_probs=46.9
Q ss_pred HHHHH--HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy597 337 TLNNL--AVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQR 402 (546)
Q Consensus 337 ~~~~l--a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~ 402 (546)
.-+.| |..++..|+|.++.-+..-..++. | ...++..+|.++....+|++|..++..
T Consensus 462 ian~LaDAEyLysqgey~kc~~ys~WL~~ia--------P-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 462 IANFLADAEYLYSQGEYHKCYLYSSWLTKIA--------P-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhC--------C-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 34444 455778999999999988888884 6 788999999999999999999988864
No 412
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=76.19 E-value=72 Score=30.23 Aligned_cols=217 Identities=15% Similarity=0.067 Sum_probs=115.4
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHH-hhHHHHHhhhhh-hHHHHHHHHHHHHhccCCCC
Q psy597 211 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAE-TLEDCALRSRKE-SYDIVKQAKVAQILGSGGHD 288 (546)
Q Consensus 211 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~-~~~~~~l~~~~~-~~~~~~~~~~~~~l~~~~~~ 288 (546)
..+..+.++.-+..+.+.|++..|.++..-.++.+.+.....+... .-....+...+. ..........+......+..
T Consensus 6 y~eAidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~ 85 (260)
T PF04190_consen 6 YDEAIDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSY 85 (260)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-
T ss_pred HHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCC
Confidence 4566788888899999999999999999888888887664433332 222222222222 22223333322222244556
Q ss_pred ChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH-----H---HHHhcCCCCHHHHHHHHHHH-HHHHHcCCHHHHHHHHH
Q psy597 289 HPDVATMLNILALVYRDQNKYKEAANLLNDALT-----I---REKTLGENHAAVAATLNNLA-VLYGKRGKYKEAEPLCK 359 (546)
Q Consensus 289 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-----~---~~~~~g~~~~~~~~~~~~la-~~~~~~g~~~~A~~~~~ 359 (546)
....+..+..+|..|+..|++.+|..+|-.+-+ . .........+.....+...| ..|...|+...|...+.
T Consensus 86 ~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~ 165 (260)
T PF04190_consen 86 KFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFD 165 (260)
T ss_dssp TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 667788999999999999999999988843211 0 00000011122233344333 45778899999998887
Q ss_pred HHHHHHHHh----c------CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q psy597 360 RALEIREKV----L------GKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCY 429 (546)
Q Consensus 360 ~al~~~~~~----~------~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y 429 (546)
.-.+..... . ....|. ......|-.+ ...++ ...|....+.|+..+. .+|.....+..+|..|
T Consensus 166 ~f~~~~~~~~p~~~~~~~~~~~~~Pl-lnF~~lLl~t-~e~~~----~~~F~~L~~~Y~~~L~-rd~~~~~~L~~IG~~y 238 (260)
T PF04190_consen 166 TFTSKLIESHPKLENSDIEYPPSYPL-LNFLQLLLLT-CERDN----LPLFKKLCEKYKPSLK-RDPSFKEYLDKIGQLY 238 (260)
T ss_dssp HHHHHHHHH---EEEEEEEEESS-HH-HHHHHHHHHH-HHHT-----HHHHHHHHHHTHH----HHHHTHHHHHHHHHHH
T ss_pred HHHHHHhccCcchhccccCCCCCCch-HHHHHHHHHH-HhcCc----HHHHHHHHHHhCcccc-ccHHHHHHHHHHHHHH
Confidence 777663222 0 112222 2222222222 23333 4566666666655432 2566777888888888
Q ss_pred HHcCC
Q psy597 430 LKQGK 434 (546)
Q Consensus 430 ~~~g~ 434 (546)
+....
T Consensus 239 Fgi~~ 243 (260)
T PF04190_consen 239 FGIQP 243 (260)
T ss_dssp H---S
T ss_pred CCCCC
Confidence 87543
No 413
>KOG4563|consensus
Probab=76.07 E-value=9.9 Score=37.05 Aligned_cols=67 Identities=13% Similarity=0.001 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy597 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQ 401 (546)
Q Consensus 335 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~ 401 (546)
..-+...|.-.+.++++++|...|..|..+....+|..+...+.+++.+|..++..++++..+-.+-
T Consensus 41 ~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~na 107 (400)
T KOG4563|consen 41 LEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLGNA 107 (400)
T ss_pred HHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4456778899999999999999999999999999999999999999999999999888776654443
No 414
>KOG4807|consensus
Probab=74.89 E-value=23 Score=34.57 Aligned_cols=18 Identities=33% Similarity=0.501 Sum_probs=9.1
Q ss_pred hhhHHHHHHHHhHhhhHH
Q psy597 30 NTKTVQQGLEALKNEHTS 47 (546)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~ 47 (546)
.|..++-.+||.|+-|.-
T Consensus 379 ETAATiSAIEAMKnAhrE 396 (593)
T KOG4807|consen 379 ETAATISAIEAMKNAHRE 396 (593)
T ss_pred hhhhhhHHHHHHHHHHHH
Confidence 344455555555555543
No 415
>KOG2114|consensus
Probab=74.87 E-value=91 Score=34.25 Aligned_cols=43 Identities=9% Similarity=0.012 Sum_probs=32.9
Q ss_pred hhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy597 204 QVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLE 246 (546)
Q Consensus 204 ~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 246 (546)
......+...........|..++..|++++|...|-+++...+
T Consensus 357 Ak~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le 399 (933)
T KOG2114|consen 357 AKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLE 399 (933)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCC
Confidence 3334444455667788899999999999999999999887543
No 416
>KOG4563|consensus
Probab=74.61 E-value=8.7 Score=37.44 Aligned_cols=67 Identities=15% Similarity=0.016 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy597 293 ATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCK 359 (546)
Q Consensus 293 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 359 (546)
..-+...|.-.+.++++++|...|..|..++...+|..+.....+++..|..++..+++..++-.+-
T Consensus 41 ~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~na 107 (400)
T KOG4563|consen 41 LEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLGNA 107 (400)
T ss_pred HHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4457778999999999999999999999999999999999999999999999999888877665443
No 417
>KOG1310|consensus
Probab=74.56 E-value=20 Score=36.88 Aligned_cols=104 Identities=16% Similarity=0.095 Sum_probs=72.3
Q ss_pred CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCC
Q psy597 209 YEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHD 288 (546)
Q Consensus 209 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 288 (546)
.+.|..++-...-|.-.+..+....|+..|.+++. .
T Consensus 368 ~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q--------------------------------------------~ 403 (758)
T KOG1310|consen 368 YELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQ--------------------------------------------Y 403 (758)
T ss_pred hhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhh--------------------------------------------h
Confidence 34455666666666666666667777777777765 3
Q ss_pred ChhHHHHHHHHHHHHHHhh---cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 289 HPDVATMLNILALVYRDQN---KYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 364 (546)
Q Consensus 289 ~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 364 (546)
.|.....+.+.+.++...+ +.-.|+.-...|+.+ +|....+++.|+.++...+++.+|+.+...+...
T Consensus 404 ~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrl--------n~s~~kah~~la~aL~el~r~~eal~~~~alq~~ 474 (758)
T KOG1310|consen 404 VPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRL--------NPSIQKAHFRLARALNELTRYLEALSCHWALQMS 474 (758)
T ss_pred ccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccC--------ChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhc
Confidence 4556667777777777654 444555555555554 6777889999999999999999999988766544
No 418
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=74.20 E-value=20 Score=29.61 Aligned_cols=63 Identities=13% Similarity=0.162 Sum_probs=43.5
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRAL 362 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 362 (546)
+++....+|...+.... .+.+.|..+... +-....+..|...|..+...|++++|.++|+.++
T Consensus 64 nD~RylkiWi~ya~~~~------~~~~if~~l~~~------~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 64 NDERYLKIWIKYADLSS------DPREIFKFLYSK------GIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp T-HHHHHHHHHHHTTBS------HHHHHHHHHHHH------TTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcc------CHHHHHHHHHHc------CccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 55666666666655332 677777766543 2234457788899999999999999999998875
No 419
>smart00338 BRLZ basic region leucin zipper.
Probab=73.49 E-value=10 Score=27.02 Aligned_cols=37 Identities=30% Similarity=0.514 Sum_probs=22.3
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhcHHHH
Q psy597 85 VMTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDEL 121 (546)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 121 (546)
-+..|-..++.++.+.+.|+.+|..|..++..|++++
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555566666666666666666666666655544
No 420
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=72.81 E-value=25 Score=24.19 Aligned_cols=44 Identities=16% Similarity=0.308 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHhh
Q psy597 93 LQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSSEQANS 136 (546)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~~~~~ 136 (546)
+..+..++|.|..+|..|.++..-++.++...+.....+.+.+.
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlD 48 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLD 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 421
>KOG3024|consensus
Probab=72.67 E-value=89 Score=29.68 Aligned_cols=131 Identities=23% Similarity=0.185 Sum_probs=69.8
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
+.-....++..+..-|..+..++.|++......... .+.++...|..+.-..++..++
T Consensus 21 d~Yeahqm~RTl~fR~~~~K~~~~aieL~~~ga~~f----------------------fk~~Q~~saaDl~~~~le~~ek 78 (312)
T KOG3024|consen 21 DYYEAHQMYRTLVFRYTRQKAHEDAIELLYDGALCF----------------------FKLKQRGSAADLLVLVLEVLEK 78 (312)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH----------------------HHhccCCCchhHHHHHHHHHHH
Confidence 344455666677777777777777776655444332 2222222222222222222221
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy597 368 VLGKEHPDVAKQLNNLALLCQNQSKYEE-VERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQ 444 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~~~g~~~e-A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~ 444 (546)
. ...+...-..+++.+....+.-+. =..+.+++++..... +......+..+..+|..++.-+++.+|..+|-.
T Consensus 79 a---~~ad~~~~~anl~~ll~e~~~~eper~~~v~raikWS~~~-~~~k~G~p~lH~~la~~l~~e~~~~~a~~HFll 152 (312)
T KOG3024|consen 79 A---EVADSLLKVANLAELLGEADPSEPERKTFVRRAIKWSKEF-GEGKYGHPELHALLADKLWTEDNVEEARRHFLL 152 (312)
T ss_pred H---HhhHhHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHHhcccHHHHHhHhhh
Confidence 1 001111122345555544443333 344566677665443 222345667788899999999999999988854
No 422
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=72.20 E-value=1.3e+02 Score=31.72 Aligned_cols=54 Identities=30% Similarity=0.396 Sum_probs=40.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy597 91 GHLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSSEQANSQLEEEKKH 144 (546)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~~~~~qlee~~~~ 144 (546)
..|.....++.....+..++..++.-|+++|..++.+++.+++.+.-+.+++..
T Consensus 262 ~rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~ 315 (546)
T PF07888_consen 262 QRLKETVVQLKQEETQAQQLQQENEALKEQLRSAQEQLQASQQEAELLRKELSD 315 (546)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444445556788888999999999999999999999988888654
No 423
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=72.00 E-value=69 Score=29.15 Aligned_cols=49 Identities=20% Similarity=0.457 Sum_probs=33.3
Q ss_pred HHHHhhhhhHHHH--HHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q psy597 87 TALAGHLQNVEAE--KQKLRTQVRRLVQENAWLRDELANTQQKLQSSEQANSQLEEEKKHL 145 (546)
Q Consensus 87 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~~~~~qlee~~~~l 145 (546)
..|-.-|..++.+ +.+++..+..++++| ++.+++..+++.+++...+.+
T Consensus 100 ~~Lq~~Lk~V~tde~k~~~~~ei~k~r~e~----------~~ml~evK~~~E~y~k~~k~~ 150 (230)
T PF03904_consen 100 DILQDELKDVDTDELKNIAQNEIKKVREEN----------KSMLQEVKQSHEKYQKRQKSM 150 (230)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555554 445666677777777 888888888999988887753
No 424
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=71.83 E-value=24 Score=28.15 Aligned_cols=52 Identities=29% Similarity=0.394 Sum_probs=40.9
Q ss_pred HHhhHHHHHcCcCHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHH
Q psy597 69 VKNSLEIIELGLNEAQVMTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQ 126 (546)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~ 126 (546)
|...+..++ +-+..|...+..+..+...|-....+|.-||.-||+.|....+
T Consensus 6 l~~~l~~le------~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 6 LFDRLDQLE------QQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445556664 3455678888889999999999999999999999999987765
No 425
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=71.39 E-value=24 Score=26.06 Aligned_cols=36 Identities=17% Similarity=0.300 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q psy597 376 VAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKL 411 (546)
Q Consensus 376 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~ 411 (546)
.+..+...|.-+-..|++++|+.+|+++++.+.+..
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~ 40 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIV 40 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 455566777888899999999999999999877653
No 426
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=71.30 E-value=41 Score=27.50 Aligned_cols=56 Identities=32% Similarity=0.439 Sum_probs=36.5
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHhhhhc----------HHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy597 88 ALAGHLQNVEAEKQKLRTQVRRLVQENAWL----------RDELANTQQKLQSSEQANSQLEEEKK 143 (546)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----------~~~la~~~~~l~~~~~~~~qlee~~~ 143 (546)
.+-.-+..+++++..++..+-+|..+|.-+ +.++..++.+....-+.+|.-.|...
T Consensus 34 ~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~ve 99 (120)
T PF12325_consen 34 SLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVE 99 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 456667778888888888888888777433 45555555555555555555444444
No 427
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=70.83 E-value=50 Score=34.61 Aligned_cols=66 Identities=14% Similarity=0.036 Sum_probs=52.1
Q ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy597 370 GKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQ 444 (546)
Q Consensus 370 ~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~ 444 (546)
++.+|....... +...+...++...+.-.+..++.. +|..+.+..+|+......|..-.+...+.+
T Consensus 61 ~~~~~~llla~~-lsi~~~~~~~~~~~~~~~~~~l~~--------~~~~~~~~~~L~~ale~~~~~~~~~~~~~~ 126 (620)
T COG3914 61 NDVNPELLLAAF-LSILLAPLADSTLAFLAKRIPLSV--------NPENCPAVQNLAAALELDGLQFLALADISE 126 (620)
T ss_pred CCCCHHHHHHHH-HHhhccccccchhHHHHHhhhHhc--------CcccchHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 355666666666 888888899998888888888887 888899999999998887777776666555
No 428
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=70.71 E-value=36 Score=24.32 Aligned_cols=41 Identities=27% Similarity=0.337 Sum_probs=26.2
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHH
Q psy597 88 ALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKL 128 (546)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~l 128 (546)
.|...-+.+..|...||.|+..+..|+.-|.+......+++
T Consensus 11 ~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rv 51 (65)
T TIGR02449 11 HLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKV 51 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777777777777777777755555554444444
No 429
>KOG4014|consensus
Probab=70.69 E-value=76 Score=28.07 Aligned_cols=63 Identities=13% Similarity=0.085 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHH-----hhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc-----CC--HHHHHHHHH
Q psy597 292 VATMLNILALVYRD-----QNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKR-----GK--YKEAEPLCK 359 (546)
Q Consensus 292 ~~~~~~~la~~~~~-----~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~-----g~--~~~A~~~~~ 359 (546)
.+...+.+|..+.. .+++..|++.+..+.+. ..+.+..++|.+...- ++ ..+|++++.
T Consensus 67 y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~----------n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~t 136 (248)
T KOG4014|consen 67 YPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA----------NIPQACRYLGLLHWNGEKDRKADPDSEKAERYMT 136 (248)
T ss_pred CcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc----------CCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHH
Confidence 34455666655543 45788888888888753 2245667777776643 23 678888888
Q ss_pred HHHHH
Q psy597 360 RALEI 364 (546)
Q Consensus 360 ~al~~ 364 (546)
++-++
T Consensus 137 raCdl 141 (248)
T KOG4014|consen 137 RACDL 141 (248)
T ss_pred HhccC
Confidence 87765
No 430
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=70.67 E-value=99 Score=29.39 Aligned_cols=144 Identities=14% Similarity=0.195 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhH
Q psy597 213 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDV 292 (546)
Q Consensus 213 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 292 (546)
.....+-.-+.......+|..|+..|+++++.+......-+. .......
T Consensus 33 ~a~~lLe~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~-------------------------------~~~~~ev 81 (309)
T PF07163_consen 33 PAVSLLEEAADLLVVHRDFQAALETCERGLQSLASDADAEEP-------------------------------AGSSLEV 81 (309)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc-------------------------------ccchhhh
Confidence 334566667788888999999999999999876332200000 0011122
Q ss_pred HHHHHHHH-HHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 293 ATMLNILA-LVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 371 (546)
Q Consensus 293 ~~~~~~la-~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 371 (546)
-..+..+| .++..++++.+.+...-+-...-++. + +.++-.--.+|.+.|++....+.-..-+.. +
T Consensus 82 K~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEkl----P---pkIleLCILLysKv~Ep~amlev~~~WL~~------p 148 (309)
T PF07163_consen 82 KCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKL----P---PKILELCILLYSKVQEPAAMLEVASAWLQD------P 148 (309)
T ss_pred hhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccC----C---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhC------c
Confidence 23334444 45677888888877766555443322 2 344555567788999999888877766654 2
Q ss_pred CChHHHHHHHHHHH-----HHHHcCCHHHHHHHHH
Q psy597 372 EHPDVAKQLNNLAL-----LCQNQSKYEEVERYYQ 401 (546)
Q Consensus 372 ~~~~~~~~~~~la~-----~~~~~g~~~eA~~~~~ 401 (546)
++..... |..++. ++.=.|.+.+|+++..
T Consensus 149 ~Nq~lp~-y~~vaELyLl~VLlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 149 SNQSLPE-YGTVAELYLLHVLLPLGHFSEAEELVV 182 (309)
T ss_pred ccCCchh-hHHHHHHHHHHHHhccccHHHHHHHHh
Confidence 2111111 444444 4455899999998874
No 431
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=70.15 E-value=86 Score=32.82 Aligned_cols=56 Identities=14% Similarity=0.173 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 351 YKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYEL 409 (546)
Q Consensus 351 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~ 409 (546)
-..++.+|.+|+...+..+++.| ..-|..+|-.|++.++|.+|+.++-+|-+..+.
T Consensus 295 r~~~~~l~~~AI~sa~~~Y~n~H---vYPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~ 350 (618)
T PF05053_consen 295 RPTPLELFNEAISSARTYYNNHH---VYPYTYLGGYYYRHKRYREALRSWAEAADVIRK 350 (618)
T ss_dssp S--HHHHHHHHHHHHHHHCTT-----SHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHhcCCc---cccceehhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999988876544 456778999999999999999999888777544
No 432
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=69.61 E-value=18 Score=22.33 Aligned_cols=29 Identities=24% Similarity=0.356 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH--HHHHh
Q psy597 420 KTKNNLASCYLKQGKYKEAEILYK--QVLTR 448 (546)
Q Consensus 420 ~~~~~La~~y~~~g~~~eA~~~~~--~al~~ 448 (546)
..+..+|-.+..+|++++|+..|. -+..+
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~l 32 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCAL 32 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 346778999999999999999944 55443
No 433
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=69.08 E-value=91 Score=30.66 Aligned_cols=34 Identities=21% Similarity=0.374 Sum_probs=14.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhcHHHHHHHH
Q psy597 92 HLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQ 125 (546)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~ 125 (546)
-+..++.+++.++..++.+..+-.-+..+++.++
T Consensus 231 ~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 231 ELAELQEELEELEEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444433
No 434
>KOG3807|consensus
Probab=69.06 E-value=1.2e+02 Score=29.57 Aligned_cols=122 Identities=16% Similarity=0.035 Sum_probs=64.7
Q ss_pred hhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhcc
Q psy597 205 VNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGS 284 (546)
Q Consensus 205 ~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~ 284 (546)
-.+..-+|.-+.+|..++.-- .--..+|..++++|++..+........ ........++ ..
T Consensus 208 ~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~~yr~sqq--------~qh~~~~~da---------~~- 267 (556)
T KOG3807|consen 208 YQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGETIYRQSQQ--------CQHQSPQHEA---------QL- 267 (556)
T ss_pred HHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHHHHhhHHH--------Hhhhccchhh---------hh-
Confidence 334445566666666665432 233567777777777754433210000 0000000000 00
Q ss_pred CCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHH
Q psy597 285 GGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKE 353 (546)
Q Consensus 285 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~ 353 (546)
..+......+-..++.+..++|+..+|++.++...+-.+ -.....+.-++-..+....-|..
T Consensus 268 -rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p------l~t~lniheNLiEalLE~QAYAD 329 (556)
T KOG3807|consen 268 -RRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP------LLTMLNIHENLLEALLELQAYAD 329 (556)
T ss_pred -hcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 124445566778899999999999999999988765421 12233444455555544444433
No 435
>KOG0508|consensus
Probab=68.88 E-value=2.9 Score=41.89 Aligned_cols=73 Identities=30% Similarity=0.408 Sum_probs=63.8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q psy597 317 NDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQN 389 (546)
Q Consensus 317 ~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 389 (546)
-+++-+.+.++|+++|.........|-+|...|+++..++++.-|+.+.++.+.+-+|.....+...+.++..
T Consensus 319 mqaLiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS~ 391 (615)
T KOG0508|consen 319 MQALIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFSF 391 (615)
T ss_pred HHHHHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHH
Confidence 3566777888999999988888888999999999999999999999999999888889888888888877653
No 436
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=68.79 E-value=8 Score=22.18 Aligned_cols=27 Identities=33% Similarity=0.498 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 421 TKNNLASCYLKQGKYKEAEILYKQVLT 447 (546)
Q Consensus 421 ~~~~La~~y~~~g~~~eA~~~~~~al~ 447 (546)
+|+.+-..|.+.|++++|...|++..+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 477888999999999999999998765
No 437
>KOG3650|consensus
Probab=68.57 E-value=19 Score=27.52 Aligned_cols=48 Identities=31% Similarity=0.416 Sum_probs=38.9
Q ss_pred CchHHHHHHHHhhHHHHHcCcCHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhh
Q psy597 60 PVEEEKRNMVKNSLEIIELGLNEAQVMTALAGHLQNVEAEKQKLRTQVRRLVQEN 114 (546)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (546)
...+||..+|.+-||-. ..+-.|+..+.+|..|.-|||....-|+|=.
T Consensus 53 d~~EEKaRlItQVLELQ-------nTLdDLSqRVdsVKEEnLKLrSENQVLGQYI 100 (120)
T KOG3650|consen 53 DVEEEKARLITQVLELQ-------NTLDDLSQRVDSVKEENLKLRSENQVLGQYI 100 (120)
T ss_pred ChHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Confidence 34599999999988865 5778899999999999999888777776654
No 438
>PRK03918 chromosome segregation protein; Provisional
Probab=68.40 E-value=1.3e+02 Score=34.36 Aligned_cols=37 Identities=8% Similarity=0.269 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHhhh
Q psy597 101 QKLRTQVRRLVQENAWLRDELANTQQKLQSSEQANSQ 137 (546)
Q Consensus 101 ~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~~~~~q 137 (546)
+.++.++..+.....++..++..++..+......+.+
T Consensus 241 ~~l~~~~~~l~~~~~~l~~~i~~l~~el~~l~~~l~~ 277 (880)
T PRK03918 241 EELEKELESLEGSKRKLEEKIRELEERIEELKKEIEE 277 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444443333
No 439
>KOG4005|consensus
Probab=68.27 E-value=34 Score=31.03 Aligned_cols=58 Identities=24% Similarity=0.267 Sum_probs=47.8
Q ss_pred hhHHHHHcCcCHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHH
Q psy597 71 NSLEIIELGLNEAQVMTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSSEQA 134 (546)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~~~ 134 (546)
..++.|+ ++|..|..--+-+..|.+.||++..-|.-+|..|+.+|....+.|.++.++
T Consensus 90 aRm~eme------~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~ 147 (292)
T KOG4005|consen 90 ARMEEME------YEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQ 147 (292)
T ss_pred HHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHH
Confidence 4456664 688888888888999999999999999999988888888888888777654
No 440
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=68.19 E-value=30 Score=27.74 Aligned_cols=52 Identities=23% Similarity=0.284 Sum_probs=36.9
Q ss_pred HHhhHHHHHcCcCHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHH
Q psy597 69 VKNSLEIIELGLNEAQVMTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQ 126 (546)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~ 126 (546)
|..++..++ +-+..|...+..+..+.+.|-.+..+|.-||..||..|....+
T Consensus 6 lfd~l~~le------~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~ 57 (110)
T PRK13169 6 IFDALDDLE------QNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELEA 57 (110)
T ss_pred HHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445555554 3345667777788888888888888888888888888887633
No 441
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=68.01 E-value=60 Score=34.09 Aligned_cols=108 Identities=14% Similarity=0.068 Sum_probs=79.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHH
Q psy597 328 GENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQR-ALEI 406 (546)
Q Consensus 328 g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~-al~~ 406 (546)
++.+|...-..+ ++..+...++...+.-.+..++.. +|..+.+..+||......|..-.+...+.. +...
T Consensus 61 ~~~~~~llla~~-lsi~~~~~~~~~~~~~~~~~~l~~--------~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~ 131 (620)
T COG3914 61 NDVNPELLLAAF-LSILLAPLADSTLAFLAKRIPLSV--------NPENCPAVQNLAAALELDGLQFLALADISEIAEWL 131 (620)
T ss_pred CCCCHHHHHHHH-HHhhccccccchhHHHHHhhhHhc--------CcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 355676655555 888888899998888888888877 488899999999988887776666655544 5444
Q ss_pred HHHhcCCCChHHHHHHHH------HHHHHHHcCCHHHHHHHHHHHHHhhhhc
Q psy597 407 YELKLGPDDSNVAKTKNN------LASCYLKQGKYKEAEILYKQVLTRAHER 452 (546)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~------La~~y~~~g~~~eA~~~~~~al~~~~~~ 452 (546)
.|........ ++.....+|+..++.....++....+..
T Consensus 132 --------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~ 175 (620)
T COG3914 132 --------SPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKY 175 (620)
T ss_pred --------CcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhh
Confidence 4444433333 5888888899999999988888876654
No 442
>PRK11637 AmiB activator; Provisional
Probab=67.82 E-value=83 Score=32.36 Aligned_cols=75 Identities=8% Similarity=0.144 Sum_probs=39.1
Q ss_pred HHHHHHHHhhHHHHHcCcCHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy597 63 EEKRNMVKNSLEIIELGLNEAQVMTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSSEQANSQLEEEK 142 (546)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~~~~~qlee~~ 142 (546)
+++...+++.++.+.. -+..+-.-+..++.+...+..++..+.++..-+..++..++..+...+..+.++++.+
T Consensus 46 ~~~l~~l~~qi~~~~~------~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l 119 (428)
T PRK11637 46 RDQLKSIQQDIAAKEK------SVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQ 119 (428)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555556666655543 2333344444555555555555555555555555555555555555555555555444
Q ss_pred H
Q psy597 143 K 143 (546)
Q Consensus 143 ~ 143 (546)
.
T Consensus 120 ~ 120 (428)
T PRK11637 120 A 120 (428)
T ss_pred H
Confidence 4
No 443
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=67.67 E-value=27 Score=35.62 Aligned_cols=50 Identities=20% Similarity=0.290 Sum_probs=40.0
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHH
Q psy597 85 VMTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSSEQA 134 (546)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~~~ 134 (546)
-+..|...+..++.+.++|..|.++|..||.-|+....++.++++..-++
T Consensus 60 TlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~ 109 (472)
T TIGR03752 60 TLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQS 109 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 56678888999999999999999999999998888766666666554433
No 444
>PF13041 PPR_2: PPR repeat family
Probab=67.65 E-value=28 Score=23.00 Aligned_cols=29 Identities=28% Similarity=0.492 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 215 LRTLHNLVIQYASQGRYEVAVPLCKQALE 243 (546)
Q Consensus 215 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 243 (546)
..+|..+-..|.+.|++++|..+|++..+
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45788899999999999999999999886
No 445
>KOG0128|consensus
Probab=67.55 E-value=2e+02 Score=31.72 Aligned_cols=225 Identities=12% Similarity=0.126 Sum_probs=127.4
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
.++.....+..|-.+++..|++++-...-.++.+++ +..|....-|..--......+.-.++...|++++..+..
T Consensus 108 i~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~-----pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~~ 182 (881)
T KOG0128|consen 108 INSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIA-----PLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDYNS 182 (881)
T ss_pred ccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-----CCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhccccc
Confidence 344455567777788888888877666656655554 334443333322222222347888899999999866421
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 368 VLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 447 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~ 447 (546)
+ ......+......+..+...++++.-...|.+++........ ........+..+-..|...-..++-+.++...+.
T Consensus 183 v--~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t-~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~ 259 (881)
T KOG0128|consen 183 V--PIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHIT-EGAAIWEMYREFEVTYLCNVEQRQVIALFVRELK 259 (881)
T ss_pred c--hHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhc-ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 1 001122223333344456678899999999999987544332 2334556666666677666666667777776665
Q ss_pred hhhhcccCcccCCChhhHH----------HHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHH
Q psy597 448 RAHEREFGACDGDNKPIWQ----------DRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKE 517 (546)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~ 517 (546)
..-. ....++. .....+++.+.....+.+..+.+.... .+....-+..+-......|.+-.
T Consensus 260 ~~~D--------~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~-~~~~~q~~~~yidfe~~~G~p~r 330 (881)
T KOG0128|consen 260 QPLD--------EDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQK-EPIKDQEWMSYIDFEKKSGDPVR 330 (881)
T ss_pred ccch--------hhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCCchH
Confidence 4211 1111111 122334455555545554444444332 34444556667777777888777
Q ss_pred HHHHHHHHHHHh
Q psy597 518 AEILYKQVLTRA 529 (546)
Q Consensus 518 A~~~~~~al~~~ 529 (546)
-...+++++.-.
T Consensus 331 i~l~~eR~~~E~ 342 (881)
T KOG0128|consen 331 IQLIEERAVAEM 342 (881)
T ss_pred HHHHHHHHHHhc
Confidence 667777776544
No 446
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=67.51 E-value=1.6e+02 Score=30.59 Aligned_cols=94 Identities=27% Similarity=0.320 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q psy597 337 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDS 416 (546)
Q Consensus 337 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~ 416 (546)
++..+-.++...-++.--...|.+++.+ ...-.++..++.+|... ..++=....++.++. +.
T Consensus 68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~---------~e~kmal~el~q~y~en-~n~~l~~lWer~ve~--------df 129 (711)
T COG1747 68 CLVTLLTIFGDNHKNQIVEHLCTRVLEY---------GESKMALLELLQCYKEN-GNEQLYSLWERLVEY--------DF 129 (711)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHh---------cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHh--------cc
Confidence 4444555566666677777889999888 34566788899999887 556667777777777 56
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q psy597 417 NVAKTKNNLASCYLKQGKYKEAEILYKQVLTRA 449 (546)
Q Consensus 417 ~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~ 449 (546)
+....-..|+..|.+ ++...+..+|.+++...
T Consensus 130 nDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrf 161 (711)
T COG1747 130 NDVVIGRELADKYEK-IKKSKAAEFFGKALYRF 161 (711)
T ss_pred hhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHh
Confidence 666666778887776 88899999999998764
No 447
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=66.85 E-value=9 Score=36.56 Aligned_cols=45 Identities=29% Similarity=0.366 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 396 VERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 396 A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
|+.+|.+|+.+ .|.....++.||.++...|+.=.|+-+|-+++..
T Consensus 1 A~~~Y~~A~~l--------~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~ 45 (278)
T PF10373_consen 1 AERYYRKAIRL--------LPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAV 45 (278)
T ss_dssp HHHHHHHHHHH---------TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSS
T ss_pred CHHHHHHHHHh--------CCCCCCcccchhhhhccccchHHHHHHHHHHHhc
Confidence 78999999999 8889999999999999999999999999888853
No 448
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=66.70 E-value=54 Score=29.45 Aligned_cols=62 Identities=27% Similarity=0.402 Sum_probs=54.3
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q psy597 84 QVMTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSSEQANSQLEEEKKHL 145 (546)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~~~~~qlee~~~~l 145 (546)
.-+..|-..+..++.+...|...++.+...|.-+.||+..++-.+...+..+..++++...|
T Consensus 116 ~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~L 177 (194)
T PF08614_consen 116 RRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENREL 177 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777888888888899999999999999999999999999999999999999988754
No 449
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=66.52 E-value=51 Score=24.46 Aligned_cols=33 Identities=27% Similarity=0.438 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 377 AKQLNNLALLCQNQSKYEEVERYYQRALEIYEL 409 (546)
Q Consensus 377 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~ 409 (546)
+..+...|.-+-..|+|++|+.+|..+++.+..
T Consensus 6 Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 6 AVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 344555666677899999999999999998766
No 450
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=66.48 E-value=71 Score=26.14 Aligned_cols=73 Identities=16% Similarity=0.073 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy597 296 LNILALVYRDQNKYKEAANLLNDALTIREKTLGENH-------AAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 368 (546)
Q Consensus 296 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 368 (546)
+..+|...+..+++-.++-.|++|+.+.++....+. ........+||..+...|+.+=.++|++-|-+.....
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 567788889999999999999999999877621111 1123467899999999999999999999887765544
No 451
>KOG0508|consensus
Probab=66.12 E-value=4 Score=40.97 Aligned_cols=141 Identities=21% Similarity=0.243 Sum_probs=94.6
Q ss_pred CChhHHHHHHHHHHHHHHh-hcHHHHHHHHHHHHHHHHHhc---CC---CCHHHHHHHHHH----HHHHHHcCCHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQ-NKYKEAANLLNDALTIREKTL---GE---NHAAVAATLNNL----AVLYGKRGKYKEAEP 356 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~---g~---~~~~~~~~~~~l----a~~~~~~g~~~~A~~ 356 (546)
+......++-.+|..|... .+.-.|..++.++++...... -+ -.|..+.-+... ..+-.-.++.+ .
T Consensus 240 sr~~riealEllGat~~dkk~D~~~al~~w~~aMe~r~~~~e~~~e~e~~~p~~ay~~~re~~~~~elE~lv~D~d---~ 316 (615)
T KOG0508|consen 240 SRESRIEALELLGATYVDKKRDLLGALKYWRRAMEERESDGESILEKEPLEPVLAYGYGREVNNREELEELVEDPD---E 316 (615)
T ss_pred chhhHHHHHHHhcccccchhHHHHHHHHHHHHHHHhhhhccccccccCCCCchhhhhhhhhcCCHHHHHHHhcChH---H
Confidence 3344566777777777654 357778888888888765410 00 011111111111 11111112222 1
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q psy597 357 LCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK 431 (546)
Q Consensus 357 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~ 431 (546)
.--+++-+.++++|+.||+........|-+|...|+++..++..+-|+++.++.+.|-+|.....+...+.++..
T Consensus 317 ~RmqaLiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS~ 391 (615)
T KOG0508|consen 317 MRMQALIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFSF 391 (615)
T ss_pred HHHHHHHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHH
Confidence 223567778899999999998888888999999999999999999999999998888888888888877776643
No 452
>KOG2129|consensus
Probab=65.91 E-value=1.4e+02 Score=29.89 Aligned_cols=50 Identities=30% Similarity=0.320 Sum_probs=35.1
Q ss_pred cCcCHHHHHHHHHhhhhhHHHHHHHHHHHHHH-----------HHHhhhhcHHHHHHHHHHHHH
Q psy597 78 LGLNEAQVMTALAGHLQNVEAEKQKLRTQVRR-----------LVQENAWLRDELANTQQKLQS 130 (546)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~~~la~~~~~l~~ 130 (546)
-|.++|.. +..|++-+++|+.+||.+.++ +.+|-...|++++.+|.+|..
T Consensus 243 ~~gD~a~~---~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~rlQrkL~~ 303 (552)
T KOG2129|consen 243 VHGDEAAA---EKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHREENERLQRKLIN 303 (552)
T ss_pred ccCchHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 45566654 456778888899888877654 455666778888888777754
No 453
>PF13041 PPR_2: PPR repeat family
Probab=65.85 E-value=22 Score=23.52 Aligned_cols=30 Identities=17% Similarity=0.180 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 377 AKQLNNLALLCQNQSKYEEVERYYQRALEI 406 (546)
Q Consensus 377 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 406 (546)
..+|+.+-..|.+.|++++|.+.|++..+.
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 456888889999999999999999999875
No 454
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=65.54 E-value=50 Score=23.99 Aligned_cols=59 Identities=15% Similarity=0.252 Sum_probs=36.3
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy597 86 MTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSSEQANSQLEEEKKH 144 (546)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~~~~~qlee~~~~ 144 (546)
...|-+++..+....+.......+|.+|+.-....|........+....+..+.+++++
T Consensus 7 ~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 7 IATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777776777777776665555655555555555555555555443
No 455
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=65.45 E-value=48 Score=23.81 Aligned_cols=34 Identities=26% Similarity=0.326 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy597 377 AKQLNNLALLCQNQSKYEEVERYYQRALEIYELK 410 (546)
Q Consensus 377 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~ 410 (546)
+..+...|.-+-..|++++|+.+|.++++.+...
T Consensus 5 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~ 38 (69)
T PF04212_consen 5 AIELIKKAVEADEAGNYEEALELYKEAIEYLMQA 38 (69)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 3344566667778999999999999999987654
No 456
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=65.23 E-value=21 Score=32.85 Aligned_cols=104 Identities=13% Similarity=0.068 Sum_probs=58.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhhhcc--cCccc----CCChhhHH--HHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHH
Q psy597 428 CYLKQGKYKEAEILYKQVLTRAHERE--FGACD----GDNKPIWQ--DRQKNKAKNREKYYQRALEIYELKLGPDDSNVA 499 (546)
Q Consensus 428 ~y~~~g~~~eA~~~~~~al~~~~~~~--~~~~~----~~~~~~~~--~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~ 499 (546)
-.+..|+|+.|+++..-++......+ +.+.. ......|. ....|.. ...++............-.+...+
T Consensus 92 W~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~--~e~~~~~~~~~l~~~~dmpd~vrA 169 (230)
T PHA02537 92 WRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGES--VEPYFLRVFLDLTTEWDMPDEVRA 169 (230)
T ss_pred eeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCC--CChHHHHHHHHHHhcCCCChHHHH
Confidence 34578999999999999998543322 11100 01111111 1112221 112233333222222222345566
Q ss_pred HHHHHHHHHHH---------HcCCHHHHHHHHHHHHHHhhhhc
Q psy597 500 KTKNNLASCYL---------KQGKYKEAEILYKQVLTRAHERE 533 (546)
Q Consensus 500 ~~~~~La~~y~---------~~g~~~~A~~~~~~al~~~~~~~ 533 (546)
..+...|..+. ..++...|+.++++|+.+.+..+
T Consensus 170 Kl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~G 212 (230)
T PHA02537 170 KLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCG 212 (230)
T ss_pred HHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCC
Confidence 77778888774 45688899999999999987654
No 457
>PLN03188 kinesin-12 family protein; Provisional
Probab=64.84 E-value=1.2e+02 Score=35.29 Aligned_cols=68 Identities=29% Similarity=0.433 Sum_probs=45.6
Q ss_pred HHHHHHHHhhHHHHHcCcC--------------HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHH
Q psy597 63 EEKRNMVKNSLEIIELGLN--------------EAQVMTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKL 128 (546)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~l 128 (546)
+||-+.|-..=-.|..|++ |..-..+|+.-+.++.+|+.|=| +-|..||.-|+.+|.+|-...
T Consensus 1120 ~ek~~~ll~~hr~i~egi~dvkkaaakag~kg~~~~f~~alaae~s~l~~ereker---~~~~~enk~l~~qlrdtaeav 1196 (1320)
T PLN03188 1120 EEKHIQLLARHRRIQEGIDDVKKAAARAGVRGAESKFINALAAEISALKVEREKER---RYLRDENKSLQAQLRDTAEAV 1196 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhHHHHHHHhhHHHHH
Confidence 5666666555556666655 45566788888888888877655 446678888888888776544
Q ss_pred HHHHH
Q psy597 129 QSSEQ 133 (546)
Q Consensus 129 ~~~~~ 133 (546)
+.+-.
T Consensus 1197 ~aage 1201 (1320)
T PLN03188 1197 QAAGE 1201 (1320)
T ss_pred HHHHH
Confidence 44333
No 458
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=64.80 E-value=11 Score=21.51 Aligned_cols=27 Identities=33% Similarity=0.396 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 337 TLNNLAVLYGKRGKYKEAEPLCKRALE 363 (546)
Q Consensus 337 ~~~~la~~~~~~g~~~~A~~~~~~al~ 363 (546)
+|+.+-..|.+.|++++|...|.+..+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 467788999999999999999998764
No 459
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=64.64 E-value=44 Score=24.73 Aligned_cols=35 Identities=26% Similarity=0.265 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q psy597 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 369 (546)
Q Consensus 335 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 369 (546)
+..+...|.-+-..|++.+|+.+|+++++...+..
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~ 40 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIV 40 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 44566777888899999999999999999876653
No 460
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=64.33 E-value=18 Score=36.74 Aligned_cols=128 Identities=15% Similarity=0.108 Sum_probs=81.5
Q ss_pred HHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q psy597 304 RDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNL 383 (546)
Q Consensus 304 ~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 383 (546)
+..|+.-.|-.-...++... +.. +......+.+...+|+|+.|...+..+-.+. + ....+...+
T Consensus 300 ~~~gd~~aas~~~~~~lr~~-----~~~---p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~----~----s~~~~~~~~ 363 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQ-----QQD---PVLIQLRSVIFSHLGYYEQAYQDISDVEKII----G----TTDSTLRCR 363 (831)
T ss_pred hhccCHHHHHHHHHHHHHhC-----CCC---chhhHHHHHHHHHhhhHHHHHHHhhchhhhh----c----CCchHHHHH
Confidence 34577777776666666554 222 3334556788999999999998877665443 1 122233444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccC
Q psy597 384 ALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFG 455 (546)
Q Consensus 384 a~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~ 455 (546)
-.....+|++++|.....-.+.- ......+...-|.....+|-+++|..++++.+.+.++...+
T Consensus 364 ~r~~~~l~r~~~a~s~a~~~l~~--------eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g 427 (831)
T PRK15180 364 LRSLHGLARWREALSTAEMMLSN--------EIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSG 427 (831)
T ss_pred HHhhhchhhHHHHHHHHHHHhcc--------ccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhccc
Confidence 45566788888887766554432 22233333334445567788999999999999887765544
No 461
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=64.22 E-value=15 Score=21.54 Aligned_cols=27 Identities=37% Similarity=0.461 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 421 TKNNLASCYLKQGKYKEAEILYKQVLT 447 (546)
Q Consensus 421 ~~~~La~~y~~~g~~~eA~~~~~~al~ 447 (546)
+|+.+-..|.+.|++++|..+|.+...
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 467788899999999999999998765
No 462
>KOG2908|consensus
Probab=64.11 E-value=1.5e+02 Score=29.02 Aligned_cols=101 Identities=19% Similarity=0.209 Sum_probs=68.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHH
Q psy597 224 QYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVY 303 (546)
Q Consensus 224 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~ 303 (546)
+..+.++.++|+.++++..+...... .+.....+...+|.++
T Consensus 84 ~~~~~~D~~~al~~Le~i~~~~~~~~--------------------------------------e~~av~~~~t~~~r~~ 125 (380)
T KOG2908|consen 84 VSEQISDKDEALEFLEKIIEKLKEYK--------------------------------------EPDAVIYILTEIARLK 125 (380)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhc--------------------------------------cchhHHHHHHHHHHHH
Confidence 33455689999999999888655433 3345666778889999
Q ss_pred HHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHH
Q psy597 304 RDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVL-YGKRGKYKEAEPLCKRALE 363 (546)
Q Consensus 304 ~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~ 363 (546)
...|+..++.+.+.+.-.......+ -++.+...++.++.- |...|++...-...-+-+.
T Consensus 126 L~i~DLk~~kk~ldd~~~~ld~~~~-v~~~Vh~~fY~lssqYyk~~~d~a~yYr~~L~YL~ 185 (380)
T KOG2908|consen 126 LEINDLKEIKKLLDDLKSMLDSLDG-VTSNVHSSFYSLSSQYYKKIGDFASYYRHALLYLG 185 (380)
T ss_pred HhcccHHHHHHHHHHHHHHHhcccC-CChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 9999999999999888876655522 234344555556554 4556777665554444443
No 463
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=64.01 E-value=31 Score=25.84 Aligned_cols=38 Identities=18% Similarity=0.113 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q psy597 375 DVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLG 412 (546)
Q Consensus 375 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~ 412 (546)
..+..+.+.|..+-..|+.++|+.+|++++........
T Consensus 6 ~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~a 43 (79)
T cd02679 6 KQAFEEISKALRADEWGDKEQALAHYRKGLRELEEGIA 43 (79)
T ss_pred HHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcC
Confidence 34455566666777789999999999999998776543
No 464
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=63.99 E-value=1.4e+02 Score=28.51 Aligned_cols=138 Identities=17% Similarity=0.190 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCC--C---CHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHH
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGE--N---HAAVAATLNNLA-VLYGKRGKYKEAEPLCKRALEIR 365 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~--~---~~~~~~~~~~la-~~~~~~g~~~~A~~~~~~al~~~ 365 (546)
....+-.-+....-..+|..|++..+++++......+. + ...+--.+..+| .++..+++|.+.+.+.-+-...-
T Consensus 34 a~~lLe~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~p 113 (309)
T PF07163_consen 34 AVSLLEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVP 113 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCc
Confidence 34556667788888899999999999999876332111 1 112222333344 56888999999999887777665
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-----HHHcCCHHHHHH
Q psy597 366 EKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASC-----YLKQGKYKEAEI 440 (546)
Q Consensus 366 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~-----y~~~g~~~eA~~ 440 (546)
++. | +.++-.--.+|.+.|.+....+.-..-+.. +++...+. |..++.+ +.=.|.+++|.+
T Consensus 114 Ekl-----P--pkIleLCILLysKv~Ep~amlev~~~WL~~------p~Nq~lp~-y~~vaELyLl~VLlPLG~~~eAee 179 (309)
T PF07163_consen 114 EKL-----P--PKILELCILLYSKVQEPAAMLEVASAWLQD------PSNQSLPE-YGTVAELYLLHVLLPLGHFSEAEE 179 (309)
T ss_pred ccC-----C--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhC------cccCCchh-hHHHHHHHHHHHHhccccHHHHHH
Confidence 444 3 222333345677889988887777666654 33322222 4444444 455799999998
Q ss_pred HHH
Q psy597 441 LYK 443 (546)
Q Consensus 441 ~~~ 443 (546)
+..
T Consensus 180 lv~ 182 (309)
T PF07163_consen 180 LVV 182 (309)
T ss_pred HHh
Confidence 774
No 465
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=63.94 E-value=20 Score=32.63 Aligned_cols=42 Identities=24% Similarity=0.344 Sum_probs=29.6
Q ss_pred HHHHhhhhhHHHHHH-------HHHHHHHHHHHhhhhcHHHHHHHHHHH
Q psy597 87 TALAGHLQNVEAEKQ-------KLRTQVRRLVQENAWLRDELANTQQKL 128 (546)
Q Consensus 87 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~la~~~~~l 128 (546)
-.++.|+=..|.|+| +|+.||..|...|.-+|..++.....+
T Consensus 60 h~~~~~~y~~e~e~~sy~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~ 108 (389)
T PF06216_consen 60 HIISDYIYNKEFERQSYSNEWISLNDQVSHLQHQNSEQRQQIREMREII 108 (389)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666665 789999999999977776666554443
No 466
>KOG2077|consensus
Probab=63.66 E-value=1.4e+02 Score=31.20 Aligned_cols=105 Identities=21% Similarity=0.175 Sum_probs=73.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhh--hcCCCCCcCCCCCCCCCCC
Q psy597 94 QNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSSEQANSQLEEEKKHLEFMSSIR--KYDSDIQGDENSGDQKSDK 171 (546)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~~~~~qlee~~~~l~~~~~l~--~~~~~~~~~~~~~~~~~~~ 171 (546)
+++--=|-.|=++|..|.-|+.-||+||...++.--+.+..+..+||+++.+..-...+ ++..+.. .
T Consensus 318 NALNiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ar~~~~~~e~--d--------- 386 (832)
T KOG2077|consen 318 NALNIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQKAKDDED--D--------- 386 (832)
T ss_pred hHHHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc--c---------
Confidence 44445577888999999999999999999999999999999999999998653332222 2221100 0
Q ss_pred CCCCccccccCCCCCCcCCCCCCCCChhhHHHhhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 172 HKQDDPVVDLFPDEDNDDRNNLSPTPPSQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALED 244 (546)
Q Consensus 172 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 244 (546)
-. |.+ ...--+...++.++.....|.+-+--++++++.
T Consensus 387 ---------di---------------PmA-----------qRkRFTRvEMaRVLMeRNqYKErLMELqEavrW 424 (832)
T KOG2077|consen 387 ---------DI---------------PMA-----------QRKRFTRVEMARVLMERNQYKERLMELQEAVRW 424 (832)
T ss_pred ---------cc---------------cHH-----------HHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhH
Confidence 00 101 112235567888999999999888888888774
No 467
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=63.49 E-value=25 Score=27.57 Aligned_cols=43 Identities=30% Similarity=0.324 Sum_probs=34.3
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHH
Q psy597 88 ALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQS 130 (546)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~l~~ 130 (546)
.|...+..+=+|...|+.++..+..||.-|+=|...+..+|+.
T Consensus 12 ~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 12 NLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 3455566666788889999999999999998888888888765
No 468
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=63.31 E-value=16 Score=21.42 Aligned_cols=27 Identities=37% Similarity=0.464 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 217 TLHNLVIQYASQGRYEVAVPLCKQALE 243 (546)
Q Consensus 217 ~~~~lg~~~~~~g~~~~A~~~~~~al~ 243 (546)
+|..+-..|.+.|++++|..+|.+...
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 467788899999999999999988765
No 469
>KOG0890|consensus
Probab=62.96 E-value=4e+02 Score=33.51 Aligned_cols=57 Identities=12% Similarity=0.105 Sum_probs=43.8
Q ss_pred HHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Q psy597 466 QDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 532 (546)
Q Consensus 466 ~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~~ 532 (546)
..+..|.++.|..+.-+|.+. ..+.++...|..++.+|+-..|+..+++.+......
T Consensus 1679 iaR~aG~~q~A~nall~A~e~----------r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~ 1735 (2382)
T KOG0890|consen 1679 IARLAGHLQRAQNALLNAKES----------RLPEIVLERAKLLWQTGDELNALSVLQEILSKNFPD 1735 (2382)
T ss_pred HHHhcccHHHHHHHHHhhhhc----------ccchHHHHHHHHHHhhccHHHHHHHHHHHHHhhccc
Confidence 355567777777776666543 256788899999999999999999999999765433
No 470
>PRK09039 hypothetical protein; Validated
Probab=62.81 E-value=1.7e+02 Score=29.11 Aligned_cols=120 Identities=21% Similarity=0.225 Sum_probs=0.0
Q ss_pred HhhhhhHHHHHHHHhHhhhHHHHHhhhhhccCCCchHHHHHHHHhhHHHHHcCcCHHHH---------------HHHHHh
Q psy597 27 IMTNTKTVQQGLEALKNEHTSILNSLSETQHGGPVEEEKRNMVKNSLEIIELGLNEAQV---------------MTALAG 91 (546)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~ 91 (546)
+-......-+-|..|..+-..+-..|.-......-.+++...++..++..+.-..+.+- +..+..
T Consensus 44 Ls~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~ 123 (343)
T PRK09039 44 LSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQ 123 (343)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHH
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q psy597 92 HLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSSEQANSQLEEEKKHLE 146 (546)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~~~~~qlee~~~~l~ 146 (546)
-|....++....+.+|.+|.++.+-|+.+|+.++..|..++.........+..+.
T Consensus 124 ~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~ 178 (343)
T PRK09039 124 ELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLG 178 (343)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 471
>KOG2396|consensus
Probab=62.53 E-value=32 Score=35.26 Aligned_cols=83 Identities=17% Similarity=0.143 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC
Q psy597 354 AEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQG 433 (546)
Q Consensus 354 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g 433 (546)
-...|+.|...+ +.....|.+....+.+.+.+.+.-..|.+++.. +|+.+..|..-|.-.+..+
T Consensus 90 Iv~lyr~at~rf--------~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~--------Hp~~~dLWI~aA~wefe~n 153 (568)
T KOG2396|consen 90 IVFLYRRATNRF--------NGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAK--------HPNNPDLWIYAAKWEFEIN 153 (568)
T ss_pred HHHHHHHHHHhc--------CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHh--------CCCCchhHHhhhhhHHhhc
Confidence 345566666654 445667777777777777788889999999988 8888888888887777766
Q ss_pred C-HHHHHHHHHHHHHhhhhc
Q psy597 434 K-YKEAEILYKQVLTRAHER 452 (546)
Q Consensus 434 ~-~~eA~~~~~~al~~~~~~ 452 (546)
. .+.|..++.+++...|+.
T Consensus 154 ~ni~saRalflrgLR~npds 173 (568)
T KOG2396|consen 154 LNIESARALFLRGLRFNPDS 173 (568)
T ss_pred cchHHHHHHHHHHhhcCCCC
Confidence 5 888999999999875543
No 472
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=62.53 E-value=23 Score=23.17 Aligned_cols=33 Identities=30% Similarity=0.438 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHH
Q psy597 96 VEAEKQKLRTQVRRLVQENAWLRDELANTQQKL 128 (546)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~l 128 (546)
+.+....|..+..+|.+||.-|+.++..+..++
T Consensus 10 LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 10 LKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344455566666666666666666665555444
No 473
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=62.52 E-value=1.8e+02 Score=29.48 Aligned_cols=76 Identities=29% Similarity=0.374 Sum_probs=49.0
Q ss_pred HHHHHHHHhhHHHHHcCcC--------------HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHH
Q psy597 63 EEKRNMVKNSLEIIELGLN--------------EAQVMTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKL 128 (546)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~l 128 (546)
+||-+-|-.-=..|..|+. ++.-..+|+.-+.++.+|+.|=| +-|..+|.-|+.+|.+|-...
T Consensus 350 qEk~~~Ll~~Hr~i~egI~dVKkaAakAg~kG~~~rF~~slaaEiSalr~erEkEr---~~l~~eNk~L~~QLrDTAEAV 426 (488)
T PF06548_consen 350 QEKHNDLLARHRRIMEGIEDVKKAAAKAGVKGAESRFINSLAAEISALRAEREKER---RFLKDENKGLQIQLRDTAEAV 426 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHhHHHHH
Confidence 5665555555555555554 45566677777777777766644 446678999999998887665
Q ss_pred HHHHHHhhhHHHH
Q psy597 129 QSSEQANSQLEEE 141 (546)
Q Consensus 129 ~~~~~~~~qlee~ 141 (546)
+.+-..+..|-++
T Consensus 427 qAagEllvrl~ea 439 (488)
T PF06548_consen 427 QAAGELLVRLREA 439 (488)
T ss_pred HHHHHHHHHHHhH
Confidence 5555555444443
No 474
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=62.34 E-value=98 Score=32.45 Aligned_cols=93 Identities=12% Similarity=0.105 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCC
Q psy597 419 AKTKNNLASCYLKQG---KYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDD 495 (546)
Q Consensus 419 ~~~~~~La~~y~~~g---~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~ 495 (546)
......|-++++..| +|.-|+-.+-...++.+..+ -..++..|.+|+...+..+...
T Consensus 257 ~~lqq~lLw~lyd~ghl~~YPmALg~LadLeEi~pt~~-------------------r~~~~~l~~~AI~sa~~~Y~n~- 316 (618)
T PF05053_consen 257 AQLQQDLLWLLYDMGHLARYPMALGNLADLEEIDPTPG-------------------RPTPLELFNEAISSARTYYNNH- 316 (618)
T ss_dssp HHHHHHHHHHHHHTTTTTT-HHHHHHHHHHHHHS--TT-------------------S--HHHHHHHHHHHHHHHCTT--
T ss_pred HHHHHHHHHHHHhcCchhhCchhhhhhHhHHhhccCCC-------------------CCCHHHHHHHHHHHHHHHhcCC-
Confidence 334444444555444 46666666666666544322 2234566777777776666532
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhc
Q psy597 496 SNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHERE 533 (546)
Q Consensus 496 ~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~~~ 533 (546)
...-|..+|-.|++.+++.+|+.++-+|-.....-.
T Consensus 317 --HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~Yn 352 (618)
T PF05053_consen 317 --HVYPYTYLGGYYYRHKRYREALRSWAEAADVIRKYN 352 (618)
T ss_dssp ---SHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTSB
T ss_pred --ccccceehhhHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 234556678888888888888888888776654433
No 475
>PRK10132 hypothetical protein; Provisional
Probab=62.06 E-value=81 Score=25.25 Aligned_cols=88 Identities=17% Similarity=0.329 Sum_probs=50.6
Q ss_pred hhhHHHHHHHHhHhhhHHHHHhhhhhccC-CCchHHHHHHHHhhHHHHHcCcCHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q psy597 30 NTKTVQQGLEALKNEHTSILNSLSETQHG-GPVEEEKRNMVKNSLEIIELGLNEAQVMTALAGHLQNVEAEKQKLRTQVR 108 (546)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (546)
++..|-...|.|++|-.+++.++.+.... .....++...++..++.. |.+++- .|.. .+.+.......-...+
T Consensus 6 ~~~~~~~q~e~L~~Dl~~L~~~le~ll~~~~~~~~~~~~~lR~r~~~~---L~~ar~--~l~~-~~~~~~~~~~a~~~~~ 79 (108)
T PRK10132 6 NRNDVDDGVQDIQNDVNQLADSLESVLKSWGSDAKGEAEAARRKAQAL---LKETRA--RMHG-RTRVQQAARDAVGCAD 79 (108)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH---HHHHHH--HHhh-hHHHHHHHHHHHHHHH
Confidence 45566778888888888888888765533 333456666666665553 222321 1111 1111111133334778
Q ss_pred HHHHhhhhcHHHHHH
Q psy597 109 RLVQENAWLRDELAN 123 (546)
Q Consensus 109 ~~~~~~~~l~~~la~ 123 (546)
.-.++|.|--=-++.
T Consensus 80 ~~V~~~Pw~svgiaa 94 (108)
T PRK10132 80 TFVRERPWCSVGTAA 94 (108)
T ss_pred HHHHhCcHHHHHHHH
Confidence 889999997665543
No 476
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.04 E-value=1.6e+02 Score=28.78 Aligned_cols=33 Identities=6% Similarity=0.002 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q psy597 499 AKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 531 (546)
Q Consensus 499 ~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~ 531 (546)
+.+-+.-|..+.-.|++.++..++..++-+.++
T Consensus 213 pYv~Yl~~lf~a~n~dv~kg~~~~~e~~gi~qd 245 (449)
T COG3014 213 PYVSYLSGLFYALNGDVNKGLGYLNEAYGISQD 245 (449)
T ss_pred HHHHHHHHHhcccCccHhHHHHHHHHHhccCch
Confidence 444455666777788999999999988877765
No 477
>PHA02562 46 endonuclease subunit; Provisional
Probab=61.89 E-value=1.3e+02 Score=32.17 Aligned_cols=56 Identities=23% Similarity=0.308 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Q psy597 96 VEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSSEQANSQLEEEKKHLEFMSSI 151 (546)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~~~~~qlee~~~~l~~~~~l 151 (546)
...+..+|+..+.+|...+.-+.++|..+..++........++++++...+++..+
T Consensus 356 ~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~~~~~i~~~ 411 (562)
T PHA02562 356 LVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYHRGIVTDL 411 (562)
T ss_pred HHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445566666666666666666777777777777777777777776665554443
No 478
>PF10858 DUF2659: Protein of unknown function (DUF2659); InterPro: IPR022588 This bacterial family of proteins has no known function.
Probab=61.69 E-value=1.1e+02 Score=26.55 Aligned_cols=105 Identities=11% Similarity=0.033 Sum_probs=74.2
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChH
Q psy597 296 LNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPD 375 (546)
Q Consensus 296 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 375 (546)
....-..-...|.|.+|..++.+.++. +.......+|..++.|.....+-..-+.--.+..+..-....+..|.
T Consensus 96 ~leqva~kis~~~~~eaK~LlnkIi~n------k~YSeistsYaRi~wc~~vidD~nl~i~dk~kL~kyL~yfdd~~kPF 169 (220)
T PF10858_consen 96 ALEQVAIKISEKKYSEAKQLLNKIIEN------KEYSEISTSYARINWCCMVIDDQNLNIQDKEKLIKYLNYFDDEKKPF 169 (220)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHhh------hhHHHHHHHHHHHHHHHheecccccChhhHHHHHHHHhhccCCCCch
Confidence 334444556678999999999999987 44566778888888888876554433333344444433334455677
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 376 VAKQLNNLALLCQNQSKYEEVERYYQRALEI 406 (546)
Q Consensus 376 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 406 (546)
.+.+-...+..-...|.-.+|+.+++..+..
T Consensus 170 WatAtI~kaiwdik~nm~~~aeknL~~l~~S 200 (220)
T PF10858_consen 170 WATATIIKAIWDIKNNMKNQAEKNLKNLLAS 200 (220)
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 7777777788888899999999999888764
No 479
>KOG2908|consensus
Probab=61.49 E-value=1.7e+02 Score=28.70 Aligned_cols=95 Identities=20% Similarity=0.181 Sum_probs=67.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Q psy597 344 LYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKN 423 (546)
Q Consensus 344 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~ 423 (546)
+....++.++|++++++.++..... +.+.........+|.++...|+..++.+.+...-.......+- .+.....++
T Consensus 84 ~~~~~~D~~~al~~Le~i~~~~~~~--~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v-~~~Vh~~fY 160 (380)
T KOG2908|consen 84 VSEQISDKDEALEFLEKIIEKLKEY--KEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGV-TSNVHSSFY 160 (380)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCC-ChhhhhhHH
Confidence 3445679999999999999887665 2223566777888999999999999999999888876665332 343555566
Q ss_pred HHHHHH-HHcCCHHHHHHH
Q psy597 424 NLASCY-LKQGKYKEAEIL 441 (546)
Q Consensus 424 ~La~~y-~~~g~~~eA~~~ 441 (546)
.++.-| ...|++......
T Consensus 161 ~lssqYyk~~~d~a~yYr~ 179 (380)
T KOG2908|consen 161 SLSSQYYKKIGDFASYYRH 179 (380)
T ss_pred HHHHHHHHHHHhHHHHHHH
Confidence 666554 456777654433
No 480
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=61.43 E-value=1.1e+02 Score=26.50 Aligned_cols=121 Identities=17% Similarity=0.211 Sum_probs=74.9
Q ss_pred ChhHHhhhhhHHHHHHHHhHhhhHHHHHhhhhhccCCCchHHHHHHHHhhHHHHHcCc---CHHHHHHHHHhhhhhHHHH
Q psy597 23 NQEEIMTNTKTVQQGLEALKNEHTSILNSLSETQHGGPVEEEKRNMVKNSLEIIELGL---NEAQVMTALAGHLQNVEAE 99 (546)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 99 (546)
|.++|..-..+.-+..+.|+.|-..+-..+..++....-.+.+....+..|-....+. +|. -+......-..++.+
T Consensus 14 sK~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~-dik~AYe~A~~lQ~~ 92 (159)
T PF05384_consen 14 SKEQIFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEE-DIKEAYEEAHELQVR 92 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHH-HHHHHHHHHHHHHHH
Confidence 4466666666666666666666666655555555332222334444444444444443 233 344556666777777
Q ss_pred HHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy597 100 KQKLRTQVRRLVQENAWLRDELANTQQKLQSSEQANSQLEEEKKH 144 (546)
Q Consensus 100 ~~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~~~~~qlee~~~~ 144 (546)
.+-+|.+...|..-=.-|...|..+...+..++..+.|..-....
T Consensus 93 L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~y 137 (159)
T PF05384_consen 93 LAMLREREKQLRERRDELERRLRNLEETIERAENLVSQIGVVLNY 137 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888887777777777777888888888888777666553
No 481
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=61.17 E-value=37 Score=24.07 Aligned_cols=32 Identities=31% Similarity=0.420 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHH
Q psy597 100 KQKLRTQVRRLVQENAWLRDELANTQQKLQSS 131 (546)
Q Consensus 100 ~~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~ 131 (546)
.+.|...|..|..+|..|+.++..+...+...
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L 59 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKELEQLKKEIQSL 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555566666655555555555444433
No 482
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=61.11 E-value=1.7e+02 Score=28.60 Aligned_cols=78 Identities=12% Similarity=0.149 Sum_probs=39.0
Q ss_pred HHHHHHHHhhHHHHHcCcCH-----HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHhhh
Q psy597 63 EEKRNMVKNSLEIIELGLNE-----AQVMTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSSEQANSQ 137 (546)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~~~~~q 137 (546)
.+|...|+..+..+.....| ..-+..+=.-|..+..+....+..+..+.++-.|+...+.....+.++....+..
T Consensus 178 ~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ 257 (312)
T smart00787 178 RDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAE 257 (312)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666665555433 2233334444444445555555555555555555555555554444444444444
Q ss_pred HHH
Q psy597 138 LEE 140 (546)
Q Consensus 138 lee 140 (546)
.+.
T Consensus 258 ae~ 260 (312)
T smart00787 258 AEK 260 (312)
T ss_pred HHH
Confidence 433
No 483
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=61.04 E-value=70 Score=26.38 Aligned_cols=62 Identities=21% Similarity=0.238 Sum_probs=42.7
Q ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy597 371 KEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQ 444 (546)
Q Consensus 371 ~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~ 444 (546)
.++|....++..++..+ ++ +...|.-.... +-....+..|...|..+...|++.+|.+.|+.
T Consensus 63 knD~RyLkiWi~ya~~~---~d---p~~if~~L~~~------~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 63 KNDPRYLKIWLKYADNC---DE---PRELFQFLYSK------GIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred cCCHHHHHHHHHHHHhc---CC---HHHHHHHHHHC------CcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 45677777877777654 33 44455544432 22455677788889999999999999988864
No 484
>KOG3024|consensus
Probab=60.72 E-value=1.6e+02 Score=28.11 Aligned_cols=105 Identities=16% Similarity=0.143 Sum_probs=55.5
Q ss_pred HHHHHHHHcCCHHHHH-HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------HHHhc
Q psy597 340 NLAVLYGKRGKYKEAE-PLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI-------YELKL 411 (546)
Q Consensus 340 ~la~~~~~~g~~~~A~-~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-------~~~~~ 411 (546)
+++.+....+.-+... .+.+++++...+. +......+..+..+|..++..+++.+|..+|-.+-+- ..-..
T Consensus 90 nl~~ll~e~~~~eper~~~v~raikWS~~~-~~~k~G~p~lH~~la~~l~~e~~~~~a~~HFll~~d~s~~a~~ll~y~~ 168 (312)
T KOG3024|consen 90 NLAELLGEADPSEPERKTFVRRAIKWSKEF-GEGKYGHPELHALLADKLWTEDNVEEARRHFLLSEDGSKFAYMLLEYSM 168 (312)
T ss_pred HHHHHHhhcCCCccHHHHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHHhcccHHHHHhHhhhcCChHHHHHHHHHHHh
Confidence 3344444443333333 4445555554332 2223455778889999999999999999988543211 00000
Q ss_pred C---CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 412 G---PDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 447 (546)
Q Consensus 412 ~---~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~ 447 (546)
+ ...|+ ..+.+...-|+-..+..-|...+..-++
T Consensus 169 ~r~f~~e~d--~f~~~aVlq~L~len~~~A~~s~t~yt~ 205 (312)
T KOG3024|consen 169 SRGFKSEPD--VFYVQAVLQYLCLENDSSAARSFTTYTS 205 (312)
T ss_pred hcccccCch--HHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 1 11222 2233333345556666777776666665
No 485
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=60.52 E-value=27 Score=30.58 Aligned_cols=52 Identities=29% Similarity=0.370 Sum_probs=29.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHH--HHHHHHhhhHHHHHHH
Q psy597 93 LQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKL--QSSEQANSQLEEEKKH 144 (546)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~l--~~~~~~~~qlee~~~~ 144 (546)
+..++.+...|+.++..|..++.-|+.+|+.+...+ .+....+.+++++...
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~ 127 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEE 127 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666666666666665544 3334444555555443
No 486
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=60.26 E-value=40 Score=23.11 Aligned_cols=35 Identities=11% Similarity=0.356 Sum_probs=22.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHH
Q psy597 94 QNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKL 128 (546)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~l 128 (546)
..+|.+..++...+..+..+|+.+++.+..+.++.
T Consensus 3 ~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 3 DELENELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667777777777777766666665555554
No 487
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=60.10 E-value=1.2e+02 Score=26.71 Aligned_cols=28 Identities=32% Similarity=0.376 Sum_probs=13.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhcHH
Q psy597 92 HLQNVEAEKQKLRTQVRRLVQENAWLRD 119 (546)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 119 (546)
.|+.-=.|++.|+...++|..+|+.||+
T Consensus 49 rlQ~hl~EIR~LKe~NqkLqedNqELRd 76 (195)
T PF10226_consen 49 RLQQHLNEIRGLKEVNQKLQEDNQELRD 76 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334445555555555555554443
No 488
>KOG0964|consensus
Probab=59.65 E-value=1.6e+02 Score=33.10 Aligned_cols=110 Identities=22% Similarity=0.267 Sum_probs=66.3
Q ss_pred hHHhhhhhHHHHHHHHhHhhhHHHHHhhhhhccCCCchHHH-------HHHHHhhHHHHHcCc--CHHHHHHHHHhhhhh
Q psy597 25 EEIMTNTKTVQQGLEALKNEHTSILNSLSETQHGGPVEEEK-------RNMVKNSLEIIELGL--NEAQVMTALAGHLQN 95 (546)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 95 (546)
+.++++...|.--..+.+.+|..+...+........-+++- ..-|+-++...+.+. .|+.+.+.|..||..
T Consensus 702 ~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~~l~~~~~~~~~~e~el~sel~sqLt~ 781 (1200)
T KOG0964|consen 702 DQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIKTSLHKLESQSNYFESELGSELFSQLTP 781 (1200)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhcCH
Confidence 45677777777778888888888888877654221111111 222333444444332 255566677777766
Q ss_pred HHHH-HHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHH
Q psy597 96 VEAE-KQKLRTQVRRLVQENAWLRDELANTQQKLQSSEQA 134 (546)
Q Consensus 96 ~~~~-~~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~~~ 134 (546)
=+.| ..+|..+|+.+.+++.-++.+-.....+....+..
T Consensus 782 ee~e~l~kLn~eI~~l~~kl~~~~~er~~~~~rk~~le~~ 821 (1200)
T KOG0964|consen 782 EELERLSKLNKEINKLSVKLRALREERIDIETRKTALEAN 821 (1200)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555 66888888888888876666555544444444433
No 489
>KOG4797|consensus
Probab=59.44 E-value=34 Score=26.77 Aligned_cols=38 Identities=34% Similarity=0.425 Sum_probs=27.6
Q ss_pred HHHHHHHhhhh-hHHHHHHHHHHHHHHHHHhhhhcHHHH
Q psy597 84 QVMTALAGHLQ-NVEAEKQKLRTQVRRLVQENAWLRDEL 121 (546)
Q Consensus 84 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l 121 (546)
|.|-.+-+||. +|..|+.-||.|++.|..-|.-|..|-
T Consensus 52 QAMDLVKtHLmfAVREEVe~Lk~qI~eL~er~~~Le~EN 90 (123)
T KOG4797|consen 52 QAMDLVKTHLMFAVREEVEVLKEQIRELEERNSALEREN 90 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666665 677788889999888888876555443
No 490
>KOG2396|consensus
Probab=58.75 E-value=1.1e+02 Score=31.72 Aligned_cols=50 Identities=18% Similarity=0.127 Sum_probs=22.5
Q ss_pred hcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHH
Q psy597 307 NKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGK-YKEAEPLCKRALEI 364 (546)
Q Consensus 307 g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~ 364 (546)
+.+.+--..|.+++.. ||..+..|..-|.-.+..+. .+.|...|.+++..
T Consensus 119 ~~~~~v~ki~~~~l~~--------Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~ 169 (568)
T KOG2396|consen 119 KTYGEVKKIFAAMLAK--------HPNNPDLWIYAAKWEFEINLNIESARALFLRGLRF 169 (568)
T ss_pred cchhHHHHHHHHHHHh--------CCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhc
Confidence 3344444444444444 33334444444444333333 45555555555544
No 491
>smart00338 BRLZ basic region leucin zipper.
Probab=58.61 E-value=31 Score=24.54 Aligned_cols=34 Identities=26% Similarity=0.440 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHH
Q psy597 99 EKQKLRTQVRRLVQENAWLRDELANTQQKLQSSE 132 (546)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~ 132 (546)
..+.|..+|..|..+|.+|+.++..+...+....
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk 60 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRELEKLK 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666666555554443
No 492
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=58.36 E-value=58 Score=24.42 Aligned_cols=41 Identities=29% Similarity=0.520 Sum_probs=25.6
Q ss_pred HHHHHHHHhhHHHHHcCcCHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q psy597 63 EEKRNMVKNSLEIIELGLNEAQVMTALAGHLQNVEAEKQKLRTQVRRL 110 (546)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (546)
++|..++++.++.. ..+.+|.+.+..|+.|..||+.+.+-|
T Consensus 16 e~k~~Li~ei~~LQ-------~sL~~L~~Rve~Vk~E~~kL~~EN~~L 56 (80)
T PF10224_consen 16 EEKEELIQEILELQ-------DSLEALSDRVEEVKEENEKLESENEYL 56 (80)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666555544 456677778877777777766543333
No 493
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=58.33 E-value=1.3e+02 Score=27.15 Aligned_cols=71 Identities=18% Similarity=0.369 Sum_probs=52.1
Q ss_pred HHHHhhHHHHHcCcCHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q psy597 67 NMVKNSLEIIELGLNEAQVMTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSSEQANSQLEEEKKHLE 146 (546)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~~~~~qlee~~~~l~ 146 (546)
++..++|+.|- .|-.-+..+...-.+.+..+..+.++|.-|.+-|...+.........+.+++..+..+.
T Consensus 20 dIT~~NL~lIk----------sLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~ 89 (201)
T PF13851_consen 20 DITLNNLELIK----------SLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQ 89 (201)
T ss_pred HHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666663 36666667777777777788888888888888888888888888888888887766553
Q ss_pred H
Q psy597 147 F 147 (546)
Q Consensus 147 ~ 147 (546)
-
T Consensus 90 ~ 90 (201)
T PF13851_consen 90 N 90 (201)
T ss_pred H
Confidence 3
No 494
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=58.32 E-value=6.1 Score=33.06 Aligned_cols=102 Identities=22% Similarity=0.366 Sum_probs=23.3
Q ss_pred cCChhHHhhhhhHHHHHHHHhHhhhHHHHHhhhhhccCCCchHHHHHHHHhhHHHHHcCcCHHHHHHHHHhhhhhHHHHH
Q psy597 21 VMNQEEIMTNTKTVQQGLEALKNEHTSILNSLSETQHGGPVEEEKRNMVKNSLEIIELGLNEAQVMTALAGHLQNVEAEK 100 (546)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (546)
.++.++.+.. ..=-..||.|+++-.+.+..|...+ ..+|++.-+ =...|+++|..++...
T Consensus 12 ~Fd~d~Fl~~-~~~~~~Le~L~~dL~~~~~~L~~~L---------i~lIN~dY~----------dFv~Ls~~L~g~~~~i 71 (133)
T PF06148_consen 12 DFDVDEFLSS-NRRYVSLEDLRKDLRSYSKELKNEL---------IELINDDYA----------DFVSLSTNLVGMDEKI 71 (133)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCHHHHHHH-ccCCCCHHHHHHHHHHHHHHHHHHH---------HHHHHhhHH----------HHHHHHHHHccHHHHH
Confidence 4667777777 5556789999999888887776643 223333222 2345778888888888
Q ss_pred HHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy597 101 QKLRTQVRRLVQENAWLRDELANTQQKLQSSEQANSQLEEEK 142 (546)
Q Consensus 101 ~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~~~~~qlee~~ 142 (546)
+.++..+..+..+-.-.+.++..+...+...-.....+.+.+
T Consensus 72 ~~l~~~L~~~~~~v~~~~~~l~~~~~~i~~~l~~~~~l~~~k 113 (133)
T PF06148_consen 72 EELRKPLSQFREEVESVRDELDNTQEEIEDKLEERKELREEK 113 (133)
T ss_dssp --HHHHHHHHHHHHHHHHHS-STTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888877777777766666666555555554444444444443
No 495
>KOG4279|consensus
Probab=58.27 E-value=57 Score=35.22 Aligned_cols=189 Identities=12% Similarity=0.063 Sum_probs=100.7
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH---HHHHHHHHHH---HcCCHHHH
Q psy597 323 REKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAK---QLNNLALLCQ---NQSKYEEV 396 (546)
Q Consensus 323 ~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~---~~~~la~~~~---~~g~~~eA 396 (546)
.++.+++.+...+++..++-..|....+|+.-+++.+..-.+ ++.-..+. ..+..+.++. .-|+-++|
T Consensus 189 mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i------P~t~~vve~~nv~f~YaFALNRRNr~GDRakA 262 (1226)
T KOG4279|consen 189 MRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI------PDTLKVVETHNVRFHYAFALNRRNRPGDRAKA 262 (1226)
T ss_pred HHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC------cchhhhhccCceEEEeeehhcccCCCccHHHH
Confidence 333333334445677778888899999999888877765544 11111111 1122233333 35777778
Q ss_pred HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHH
Q psy597 397 ERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK---------QGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQD 467 (546)
Q Consensus 397 ~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~---------~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 467 (546)
+...-.+++. . .+..++.+..-|++|.. .+..+.|+.+|+++++..|.. ....+.+...
T Consensus 263 L~~~l~lve~---e----g~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~-----~sGIN~atLL 330 (1226)
T KOG4279|consen 263 LNTVLPLVEK---E----GPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLE-----YSGINLATLL 330 (1226)
T ss_pred HHHHHHHHHh---c----CCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchh-----hccccHHHHH
Confidence 7777766664 1 33344455666666643 356788999999999875543 2223334444
Q ss_pred Hhhch-hhHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHHhh
Q psy597 468 RQKNK-AKNREKYYQRALEIYELKLG-PDDSNVAKTKNNLASCY---LKQGKYKEAEILYKQVLTRAH 530 (546)
Q Consensus 468 ~~~~~-~~~A~~~~~~Al~~~~~~~~-~~~~~~~~~~~~La~~y---~~~g~~~~A~~~~~~al~~~~ 530 (546)
...|. ++...+.-.-++. ....++ ...-.....|...|-.+ .-.++|.+|+..-+..+++.+
T Consensus 331 ~aaG~~Fens~Elq~Igmk-Ln~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~ 397 (1226)
T KOG4279|consen 331 RAAGEHFENSLELQQIGMK-LNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKP 397 (1226)
T ss_pred HHhhhhccchHHHHHHHHH-HHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCC
Confidence 44443 2222222222221 222222 11222233333333322 235788888888888777654
No 496
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=58.07 E-value=27 Score=20.44 Aligned_cols=28 Identities=25% Similarity=0.261 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 420 KTKNNLASCYLKQGKYKEAEILYKQVLT 447 (546)
Q Consensus 420 ~~~~~La~~y~~~g~~~eA~~~~~~al~ 447 (546)
.+|..+..++.+.|+++.|..+|+...+
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3578888999999999999999988765
No 497
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.80 E-value=1.9e+02 Score=28.29 Aligned_cols=89 Identities=13% Similarity=0.066 Sum_probs=51.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchh----HHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHH
Q psy597 219 HNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYE----AAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVAT 294 (546)
Q Consensus 219 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 294 (546)
..-|.+++..|+|.++...+..+-..++...+... .|......++...-... ++..-....
T Consensus 62 L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vNDNi~~Y---------------~g~~YE~~~ 126 (449)
T COG3014 62 LQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMINDNVRAY---------------GGNIYEGVL 126 (449)
T ss_pred hhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhccchhhc---------------CchhHHHHH
Confidence 55788899999999998888766554443221100 01111111111110000 233344566
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q psy597 295 MLNILALVYRDQNKYKEAANLLNDALTI 322 (546)
Q Consensus 295 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 322 (546)
+.+.+|.-|...++++.|.--|+++...
T Consensus 127 ~n~YkaLNYm~~nD~~~ArVEfnRan~r 154 (449)
T COG3014 127 INYYKALNYMLLNDSAKARVEFNRANER 154 (449)
T ss_pred HHHHHHhhHHHhcchhhhHHHHHHHHHH
Confidence 6777888888888888888888887765
No 498
>KOG2063|consensus
Probab=57.46 E-value=3.3e+02 Score=30.78 Aligned_cols=96 Identities=21% Similarity=0.104 Sum_probs=56.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH--------cCCHHHHHHH--HHHHHHHHHHhcCC
Q psy597 344 LYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQN--------QSKYEEVERY--YQRALEIYELKLGP 413 (546)
Q Consensus 344 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--------~g~~~eA~~~--~~~al~~~~~~~~~ 413 (546)
-|......+-++.|++.++...+. .....+..++..|.. .++-+++.+. .++.....+.. ..
T Consensus 600 ~~l~~~~~~l~I~YLE~li~~~~~-------~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~l~~s-~~ 671 (877)
T KOG2063|consen 600 NYLKSKEPKLLIPYLEHLISDNRL-------TSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDFLESS-DL 671 (877)
T ss_pred HHhhhhCcchhHHHHHHHhHhccc-------cchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHHhhhh-cc
Confidence 356677888999999999877522 122223333333322 2333455555 33333332221 11
Q ss_pred CCh-------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 414 DDS-------NVAKTKNNLASCYLKQGKYKEAEILYKQVLT 447 (546)
Q Consensus 414 ~~~-------~~~~~~~~La~~y~~~g~~~eA~~~~~~al~ 447 (546)
-+| .....|...+.++.+.|+.++|+..|-..+.
T Consensus 672 Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 672 YDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred cCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 111 1245677788889999999999999988776
No 499
>KOG1029|consensus
Probab=57.40 E-value=1.2e+02 Score=33.09 Aligned_cols=105 Identities=20% Similarity=0.323 Sum_probs=58.5
Q ss_pred hhhHHHHHHHHhHhhhHHHHHhhhhhccCCCchHHHHHHHHhhHHHHHcCcCHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q psy597 30 NTKTVQQGLEALKNEHTSILNSLSETQHGGPVEEEKRNMVKNSLEIIELGLNEAQVMTALAGHLQNVEAEKQKLRTQVRR 109 (546)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (546)
..++..+.|++|...|..+-.-|..+--+-.-.++-..-+.++.|.- -.-+..+.++.+.++.-+-+
T Consensus 438 k~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~-------------isei~qlqarikE~q~kl~~ 504 (1118)
T KOG1029|consen 438 KKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELM-------------ISEIDQLQARIKELQEKLQK 504 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHH-------------HHHHHHHHHHHHHHHHHHHh
Confidence 45677788888888888777776654222111122222222222211 12233445566666666667
Q ss_pred HHHhhhhcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q psy597 110 LVQENAWLRDELANTQQKLQSSEQANSQLEEEKKHLEF 147 (546)
Q Consensus 110 ~~~~~~~l~~~la~~~~~l~~~~~~~~qlee~~~~l~~ 147 (546)
|..|-+-|.+.|...|.....-.+.+.+|+.+..+-+.
T Consensus 505 l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~ 542 (1118)
T KOG1029|consen 505 LAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKEL 542 (1118)
T ss_pred hhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHH
Confidence 77777777777776666665555555666655554433
No 500
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=57.15 E-value=41 Score=29.83 Aligned_cols=48 Identities=48% Similarity=0.710 Sum_probs=40.2
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHH
Q psy597 329 ENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDV 376 (546)
Q Consensus 329 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 376 (546)
...|.....+.++..-|...|+|.-|+..++.+++-..+..|.++|+.
T Consensus 134 ~E~~~rl~tL~nlv~q~~~q~r~evav~~~KqalEdl~~~~~~~~~~v 181 (181)
T PF09311_consen 134 YEIPARLRTLHNLVIQYESQGRYEVAVPLCKQALEDLEKESGHKHPDV 181 (181)
T ss_dssp TTS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHH-SSSHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCC
Confidence 446777889999999999999999999999999999999988888863
Done!