Query psy597
Match_columns 546
No_of_seqs 1034 out of 2429
Neff 10.0
Searched_HMMs 29240
Date Fri Aug 16 23:15:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy597.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/597hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nf1_A KLC 1, kinesin light ch 100.0 3.3E-26 1.1E-30 223.1 33.7 284 204-531 16-310 (311)
2 3edt_B KLC 2, kinesin light ch 99.9 3E-24 1E-28 205.9 30.9 268 225-529 11-282 (283)
3 4a1s_A PINS, partner of inscut 99.9 4.9E-24 1.7E-28 216.8 33.2 314 211-532 44-376 (411)
4 3sf4_A G-protein-signaling mod 99.9 7.6E-24 2.6E-28 214.5 31.6 311 214-532 8-340 (406)
5 3ro2_A PINS homolog, G-protein 99.9 1.5E-23 5.1E-28 205.9 31.4 308 215-532 5-336 (338)
6 3ulq_A Response regulator aspa 99.9 7.2E-24 2.5E-28 213.9 29.2 268 217-534 105-374 (383)
7 1w3b_A UDP-N-acetylglucosamine 99.9 3.3E-24 1.1E-28 216.6 19.0 291 205-531 57-371 (388)
8 3q15_A PSP28, response regulat 99.9 3E-22 1E-26 201.7 30.1 268 215-533 101-370 (378)
9 3sf4_A G-protein-signaling mod 99.9 1.2E-21 4.2E-26 198.1 31.8 296 214-517 46-365 (406)
10 4eqf_A PEX5-related protein; a 99.9 3.5E-23 1.2E-27 207.1 19.9 249 213-533 63-315 (365)
11 1w3b_A UDP-N-acetylglucosamine 99.9 7.4E-23 2.5E-27 206.7 21.9 287 200-532 18-304 (388)
12 2pl2_A Hypothetical conserved 99.9 4.6E-23 1.6E-27 190.7 18.2 200 212-526 2-212 (217)
13 2y4t_A DNAJ homolog subfamily 99.9 4.8E-22 1.6E-26 204.6 25.6 296 205-532 16-362 (450)
14 3ieg_A DNAJ homolog subfamily 99.9 9.1E-22 3.1E-26 195.4 26.2 294 200-532 22-339 (359)
15 3uq3_A Heat shock protein STI1 99.9 2.5E-21 8.7E-26 182.9 27.7 241 212-534 2-242 (258)
16 3hym_B Cell division cycle pro 99.9 6.9E-23 2.4E-27 201.2 16.7 279 212-532 19-303 (330)
17 3u4t_A TPR repeat-containing p 99.9 1E-22 3.5E-27 194.6 17.4 251 215-534 3-256 (272)
18 2h6f_A Protein farnesyltransfe 99.9 2.9E-22 9.8E-27 200.7 17.9 244 208-532 90-352 (382)
19 2xpi_A Anaphase-promoting comp 99.9 2.6E-21 8.9E-26 206.7 26.2 280 212-533 302-584 (597)
20 3nf1_A KLC 1, kinesin light ch 99.9 3.6E-20 1.2E-24 180.1 29.6 218 286-541 20-237 (311)
21 4eqf_A PEX5-related protein; a 99.9 7.7E-22 2.6E-26 197.4 17.5 269 198-530 82-358 (365)
22 1fch_A Peroxisomal targeting s 99.9 2.3E-21 7.7E-26 193.8 20.5 237 215-532 64-318 (368)
23 3hym_B Cell division cycle pro 99.9 1.4E-21 4.9E-26 191.8 18.3 214 290-531 53-268 (330)
24 3fp2_A TPR repeat-containing p 99.9 1.3E-20 4.4E-25 198.4 26.6 241 215-532 243-495 (537)
25 3edt_B KLC 2, kinesin light ch 99.9 8.2E-20 2.8E-24 174.7 29.6 205 208-448 36-281 (283)
26 1fch_A Peroxisomal targeting s 99.9 1.2E-21 4.2E-26 195.8 16.9 271 197-532 80-363 (368)
27 3ieg_A DNAJ homolog subfamily 99.9 2.2E-20 7.6E-25 185.3 25.9 242 214-532 2-267 (359)
28 4a1s_A PINS, partner of inscut 99.9 6.4E-20 2.2E-24 186.3 29.2 273 231-532 45-336 (411)
29 3ulq_A Response regulator aspa 99.9 1.2E-19 4.2E-24 182.8 30.6 302 212-525 9-332 (383)
30 3cv0_A Peroxisome targeting si 99.9 1.9E-21 6.5E-26 190.7 15.0 280 215-532 21-319 (327)
31 3ro2_A PINS homolog, G-protein 99.9 1.7E-19 5.8E-24 176.9 29.0 237 288-532 38-296 (338)
32 3cv0_A Peroxisome targeting si 99.9 6.5E-21 2.2E-25 186.8 18.3 207 290-532 52-273 (327)
33 2q7f_A YRRB protein; TPR, prot 99.9 1.6E-20 5.6E-25 175.9 17.8 208 212-533 20-227 (243)
34 3fp2_A TPR repeat-containing p 99.9 8.5E-20 2.9E-24 192.1 25.3 194 307-534 216-413 (537)
35 2ho1_A Type 4 fimbrial biogene 99.9 9.1E-20 3.1E-24 172.0 23.0 212 210-533 31-243 (252)
36 2gw1_A Mitochondrial precursor 99.9 1.3E-20 4.4E-25 197.0 18.8 245 212-533 234-483 (514)
37 3vtx_A MAMA; tetratricopeptide 99.8 7E-20 2.4E-24 164.3 20.7 172 292-533 4-175 (184)
38 2xpi_A Anaphase-promoting comp 99.8 2.8E-19 9.6E-24 190.9 28.2 286 210-532 195-508 (597)
39 1qqe_A Vesicular transport pro 99.8 1.3E-19 4.5E-24 175.5 22.3 196 212-451 34-231 (292)
40 1hz4_A MALT regulatory protein 99.8 8.9E-19 3E-23 175.7 29.2 276 214-535 52-329 (373)
41 4g1t_A Interferon-induced prot 99.8 2.8E-19 9.5E-24 185.2 26.3 287 122-530 51-365 (472)
42 2vq2_A PILW, putative fimbrial 99.8 3E-19 1E-23 164.9 23.6 212 210-532 3-215 (225)
43 1ouv_A Conserved hypothetical 99.8 2.3E-19 7.7E-24 171.9 23.1 229 212-532 3-255 (273)
44 2gw1_A Mitochondrial precursor 99.8 1.7E-18 5.8E-23 180.9 31.2 359 120-533 4-406 (514)
45 3vtx_A MAMA; tetratricopeptide 99.8 1.4E-19 4.7E-24 162.3 19.7 172 213-452 3-174 (184)
46 1hz4_A MALT regulatory protein 99.8 1.6E-18 5.5E-23 173.8 28.6 272 213-532 12-286 (373)
47 4g1t_A Interferon-induced prot 99.8 3.3E-19 1.1E-23 184.6 22.2 259 211-532 47-333 (472)
48 4gyw_A UDP-N-acetylglucosamine 99.8 1.9E-19 6.5E-24 194.1 20.7 177 288-534 4-180 (723)
49 3q15_A PSP28, response regulat 99.8 2.7E-18 9.1E-23 172.7 27.8 301 214-524 11-328 (378)
50 4gyw_A UDP-N-acetylglucosamine 99.8 2.1E-19 7.3E-24 193.7 19.6 174 210-451 4-177 (723)
51 2pl2_A Hypothetical conserved 99.8 2.3E-19 8E-24 165.7 17.1 171 291-532 3-184 (217)
52 2y4t_A DNAJ homolog subfamily 99.8 2E-19 6.9E-24 184.9 17.6 304 200-533 45-415 (450)
53 1xnf_A Lipoprotein NLPI; TPR, 99.8 1.4E-19 4.8E-24 172.8 15.1 234 224-531 14-247 (275)
54 2ifu_A Gamma-SNAP; membrane fu 99.8 2.3E-18 8E-23 168.0 23.0 249 227-520 3-253 (307)
55 4abn_A Tetratricopeptide repea 99.8 1.8E-19 6.2E-24 186.8 15.5 205 205-524 92-317 (474)
56 2ifu_A Gamma-SNAP; membrane fu 99.8 1.8E-17 6E-22 161.7 27.6 194 212-451 33-226 (307)
57 3mkr_A Coatomer subunit epsilo 99.8 4E-18 1.4E-22 164.7 22.5 249 200-534 18-270 (291)
58 3qky_A Outer membrane assembly 99.8 2.3E-18 8E-23 163.7 20.4 184 211-450 11-226 (261)
59 2h6f_A Protein farnesyltransfe 99.8 6.3E-19 2.1E-23 176.4 16.9 235 197-512 113-366 (382)
60 3u4t_A TPR repeat-containing p 99.8 2.7E-19 9.3E-24 170.7 13.2 242 199-513 21-269 (272)
61 1qqe_A Vesicular transport pro 99.8 1.5E-17 5.1E-22 161.0 24.0 225 291-529 35-263 (292)
62 3uq3_A Heat shock protein STI1 99.8 2.3E-17 7.8E-22 155.6 23.2 221 213-508 36-256 (258)
63 4i17_A Hypothetical protein; T 99.8 6.6E-18 2.2E-22 157.0 18.3 212 215-509 7-224 (228)
64 4i17_A Hypothetical protein; T 99.8 1.1E-17 3.7E-22 155.5 18.6 199 293-533 7-214 (228)
65 3n71_A Histone lysine methyltr 99.8 3.7E-17 1.3E-21 167.9 22.0 153 297-449 313-465 (490)
66 4abn_A Tetratricopeptide repea 99.8 2E-17 6.9E-22 171.3 19.4 175 288-533 97-292 (474)
67 1xnf_A Lipoprotein NLPI; TPR, 99.8 6E-18 2.1E-22 161.4 14.0 231 211-522 39-269 (275)
68 3qky_A Outer membrane assembly 99.8 2E-17 7E-22 157.1 17.3 188 288-533 10-229 (261)
69 2q7f_A YRRB protein; TPR, prot 99.7 4.6E-17 1.6E-21 152.2 17.6 180 203-450 45-224 (243)
70 2qfc_A PLCR protein; TPR, HTH, 99.7 1.5E-16 5.2E-21 153.9 20.4 197 211-451 71-269 (293)
71 3as5_A MAMA; tetratricopeptide 99.7 1.3E-16 4.3E-21 142.1 18.1 177 288-534 3-179 (186)
72 3as5_A MAMA; tetratricopeptide 99.7 1.7E-16 5.6E-21 141.3 18.7 174 212-453 5-178 (186)
73 2vq2_A PILW, putative fimbrial 99.7 3.1E-16 1E-20 144.5 20.9 175 288-530 3-178 (225)
74 3gw4_A Uncharacterized protein 99.7 1.5E-15 5E-20 137.8 24.2 159 288-451 21-179 (203)
75 3n71_A Histone lysine methyltr 99.7 2.9E-16 9.8E-21 161.3 21.6 153 219-407 313-465 (490)
76 3u3w_A Transcriptional activat 99.7 4.7E-16 1.6E-20 150.5 20.8 195 212-452 72-270 (293)
77 3mkr_A Coatomer subunit epsilo 99.7 5.7E-16 1.9E-20 149.6 21.1 225 211-522 61-288 (291)
78 3urz_A Uncharacterized protein 99.7 2.9E-16 9.8E-21 143.8 17.8 169 293-532 4-190 (208)
79 2yhc_A BAMD, UPF0169 lipoprote 99.7 1.5E-15 5E-20 140.9 22.2 181 215-451 4-216 (225)
80 2pzi_A Probable serine/threoni 99.7 6.5E-17 2.2E-21 175.0 14.5 176 209-448 388-563 (681)
81 2ond_A Cleavage stimulation fa 99.7 5.5E-16 1.9E-20 151.2 19.3 211 289-532 46-274 (308)
82 2yhc_A BAMD, UPF0169 lipoprote 99.7 9.6E-16 3.3E-20 142.2 20.1 183 293-533 4-218 (225)
83 3gw4_A Uncharacterized protein 99.7 3.3E-15 1.1E-19 135.4 21.9 174 212-429 23-197 (203)
84 2qfc_A PLCR protein; TPR, HTH, 99.7 1.1E-15 3.8E-20 147.9 19.7 197 290-532 72-270 (293)
85 4ga2_A E3 SUMO-protein ligase 99.7 1.6E-16 5.5E-21 137.3 12.3 127 298-448 2-129 (150)
86 2ho1_A Type 4 fimbrial biogene 99.7 7.6E-16 2.6E-20 145.0 17.8 188 199-452 55-242 (252)
87 3ro3_A PINS homolog, G-protein 99.7 5.1E-15 1.8E-19 128.4 21.8 158 288-451 4-161 (164)
88 3urz_A Uncharacterized protein 99.7 7E-16 2.4E-20 141.2 16.8 184 215-451 4-189 (208)
89 3u3w_A Transcriptional activat 99.7 2.2E-15 7.6E-20 145.7 20.4 196 290-533 72-271 (293)
90 4ga2_A E3 SUMO-protein ligase 99.7 9.2E-17 3.2E-21 138.8 9.4 147 220-434 2-149 (150)
91 3ro3_A PINS homolog, G-protein 99.7 7.4E-15 2.5E-19 127.3 21.1 158 210-409 4-161 (164)
92 1ouv_A Conserved hypothetical 99.7 3.2E-15 1.1E-19 142.7 20.1 195 290-530 3-217 (273)
93 4b4t_Q 26S proteasome regulato 99.7 4.2E-15 1.5E-19 151.9 20.3 243 217-531 6-248 (434)
94 2xm6_A Protein corresponding t 99.6 5.2E-14 1.8E-18 146.5 25.2 258 212-529 36-326 (490)
95 2xm6_A Protein corresponding t 99.6 3.6E-14 1.2E-18 147.7 23.6 256 214-529 146-433 (490)
96 3qww_A SET and MYND domain-con 99.6 1.7E-14 5.8E-19 145.8 19.1 122 305-426 310-431 (433)
97 4gco_A Protein STI-1; structur 99.6 1.3E-14 4.3E-19 121.2 14.0 118 288-429 8-125 (126)
98 2ond_A Cleavage stimulation fa 99.6 7.9E-15 2.7E-19 142.9 14.2 220 202-487 37-271 (308)
99 3qwp_A SET and MYND domain-con 99.6 2.2E-14 7.5E-19 145.3 17.3 133 300-432 294-426 (429)
100 4gco_A Protein STI-1; structur 99.6 2.4E-14 8.3E-19 119.4 14.6 104 331-450 9-112 (126)
101 3qou_A Protein YBBN; thioredox 99.6 3.6E-14 1.2E-18 136.7 15.1 169 290-528 114-284 (287)
102 2pzi_A Probable serine/threoni 99.6 4.6E-15 1.6E-19 160.4 9.8 173 209-450 427-600 (681)
103 2r5s_A Uncharacterized protein 99.6 8.7E-15 3E-19 130.0 9.9 167 293-528 6-173 (176)
104 3qou_A Protein YBBN; thioredox 99.6 3.2E-14 1.1E-18 137.0 14.3 169 212-448 114-284 (287)
105 2r5s_A Uncharacterized protein 99.6 6.1E-15 2.1E-19 131.0 8.3 167 213-448 4-173 (176)
106 3rjv_A Putative SEL1 repeat pr 99.5 1.7E-13 5.9E-18 125.6 18.0 165 291-529 16-198 (212)
107 3qww_A SET and MYND domain-con 99.5 1.5E-13 5E-18 138.9 19.0 123 226-384 309-431 (433)
108 3gyz_A Chaperone protein IPGC; 99.5 1.1E-14 3.8E-19 125.3 9.1 105 331-451 32-136 (151)
109 4b4t_Q 26S proteasome regulato 99.5 1.8E-12 6.2E-17 132.2 26.1 197 212-452 52-249 (434)
110 3gyz_A Chaperone protein IPGC; 99.5 1.1E-14 3.9E-19 125.3 7.8 107 373-533 32-138 (151)
111 3qwp_A SET and MYND domain-con 99.5 1.9E-13 6.7E-18 138.3 17.8 138 217-390 289-426 (429)
112 1p5q_A FKBP52, FK506-binding p 99.5 2.2E-14 7.5E-19 141.5 9.8 167 305-533 125-299 (336)
113 2vsy_A XCC0866; transferase, g 99.5 1E-13 3.5E-18 147.0 15.5 153 306-486 2-157 (568)
114 2vsy_A XCC0866; transferase, g 99.5 1.4E-13 4.8E-18 146.0 15.8 156 228-451 2-160 (568)
115 2ooe_A Cleavage stimulation fa 99.5 2.9E-13 9.8E-18 142.3 17.5 169 334-530 271-456 (530)
116 4f3v_A ESX-1 secretion system 99.5 1.7E-13 5.7E-18 128.9 13.8 214 213-531 5-240 (282)
117 4gcn_A Protein STI-1; structur 99.5 5.1E-13 1.8E-17 111.5 14.7 111 374-531 5-115 (127)
118 1p5q_A FKBP52, FK506-binding p 99.5 5.1E-14 1.7E-18 138.8 9.8 146 289-450 143-296 (336)
119 2fo7_A Synthetic consensus TPR 99.5 1.1E-12 3.6E-17 109.6 16.2 134 336-531 2-135 (136)
120 2fo7_A Synthetic consensus TPR 99.5 1.3E-12 4.3E-17 109.1 16.4 133 294-450 2-134 (136)
121 3rjv_A Putative SEL1 repeat pr 99.5 7.6E-13 2.6E-17 121.2 16.0 164 213-448 16-197 (212)
122 3dra_A Protein farnesyltransfe 99.5 1.7E-12 5.8E-17 124.8 18.3 234 217-527 34-286 (306)
123 4gcn_A Protein STI-1; structur 99.5 2.7E-12 9.2E-17 107.1 16.8 108 290-406 5-112 (127)
124 2vgx_A Chaperone SYCD; alterna 99.4 3.9E-13 1.3E-17 115.5 10.8 116 355-532 7-122 (148)
125 3e4b_A ALGK; tetratricopeptide 99.4 2.2E-12 7.4E-17 132.6 18.1 188 295-529 178-388 (452)
126 2vgx_A Chaperone SYCD; alterna 99.4 4.7E-13 1.6E-17 115.0 10.9 115 314-452 8-122 (148)
127 1a17_A Serine/threonine protei 99.4 5.6E-12 1.9E-16 109.8 18.0 142 333-534 11-152 (166)
128 1a17_A Serine/threonine protei 99.4 4.9E-12 1.7E-16 110.2 17.2 139 290-452 10-150 (166)
129 1hh8_A P67PHOX, NCF-2, neutrop 99.4 2E-12 6.8E-17 118.1 14.9 149 335-532 6-154 (213)
130 2ooe_A Cleavage stimulation fa 99.4 1.5E-12 5.2E-17 136.8 16.0 221 203-532 260-496 (530)
131 3upv_A Heat shock protein STI1 99.4 4.7E-12 1.6E-16 105.2 15.0 123 291-431 2-124 (126)
132 3e4b_A ALGK; tetratricopeptide 99.4 1.4E-12 4.6E-17 134.1 14.0 256 214-528 68-351 (452)
133 2fbn_A 70 kDa peptidylprolyl i 99.4 3E-13 1E-17 122.4 7.8 141 289-447 34-185 (198)
134 1hh8_A P67PHOX, NCF-2, neutrop 99.4 2.1E-12 7.3E-17 117.9 12.8 141 292-451 5-153 (213)
135 3upv_A Heat shock protein STI1 99.4 8.1E-12 2.8E-16 103.8 15.2 103 333-451 2-104 (126)
136 2fbn_A 70 kDa peptidylprolyl i 99.4 5.8E-13 2E-17 120.5 8.3 131 297-448 8-151 (198)
137 3dss_A Geranylgeranyl transfer 99.4 1.3E-10 4.5E-15 112.3 24.8 204 288-532 59-308 (331)
138 2lni_A Stress-induced-phosphop 99.4 6.2E-12 2.1E-16 105.0 13.3 125 286-434 9-133 (133)
139 2c2l_A CHIP, carboxy terminus 99.4 1.4E-12 4.7E-17 125.1 10.5 166 335-528 4-199 (281)
140 1xi4_A Clathrin heavy chain; a 99.4 6.4E-11 2.2E-15 130.9 24.6 237 221-530 1055-1311(1630)
141 2vyi_A SGTA protein; chaperone 99.4 9.3E-12 3.2E-16 103.3 14.0 124 288-435 7-130 (131)
142 2hr2_A Hypothetical protein; a 99.4 2.7E-11 9.1E-16 103.2 16.2 119 334-453 10-136 (159)
143 1kt0_A FKBP51, 51 kDa FK506-bi 99.4 1E-12 3.6E-17 135.1 8.9 128 305-448 246-380 (457)
144 2lni_A Stress-induced-phosphop 99.3 9.2E-12 3.2E-16 103.9 13.0 104 329-448 10-113 (133)
145 2hr2_A Hypothetical protein; a 99.3 9.2E-12 3.1E-16 106.0 12.7 119 376-533 10-136 (159)
146 2xcb_A PCRH, regulatory protei 99.3 1.4E-11 4.8E-16 104.9 13.9 106 331-452 14-119 (142)
147 3rkv_A Putative peptidylprolyl 99.3 1.2E-11 4.1E-16 107.9 13.7 131 288-434 6-147 (162)
148 2xcb_A PCRH, regulatory protei 99.3 9.8E-12 3.4E-16 105.8 12.7 106 286-407 11-116 (142)
149 2vyi_A SGTA protein; chaperone 99.3 2E-11 7E-16 101.2 14.4 103 330-448 7-109 (131)
150 3sz7_A HSC70 cochaperone (SGT) 99.3 1.2E-11 4.3E-16 108.0 13.2 104 287-406 5-108 (164)
151 3sz7_A HSC70 cochaperone (SGT) 99.3 2.1E-11 7.2E-16 106.5 13.9 107 330-452 6-112 (164)
152 1kt0_A FKBP51, 51 kDa FK506-bi 99.3 1.7E-12 6E-17 133.4 7.8 144 289-448 264-415 (457)
153 3rkv_A Putative peptidylprolyl 99.3 3.1E-11 1E-15 105.2 14.6 112 332-451 8-129 (162)
154 2c2l_A CHIP, carboxy terminus 99.3 3.7E-12 1.3E-16 122.1 8.7 174 213-448 2-199 (281)
155 2e2e_A Formate-dependent nitri 99.3 9.1E-12 3.1E-16 110.2 10.6 126 303-452 20-148 (177)
156 3dra_A Protein farnesyltransfe 99.3 3.6E-11 1.2E-15 115.6 15.3 234 197-507 49-301 (306)
157 4f3v_A ESX-1 secretion system 99.3 4.7E-12 1.6E-16 119.0 8.3 210 196-451 21-240 (282)
158 2e2e_A Formate-dependent nitri 99.3 9.6E-12 3.3E-16 110.1 9.9 126 345-532 20-148 (177)
159 1na0_A Designed protein CTPR3; 99.3 8.9E-11 3E-15 96.4 14.9 120 290-433 6-125 (125)
160 3q49_B STIP1 homology and U bo 99.3 4.5E-11 1.5E-15 100.6 12.4 105 289-409 5-109 (137)
161 1na0_A Designed protein CTPR3; 99.3 1.2E-10 4E-15 95.7 14.6 99 334-448 8-106 (125)
162 1xi4_A Clathrin heavy chain; a 99.3 6.8E-10 2.3E-14 122.8 24.6 251 213-524 1103-1380(1630)
163 1b89_A Protein (clathrin heavy 99.2 1.6E-12 5.3E-17 129.3 2.9 206 215-529 32-237 (449)
164 1elr_A TPR2A-domain of HOP; HO 99.2 1.4E-10 4.7E-15 96.2 13.8 125 291-433 2-126 (131)
165 1hxi_A PEX5, peroxisome target 99.2 4.7E-11 1.6E-15 98.5 10.8 100 336-451 18-117 (121)
166 3q49_B STIP1 homology and U bo 99.2 8.4E-11 2.9E-15 98.9 12.4 105 332-452 6-110 (137)
167 3q7a_A Farnesyltransferase alp 99.2 2.5E-10 8.4E-15 110.9 16.5 240 211-527 50-330 (349)
168 1ihg_A Cyclophilin 40; ppiase 99.2 1.5E-10 5.3E-15 115.2 15.4 135 291-441 221-363 (370)
169 2xev_A YBGF; tetratricopeptide 99.2 2.1E-10 7.3E-15 95.2 13.8 102 295-406 4-105 (129)
170 1hxi_A PEX5, peroxisome target 99.2 7.7E-11 2.6E-15 97.2 10.5 100 378-531 18-117 (121)
171 1elw_A TPR1-domain of HOP; HOP 99.2 2.1E-10 7E-15 93.1 12.9 114 292-429 3-116 (118)
172 2if4_A ATFKBP42; FKBP-like, al 99.2 2.9E-11 9.9E-16 119.1 8.8 140 332-533 176-333 (338)
173 1wao_1 Serine/threonine protei 99.2 4.4E-12 1.5E-16 131.0 2.4 180 212-451 3-200 (477)
174 2xev_A YBGF; tetratricopeptide 99.2 6.2E-10 2.1E-14 92.4 15.1 104 216-365 3-106 (129)
175 3dss_A Geranylgeranyl transfer 99.2 7E-10 2.4E-14 107.2 17.5 230 198-509 47-319 (331)
176 1elw_A TPR1-domain of HOP; HOP 99.2 5.5E-10 1.9E-14 90.5 14.5 99 335-449 4-102 (118)
177 1ihg_A Cyclophilin 40; ppiase 99.2 2.8E-10 9.7E-15 113.3 15.2 106 335-448 223-336 (370)
178 2dba_A Smooth muscle cell asso 99.2 1.8E-10 6.3E-15 97.9 11.8 122 288-430 23-144 (148)
179 2if4_A ATFKBP42; FKBP-like, al 99.2 3.6E-11 1.2E-15 118.5 8.2 147 290-452 176-332 (338)
180 1wao_1 Serine/threonine protei 99.2 3.7E-12 1.2E-16 131.6 0.8 130 290-443 3-134 (477)
181 1elr_A TPR2A-domain of HOP; HO 99.2 3.4E-10 1.2E-14 93.8 12.7 107 334-449 3-109 (131)
182 2dba_A Smooth muscle cell asso 99.1 6.5E-10 2.2E-14 94.4 11.6 121 210-387 23-143 (148)
183 3mv2_B Coatomer subunit epsilo 99.1 3.3E-09 1.1E-13 100.9 17.2 179 293-534 100-288 (310)
184 3mv2_B Coatomer subunit epsilo 99.1 6.9E-09 2.4E-13 98.7 19.0 182 215-453 100-287 (310)
185 2kck_A TPR repeat; tetratricop 99.1 1.2E-10 4.1E-15 93.7 5.8 101 335-451 6-109 (112)
186 3k9i_A BH0479 protein; putativ 99.1 3.5E-10 1.2E-14 92.5 8.0 93 347-452 2-94 (117)
187 1b89_A Protein (clathrin heavy 99.0 9.6E-11 3.3E-15 116.5 5.1 241 213-523 59-306 (449)
188 2kck_A TPR repeat; tetratricop 99.0 1.6E-10 5.6E-15 92.9 5.5 104 374-531 3-109 (112)
189 1dce_A Protein (RAB geranylger 99.0 2.3E-09 7.9E-14 112.6 15.4 187 289-531 59-270 (567)
190 3k9i_A BH0479 protein; putativ 99.0 3.3E-10 1.1E-14 92.7 6.7 89 305-406 2-90 (117)
191 1zu2_A Mitochondrial import re 99.0 7.9E-10 2.7E-14 93.9 9.0 89 347-451 14-123 (158)
192 1zu2_A Mitochondrial import re 98.9 2.2E-09 7.6E-14 91.1 8.3 87 304-406 13-120 (158)
193 3q7a_A Farnesyltransferase alp 98.9 1.6E-08 5.5E-13 98.1 14.4 171 197-435 70-258 (349)
194 1na3_A Designed protein CTPR2; 98.9 1.1E-08 3.8E-13 78.7 10.9 87 331-433 5-91 (91)
195 1dce_A Protein (RAB geranylger 98.9 1E-08 3.6E-13 107.6 13.9 158 305-532 40-225 (567)
196 2l6j_A TPR repeat-containing p 98.8 1.3E-09 4.4E-14 87.7 3.8 94 335-444 4-103 (111)
197 1na3_A Designed protein CTPR2; 98.8 3.5E-08 1.2E-12 75.9 11.1 68 373-448 5-72 (91)
198 4e6h_A MRNA 3'-END-processing 98.8 2.3E-07 7.9E-12 98.9 19.8 226 205-532 333-574 (679)
199 2l6j_A TPR repeat-containing p 98.8 3.5E-09 1.2E-13 85.0 3.9 100 376-523 3-102 (111)
200 2kat_A Uncharacterized protein 98.7 3.4E-08 1.2E-12 80.1 8.0 85 394-532 2-86 (115)
201 2kat_A Uncharacterized protein 98.7 5.2E-08 1.8E-12 79.0 9.1 84 353-452 3-86 (115)
202 3ma5_A Tetratricopeptide repea 98.6 6.9E-08 2.4E-12 76.2 7.8 71 373-451 3-73 (100)
203 1klx_A Cysteine rich protein B 98.6 3.1E-07 1.1E-11 77.2 11.8 111 306-448 8-126 (138)
204 2kc7_A BFR218_protein; tetratr 98.6 1.2E-07 4E-12 74.4 7.3 62 381-450 4-66 (99)
205 3ma5_A Tetratricopeptide repea 98.6 3E-07 1E-11 72.4 9.7 72 211-326 3-74 (100)
206 2kc7_A BFR218_protein; tetratr 98.6 1.3E-07 4.3E-12 74.2 7.3 91 339-453 4-95 (99)
207 1klx_A Cysteine rich protein B 98.5 1.4E-06 4.7E-11 73.2 12.6 88 299-406 31-126 (138)
208 4e6h_A MRNA 3'-END-processing 98.5 1.9E-06 6.5E-11 91.9 15.7 194 310-530 326-535 (679)
209 3ly7_A Transcriptional activat 98.3 2.6E-05 8.7E-10 75.6 16.4 134 218-406 199-339 (372)
210 3ly7_A Transcriptional activat 98.2 1.4E-05 4.9E-10 77.3 13.5 139 294-451 197-342 (372)
211 2v5f_A Prolyl 4-hydroxylase su 98.2 1.3E-05 4.5E-10 63.4 11.1 83 335-426 5-87 (104)
212 4g26_A Pentatricopeptide repea 98.2 4.6E-05 1.6E-09 78.6 17.3 168 217-448 28-204 (501)
213 2v5f_A Prolyl 4-hydroxylase su 98.1 3.2E-05 1.1E-09 61.1 10.9 83 293-384 5-87 (104)
214 4g26_A Pentatricopeptide repea 98.1 0.00011 3.9E-09 75.6 17.5 166 295-484 28-202 (501)
215 3u64_A Protein TP_0956; tetrat 98.0 0.00044 1.5E-08 64.2 19.1 105 331-451 148-272 (301)
216 3u64_A Protein TP_0956; tetrat 98.0 0.00015 5.1E-09 67.4 15.9 105 288-406 147-269 (301)
217 3txn_A 26S proteasome regulato 98.0 0.0017 5.8E-08 63.9 24.1 191 214-450 18-212 (394)
218 3bee_A Putative YFRE protein; 97.9 2E-05 6.8E-10 60.8 7.0 70 374-451 3-75 (93)
219 1pc2_A Mitochondria fission pr 97.8 0.00015 5.1E-09 60.7 11.0 90 309-421 14-107 (152)
220 2uy1_A Cleavage stimulation fa 97.8 0.0039 1.3E-07 64.0 23.7 121 352-486 196-349 (493)
221 1pc2_A Mitochondria fission pr 97.8 0.00014 4.8E-09 60.9 10.2 71 374-452 29-104 (152)
222 3txn_A 26S proteasome regulato 97.8 0.0054 1.9E-07 60.3 22.8 211 293-515 19-236 (394)
223 3bee_A Putative YFRE protein; 97.7 0.00011 3.6E-09 56.6 7.9 68 290-365 3-73 (93)
224 3ffl_A Anaphase-promoting comp 97.7 0.00042 1.4E-08 58.3 11.4 130 291-429 18-165 (167)
225 3ffl_A Anaphase-promoting comp 97.5 0.0017 5.9E-08 54.6 13.2 111 335-445 20-148 (167)
226 2uy1_A Cleavage stimulation fa 97.4 0.0041 1.4E-07 63.9 16.8 94 335-445 286-380 (493)
227 4b4t_P 26S proteasome regulato 97.2 0.088 3E-06 53.0 23.4 196 207-410 48-251 (445)
228 4h7y_A Dual specificity protei 97.1 0.0028 9.4E-08 52.2 8.8 108 335-451 13-126 (161)
229 4h7y_A Dual specificity protei 97.0 0.0054 1.8E-07 50.5 9.9 109 212-365 10-124 (161)
230 4b4t_P 26S proteasome regulato 96.8 0.075 2.6E-06 53.5 19.0 154 286-448 49-206 (445)
231 1nzn_A CGI-135 protein, fissio 96.8 0.0086 2.9E-07 48.1 9.4 86 394-532 18-107 (126)
232 1nzn_A CGI-135 protein, fissio 96.6 0.023 8E-07 45.6 10.7 84 308-406 16-103 (126)
233 3lpz_A GET4 (YOR164C homolog); 96.2 0.91 3.1E-05 43.1 25.6 218 288-513 50-296 (336)
234 4b4t_R RPN7, 26S proteasome re 95.8 0.03 1E-06 56.3 9.7 108 334-448 130-237 (429)
235 2wpv_A GET4, UPF0363 protein Y 95.8 1.3 4.4E-05 41.8 21.3 157 288-449 48-218 (312)
236 4b4t_R RPN7, 26S proteasome re 95.5 0.04 1.4E-06 55.3 9.3 110 290-406 128-237 (429)
237 4gns_B Protein CSD3, chitin bi 95.3 0.28 9.6E-06 52.3 15.1 123 306-445 261-397 (754)
238 3spa_A Mtrpol, DNA-directed RN 94.8 0.21 7.3E-06 54.5 12.3 106 332-448 124-230 (1134)
239 3o48_A Mitochondria fission 1 94.7 0.25 8.5E-06 39.8 9.6 69 376-452 39-111 (134)
240 4gns_B Protein CSD3, chitin bi 94.6 0.43 1.5E-05 50.9 14.2 89 307-403 299-397 (754)
241 3spa_A Mtrpol, DNA-directed RN 94.3 0.54 1.9E-05 51.4 14.1 108 288-406 122-230 (1134)
242 3kae_A CDC27, possible protein 94.3 0.97 3.3E-05 37.9 12.3 99 295-406 35-143 (242)
243 3o48_A Mitochondria fission 1 94.3 0.45 1.5E-05 38.3 10.2 64 335-406 40-107 (134)
244 2wpv_A GET4, UPF0363 protein Y 94.2 3.7 0.00013 38.7 23.0 194 304-530 24-219 (312)
245 1deb_A APC protein, adenomatou 94.1 0.31 1.1E-05 30.8 6.9 47 100-146 5-51 (54)
246 1ya0_A SMG-7 transcript varian 93.7 0.2 6.9E-06 50.8 9.2 80 335-430 152-231 (497)
247 2ff4_A Probable regulatory pro 93.6 1.2 4E-05 43.8 14.3 128 214-373 114-243 (388)
248 1y8m_A FIS1; mitochondria, unk 93.6 0.49 1.7E-05 38.6 9.3 72 374-452 36-110 (144)
249 1y8m_A FIS1; mitochondria, unk 92.8 1 3.5E-05 36.7 10.1 66 334-406 38-106 (144)
250 2ff4_A Probable regulatory pro 92.7 1.5 5.1E-05 43.0 13.6 105 302-414 124-242 (388)
251 3mkq_A Coatomer beta'-subunit; 92.7 1.1 3.8E-05 48.5 14.0 26 378-403 682-707 (814)
252 4b4t_S RPN3, 26S proteasome re 92.4 0.72 2.5E-05 46.5 10.7 150 300-452 143-303 (523)
253 2xdj_A Uncharacterized protein 91.9 0.71 2.4E-05 33.7 7.4 33 83-115 19-51 (83)
254 3hnw_A Uncharacterized protein 91.7 1.6 5.6E-05 35.5 10.1 64 82-145 57-122 (138)
255 3kae_A CDC27, possible protein 91.7 5.3 0.00018 33.5 19.3 182 336-530 34-239 (242)
256 4b4t_S RPN3, 26S proteasome re 91.6 0.35 1.2E-05 48.8 7.3 148 344-532 145-303 (523)
257 1ya0_A SMG-7 transcript varian 91.1 0.78 2.7E-05 46.5 9.4 64 377-448 152-215 (497)
258 3mkq_A Coatomer beta'-subunit; 91.1 4.3 0.00015 43.8 16.3 26 294-319 682-707 (814)
259 2br9_A 14-3-3E, 14-3-3 protein 91.0 8.2 0.00028 34.5 22.9 57 393-449 146-203 (234)
260 3ubw_A 14-3-3E, 14-3-3 protein 90.7 9.4 0.00032 34.5 22.3 57 393-449 172-229 (261)
261 2br9_A 14-3-3E, 14-3-3 protein 90.6 8.4 0.00029 34.4 14.6 58 473-530 146-204 (234)
262 3mkq_B Coatomer subunit alpha; 90.6 2.9 9.8E-05 35.6 11.0 102 344-483 14-115 (177)
263 1o9d_A 14-3-3-like protein C; 90.6 9.8 0.00033 34.5 23.0 57 393-449 151-208 (260)
264 3mkq_B Coatomer subunit alpha; 90.4 5.1 0.00017 34.1 12.5 101 303-445 15-115 (177)
265 3uzd_A 14-3-3 protein gamma; s 90.3 9.9 0.00034 34.2 22.9 57 393-449 147-204 (248)
266 2npm_A 14-3-3 domain containin 89.4 12 0.00042 33.9 22.9 56 393-449 172-228 (260)
267 1zbp_A Hypothetical protein VP 89.3 6 0.00021 36.1 12.6 118 386-532 6-133 (273)
268 3iqu_A 14-3-3 protein sigma; s 88.2 14 0.00047 33.0 21.3 56 393-448 149-205 (236)
269 2o8p_A 14-3-3 domain containin 88.2 13 0.00045 32.8 21.0 61 389-449 137-198 (227)
270 3lpz_A GET4 (YOR164C homolog); 87.5 20 0.00067 34.0 23.4 190 304-529 23-217 (336)
271 1ci6_A Transcription factor AT 86.7 1.5 5E-05 30.2 5.4 36 87-122 26-61 (63)
272 4fhn_B Nucleoporin NUP120; pro 85.7 20 0.00068 40.6 17.3 130 295-437 844-989 (1139)
273 4b4t_O 26S proteasome regulato 85.3 26 0.0009 34.1 15.9 130 313-447 59-197 (393)
274 2o8p_A 14-3-3 domain containin 84.4 12 0.00041 33.1 11.4 180 220-407 11-198 (227)
275 3ra3_B P2F; coiled coil domain 83.5 0.79 2.7E-05 24.1 2.1 24 107-130 2-25 (28)
276 2npm_A 14-3-3 domain containin 82.7 24 0.00082 31.9 13.0 55 310-365 173-228 (260)
277 3a7p_A Autophagy protein 16; c 81.9 10 0.00035 30.8 9.1 63 83-145 67-129 (152)
278 2w6b_A RHO guanine nucleotide 81.7 4.2 0.00014 26.4 5.3 35 101-135 13-47 (56)
279 1o9d_A 14-3-3-like protein C; 81.7 30 0.001 31.3 17.8 57 473-529 151-208 (260)
280 2xdj_A Uncharacterized protein 81.6 8.4 0.00029 28.0 7.8 52 85-136 14-65 (83)
281 2w83_C C-JUN-amino-terminal ki 81.4 4.8 0.00016 28.3 6.0 51 94-144 26-76 (77)
282 4b4t_O 26S proteasome regulato 81.2 27 0.00093 34.0 14.1 107 301-407 84-199 (393)
283 1nkp_B MAX protein, MYC proto- 80.3 4.3 0.00015 29.7 6.1 44 80-123 36-79 (83)
284 3i00_A HIP-I, huntingtin-inter 79.3 12 0.00041 29.4 8.6 51 84-134 40-90 (120)
285 1vf6_A PALS-1, PALS1-associate 79.0 8.5 0.00029 27.4 6.7 62 32-114 3-64 (83)
286 1nkp_A C-MYC, MYC proto-oncoge 78.9 4.5 0.00016 29.9 5.8 45 80-124 41-85 (88)
287 1t2k_D Cyclic-AMP-dependent tr 77.6 5.2 0.00018 27.2 5.4 36 86-121 24-59 (61)
288 1gd2_E Transcription factor PA 77.6 4.2 0.00014 28.5 4.9 38 91-128 29-66 (70)
289 4fhn_B Nucleoporin NUP120; pro 77.2 2.8 9.7E-05 47.5 6.3 120 216-360 843-963 (1139)
290 3uzd_A 14-3-3 protein gamma; s 77.1 41 0.0014 30.2 18.3 57 473-529 147-204 (248)
291 3ubw_A 14-3-3E, 14-3-3 protein 76.6 43 0.0015 30.2 18.1 57 473-529 172-229 (261)
292 4ady_A RPN2, 26S proteasome re 76.4 35 0.0012 37.3 13.9 127 295-444 457-585 (963)
293 3re2_A Predicted protein; meni 75.6 43 0.0015 31.7 12.3 54 354-410 276-329 (472)
294 3efz_A 14-3-3 protein; 14-3-3, 74.7 41 0.0014 30.5 11.8 74 291-364 140-226 (268)
295 3ghg_A Fibrinogen alpha chain; 74.6 26 0.00089 34.7 11.2 102 26-136 54-155 (562)
296 3iqu_A 14-3-3 protein sigma; s 74.1 48 0.0016 29.5 17.7 57 473-529 149-206 (236)
297 1jnm_A Proto-oncogene C-JUN; B 73.8 5 0.00017 27.4 4.5 37 85-121 23-59 (62)
298 1zbp_A Hypothetical protein VP 73.3 34 0.0012 31.1 11.1 55 344-406 6-60 (273)
299 3esl_A Checkpoint serine/threo 73.2 45 0.0016 28.8 13.9 72 286-364 73-144 (202)
300 1qsa_A Protein (soluble lytic 72.6 18 0.0006 37.8 10.4 131 296-447 217-347 (618)
301 1nlw_A MAD protein, MAX dimeri 72.5 18 0.0006 26.1 7.4 39 84-122 40-78 (80)
302 4ady_A RPN2, 26S proteasome re 71.8 79 0.0027 34.6 15.3 139 290-446 410-551 (963)
303 3u84_A Menin; MLL, JUND, ledgf 70.3 62 0.0021 31.3 12.3 54 354-410 298-351 (550)
304 3efz_A 14-3-3 protein; 14-3-3, 68.7 68 0.0023 29.0 16.7 95 354-448 117-226 (268)
305 1p9i_A Cortexillin I/GCN4 hybr 68.7 5.2 0.00018 21.5 2.7 24 88-111 3-26 (31)
306 1kd8_A GABH AIV, GCN4 acid bas 68.3 14 0.00048 21.6 4.6 31 102-132 5-35 (36)
307 3re2_A Predicted protein; meni 68.2 76 0.0026 30.1 12.2 96 416-533 232-330 (472)
308 1hjb_A Ccaat/enhancer binding 67.6 7.5 0.00026 28.6 4.4 39 88-126 40-78 (87)
309 1deb_A APC protein, adenomatou 67.4 21 0.00072 22.6 6.0 47 31-94 5-51 (54)
310 1c1g_A Tropomyosin; contractIl 67.1 70 0.0024 28.5 14.9 109 25-140 16-125 (284)
311 4gq4_A Menin; tumor suppressor 67.0 69 0.0024 31.0 11.9 97 288-410 237-336 (489)
312 3mq9_A Bone marrow stromal ant 66.0 25 0.00085 35.2 9.8 53 25-77 362-417 (471)
313 4aez_C MAD3, mitotic spindle c 65.4 50 0.0017 29.1 10.1 67 286-364 113-179 (223)
314 3u84_A Menin; MLL, JUND, ledgf 65.2 95 0.0033 30.0 12.4 96 416-533 254-352 (550)
315 2yy0_A C-MYC-binding protein; 64.9 7.7 0.00026 25.5 3.7 18 97-114 25-42 (53)
316 3oja_A Leucine-rich immune mol 64.3 1.1E+02 0.0037 30.5 14.2 102 32-139 370-476 (487)
317 3oja_B Anopheles plasmodium-re 64.0 83 0.0028 32.4 13.7 39 105-143 537-575 (597)
318 3l4f_A RHO guanine nucleotide 61.4 22 0.00076 23.8 5.3 38 101-138 10-47 (61)
319 2crb_A Nuclear receptor bindin 59.7 25 0.00085 25.9 5.8 36 375-410 13-48 (97)
320 1kd8_B GABH BLL, GCN4 acid bas 59.5 24 0.00082 20.6 4.6 31 101-131 4-34 (36)
321 3cvf_A Homer-3, homer protein 59.4 23 0.00079 25.4 5.6 23 91-113 13-35 (79)
322 3s9g_A Protein hexim1; cyclin 59.3 51 0.0018 24.4 9.2 26 90-115 64-89 (104)
323 2crb_A Nuclear receptor bindin 58.2 23 0.0008 26.1 5.5 35 497-531 13-47 (97)
324 2rpa_A Katanin P60 ATPase-cont 57.8 2 6.9E-05 30.9 -0.1 39 501-539 14-52 (78)
325 2wt7_A Proto-oncogene protein 57.6 28 0.00097 23.7 5.7 21 102-122 27-47 (63)
326 2vkj_A TM1634; membrane protei 57.2 48 0.0017 24.1 6.9 32 213-244 51-82 (106)
327 2wvi_A Mitotic checkpoint seri 57.1 31 0.001 28.8 7.0 66 287-364 60-125 (164)
328 1wt6_A Myotonin-protein kinase 56.6 51 0.0018 23.5 7.3 49 88-143 11-62 (81)
329 2wt7_A Proto-oncogene protein 56.2 31 0.0011 23.5 5.7 37 86-122 25-61 (63)
330 2wt7_B Transcription factor MA 56.0 27 0.00091 25.8 5.6 37 93-129 50-86 (90)
331 4gq4_A Menin; tumor suppressor 55.9 1.5E+02 0.0052 28.7 12.5 97 417-535 240-339 (489)
332 2rpa_A Katanin P60 ATPase-cont 55.8 14 0.00047 26.5 4.0 35 215-249 12-46 (78)
333 2wuj_A Septum site-determining 55.2 13 0.00043 24.9 3.5 31 96-126 25-55 (57)
334 2dgc_A Protein (GCN4); basic d 54.9 15 0.00051 25.1 3.9 29 100-128 32-60 (63)
335 1hlo_A Protein (transcription 54.4 17 0.00059 26.1 4.5 35 80-114 46-80 (80)
336 3c3g_A Alpha/beta peptide with 53.8 18 0.00063 20.6 3.4 27 102-128 4-30 (33)
337 1a92_A Delta antigen; leucine 53.5 14 0.00047 23.3 3.1 26 93-118 16-41 (50)
338 4aez_C MAD3, mitotic spindle c 53.4 1E+02 0.0035 27.1 10.0 82 355-448 97-179 (223)
339 3m91_A Proteasome-associated A 52.9 44 0.0015 21.6 6.2 37 101-137 12-48 (51)
340 1dh3_A Transcription factor CR 52.8 18 0.00063 23.9 4.0 27 100-126 24-50 (55)
341 1gu4_A CAAT/enhancer binding p 52.4 13 0.00043 26.7 3.3 34 88-121 40-73 (78)
342 2w2u_A Hypothetical P60 katani 51.7 37 0.0013 24.6 5.8 31 380-410 22-52 (83)
343 2w2u_A Hypothetical P60 katani 51.3 31 0.0011 25.0 5.4 35 213-247 17-51 (83)
344 4a1g_A Mitotic checkpoint seri 51.1 42 0.0014 27.6 6.8 81 314-406 49-130 (152)
345 4a1g_A Mitotic checkpoint seri 50.9 30 0.001 28.4 5.9 66 287-364 65-130 (152)
346 1t2k_D Cyclic-AMP-dependent tr 50.9 37 0.0013 22.9 5.4 35 99-133 23-57 (61)
347 2yy0_A C-MYC-binding protein; 49.4 32 0.0011 22.5 4.6 31 98-128 19-49 (53)
348 2eqb_B RAB guanine nucleotide 49.1 80 0.0027 23.5 7.5 49 95-143 9-57 (97)
349 2oqq_A Transcription factor HY 49.0 43 0.0015 20.4 4.6 33 89-121 8-40 (42)
350 3ax2_A Mitochondrial import re 49.0 17 0.00057 25.7 3.4 30 503-532 21-50 (73)
351 2dfs_A Myosin-5A; myosin-V, in 48.9 67 0.0023 35.9 10.1 24 88-111 1020-1043(1080)
352 3he4_A Synzip6; heterodimeric 48.9 44 0.0015 20.5 5.5 38 98-135 17-54 (56)
353 3ghg_C Fibrinogen gamma chain; 48.8 1.4E+02 0.0048 28.9 11.0 106 25-139 27-132 (411)
354 2wvi_A Mitotic checkpoint seri 48.7 45 0.0015 27.8 6.7 66 371-448 60-125 (164)
355 2cpt_A SKD1 protein, vacuolar 48.1 95 0.0033 24.1 8.6 32 380-411 21-52 (117)
356 3vkg_A Dynein heavy chain, cyt 47.5 2.2E+02 0.0074 36.0 14.7 76 64-145 2014-2089(3245)
357 2v6y_A AAA family ATPase, P60 47.1 39 0.0013 24.4 5.4 34 214-247 10-43 (83)
358 2v6y_A AAA family ATPase, P60 47.0 47 0.0016 24.0 5.8 30 381-410 15-44 (83)
359 4emc_A Monopolin complex subun 46.9 66 0.0023 27.2 7.3 35 98-132 27-61 (190)
360 3c3f_A Alpha/beta peptide with 46.8 28 0.00094 20.0 3.4 27 102-128 5-31 (34)
361 1qsa_A Protein (soluble lytic 46.1 2.7E+02 0.0092 28.8 21.4 129 382-527 219-347 (618)
362 3oja_B Anopheles plasmodium-re 45.7 2.6E+02 0.0089 28.5 13.9 60 85-144 510-569 (597)
363 3q0x_A Centriole protein; cent 45.5 91 0.0031 27.5 8.4 56 81-136 161-216 (228)
364 1hjb_A Ccaat/enhancer binding 45.3 42 0.0014 24.6 5.2 39 101-139 39-77 (87)
365 2efr_A General control protein 44.6 1.3E+02 0.0044 24.7 9.0 60 87-146 52-111 (155)
366 2l5g_A GPS2 protein, G protein 44.1 16 0.00053 21.6 2.1 30 20-49 6-35 (38)
367 1gu4_A CAAT/enhancer binding p 42.9 34 0.0012 24.5 4.3 37 101-137 39-75 (78)
368 1om2_A Protein (mitochondrial 42.8 27 0.00093 26.1 3.9 30 503-532 24-53 (95)
369 3t5v_B Nuclear mRNA export pro 41.9 78 0.0027 31.4 8.4 100 218-351 179-281 (455)
370 3m48_A General control protein 41.2 40 0.0014 19.4 3.4 24 102-125 4-27 (33)
371 3t5v_B Nuclear mRNA export pro 40.9 95 0.0032 30.8 8.8 75 377-452 176-254 (455)
372 2bni_A General control protein 40.5 35 0.0012 19.7 3.2 27 102-128 5-31 (34)
373 2v6x_A Vacuolar protein sortin 40.4 60 0.002 23.5 5.6 35 213-247 11-45 (85)
374 2hy6_A General control protein 40.1 53 0.0018 18.9 4.1 27 102-128 5-31 (34)
375 2oxj_A Hybrid alpha/beta pepti 39.9 54 0.0018 18.9 4.0 25 102-126 5-29 (34)
376 3t5x_A PCI domain-containing p 39.8 40 0.0014 29.2 5.3 37 496-532 11-47 (203)
377 4gq2_M Nucleoporin NUP120; bet 39.3 1.6E+02 0.0054 32.4 11.2 70 294-365 841-927 (950)
378 2v4h_A NF-kappa-B essential mo 39.1 25 0.00087 26.7 3.3 23 95-117 87-109 (110)
379 2eqb_B RAB guanine nucleotide 39.1 79 0.0027 23.6 5.8 46 99-144 6-51 (97)
380 4gq2_M Nucleoporin NUP120; bet 38.9 49 0.0017 36.5 7.1 109 214-347 839-948 (950)
381 3ax2_A Mitochondrial import re 38.8 45 0.0015 23.5 4.3 28 296-323 20-47 (73)
382 2r2v_A GCN4 leucine zipper; co 38.6 55 0.0019 18.9 3.8 28 102-129 5-32 (34)
383 1om2_A Protein (mitochondrial 38.1 66 0.0023 23.9 5.4 28 296-323 23-50 (95)
384 3na7_A HP0958; flagellar bioge 38.1 84 0.0029 28.3 7.4 54 93-146 13-66 (256)
385 1wfd_A Hypothetical protein 15 37.6 64 0.0022 23.9 5.4 35 213-247 13-47 (93)
386 2jee_A YIIU; FTSZ, septum, coi 37.2 1.1E+02 0.0039 21.9 9.2 19 110-128 53-71 (81)
387 4a5x_A MITD1, MIT domain-conta 36.6 1.2E+02 0.0041 22.0 8.9 35 377-411 16-50 (86)
388 1jcd_A Major outer membrane li 36.6 87 0.003 20.3 6.6 26 88-113 8-33 (52)
389 3hnw_A Uncharacterized protein 36.6 1.6E+02 0.0056 23.5 8.1 51 91-141 82-132 (138)
390 1ci6_A Transcription factor AT 36.3 99 0.0034 20.9 7.2 39 94-132 19-57 (63)
391 3t5x_A PCI domain-containing p 36.2 77 0.0026 27.4 6.6 61 289-352 10-70 (203)
392 1jcd_A Major outer membrane li 36.2 88 0.003 20.3 6.3 35 92-126 5-39 (52)
393 2dfs_A Myosin-5A; myosin-V, in 36.1 1.4E+02 0.0049 33.3 10.1 18 95-112 988-1005(1080)
394 3esl_A Checkpoint serine/threo 35.8 2.1E+02 0.0073 24.6 16.3 86 356-448 58-144 (202)
395 2jee_A YIIU; FTSZ, septum, coi 35.8 1.2E+02 0.0041 21.7 7.1 43 101-143 23-65 (81)
396 4emc_A Monopolin complex subun 35.5 2E+02 0.0069 24.3 8.6 43 97-139 19-61 (190)
397 1et1_A Parathyroid hormone; he 35.4 67 0.0023 18.7 3.9 20 80-99 2-21 (34)
398 1wy6_A Hypothetical protein ST 34.9 1E+02 0.0035 25.0 6.3 54 387-448 101-154 (172)
399 2dgc_A Protein (GCN4); basic d 34.1 37 0.0013 23.1 3.2 30 92-121 31-60 (63)
400 1nkp_B MAX protein, MYC proto- 32.6 1.4E+02 0.0047 21.4 6.9 45 63-117 36-80 (83)
401 1bwx_A Parathyroid hormone; pe 32.2 26 0.00089 21.0 1.8 20 80-99 2-21 (39)
402 2v6x_A Vacuolar protein sortin 32.1 1.4E+02 0.0048 21.4 8.2 33 378-410 14-46 (85)
403 1uo4_A General control protein 31.7 57 0.0019 18.9 3.1 25 102-126 5-29 (34)
404 1zb1_A BRO1 protein; AIP1, BRO 31.4 3.6E+02 0.012 25.9 11.9 120 291-410 121-290 (392)
405 1jnm_A Proto-oncogene C-JUN; B 31.0 41 0.0014 22.7 3.1 31 99-129 23-53 (62)
406 1dh3_A Transcription factor CR 31.0 28 0.00094 23.0 2.1 18 94-111 32-49 (55)
407 2fxo_A Myosin heavy chain, car 30.8 2E+02 0.0067 22.7 9.0 41 105-145 69-109 (129)
408 1wfd_A Hypothetical protein 15 30.2 1.6E+02 0.0056 21.6 8.2 33 378-410 16-48 (93)
409 2l5g_B Putative uncharacterize 29.6 89 0.0031 19.1 3.9 20 91-110 9-28 (42)
410 2wb7_A PT26-6P; extra chromoso 29.5 3.5E+02 0.012 26.8 10.3 35 310-344 449-483 (526)
411 2xv5_A Lamin-A/C; structural p 29.4 1.5E+02 0.0051 20.9 7.9 48 96-143 3-50 (74)
412 2cwy_A Hypothetical protein TT 28.9 95 0.0033 23.0 5.1 67 298-368 6-72 (94)
413 1m1j_B Fibrinogen beta chain; 28.6 4.4E+02 0.015 26.0 14.5 39 32-77 96-134 (464)
414 3ol1_A Vimentin; structural ge 28.0 1.3E+02 0.0044 23.4 6.0 30 97-126 19-48 (119)
415 1ik9_A DNA repair protein XRCC 27.7 2.7E+02 0.0093 24.2 8.5 18 97-114 138-155 (213)
416 3mtu_A Tropomyosin alpha-1 cha 27.6 1.6E+02 0.0055 20.7 7.4 52 85-136 3-54 (75)
417 3myv_A SUSD superfamily protei 27.6 71 0.0024 31.6 5.5 35 331-365 186-220 (454)
418 3swf_A CGMP-gated cation chann 27.4 1.6E+02 0.0055 20.6 6.7 39 102-143 11-49 (74)
419 3myv_A SUSD superfamily protei 27.3 83 0.0028 31.2 6.0 36 288-323 185-220 (454)
420 3q8t_A Beclin-1; autophagy, AT 27.3 1.9E+02 0.0066 21.4 8.8 71 67-143 7-77 (96)
421 3kez_A Putative sugar binding 26.8 92 0.0031 30.9 6.2 35 289-323 192-226 (461)
422 1lwu_C Fibrinogen gamma chain; 26.6 1.4E+02 0.0049 27.9 6.9 21 119-139 33-53 (323)
423 2ijq_A Hypothetical protein; s 26.6 2.7E+02 0.0093 22.9 8.1 69 339-410 36-108 (161)
424 3kez_A Putative sugar binding 26.4 75 0.0026 31.6 5.5 35 331-365 192-226 (461)
425 2vkj_A TM1634; membrane protei 26.0 1.9E+02 0.0066 21.0 8.3 49 376-430 52-101 (106)
426 2qyw_A Vesicle transport throu 25.6 2.1E+02 0.0073 21.4 9.6 56 88-143 12-73 (102)
427 3w03_C DNA repair protein XRCC 25.5 1.2E+02 0.004 25.8 5.5 44 82-128 139-182 (184)
428 1am9_A Srebp-1A, protein (ster 25.3 1.5E+02 0.0051 21.2 5.4 35 80-114 39-73 (82)
429 2cpt_A SKD1 protein, vacuolar 24.9 2.4E+02 0.0082 21.8 8.6 35 292-326 17-51 (117)
430 2wb7_A PT26-6P; extra chromoso 24.2 84 0.0029 31.1 5.0 41 394-434 449-489 (526)
431 3u06_A Protein claret segregat 24.2 1.9E+02 0.0065 28.1 7.7 39 94-132 6-44 (412)
432 2cwy_A Hypothetical protein TT 24.1 1.3E+02 0.0046 22.2 5.1 67 220-326 6-72 (94)
433 3gp4_A Transcriptional regulat 24.1 2.8E+02 0.0094 22.2 8.4 17 89-105 86-102 (142)
434 1a93_B MAX protein, coiled coi 23.8 1E+02 0.0036 17.9 3.3 21 98-118 7-27 (34)
435 3swf_A CGMP-gated cation chann 23.6 1.9E+02 0.0066 20.2 6.6 40 62-110 5-44 (74)
436 3m91_A Proteasome-associated A 23.5 1.5E+02 0.0053 19.1 5.7 28 98-125 16-43 (51)
437 1wy6_A Hypothetical protein ST 23.4 1.8E+02 0.0061 23.6 5.8 33 332-364 122-154 (172)
438 1i84_S Smooth muscle myosin he 23.2 1.3E+02 0.0044 34.1 7.1 21 94-114 916-936 (1184)
439 1m1j_C Fibrinogen gamma chain; 22.8 5.2E+02 0.018 25.0 10.7 26 30-55 42-67 (409)
440 3swy_A Cyclic nucleotide-gated 22.6 1.5E+02 0.0052 18.6 6.1 14 63-76 4-17 (46)
441 2r17_C Vacuolar protein sortin 22.5 4.6E+02 0.016 24.1 20.6 152 294-450 100-269 (298)
442 3fxd_A Protein ICMQ; helix bun 22.4 43 0.0015 22.0 1.7 33 45-79 10-45 (57)
443 2ijq_A Hypothetical protein; s 22.4 3.3E+02 0.011 22.4 9.7 76 215-326 32-108 (161)
444 4a5x_A MITD1, MIT domain-conta 22.3 2.2E+02 0.0077 20.5 9.0 35 335-369 16-50 (86)
445 2a9u_A Ubiquitin carboxyl-term 22.1 2.5E+02 0.0084 22.7 6.7 42 335-378 42-83 (144)
446 1i84_S Smooth muscle myosin he 22.1 3.9E+02 0.013 30.2 10.7 17 91-107 885-901 (1184)
447 3bas_A Myosin heavy chain, str 21.8 2.4E+02 0.008 20.5 9.0 53 93-145 30-82 (89)
448 4fla_A Regulation of nuclear P 21.6 3.3E+02 0.011 22.2 9.6 58 86-143 81-138 (152)
449 3ghg_A Fibrinogen alpha chain; 21.6 5.3E+02 0.018 25.7 9.9 41 109-149 114-154 (562)
450 1k1f_A Breakpoint cluster regi 21.4 1.4E+02 0.0048 20.2 4.1 37 92-128 27-63 (72)
451 2dl1_A Spartin; SPG20, MIT, st 21.4 2.1E+02 0.0072 22.1 5.7 28 511-538 34-61 (116)
452 1nkp_A C-MYC, MYC proto-oncoge 21.2 2E+02 0.007 20.8 5.5 43 63-115 41-83 (88)
453 3tnu_A Keratin, type I cytoske 21.2 3E+02 0.01 21.6 7.9 18 120-137 78-95 (131)
454 2dl1_A Spartin; SPG20, MIT, st 21.2 2.9E+02 0.0099 21.3 6.8 28 383-410 28-55 (116)
455 2e2a_A Protein (enzyme IIA); h 21.2 2E+02 0.0067 21.8 5.5 37 211-247 16-52 (105)
456 1fxk_A Prefoldin; archaeal pro 21.0 1.9E+02 0.0066 21.5 5.8 25 31-55 20-44 (107)
457 1y4c_A Maltose binding protein 20.9 2.5E+02 0.0086 28.0 8.1 108 26-141 349-464 (494)
458 2wq1_A General control protein 20.9 1.3E+02 0.0044 17.2 4.0 26 102-127 4-29 (33)
459 1wcr_A PTS system, N, N'-diace 20.8 2E+02 0.0069 21.7 5.5 36 212-247 15-50 (103)
460 3mq7_A Bone marrow stromal ant 20.3 3E+02 0.01 21.1 11.6 45 94-145 60-104 (121)
461 3a7o_A Autophagy protein 16; c 20.3 2.2E+02 0.0075 19.6 7.9 41 84-124 18-58 (75)
462 3m9b_A Proteasome-associated A 20.2 81 0.0028 28.1 3.7 41 86-126 56-96 (251)
463 2wm9_A Dedicator of cytokinesi 20.2 5.7E+02 0.02 24.8 10.3 29 335-363 11-39 (428)
464 2aze_B Transcription factor E2 20.1 1.5E+02 0.0051 22.5 4.7 38 90-127 5-42 (106)
No 1
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.96 E-value=3.3e-26 Score=223.08 Aligned_cols=284 Identities=76% Similarity=1.135 Sum_probs=239.5
Q ss_pred hhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhc
Q psy597 204 QVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILG 283 (546)
Q Consensus 204 ~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 283 (546)
....+.++|..+.++..+|.++...|++++|+.+|+++++......
T Consensus 16 ~q~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~---------------------------------- 61 (311)
T 3nf1_A 16 FQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTS---------------------------------- 61 (311)
T ss_dssp CSSSCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH----------------------------------
T ss_pred ccCCCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHc----------------------------------
Confidence 3446678899999999999999999999999999999999887765
Q ss_pred cCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 284 SGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALE 363 (546)
Q Consensus 284 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 363 (546)
+.+.+..+.++..+|.+|...|++++|+.+|++++.+.....+++++....++..+|.+|...|++++|+.+|++++.
T Consensus 62 --~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 139 (311)
T 3nf1_A 62 --GHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALE 139 (311)
T ss_dssp --CSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred --CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 557788999999999999999999999999999999999988888899999999999999999999999999999999
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy597 364 IREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYK 443 (546)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~ 443 (546)
+.++..+++++....++.++|.++...|++++|+.+|++++.++....+++++....++..+|.+|...|++++|+.+|+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 219 (311)
T 3nf1_A 140 IREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYK 219 (311)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99998888899999999999999999999999999999999999998888899999999999999999999999999999
Q ss_pred HHHHhhhhcccCcccCCChhhHH-----------HHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHc
Q psy597 444 QVLTRAHEREFGACDGDNKPIWQ-----------DRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ 512 (546)
Q Consensus 444 ~al~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~ 512 (546)
+++...+...++.........+. ....+.+..+...+.++.. .+|....++..+|.+|...
T Consensus 220 ~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~~la~~~~~~ 291 (311)
T 3nf1_A 220 EILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKV--------DSPTVTTTLKNLGALYRRQ 291 (311)
T ss_dssp HHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-----------------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCC--------CCchHHHHHHHHHHHHHHC
Confidence 99998776443332222222222 1122233333444444443 3788999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhh
Q psy597 513 GKYKEAEILYKQVLTRAHE 531 (546)
Q Consensus 513 g~~~~A~~~~~~al~~~~~ 531 (546)
|++++|..+|++++++.|+
T Consensus 292 g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 292 GKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp TCHHHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHHhhc
Confidence 9999999999999998764
No 2
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.94 E-value=3e-24 Score=205.88 Aligned_cols=268 Identities=69% Similarity=1.001 Sum_probs=224.6
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHH
Q psy597 225 YASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYR 304 (546)
Q Consensus 225 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~ 304 (546)
....|++++|+.+|+++++.+.+.. +.++|..+.++..+|.+|.
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~------------------------------------~~~~~~~~~~~~~l~~~~~ 54 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTS------------------------------------GHDHPDVATMLNILALVYR 54 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHH------------------------------------CSSSHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhc------------------------------------CCCCHHHHHHHHHHHHHHH
Confidence 3467999999999999999888766 5577899999999999999
Q ss_pred HhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q psy597 305 DQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLA 384 (546)
Q Consensus 305 ~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 384 (546)
..|++++|+.+|++++.+.....+++++....++..+|.+|...|++++|+.+|.+++.+.++..++++|....++.++|
T Consensus 55 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 134 (283)
T 3edt_B 55 DQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLA 134 (283)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 99999999999999999999998889999999999999999999999999999999999999998888899999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhh
Q psy597 385 LLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPI 464 (546)
Q Consensus 385 ~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~ 464 (546)
.++...|++++|+.+|+++++++....++++|....++.++|.+|..+|++++|+.+|++++...+..............
T Consensus 135 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~ 214 (283)
T 3edt_B 135 LLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPI 214 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHH
Confidence 99999999999999999999999998888899999999999999999999999999999999988776555444444333
Q ss_pred HHH----HhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q psy597 465 WQD----RQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRA 529 (546)
Q Consensus 465 ~~~----~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~ 529 (546)
+.. ...+........+..+...+. ....++|....++..+|.+|...|++++|..+|++++++.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 215 WMHAEEREESKDKRRDSAPYGEYGSWYK-ACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHHHHHHTTCCCCC-------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 331 112222222334555554433 3345578999999999999999999999999999998753
No 3
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.94 E-value=4.9e-24 Score=216.84 Aligned_cols=314 Identities=16% Similarity=0.090 Sum_probs=255.9
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCCh
Q psy597 211 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHP 290 (546)
Q Consensus 211 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 290 (546)
.+.....++.+|..++..|++++|+.+|+++++..+........+............+...+...+..+..+.....+.+
T Consensus 44 ~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 123 (411)
T 4a1s_A 44 GSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRL 123 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred hhHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCch
Confidence 47788889999999999999999999999999973321111111222222223333444444444444444433345678
Q ss_pred hHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC-----------------HHH
Q psy597 291 DVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGK-----------------YKE 353 (546)
Q Consensus 291 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~-----------------~~~ 353 (546)
..+.++..+|.+|...|++++|+.+|++++.+.+.. ++.+....++.++|.+|...|+ +++
T Consensus 124 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~ 201 (411)
T 4a1s_A 124 GEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQL--GDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTR 201 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh--hchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHH
Confidence 899999999999999999999999999999999887 6778889999999999999999 999
Q ss_pred HHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC
Q psy597 354 AEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQG 433 (546)
Q Consensus 354 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g 433 (546)
|+.++.+++.+.... .+++....++.++|.++...|++++|+.+|++++++.... ++......++.++|.+|...|
T Consensus 202 A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g 277 (411)
T 4a1s_A 202 AVEFYQENLKLMRDL--GDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF--GDRAAERRANSNLGNSHIFLG 277 (411)
T ss_dssp HHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHHCc
Confidence 999999999998777 5567788999999999999999999999999999998775 445667779999999999999
Q ss_pred CHHHHHHHHHHHHHhhhhcccC--cccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q psy597 434 KYKEAEILYKQVLTRAHEREFG--ACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK 511 (546)
Q Consensus 434 ~~~eA~~~~~~al~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~ 511 (546)
++++|+.+|++++...+..... ........+.++...|++++|..++++++.+..... +.+....++..+|.+|..
T Consensus 278 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~ 355 (411)
T 4a1s_A 278 QFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG--DRIGEARACWSLGNAHSA 355 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC--ChHHHHHHHHHHHHHHHH
Confidence 9999999999999988754221 123445566778899999999999999999987763 356778899999999999
Q ss_pred cCCHHHHHHHHHHHHHHhhhh
Q psy597 512 QGKYKEAEILYKQVLTRAHER 532 (546)
Q Consensus 512 ~g~~~~A~~~~~~al~~~~~~ 532 (546)
.|++++|..+|++++++.++.
T Consensus 356 ~g~~~~A~~~~~~al~~~~~~ 376 (411)
T 4a1s_A 356 IGGHERALKYAEQHLQLAXXX 376 (411)
T ss_dssp TTCHHHHHHHHHHHHHHCCHH
T ss_pred hccHHHHHHHHHHHHHHHhhc
Confidence 999999999999999988654
No 4
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.93 E-value=7.6e-24 Score=214.51 Aligned_cols=311 Identities=15% Similarity=0.103 Sum_probs=246.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHH
Q psy597 214 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVA 293 (546)
Q Consensus 214 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 293 (546)
....+..+|.++...|++++|+.+|+++++..+........+............+...+......+..+.....+.+..+
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 35567778888888888888888888888763221110111111222222233333444444444333333345678889
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC--------------------HHH
Q psy597 294 TMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGK--------------------YKE 353 (546)
Q Consensus 294 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~--------------------~~~ 353 (546)
.++..+|.+|...|++++|+.++.+++.+.+.. ++.+..+.++..+|.+|...|+ +++
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISREL--NDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--ccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 999999999999999999999999999999887 6677788899999999999999 999
Q ss_pred HHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC
Q psy597 354 AEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQG 433 (546)
Q Consensus 354 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g 433 (546)
|+.++.+++.+.... ++++..+.++.++|.++...|++++|+.+|++++.+.... ++.+..+.++.++|.+|...|
T Consensus 166 A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g 241 (406)
T 3sf4_A 166 AVDFYEENLSLVTAL--GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERRAYSNLGNAYIFLG 241 (406)
T ss_dssp HHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHHcC
Confidence 999999999998776 5567888999999999999999999999999999998775 456677889999999999999
Q ss_pred CHHHHHHHHHHHHHhhhhcccC--cccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q psy597 434 KYKEAEILYKQVLTRAHEREFG--ACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK 511 (546)
Q Consensus 434 ~~~eA~~~~~~al~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~ 511 (546)
++++|+.+|++++.+.+..... ........+.++...|++++|..++.+++.+.... .+.+....++..+|.+|..
T Consensus 242 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~la~~~~~ 319 (406)
T 3sf4_A 242 EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--NDRIGEGRACWSLGNAYTA 319 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHH
Confidence 9999999999999987764321 12344556777889999999999999999987765 3356778899999999999
Q ss_pred cCCHHHHHHHHHHHHHHhhhh
Q psy597 512 QGKYKEAEILYKQVLTRAHER 532 (546)
Q Consensus 512 ~g~~~~A~~~~~~al~~~~~~ 532 (546)
.|++++|+.+|++++++.+..
T Consensus 320 ~g~~~~A~~~~~~al~~~~~~ 340 (406)
T 3sf4_A 320 LGNHDQAMHFAEKHLEISREV 340 (406)
T ss_dssp HTCHHHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999997654
No 5
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.93 E-value=1.5e-23 Score=205.93 Aligned_cols=308 Identities=15% Similarity=0.108 Sum_probs=234.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHH--HHHhhhhhhHHHHHHHHHHHHhccCCCCChhH
Q psy597 215 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLED--CALRSRKESYDIVKQAKVAQILGSGGHDHPDV 292 (546)
Q Consensus 215 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~--~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 292 (546)
...++..|..+...|++++|+.+|+++++..+.. ....+..+.. .......+...+......+..+.....+.+..
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTED--LKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 82 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCccc--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHH
Confidence 4455666677777777777777777766652211 1111111111 11222222223333332222222223367788
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC--------------------HH
Q psy597 293 ATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGK--------------------YK 352 (546)
Q Consensus 293 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~--------------------~~ 352 (546)
+.++..+|.+|...|++++|+.++.+++.+.+.. ++.+....++..+|.++...|+ ++
T Consensus 83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 160 (338)
T 3ro2_A 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL--NDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQ 160 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHH
Confidence 9999999999999999999999999999999887 6677788899999999999999 99
Q ss_pred HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc
Q psy597 353 EAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ 432 (546)
Q Consensus 353 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~ 432 (546)
+|+.++++++.+.+.. ++.+....++.++|.++...|++++|+.++++++++.... ++.+....++.++|.+|...
T Consensus 161 ~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~ 236 (338)
T 3ro2_A 161 AAVDLYEENLSLVTAL--GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERRAYSNLGNAYIFL 236 (338)
T ss_dssp HHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHc
Confidence 9999999999998776 5567788899999999999999999999999999998776 44667788999999999999
Q ss_pred CCHHHHHHHHHHHHHhhhhcccC--cccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q psy597 433 GKYKEAEILYKQVLTRAHEREFG--ACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYL 510 (546)
Q Consensus 433 g~~~eA~~~~~~al~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~ 510 (546)
|++++|+.++++++...+..... ........+.++...|+++.|..++.+++.+..... +.+....++..+|.+|.
T Consensus 237 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~la~~~~ 314 (338)
T 3ro2_A 237 GEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK--DRIGEGRACWSLGNAYT 314 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHH
Confidence 99999999999999987764221 123344566678899999999999999999987663 35667889999999999
Q ss_pred HcCCHHHHHHHHHHHHHHhhhh
Q psy597 511 KQGKYKEAEILYKQVLTRAHER 532 (546)
Q Consensus 511 ~~g~~~~A~~~~~~al~~~~~~ 532 (546)
..|++++|..++++++++.++.
T Consensus 315 ~~g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 315 ALGNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp HHTCHHHHHHHHHHHHHC----
T ss_pred HcCChHHHHHHHHHHHHHHHhh
Confidence 9999999999999999987653
No 6
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.93 E-value=7.2e-24 Score=213.94 Aligned_cols=268 Identities=15% Similarity=0.097 Sum_probs=226.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHH
Q psy597 217 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATML 296 (546)
Q Consensus 217 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 296 (546)
.++..|..+...|+|++|+.+|++++....... +.+..+.++
T Consensus 105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~--------------------------------------~~~~~a~~~ 146 (383)
T 3ulq_A 105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVK--------------------------------------DRIEKAEFF 146 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCC--------------------------------------CHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCC--------------------------------------CHHHHHHHH
Confidence 456699999999999999999999998755433 567789999
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChH
Q psy597 297 NILALVYRDQNKYKEAANLLNDALTIREKTLGEN-HAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPD 375 (546)
Q Consensus 297 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 375 (546)
+.+|.+|...|++++|+.++.+++.+++.. ++ .+..+.++.++|.+|...|++++|+.+|++++++.++. ++++.
T Consensus 147 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~ 222 (383)
T 3ulq_A 147 FKMSESYYYMKQTYFSMDYARQAYEIYKEH--EAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE--KQPQL 222 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTC--STTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc--CChHH
Confidence 999999999999999999999999999876 44 67788999999999999999999999999999998877 55677
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccC
Q psy597 376 VAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFG 455 (546)
Q Consensus 376 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~ 455 (546)
.+.++.++|.+|...|++++|+.+|++++++.+.. .+.|..+.++.++|.+|..+|++++|+.++++++.+.+.....
T Consensus 223 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 300 (383)
T 3ulq_A 223 MGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEES--NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDV 300 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 88999999999999999999999999999998775 3337789999999999999999999999999999987653221
Q ss_pred ccc-CCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhcc
Q psy597 456 ACD-GDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREF 534 (546)
Q Consensus 456 ~~~-~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~~~~ 534 (546)
... .....+..+...|+. ..+.+|+..+.+. ...+....++..+|.+|...|++++|..+|++++++.+...-
T Consensus 301 ~~~~~~~~l~~~~~~~~~~----~~~~~al~~~~~~--~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i~~ 374 (383)
T 3ulq_A 301 IYLSEFEFLKSLYLSGPDE----EAIQGFFDFLESK--MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQG 374 (383)
T ss_dssp HHHHHHHHHHHHHTSSCCH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSCSS
T ss_pred HHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHC--cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc
Confidence 111 122344556666664 5677777777766 346778889999999999999999999999999999865443
No 7
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.92 E-value=3.3e-24 Score=216.65 Aligned_cols=291 Identities=23% Similarity=0.254 Sum_probs=203.9
Q ss_pred hhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-------------CchhHHHhhHHHHHhhhhhhHH
Q psy597 205 VNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTS-------------GKYEAAETLEDCALRSRKESYD 271 (546)
Q Consensus 205 ~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-------------~~~~~a~~~~~~~l~~~~~~~~ 271 (546)
......+|..+.+++.+|.+|...|++++|+..|++++...+... |+++.|...+..++...++...
T Consensus 57 ~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 136 (388)
T 1w3b_A 57 TLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYC 136 (388)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTH
T ss_pred HHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Confidence 333445677788899999999999999999999999887644321 4445555555444433222111
Q ss_pred HHHHH-----------HHHHHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy597 272 IVKQA-----------KVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNN 340 (546)
Q Consensus 272 ~~~~~-----------~~~~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~ 340 (546)
..... .+...+.......|..+.++..+|.++...|++++|+..|++++.+ .|....++..
T Consensus 137 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~ 208 (388)
T 1w3b_A 137 VRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--------DPNFLDAYIN 208 (388)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCcHHHHHH
Confidence 11000 0000000001123555667777788888888888888888887776 3444667778
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Q psy597 341 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAK 420 (546)
Q Consensus 341 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~ 420 (546)
+|.++...|++++|+..|.+++.+ +|....++.++|.++...|++++|+.+|++++++ .|..+.
T Consensus 209 lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~ 272 (388)
T 1w3b_A 209 LGNVLKEARIFDRAVAAYLRALSL--------SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--------QPHFPD 272 (388)
T ss_dssp HHHHHHTTTCTTHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------CSSCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHH
Confidence 888888888888888888888777 3666777888888888888888888888888876 666667
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHH
Q psy597 421 TKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAK 500 (546)
Q Consensus 421 ~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~ 500 (546)
++.++|.++...|++++|+.+|++++...|.+. ......+..+...|++++|...|++++.. .|....
T Consensus 273 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~ 340 (388)
T 1w3b_A 273 AYCNLANALKEKGSVAEAEDCYNTALRLCPTHA----DSLNNLANIKREQGNIEEAVRLYRKALEV--------FPEFAA 340 (388)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHTTTCHHHHHHHHHHHTTS--------CTTCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCcHH
Confidence 788888888888888888888888887755432 23445566677788888888888888765 566777
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q psy597 501 TKNNLASCYLKQGKYKEAEILYKQVLTRAHE 531 (546)
Q Consensus 501 ~~~~La~~y~~~g~~~~A~~~~~~al~~~~~ 531 (546)
++..+|.+|...|++++|+.+|++++++.|.
T Consensus 341 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~ 371 (388)
T 1w3b_A 341 AHSNLASVLQQQGKLQEALMHYKEAIRISPT 371 (388)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 8888999999999999999999988886654
No 8
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.91 E-value=3e-22 Score=201.74 Aligned_cols=268 Identities=17% Similarity=0.123 Sum_probs=220.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHH
Q psy597 215 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVAT 294 (546)
Q Consensus 215 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 294 (546)
...++..|..+...|+|++|+.+|++++...+... +.+..+.
T Consensus 101 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~--------------------------------------~~~~~a~ 142 (378)
T 3q15_A 101 YYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVS--------------------------------------DDIEKAE 142 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCC--------------------------------------CHHHHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCC--------------------------------------ChHHHHH
Confidence 34678899999999999999999999998765533 5678899
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q psy597 295 MLNILALVYRDQNKYKEAANLLNDALTIREKTLGEN-HAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEH 373 (546)
Q Consensus 295 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 373 (546)
+++.+|.+|...|+++.|+.++.+++.+++.. ++ .+..+.++.++|.+|...|++++|+.+|.+++++.++. ++.
T Consensus 143 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~--~~~ 218 (378)
T 3q15_A 143 FHFKVAEAYYHMKQTHVSMYHILQALDIYQNH--PLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI--QND 218 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS--TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhC--CCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc--CCH
Confidence 99999999999999999999999999998875 33 45678999999999999999999999999999998776 455
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcc
Q psy597 374 PDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHERE 453 (546)
Q Consensus 374 ~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~ 453 (546)
+..+.++.++|.+|...|++++|+.+|++++.+++.. .+|..+.++.++|.+|..+|++++|+.++++++.+.+...
T Consensus 219 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 295 (378)
T 3q15_A 219 RFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREK---VPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARS 295 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTC
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh---CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC
Confidence 6778899999999999999999999999999988765 2556689999999999999999999999999999876533
Q ss_pred cCcccC-CChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Q psy597 454 FGACDG-DNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 532 (546)
Q Consensus 454 ~~~~~~-~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~~ 532 (546)
...... .......+...++. ..+.+|+..+.+. ...+....++..+|.+|...|++++|..+|+++++..+..
T Consensus 296 ~~~~~~~~~~l~~ly~~~~~~----~~~~~al~~~~~~--~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~ 369 (378)
T 3q15_A 296 HKFYKELFLFLQAVYKETVDE----RKIHDLLSYFEKK--NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDI 369 (378)
T ss_dssp CSCHHHHHHHHHHHHSSSCCH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHhC--CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 211111 11111122233332 5567777776653 3357778889999999999999999999999999987654
Q ss_pred c
Q psy597 533 E 533 (546)
Q Consensus 533 ~ 533 (546)
.
T Consensus 370 ~ 370 (378)
T 3q15_A 370 L 370 (378)
T ss_dssp H
T ss_pred h
Confidence 3
No 9
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.91 E-value=1.2e-21 Score=198.15 Aligned_cols=296 Identities=16% Similarity=0.115 Sum_probs=243.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHH--hhhhhhHHHHHHHHHHHHhccCCCCChh
Q psy597 214 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCAL--RSRKESYDIVKQAKVAQILGSGGHDHPD 291 (546)
Q Consensus 214 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l--~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (546)
...++..+|.+|...|++++|+.+|++++...+........+..+...+. ....+...+......+..+.....+.+.
T Consensus 46 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 125 (406)
T 3sf4_A 46 LSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVG 125 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccc
Confidence 46889999999999999999999999999998887666555555544443 2333344444444444433333345677
Q ss_pred HHHHHHHHHHHHHHhhc--------------------HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCH
Q psy597 292 VATMLNILALVYRDQNK--------------------YKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKY 351 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~--------------------~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~ 351 (546)
.+.++..+|.+|...|+ +++|+.++.+++.+.... ++.+..+.++.++|.+|...|++
T Consensus 126 ~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~ 203 (406)
T 3sf4_A 126 EARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTAL--GDRAAQGRAFGNLGNTHYLLGNF 203 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTBH
T ss_pred hHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHHHccCH
Confidence 78899999999999999 999999999999998887 67788899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q psy597 352 KEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK 431 (546)
Q Consensus 352 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~ 431 (546)
++|+.++++++.+.... ++++..+.++.++|.++...|++++|+.+|++++.+.... ++.+....++.++|.+|..
T Consensus 204 ~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~ 279 (406)
T 3sf4_A 204 RDAVIAHEQRLLIAKEF--GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGNTYTL 279 (406)
T ss_dssp HHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhC--cCchHHHHHHHHHHHHHHH
Confidence 99999999999998775 4456678899999999999999999999999999998765 4456678899999999999
Q ss_pred cCCHHHHHHHHHHHHHhhhhccc--CcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q psy597 432 QGKYKEAEILYKQVLTRAHEREF--GACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCY 509 (546)
Q Consensus 432 ~g~~~eA~~~~~~al~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y 509 (546)
.|++++|+.+|++++.+.+.... .........+.++...|++.+|..++.+++.+.... .+.+....++..+|.++
T Consensus 280 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~ 357 (406)
T 3sf4_A 280 LQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV--GDKSGELTARLNLSDLQ 357 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--cCCcchhHHHHHHHHHH
Confidence 99999999999999998765422 112344456777889999999999999999998766 33677889999999999
Q ss_pred HHcCCHHH
Q psy597 510 LKQGKYKE 517 (546)
Q Consensus 510 ~~~g~~~~ 517 (546)
...|+...
T Consensus 358 ~~~g~~~~ 365 (406)
T 3sf4_A 358 MVLGLSYS 365 (406)
T ss_dssp HHHHTTSC
T ss_pred HHhhHhHH
Confidence 99998744
No 10
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.90 E-value=3.5e-23 Score=207.14 Aligned_cols=249 Identities=17% Similarity=0.174 Sum_probs=203.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhH
Q psy597 213 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDV 292 (546)
Q Consensus 213 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 292 (546)
.....++.+|..+...|++++|+.+|++++.. .|..
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------------------------------------------~p~~ 98 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQ--------------------------------------------DPGD 98 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--------------------------------------------CTTC
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------------------------------------------CcCC
Confidence 34556899999999999999999999999984 3555
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q psy597 293 ATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKE 372 (546)
Q Consensus 293 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 372 (546)
+.+++.+|.+|...|++++|+.+|++++.+ .|....++..+|.+|...|++++|+.+|++++.+........
T Consensus 99 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 170 (365)
T 4eqf_A 99 AEAWQFLGITQAENENEQAAIVALQRCLEL--------QPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLV 170 (365)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHH
Confidence 778999999999999999999999999988 344577899999999999999999999999999852221000
Q ss_pred Ch--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 373 HP--DVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSN--VAKTKNNLASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 373 ~~--~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~--~~~~~~~La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
.. .....+..+|.++...|++++|+.+|++++.+ .|. .+.++.++|.+|...|++++|+.+|++++..
T Consensus 171 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 242 (365)
T 4eqf_A 171 KNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ--------NGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV 242 (365)
T ss_dssp ------------------CCHHHHHHHHHHHHHHHH--------SCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh--------CcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 00 01233445699999999999999999999998 555 6778999999999999999999999999998
Q ss_pred hhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 449 AHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 528 (546)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~ 528 (546)
.+... ......+.++...|++++|...|++++.+ .|....++..+|.+|...|++++|+.+|++++++
T Consensus 243 ~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 243 RPEDY----SLWNRLGATLANGDRSEEAVEAYTRALEI--------QPGFIRSRYNLGISCINLGAYREAVSNFLTALSL 310 (365)
T ss_dssp CTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 66532 34566777799999999999999999988 6777889999999999999999999999999999
Q ss_pred hhhhc
Q psy597 529 AHERE 533 (546)
Q Consensus 529 ~~~~~ 533 (546)
.|+..
T Consensus 311 ~~~~~ 315 (365)
T 4eqf_A 311 QRKSR 315 (365)
T ss_dssp HHCC-
T ss_pred CcccC
Confidence 98643
No 11
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.90 E-value=7.4e-23 Score=206.69 Aligned_cols=287 Identities=17% Similarity=0.146 Sum_probs=226.5
Q ss_pred hHHHhhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHH
Q psy597 200 QFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVA 279 (546)
Q Consensus 200 ~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~ 279 (546)
+..........+|.++.++..+|.++...|++++|+.+++++++..+... .+............+...+...+..+
T Consensus 18 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~a 93 (388)
T 1w3b_A 18 AERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLA----EAYSNLGNVYKERGQLQEAIEHYRHA 93 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCch----HHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 33333444445677788899999999999999999999999988643221 12222222222222233333333222
Q ss_pred HHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy597 280 QILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCK 359 (546)
Q Consensus 280 ~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 359 (546)
.. ..|....++..+|.++...|++++|+..|++++.. .|....++..+|.++...|++++|+.+|+
T Consensus 94 l~------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 94 LR------LKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--------NPDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp HH------HCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--------CTTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HH------cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 22 23566778999999999999999999999999987 34556788899999999999999999999
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHH
Q psy597 360 RALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAE 439 (546)
Q Consensus 360 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~ 439 (546)
+++.. .|....++.++|.++...|++++|+.+|++++.+ +|....++.++|.++...|++++|+
T Consensus 160 ~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~ 223 (388)
T 1w3b_A 160 KAIET--------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--------DPNFLDAYINLGNVLKEARIFDRAV 223 (388)
T ss_dssp HHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCTTHHH
T ss_pred HHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 99987 4777889999999999999999999999999998 7788889999999999999999999
Q ss_pred HHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHH
Q psy597 440 ILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAE 519 (546)
Q Consensus 440 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~ 519 (546)
..|++++...|... ......+..+...|++++|...|++++.. .|....++..+|.+|...|++++|+
T Consensus 224 ~~~~~al~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~ 291 (388)
T 1w3b_A 224 AAYLRALSLSPNHA----VVHGNLACVYYEQGLIDLAIDTYRRAIEL--------QPHFPDAYCNLANALKEKGSVAEAE 291 (388)
T ss_dssp HHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------CSSCHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHhhCcCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 99999998865432 33455677788999999999999999976 6667788999999999999999999
Q ss_pred HHHHHHHHHhhhh
Q psy597 520 ILYKQVLTRAHER 532 (546)
Q Consensus 520 ~~~~~al~~~~~~ 532 (546)
.+|+++++..|..
T Consensus 292 ~~~~~al~~~p~~ 304 (388)
T 1w3b_A 292 DCYNTALRLCPTH 304 (388)
T ss_dssp HHHHHHHHHCTTC
T ss_pred HHHHHHHhhCccc
Confidence 9999999987654
No 12
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.90 E-value=4.6e-23 Score=190.68 Aligned_cols=200 Identities=21% Similarity=0.213 Sum_probs=168.6
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChh
Q psy597 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPD 291 (546)
Q Consensus 212 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (546)
|.++.+++.+|.++...|++++|+..|+++++ ..|.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--------------------------------------------~~p~ 37 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALK--------------------------------------------ENPQ 37 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHT--------------------------------------------TSSS
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------------------------------hCCC
Confidence 55667899999999999999999999999997 4677
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc-----------CCHHHHHHHHHH
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKR-----------GKYKEAEPLCKR 360 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~ 360 (546)
.+.+++.+|.++...|++++|+..|++++.+ .|....++.++|.++... |++++|+..|++
T Consensus 38 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 109 (217)
T 2pl2_A 38 DPEALYWLARTQLKLGLVNPALENGKTLVAR--------TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKD 109 (217)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHH
Confidence 7889999999999999999999999999998 455578999999999999 999999999999
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHH
Q psy597 361 ALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEI 440 (546)
Q Consensus 361 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~ 440 (546)
++++ .|....++.++|.++...|++++|+..|++++++ + ..+.++.++|.+|...|++++|+.
T Consensus 110 al~~--------~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~-~~~~~~~~la~~~~~~g~~~~A~~ 172 (217)
T 2pl2_A 110 AERV--------NPRYAPLHLQRGLVYALLGERDKAEASLKQALAL--------E-DTPEIRSALAELYLSMGRLDEALA 172 (217)
T ss_dssp HHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C-CCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHh--------CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------c-cchHHHHHHHHHHHHcCCHHHHHH
Confidence 9998 4888899999999999999999999999999999 4 567889999999999999999999
Q ss_pred HHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Q psy597 441 LYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEI 520 (546)
Q Consensus 441 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~ 520 (546)
.|++++.. .|....++..+|.++...|++++|+.
T Consensus 173 ~~~~al~~----------------------------------------------~P~~~~~~~~la~~~~~~g~~~~A~~ 206 (217)
T 2pl2_A 173 QYAKALEQ----------------------------------------------APKDLDLRVRYASALLLKGKAEEAAR 206 (217)
T ss_dssp HHHHHHHH----------------------------------------------STTCHHHHHHHHHHHTC---------
T ss_pred HHHHHHHh----------------------------------------------CCCChHHHHHHHHHHHHccCHHHHHH
Confidence 99999986 56667788999999999999999999
Q ss_pred HHHHHH
Q psy597 521 LYKQVL 526 (546)
Q Consensus 521 ~~~~al 526 (546)
+|+++-
T Consensus 207 ~~~~~~ 212 (217)
T 2pl2_A 207 AAALEH 212 (217)
T ss_dssp ------
T ss_pred HHHHHh
Confidence 998764
No 13
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=4.8e-22 Score=204.59 Aligned_cols=296 Identities=15% Similarity=0.124 Sum_probs=212.8
Q ss_pred hhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-------------cCchhHHHhhHHHHHhhhhhhHH
Q psy597 205 VNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKT-------------SGKYEAAETLEDCALRSRKESYD 271 (546)
Q Consensus 205 ~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-------------~~~~~~a~~~~~~~l~~~~~~~~ 271 (546)
......+|..+..++.+|..++..|++++|+.+|+++++..+.. .+.++.|...+..++...+....
T Consensus 16 ~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 95 (450)
T 2y4t_A 16 ENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTA 95 (450)
T ss_dssp -------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred cccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence 33445567777777888888888888888888887777643221 14555555555555443322221
Q ss_pred HHHHH-----------HHHHHhccCCCCChhHH---HHH------------HHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q psy597 272 IVKQA-----------KVAQILGSGGHDHPDVA---TML------------NILALVYRDQNKYKEAANLLNDALTIREK 325 (546)
Q Consensus 272 ~~~~~-----------~~~~~l~~~~~~~~~~~---~~~------------~~la~~~~~~g~~~~A~~~~~~al~~~~~ 325 (546)
..... .+...+.......|... .++ ..+|.++...|++++|+.+|++++..
T Consensus 96 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--- 172 (450)
T 2y4t_A 96 ARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV--- 172 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence 11100 01111111111223222 333 34477788899999999999998876
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 326 TLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALE 405 (546)
Q Consensus 326 ~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 405 (546)
.|....++..+|.+|...|++++|+.+|++++... |....++..+|.+|...|++++|+.+|++++.
T Consensus 173 -----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 239 (450)
T 2y4t_A 173 -----CVWDAELRELRAECFIKEGEPRKAISDLKAASKLK--------NDNTEAFYKISTLYYQLGDHELSLSEVRECLK 239 (450)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH--------CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34446789999999999999999999999999885 66678999999999999999999999999998
Q ss_pred HHHHhcCCCChHHHHHHHH------------HHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchh
Q psy597 406 IYELKLGPDDSNVAKTKNN------------LASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKA 473 (546)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~------------La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (546)
+ .|....++.. +|.++...|++++|+.+|++++...+.+...........+.++...|++
T Consensus 240 ~--------~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~ 311 (450)
T 2y4t_A 240 L--------DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKP 311 (450)
T ss_dssp H--------CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCH
T ss_pred h--------CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCH
Confidence 7 4444444443 3999999999999999999999976553221122345566778899999
Q ss_pred hHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Q psy597 474 KNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 532 (546)
Q Consensus 474 ~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~~ 532 (546)
++|...+.+++.. .|....++..+|.+|...|++++|+.+|++++++.|+.
T Consensus 312 ~~A~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 362 (450)
T 2y4t_A 312 VEAIRVCSEVLQM--------EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEND 362 (450)
T ss_dssp HHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSC
T ss_pred HHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcch
Confidence 9999999999987 67778899999999999999999999999999987764
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.90 E-value=9.1e-22 Score=195.36 Aligned_cols=294 Identities=16% Similarity=0.128 Sum_probs=220.6
Q ss_pred hHHHhhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHH
Q psy597 200 QFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVA 279 (546)
Q Consensus 200 ~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~ 279 (546)
+...+.......|..+.+++.+|.++...|++++|+..|+++++..+... .+............+...+......+
T Consensus 22 A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~ 97 (359)
T 3ieg_A 22 ALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFT----AARLQRGHLLLKQGKLDEAEDDFKKV 97 (359)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcc----hHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 44444444445677788999999999999999999999999998644322 11111122222222222222222222
Q ss_pred HHhccCCCCCh---hHHHHHHHH------------HHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy597 280 QILGSGGHDHP---DVATMLNIL------------ALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVL 344 (546)
Q Consensus 280 ~~l~~~~~~~~---~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~ 344 (546)
. ...| ....++..+ |.++...|++++|+..+++++... |....++..+|.+
T Consensus 98 ~------~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~ 163 (359)
T 3ieg_A 98 L------KSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC--------VWDAELRELRAEC 163 (359)
T ss_dssp H------TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHH
T ss_pred H------hcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCchHHHHHHHHH
Confidence 1 1234 444555544 799999999999999999999873 3446789999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH---
Q psy597 345 YGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKT--- 421 (546)
Q Consensus 345 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~--- 421 (546)
+...|++++|+.++++++.. .|....++..+|.++...|++++|+.+|+++++.. ++.+.....
T Consensus 164 ~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-----~~~~~~~~~~~~ 230 (359)
T 3ieg_A 164 FIKEGEPRKAISDLKAASKL--------KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-----QDHKRCFAHYKQ 230 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHTT--------CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----ccchHHHHHHHH
Confidence 99999999999999999987 36677899999999999999999999999999871 223322221
Q ss_pred ------HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCC
Q psy597 422 ------KNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDD 495 (546)
Q Consensus 422 ------~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~ 495 (546)
...+|.++...|++++|+..|++++...+.............+.++...|+++.|...|.+++.. .
T Consensus 231 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~ 302 (359)
T 3ieg_A 231 VKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM--------E 302 (359)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------C
Confidence 23558999999999999999999999876533222222334667788999999999999999987 6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Q psy597 496 SNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 532 (546)
Q Consensus 496 ~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~~ 532 (546)
|....++..+|.+|...|++++|..+|++++++.|+.
T Consensus 303 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~ 339 (359)
T 3ieg_A 303 PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEND 339 (359)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 7778899999999999999999999999999987654
No 15
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.90 E-value=2.5e-21 Score=182.91 Aligned_cols=241 Identities=15% Similarity=0.135 Sum_probs=210.2
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChh
Q psy597 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPD 291 (546)
Q Consensus 212 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (546)
+..+..+..+|.+++..|++++|+.+|+++++. . .
T Consensus 2 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~-----------------------------------------~----~ 36 (258)
T 3uq3_A 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWEL-----------------------------------------H----K 36 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------------------------------S----C
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----------------------------------------h----c
Confidence 467889999999999999999999999999985 1 3
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 371 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 371 (546)
.+.++..+|.++...|++++|+.++.+++.+.+.. +++.+..+.++..+|.++...|++++|+.+|++++.+.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------ 109 (258)
T 3uq3_A 37 DITYLNNRAAAEYEKGEYETAISTLNDAVEQGREM-RADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH------ 109 (258)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------
T ss_pred cHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc-ccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC------
Confidence 35679999999999999999999999999997664 12445558899999999999999999999999999973
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 372 EHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 372 ~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
|. +.++...|++++|+..+++++.. .|....++..+|.++...|++++|+.+|++++...+.
T Consensus 110 --~~--------~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~ 171 (258)
T 3uq3_A 110 --RT--------ADILTKLRNAEKELKKAEAEAYV--------NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE 171 (258)
T ss_dssp --CC--------HHHHHHHHHHHHHHHHHHHHHHC--------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred --ch--------hHHHHHHhHHHHHHHHHHHHHHc--------CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc
Confidence 32 45677888999999999999987 8999999999999999999999999999999998655
Q ss_pred cccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q psy597 452 REFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 531 (546)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~ 531 (546)
.. ......+.++...|++++|...+.+++.. .|....++..+|.+|...|++++|..+|++++++.++
T Consensus 172 ~~----~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 239 (258)
T 3uq3_A 172 DA----RGYSNRAAALAKLMSFPEAIADCNKAIEK--------DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAE 239 (258)
T ss_dssp CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChh
Confidence 32 34555677788999999999999999987 6777889999999999999999999999999999966
Q ss_pred hcc
Q psy597 532 REF 534 (546)
Q Consensus 532 ~~~ 534 (546)
...
T Consensus 240 ~~~ 242 (258)
T 3uq3_A 240 VNN 242 (258)
T ss_dssp HHT
T ss_pred hcC
Confidence 543
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.89 E-value=6.9e-23 Score=201.24 Aligned_cols=279 Identities=13% Similarity=0.078 Sum_probs=220.3
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChh
Q psy597 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPD 291 (546)
Q Consensus 212 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (546)
|.++..+..+|..++..|+|++|+.+|+++++..+....... .....+....+...+......+.. ..|.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~----~~~~~~~~~~~~~~A~~~~~~~~~------~~~~ 88 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLP----VHIGTLVELNKANELFYLSHKLVD------LYPS 88 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHH----HHHHHHHHHTCHHHHHHHHHHHHH------HCTT
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHH----HHHHHHHHhhhHHHHHHHHHHHHH------hCcC
Confidence 444567888999999999999999999999876544332111 111111122222222222222211 2355
Q ss_pred HHHHHHHHHHHHHHhh-cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q psy597 292 VATMLNILALVYRDQN-KYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 370 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 370 (546)
.+.++..+|.++...| ++++|+.+|++++.. .|....++..+|.++...|++++|+.+|++++...
T Consensus 89 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----- 155 (330)
T 3hym_B 89 NPVSWFAVGCYYLMVGHKNEHARRYLSKATTL--------EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM----- 155 (330)
T ss_dssp STHHHHHHHHHHHHSCSCHHHHHHHHHHHHTT--------CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-----
T ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-----
Confidence 5678999999999999 999999999999976 34446789999999999999999999999999984
Q ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q psy597 371 KEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAH 450 (546)
Q Consensus 371 ~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~ 450 (546)
|....++..+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+.++++++...+
T Consensus 156 ---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 224 (330)
T 3hym_B 156 ---KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI--------APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIK 224 (330)
T ss_dssp ---TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred ---cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhh
Confidence 556677888999999999999999999999987 677788999999999999999999999999999876
Q ss_pred hcccC-----cccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy597 451 EREFG-----ACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQV 525 (546)
Q Consensus 451 ~~~~~-----~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~a 525 (546)
..... ........+.++...|++++|...|++++.. .|....++..+|.+|...|++++|..+|+++
T Consensus 225 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 296 (330)
T 3hym_B 225 AIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL--------IPQNASTYSAIGYIHSLMGNFENAVDYFHTA 296 (330)
T ss_dssp TTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCSHHHHHHHHHHHHHTCHHHHHHHHHTT
T ss_pred hccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh--------CccchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 53322 1223445667788999999999999999987 5667889999999999999999999999999
Q ss_pred HHHhhhh
Q psy597 526 LTRAHER 532 (546)
Q Consensus 526 l~~~~~~ 532 (546)
+++.|+.
T Consensus 297 l~~~p~~ 303 (330)
T 3hym_B 297 LGLRRDD 303 (330)
T ss_dssp TTTCSCC
T ss_pred HccCCCc
Confidence 9887654
No 17
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.89 E-value=1e-22 Score=194.62 Aligned_cols=251 Identities=13% Similarity=0.134 Sum_probs=208.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHH
Q psy597 215 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVAT 294 (546)
Q Consensus 215 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 294 (546)
+..++..|.+++..|++++|+..|+++++. .|....
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--------------------------------------------~p~~~~ 38 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAK--------------------------------------------KYNSPY 38 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHT--------------------------------------------TCCCST
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------------------------------------------CCCcHH
Confidence 457889999999999999999999999983 344455
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q psy597 295 MLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHP 374 (546)
Q Consensus 295 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 374 (546)
++..+|.+|...|++++|+.+|++++... ++......++..+|.++...|++++|+.+|+++++.. |
T Consensus 39 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~--------~ 105 (272)
T 3u4t_A 39 IYNRRAVCYYELAKYDLAQKDIETYFSKV-----NATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD--------T 105 (272)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHTTS-----CTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------T
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcc-----CchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--------c
Confidence 78999999999999999999999999731 2233347789999999999999999999999999983 6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhccc
Q psy597 375 DVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREF 454 (546)
Q Consensus 375 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~ 454 (546)
....++..+|.++...|++++|+.+|++++++ .|....++.++|......+++++|+..|++++...|...
T Consensus 106 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~- 176 (272)
T 3u4t_A 106 TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--------TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIY- 176 (272)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH-
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccch-
Confidence 67789999999999999999999999999987 677788999999555556799999999999999866542
Q ss_pred CcccCCChhhHHHHhhch---hhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q psy597 455 GACDGDNKPIWQDRQKNK---AKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 531 (546)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~---~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~ 531 (546)
......+.++...++ ++.|...|++++........+.......++..+|.+|...|++++|+.+|++++++.|+
T Consensus 177 ---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 253 (272)
T 3u4t_A 177 ---IGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPT 253 (272)
T ss_dssp ---HHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred ---HHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc
Confidence 233445666777777 88899999999988654322212335678999999999999999999999999999887
Q ss_pred hcc
Q psy597 532 REF 534 (546)
Q Consensus 532 ~~~ 534 (546)
++.
T Consensus 254 ~~~ 256 (272)
T 3u4t_A 254 NKK 256 (272)
T ss_dssp CHH
T ss_pred HHH
Confidence 643
No 18
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.89 E-value=2.9e-22 Score=200.70 Aligned_cols=244 Identities=12% Similarity=0.008 Sum_probs=207.5
Q ss_pred CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCC
Q psy597 208 GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGH 287 (546)
Q Consensus 208 ~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 287 (546)
....|....++..+|.++...|++++|+..|++++.+
T Consensus 90 i~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l------------------------------------------- 126 (382)
T 2h6f_A 90 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIEL------------------------------------------- 126 (382)
T ss_dssp ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH-------------------------------------------
T ss_pred hhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHh-------------------------------------------
Confidence 3557999999999999999999999999999999984
Q ss_pred CChhHHHHHHHHHHHHHHhhc-HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNK-YKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE 366 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 366 (546)
.|....+|+.+|.++...|+ +++|+..|++++.+ .|....+|+++|.++...|++++|+.+|++++++
T Consensus 127 -~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l--------~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~l-- 195 (382)
T 2h6f_A 127 -NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--------QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ-- 195 (382)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--
T ss_pred -CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--
Confidence 57778899999999999997 99999999999998 4556889999999999999999999999999999
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH-cCCHHHH-----HH
Q psy597 367 KVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK-QGKYKEA-----EI 440 (546)
Q Consensus 367 ~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~-~g~~~eA-----~~ 440 (546)
+|....+|+++|.++...|++++|+.+|++++++ +|....+|+++|.++.. .|.+++| +.
T Consensus 196 ------dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--------~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~ 261 (382)
T 2h6f_A 196 ------DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--------DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQ 261 (382)
T ss_dssp ------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHH
T ss_pred ------CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHH
Confidence 4888999999999999999999999999999999 89999999999999999 5655888 59
Q ss_pred HHHHHHHhhhhcccCcccCCChhhHHHHhhc--hhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcC-----
Q psy597 441 LYKQVLTRAHEREFGACDGDNKPIWQDRQKN--KAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQG----- 513 (546)
Q Consensus 441 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g----- 513 (546)
+|++++.+.|.+. ..+...++++...| ++.+|...+.++ . ..|....++..+|.+|..+|
T Consensus 262 ~~~~Al~l~P~~~----~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--------~~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 262 YTLEMIKLVPHNE----SAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--------PSHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp HHHHHHHHSTTCH----HHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--------TTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHCCCCH----HHHHHHHHHHHccCccchHHHHHHHHHh-c--------cCCCCHHHHHHHHHHHHHHhccccc
Confidence 9999999866543 23344455555555 466666655443 2 25667889999999999985
Q ss_pred ---C-HHHHHHHHHHH-HHHhhhh
Q psy597 514 ---K-YKEAEILYKQV-LTRAHER 532 (546)
Q Consensus 514 ---~-~~~A~~~~~~a-l~~~~~~ 532 (546)
+ +++|+.+|+++ +++.|..
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~DP~r 352 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKDTIR 352 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred chHHHHHHHHHHHHHHHHHhCchh
Confidence 3 58999999998 7766543
No 19
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.88 E-value=2.6e-21 Score=206.67 Aligned_cols=280 Identities=13% Similarity=0.053 Sum_probs=224.8
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChh
Q psy597 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPD 291 (546)
Q Consensus 212 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (546)
|.+..++..+|..|...|++++|+.+|+++++..+.... +.......+....+...+......... ..|.
T Consensus 302 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~ 371 (597)
T 2xpi_A 302 EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLD----VYPLHLASLHESGEKNKLYLISNDLVD------RHPE 371 (597)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCT----THHHHHHHHHHHTCHHHHHHHHHHHHH------HCTT
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHH----HHHHHHHHHHHhCCHHHHHHHHHHHHh------hCcc
Confidence 678899999999999999999999999999976443221 111111112222222222222222211 2355
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 371 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 371 (546)
...++..+|.+|...|++++|+.+|++++.+ .|....++..+|.+|...|++++|+.+|++++...
T Consensus 372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------ 437 (597)
T 2xpi_A 372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTM--------DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF------ 437 (597)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT------
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------
Confidence 6778999999999999999999999999987 34446789999999999999999999999999773
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 372 EHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 372 ~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
|....++..+|.+|...|++++|+.+|+++++. .|....++..+|.+|...|++++|+.+|++++...+.
T Consensus 438 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 507 (597)
T 2xpi_A 438 --QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--------FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKK 507 (597)
T ss_dssp --TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred --ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhc
Confidence 666788999999999999999999999999988 5666788999999999999999999999999998765
Q ss_pred cccCc---ccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 452 REFGA---CDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 528 (546)
Q Consensus 452 ~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~ 528 (546)
.+... .......+..+...|++++|...|++++.. .|....++..+|.+|...|++++|..+|++++++
T Consensus 508 ~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 508 TQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL--------STNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp SCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 32221 234556777799999999999999999987 5666789999999999999999999999999999
Q ss_pred hhhhc
Q psy597 529 AHERE 533 (546)
Q Consensus 529 ~~~~~ 533 (546)
.|++.
T Consensus 580 ~p~~~ 584 (597)
T 2xpi_A 580 SPNEI 584 (597)
T ss_dssp CTTCH
T ss_pred CCCCh
Confidence 87653
No 20
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.88 E-value=3.6e-20 Score=180.11 Aligned_cols=218 Identities=54% Similarity=0.772 Sum_probs=196.5
Q ss_pred CCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy597 286 GHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 365 (546)
Q Consensus 286 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 365 (546)
+.++|..+.++..+|.++...|++++|+.+|++++.+.....+++.+....++..+|.+|...|++++|+.+|++++.+.
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 99 (311)
T 3nf1_A 20 GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR 99 (311)
T ss_dssp CTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 66789999999999999999999999999999999999888767889999999999999999999999999999999999
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy597 366 EKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQV 445 (546)
Q Consensus 366 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~a 445 (546)
++..+++++....++.++|.++...|++++|+.+|++++++.....+++++....++.++|.+|...|++++|+.+|+++
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 179 (311)
T 3nf1_A 100 EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRA 179 (311)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99988888999999999999999999999999999999999988888888999999999999999999999999999999
Q ss_pred HHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy597 446 LTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQV 525 (546)
Q Consensus 446 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~a 525 (546)
+... ....+++++....++..+|.+|...|++++|+.+++++
T Consensus 180 ~~~~--------------------------------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 221 (311)
T 3nf1_A 180 LEIY--------------------------------------QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEI 221 (311)
T ss_dssp HHHH--------------------------------------HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHH--------------------------------------HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8752 23334457888899999999999999999999999999
Q ss_pred HHHhhhhccCCCCCCC
Q psy597 526 LTRAHEREFGACDGDN 541 (546)
Q Consensus 526 l~~~~~~~~~~~~~~~ 541 (546)
++..++..++...+..
T Consensus 222 l~~~~~~~~~~~~~~~ 237 (311)
T 3nf1_A 222 LTRAHEREFGSVDDEN 237 (311)
T ss_dssp HHHHHHHHHC------
T ss_pred HHHHHHhcCCCCCcch
Confidence 9999887766554443
No 21
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.88 E-value=7.7e-22 Score=197.37 Aligned_cols=269 Identities=13% Similarity=0.039 Sum_probs=209.1
Q ss_pred hhhHHHhhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHH
Q psy597 198 PSQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAK 277 (546)
Q Consensus 198 ~~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~ 277 (546)
..+...+.......|..+.+++.+|.+|...|++++|+..|+++++.
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------------------------------- 128 (365)
T 4eqf_A 82 PVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLEL--------------------------------- 128 (365)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------------------
T ss_pred HHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---------------------------------
Confidence 34444455555556788899999999999999999999999999984
Q ss_pred HHHHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHHHHcCCHHHHH
Q psy597 278 VAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHA--AVAATLNNLAVLYGKRGKYKEAE 355 (546)
Q Consensus 278 ~~~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~--~~~~~~~~la~~~~~~g~~~~A~ 355 (546)
.|....++..+|.+|...|++++|+.+|++++.+.+........ .....+..+|.++...|++++|+
T Consensus 129 -----------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 197 (365)
T 4eqf_A 129 -----------QPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVK 197 (365)
T ss_dssp -----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHH
T ss_pred -----------CCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHH
Confidence 35557789999999999999999999999999985443111000 12344556799999999999999
Q ss_pred HHHHHHHHHHHHhcCCCChH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC
Q psy597 356 PLCKRALEIREKVLGKEHPD--VAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQG 433 (546)
Q Consensus 356 ~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g 433 (546)
.+|++++... |. ...++.++|.++...|++++|+.+|++++++ .|....++.++|.+|...|
T Consensus 198 ~~~~~al~~~--------p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g 261 (365)
T 4eqf_A 198 ELYLEAAHQN--------GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV--------RPEDYSLWNRLGATLANGD 261 (365)
T ss_dssp HHHHHHHHHS--------CSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhC--------cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcC
Confidence 9999999984 55 6778999999999999999999999999998 7777889999999999999
Q ss_pred CHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHHH
Q psy597 434 KYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDS----NVAKTKNNLASCY 509 (546)
Q Consensus 434 ~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~----~~~~~~~~La~~y 509 (546)
++++|+.+|++++...|.. .......+.++...|++.+|...|.+++.+.....++.++ ....++..++.++
T Consensus 262 ~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 337 (365)
T 4eqf_A 262 RSEEAVEAYTRALEIQPGF----IRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIAL 337 (365)
T ss_dssp CHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHH
Confidence 9999999999999986543 2345567777999999999999999999986543332111 1367889999999
Q ss_pred HHcCCHHHHHHHHHHHHHHhh
Q psy597 510 LKQGKYKEAEILYKQVLTRAH 530 (546)
Q Consensus 510 ~~~g~~~~A~~~~~~al~~~~ 530 (546)
...|+.+.|..+..+.+..+.
T Consensus 338 ~~~g~~~~a~~~~~~~l~~~~ 358 (365)
T 4eqf_A 338 SLMDQPELFQAANLGDLDVLL 358 (365)
T ss_dssp HHHTCHHHHHHHHTTCCGGGT
T ss_pred HHcCcHHHHHHHHHhhHHHHH
Confidence 999999999988888666553
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.87 E-value=2.3e-21 Score=193.84 Aligned_cols=237 Identities=19% Similarity=0.200 Sum_probs=205.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHH
Q psy597 215 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVAT 294 (546)
Q Consensus 215 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 294 (546)
...++.+|.++...|++++|+.+|+++++ ..|....
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~--------------------------------------------~~p~~~~ 99 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQ--------------------------------------------QDPKHME 99 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHH--------------------------------------------SCTTCHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHH--------------------------------------------hCCCCHH
Confidence 45688999999999999999999999998 3466678
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q psy597 295 MLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHP 374 (546)
Q Consensus 295 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 374 (546)
++..+|.++...|++++|+.+|++++.+. |....++..+|.++...|++++|+.+|++++... |
T Consensus 100 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~ 163 (368)
T 1fch_A 100 AWQYLGTTQAENEQELLAISALRRCLELK--------PDNQTALMALAVSFTNESLQRQACEILRDWLRYT--------P 163 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--------T
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------c
Confidence 89999999999999999999999999883 4457789999999999999999999999999874 2
Q ss_pred HHHHHH----------------HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChH--HHHHHHHHHHHHHHcCCHH
Q psy597 375 DVAKQL----------------NNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSN--VAKTKNNLASCYLKQGKYK 436 (546)
Q Consensus 375 ~~~~~~----------------~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~--~~~~~~~La~~y~~~g~~~ 436 (546)
.....+ ..++.++ ..|++++|+.+|++++.+ .|. .+.++.++|.+|...|+++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~~~l~~~~~~~g~~~ 234 (368)
T 1fch_A 164 AYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRL--------DPTSIDPDVQCGLGVLFNLSGEYD 234 (368)
T ss_dssp TTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHH--------STTSCCHHHHHHHHHHHHHTTCHH
T ss_pred CcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHh--------CcCcccHHHHHHHHHHHHHcCCHH
Confidence 222222 2567776 999999999999999998 666 6789999999999999999
Q ss_pred HHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHH
Q psy597 437 EAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYK 516 (546)
Q Consensus 437 eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~ 516 (546)
+|+.+|++++...+... ......+.++...|++++|...|.+++.+ .|....++..+|.+|...|+++
T Consensus 235 ~A~~~~~~al~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~g~~~ 302 (368)
T 1fch_A 235 KAVDCFTAALSVRPNDY----LLWNKLGATLANGNQSEEAVAAYRRALEL--------QPGYIRSRYNLGISCINLGAHR 302 (368)
T ss_dssp HHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHhCcCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHH
Confidence 99999999999865432 34556677789999999999999999987 6777889999999999999999
Q ss_pred HHHHHHHHHHHHhhhh
Q psy597 517 EAEILYKQVLTRAHER 532 (546)
Q Consensus 517 ~A~~~~~~al~~~~~~ 532 (546)
+|+.+|++++++.|..
T Consensus 303 ~A~~~~~~al~~~~~~ 318 (368)
T 1fch_A 303 EAVEHFLEALNMQRKS 318 (368)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCCC
Confidence 9999999999998865
No 23
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.87 E-value=1.4e-21 Score=191.81 Aligned_cols=214 Identities=19% Similarity=0.082 Sum_probs=183.0
Q ss_pred hhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHh
Q psy597 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRG-KYKEAEPLCKRALEIREKV 368 (546)
Q Consensus 290 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~ 368 (546)
|....++..++.++...|++++|+.++.+++.. .|....++..+|.++...| ++++|+.+|++++..
T Consensus 53 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~---- 120 (330)
T 3hym_B 53 PFHASCLPVHIGTLVELNKANELFYLSHKLVDL--------YPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTL---- 120 (330)
T ss_dssp TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTT----
T ss_pred CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh----
Confidence 444556778889999999999999999999987 3444678999999999999 999999999999987
Q ss_pred cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 369 LGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 369 ~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
.|....++..+|.++...|++++|+.+|++++.. .|....++..+|.+|...|++++|+.+|++++..
T Consensus 121 ----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 188 (330)
T 3hym_B 121 ----EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL--------MKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI 188 (330)
T ss_dssp ----CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------TTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ----CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------ccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 3667788999999999999999999999999998 6666677888999999999999999999999998
Q ss_pred hhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 449 AHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDD-SNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 527 (546)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~-~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~ 527 (546)
.+... ......+.++...|++++|...+.+++........... +....++..+|.+|...|++++|+.+|+++++
T Consensus 189 ~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 264 (330)
T 3hym_B 189 APEDP----FVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALV 264 (330)
T ss_dssp CTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCCh----HHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 65532 34556677789999999999999999988654432211 45567899999999999999999999999999
Q ss_pred Hhhh
Q psy597 528 RAHE 531 (546)
Q Consensus 528 ~~~~ 531 (546)
..|.
T Consensus 265 ~~~~ 268 (330)
T 3hym_B 265 LIPQ 268 (330)
T ss_dssp HSTT
T ss_pred hCcc
Confidence 8765
No 24
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.87 E-value=1.3e-20 Score=198.42 Aligned_cols=241 Identities=19% Similarity=0.147 Sum_probs=209.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHH
Q psy597 215 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVAT 294 (546)
Q Consensus 215 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 294 (546)
+.++..+|.++...|++++|+..|++++.. .|. ..
T Consensus 243 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--------------------------------------------~~~-~~ 277 (537)
T 3fp2_A 243 ALALCYTGIFHFLKNNLLDAQVLLQESINL--------------------------------------------HPT-PN 277 (537)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------------------------CCC-HH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------------------------------------------CCC-ch
Confidence 567999999999999999999999999984 233 67
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q psy597 295 MLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHP 374 (546)
Q Consensus 295 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 374 (546)
++..+|.++...|++++|+.+|++++... |....++..+|.++...|++++|+.+|++++... |
T Consensus 278 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------~ 341 (537)
T 3fp2_A 278 SYIFLALTLADKENSQEFFKFFQKAVDLN--------PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN--------P 341 (537)
T ss_dssp HHHHHHHHTCCSSCCHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------T
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhccC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------C
Confidence 89999999999999999999999999873 4446789999999999999999999999999983 6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhccc
Q psy597 375 DVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREF 454 (546)
Q Consensus 375 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~ 454 (546)
....++..+|.++...|++++|+.+|+++++. .|....++..+|.++...|++++|+.+|++++...+....
T Consensus 342 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 413 (537)
T 3fp2_A 342 ENVYPYIQLACLLYKQGKFTESEAFFNETKLK--------FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK 413 (537)
T ss_dssp TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh
Confidence 66788999999999999999999999999998 6777788999999999999999999999999998876543
Q ss_pred CcccC--CChhhHHHHhh----------chhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q psy597 455 GACDG--DNKPIWQDRQK----------NKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILY 522 (546)
Q Consensus 455 ~~~~~--~~~~~~~~~~~----------~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~ 522 (546)
..... ....+.++... |++++|...|.+++.. .|....++..+|.+|...|++++|+.+|
T Consensus 414 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 485 (537)
T 3fp2_A 414 IHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--------DPRSEQAKIGLAQLKLQMEKIDEAIELF 485 (537)
T ss_dssp CSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhccHHHHHHHH
Confidence 32221 12334557777 9999999999999987 6777789999999999999999999999
Q ss_pred HHHHHHhhhh
Q psy597 523 KQVLTRAHER 532 (546)
Q Consensus 523 ~~al~~~~~~ 532 (546)
++++++.|..
T Consensus 486 ~~al~~~~~~ 495 (537)
T 3fp2_A 486 EDSAILARTM 495 (537)
T ss_dssp HHHHHHC--C
T ss_pred HHHHHhCCCc
Confidence 9999988754
No 25
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.87 E-value=8.2e-20 Score=174.75 Aligned_cols=205 Identities=41% Similarity=0.529 Sum_probs=188.3
Q ss_pred CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCC
Q psy597 208 GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGH 287 (546)
Q Consensus 208 ~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 287 (546)
+.++|..+.++..+|.+|...|++++|+.+|.++++...... +.
T Consensus 36 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~------------------------------------~~ 79 (283)
T 3edt_B 36 GHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTL------------------------------------GK 79 (283)
T ss_dssp CSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT------------------------------------CT
T ss_pred CCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHc------------------------------------CC
Confidence 346799999999999999999999999999999999877765 45
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
+++..+.++..+|.+|...|++++|+.+|.+++.+.+...++++|....++.++|.+|...|++++|+.+|++++.+.+.
T Consensus 80 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 159 (283)
T 3edt_B 80 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYAT 159 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999888888999999999999999999999999999999999999
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc------------------------------------
Q psy597 368 VLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKL------------------------------------ 411 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~------------------------------------ 411 (546)
..++++|....++.++|.++...|++++|+.+|++++.+.....
T Consensus 160 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (283)
T 3edt_B 160 RLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGS 239 (283)
T ss_dssp HSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC---------
T ss_pred hcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 98888999999999999999999999999999999999855421
Q ss_pred -----CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 412 -----GPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 412 -----~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
+.++|....++..+|.+|..+|++++|+.+|++++++
T Consensus 240 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 240 WYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1256888899999999999999999999999999874
No 26
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.87 E-value=1.2e-21 Score=195.79 Aligned_cols=271 Identities=16% Similarity=0.141 Sum_probs=217.3
Q ss_pred ChhhHHHhhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHH
Q psy597 197 PPSQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQA 276 (546)
Q Consensus 197 ~~~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~ 276 (546)
...+...+.......|..+.++..+|.++...|++++|+..|+++++.
T Consensus 80 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------------------------------- 127 (368)
T 1fch_A 80 LPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLEL-------------------------------- 127 (368)
T ss_dssp HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------------
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhc--------------------------------
Confidence 344555555666667888899999999999999999999999999984
Q ss_pred HHHHHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCC--------HHHHHHHHHHHHHHHHc
Q psy597 277 KVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENH--------AAVAATLNNLAVLYGKR 348 (546)
Q Consensus 277 ~~~~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~--------~~~~~~~~~la~~~~~~ 348 (546)
.|....++..+|.+|...|++++|+..|++++...+....... ......+..++.++ ..
T Consensus 128 ------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 194 (368)
T 1fch_A 128 ------------KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SD 194 (368)
T ss_dssp ------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HH
T ss_pred ------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hc
Confidence 3455678999999999999999999999999987432100000 00011222567776 99
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCChH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q psy597 349 GKYKEAEPLCKRALEIREKVLGKEHPD--VAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLA 426 (546)
Q Consensus 349 g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La 426 (546)
|++++|+.+|++++... |. ...++.++|.++...|++++|+.+|++++.+ .|....++.++|
T Consensus 195 ~~~~~A~~~~~~a~~~~--------p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~l~ 258 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLD--------PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--------RPNDYLLWNKLG 258 (368)
T ss_dssp HHHHHHHHHHHHHHHHS--------TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC--------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcCCHHHHHHHH
Confidence 99999999999999884 55 6788999999999999999999999999998 677788999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCC---CCHHHHHHHH
Q psy597 427 SCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGP---DDSNVAKTKN 503 (546)
Q Consensus 427 ~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~---~~~~~~~~~~ 503 (546)
.++...|++++|+.+|++++...+... ......+.++...|++.+|...|.+++.+.....++ ..+....++.
T Consensus 259 ~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 334 (368)
T 1fch_A 259 ATLANGNQSEEAVAAYRRALELQPGYI----RSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWS 334 (368)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHH
Confidence 999999999999999999999865432 345567777999999999999999999885432110 1122378899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Q psy597 504 NLASCYLKQGKYKEAEILYKQVLTRAHER 532 (546)
Q Consensus 504 ~La~~y~~~g~~~~A~~~~~~al~~~~~~ 532 (546)
.+|.+|...|++++|..+++++++.+++.
T Consensus 335 ~l~~~~~~~g~~~~A~~~~~~~l~~~~~~ 363 (368)
T 1fch_A 335 TLRLALSMLGQSDAYGAADARDLSTLLTM 363 (368)
T ss_dssp HHHHHHHHHTCGGGHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhCChHhHHHhHHHHHHHHHHh
Confidence 99999999999999999999999987643
No 27
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.87 E-value=2.2e-20 Score=185.32 Aligned_cols=242 Identities=19% Similarity=0.188 Sum_probs=204.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHH
Q psy597 214 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVA 293 (546)
Q Consensus 214 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 293 (546)
++..++.+|..++..|+|++|+..|+++++. .|..+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--------------------------------------------~p~~~ 37 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDG--------------------------------------------DPDNY 37 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------------------------CTTCH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------------------------------------------CcccH
Confidence 4678999999999999999999999999984 34556
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q psy597 294 TMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEH 373 (546)
Q Consensus 294 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 373 (546)
.+++.+|.++...|++++|+..|++++.. .|....++..+|.++...|++++|+.+|++++...
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------- 101 (359)
T 3ieg_A 38 IAYYRRATVFLAMGKSKAALPDLTKVIAL--------KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-------- 101 (359)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSC--------
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcC--------
Confidence 78999999999999999999999999988 34446789999999999999999999999999873
Q ss_pred h---HHHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHH
Q psy597 374 P---DVAKQLNNL------------ALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEA 438 (546)
Q Consensus 374 ~---~~~~~~~~l------------a~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA 438 (546)
| ....++..+ |.++...|++++|+.+|+++++. .|....++..+|.++...|++++|
T Consensus 102 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~A 173 (359)
T 3ieg_A 102 PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV--------CVWDAELRELRAECFIKEGEPRKA 173 (359)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHCCCHHHH
Confidence 5 566666655 79999999999999999999998 677788999999999999999999
Q ss_pred HHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHH---------HHHHHHHH
Q psy597 439 EILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKT---------KNNLASCY 509 (546)
Q Consensus 439 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~---------~~~La~~y 509 (546)
+..+++++...+... ......+.++...|+++.|...+.+++... ++.+..... ...+|.++
T Consensus 174 ~~~~~~~~~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~ 244 (359)
T 3ieg_A 174 ISDLKAASKLKSDNT----EAFYKISTLYYQLGDHELSLSEVRECLKLD-----QDHKRCFAHYKQVKKLNKLIESAEEL 244 (359)
T ss_dssp HHHHHHHHTTCSCCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998755432 334566677889999999999999999761 223332222 23558899
Q ss_pred HHcCCHHHHHHHHHHHHHHhhhh
Q psy597 510 LKQGKYKEAEILYKQVLTRAHER 532 (546)
Q Consensus 510 ~~~g~~~~A~~~~~~al~~~~~~ 532 (546)
...|++++|+.+++++++..|..
T Consensus 245 ~~~~~~~~A~~~~~~~~~~~~~~ 267 (359)
T 3ieg_A 245 IRDGRYTDATSKYESVMKTEPSV 267 (359)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCSS
T ss_pred HHcCCHHHHHHHHHHHHhcCCCc
Confidence 99999999999999999987653
No 28
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.87 E-value=6.4e-20 Score=186.34 Aligned_cols=273 Identities=17% Similarity=0.198 Sum_probs=226.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHhhcHH
Q psy597 231 YEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYK 310 (546)
Q Consensus 231 ~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~ 310 (546)
...+..++..+.... ..++++.|...+..++... ..+....+.++..+|.+|...|+++
T Consensus 45 ~~~~~~l~~~g~~~~--~~g~~~~A~~~~~~al~~~-------------------~~~~~~~~~~~~~lg~~~~~~g~~~ 103 (411)
T 4a1s_A 45 SSMCLELALEGERLC--NAGDCRAGVAFFQAAIQAG-------------------TEDLRTLSAIYSQLGNAYFYLGDYN 103 (411)
T ss_dssp HHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHC-------------------CSCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred hHHHHHHHHHHHHHH--HhCcHHHHHHHHHHHHHhc-------------------ccChhHHHHHHHHHHHHHHHCCCHH
Confidence 445555554443322 2356666666666655432 2233445678999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc
Q psy597 311 EAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQ 390 (546)
Q Consensus 311 ~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 390 (546)
+|+.+|++++.+.+.. ++.+....++..+|.+|...|++++|+.+|++++.+.... .+++....++.++|.+|...
T Consensus 104 ~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~ 179 (411)
T 4a1s_A 104 KAMQYHKHDLTLAKSM--NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQL--GDRLSEGRALYNLGNVYHAK 179 (411)
T ss_dssp HHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh--hchHHHHHHHHHHHHHHHHc
Confidence 9999999999998887 6778889999999999999999999999999999998776 55688899999999999999
Q ss_pred CC-----------------HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcc
Q psy597 391 SK-----------------YEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHERE 453 (546)
Q Consensus 391 g~-----------------~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~ 453 (546)
|+ +++|+.+|++++++.... ++.+....++.++|.+|...|++++|+.+|++++.+.+...
T Consensus 180 g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (411)
T 4a1s_A 180 GKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDL--GDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG 257 (411)
T ss_dssp HHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC
Confidence 99 999999999999998777 45678888999999999999999999999999999887643
Q ss_pred c--CcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q psy597 454 F--GACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 531 (546)
Q Consensus 454 ~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~ 531 (546)
. .........+.++...|++++|...|++++.+.... .+......++..+|.+|...|++++|+.++++++.+.+.
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 335 (411)
T 4a1s_A 258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVEL--GEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE 335 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 2 111245566777999999999999999999997765 335566889999999999999999999999999999876
Q ss_pred h
Q psy597 532 R 532 (546)
Q Consensus 532 ~ 532 (546)
.
T Consensus 336 ~ 336 (411)
T 4a1s_A 336 L 336 (411)
T ss_dssp H
T ss_pred C
Confidence 5
No 29
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.87 E-value=1.2e-19 Score=182.82 Aligned_cols=302 Identities=13% Similarity=0.041 Sum_probs=228.8
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhH----H--HHHhhhhhhH-----------HHHH
Q psy597 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLE----D--CALRSRKESY-----------DIVK 274 (546)
Q Consensus 212 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~----~--~~l~~~~~~~-----------~~~~ 274 (546)
+..+....+-...+...+++++|..+++++.+..+....+.+...-+. + .......... ....
T Consensus 9 ~~~v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~ 88 (383)
T 3ulq_A 9 SSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLL 88 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHH
Confidence 456677777778889999999999999999887766543333221111 0 0111111111 1111
Q ss_pred HHHHHHHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHH
Q psy597 275 QAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEA 354 (546)
Q Consensus 275 ~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A 354 (546)
..... .. ..+.......++.+|.++...|++++|+.+|++++.+.+.. ++.+..+.++..+|.+|...|++++|
T Consensus 89 ~i~~~---~~-~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~~~~~~A 162 (383)
T 3ulq_A 89 EIDKK---QA-RLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFV--KDRIEKAEFFFKMSESYYYMKQTYFS 162 (383)
T ss_dssp HHHHH---TH-HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhc---CC-CchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 11110 00 00111223356669999999999999999999999987776 66777899999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCC
Q psy597 355 EPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGK 434 (546)
Q Consensus 355 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~ 434 (546)
+.++.+++++.++. +...+..+.++.++|.+|...|++++|+.+|++++++.... ++.+..+.++.++|.+|..+|+
T Consensus 163 ~~~~~~al~~~~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y~~~g~ 239 (383)
T 3ulq_A 163 MDYARQAYEIYKEH-EAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE--KQPQLMGRTLYNIGLCKNSQSQ 239 (383)
T ss_dssp HHHHHHHHHHHHTC-STTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhC-ccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc--CChHHHHHHHHHHHHHHHHCCC
Confidence 99999999998765 12257788999999999999999999999999999998877 5577888999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcc--cCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHc
Q psy597 435 YKEAEILYKQVLTRAHERE--FGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ 512 (546)
Q Consensus 435 ~~eA~~~~~~al~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~ 512 (546)
+++|+.+|++++.+..... ..........+.++...|+++.|..++.+++.+..... ++.....+..+|.+|...
T Consensus 240 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~l~~~~~~~ 316 (383)
T 3ulq_A 240 YEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAG---DVIYLSEFEFLKSLYLSG 316 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHhCC
Confidence 9999999999999866532 22234456677779999999999999999999987662 355555578899999999
Q ss_pred CC---HHHHHHHHHHH
Q psy597 513 GK---YKEAEILYKQV 525 (546)
Q Consensus 513 g~---~~~A~~~~~~a 525 (546)
|+ +++|+.++++.
T Consensus 317 ~~~~~~~~al~~~~~~ 332 (383)
T 3ulq_A 317 PDEEAIQGFFDFLESK 332 (383)
T ss_dssp CCHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHC
Confidence 99 66666665544
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.86 E-value=1.9e-21 Score=190.66 Aligned_cols=280 Identities=13% Similarity=0.063 Sum_probs=202.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHH
Q psy597 215 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVAT 294 (546)
Q Consensus 215 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 294 (546)
...++.+|..+...|++++|+.+|+++++..+... .+............+...+......+.. ..|....
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~------~~~~~~~ 90 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPERE----EAWRSLGLTQAENEKDGLAIIALNHARM------LDPKDIA 90 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCTTCHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHh------cCcCCHH
Confidence 34566667777777777777777777666433211 1111111111122222222222222221 1345567
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH--------------HH-HHHHcCCHHHHHHHHH
Q psy597 295 MLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNL--------------AV-LYGKRGKYKEAEPLCK 359 (546)
Q Consensus 295 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~l--------------a~-~~~~~g~~~~A~~~~~ 359 (546)
++..+|.++...|++++|+..|++++...+.. ...+..+ +. ++...|++++|+.+++
T Consensus 91 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 162 (327)
T 3cv0_A 91 VHAALAVSHTNEHNANAALASLRAWLLSQPQY--------EQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLH 162 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT--------TTC--------------------CCTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc--------HHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHH
Confidence 89999999999999999999999999874222 2223333 55 5888999999999999
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHH
Q psy597 360 RALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAE 439 (546)
Q Consensus 360 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~ 439 (546)
+++... |....++..+|.++...|++++|+.++++++.. .|....++..+|.++...|++++|+
T Consensus 163 ~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~ 226 (327)
T 3cv0_A 163 AALEMN--------PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--------RPDDAQLWNKLGATLANGNRPQEAL 226 (327)
T ss_dssp HHHHHS--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhhC--------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 999884 667889999999999999999999999999998 6777889999999999999999999
Q ss_pred HHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHHHHcCCH
Q psy597 440 ILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPD----DSNVAKTKNNLASCYLKQGKY 515 (546)
Q Consensus 440 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~----~~~~~~~~~~La~~y~~~g~~ 515 (546)
.+|++++...+... ......+.++...|+++.|...+++++.......... ......++..+|.++...|++
T Consensus 227 ~~~~~a~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 302 (327)
T 3cv0_A 227 DAYNRALDINPGYV----RVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRP 302 (327)
T ss_dssp HHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCCCH----HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCH
Confidence 99999999865432 2345667778999999999999999998732211100 001688999999999999999
Q ss_pred HHHHHHHHHHHHHhhhh
Q psy597 516 KEAEILYKQVLTRAHER 532 (546)
Q Consensus 516 ~~A~~~~~~al~~~~~~ 532 (546)
++|..+++++++..++.
T Consensus 303 ~~A~~~~~~~l~~~~~~ 319 (327)
T 3cv0_A 303 DLVELTYAQNVEPFAKE 319 (327)
T ss_dssp HHHHHHTTCCSHHHHHH
T ss_pred HHHHHHHHHHHHhcchh
Confidence 99999999999988765
No 31
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.86 E-value=1.7e-19 Score=176.87 Aligned_cols=237 Identities=19% Similarity=0.209 Sum_probs=206.5
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
+.+..+.++..+|.++...|++++|+.++++++.+.+.. ++.+..+.++..+|.++...|++++|+.++.+++.+...
T Consensus 38 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 115 (338)
T 3ro2_A 38 DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRE 115 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc--cccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 344457889999999999999999999999999998887 777888999999999999999999999999999999877
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q psy597 368 VLGKEHPDVAKQLNNLALLCQNQSK--------------------YEEVERYYQRALEIYELKLGPDDSNVAKTKNNLAS 427 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~~~g~--------------------~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~ 427 (546)
. ++.+....++..+|.++...|+ +++|+.++++++.+.... ++.+....++.++|.
T Consensus 116 ~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~ 191 (338)
T 3ro2_A 116 L--NDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTAL--GDRAAQGRAFGNLGN 191 (338)
T ss_dssp T--TCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHH
T ss_pred h--cCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHH
Confidence 6 4456678899999999999999 999999999999998776 456778889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhhhccc--CcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q psy597 428 CYLKQGKYKEAEILYKQVLTRAHEREF--GACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNL 505 (546)
Q Consensus 428 ~y~~~g~~~eA~~~~~~al~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~L 505 (546)
+|...|++++|+.++++++...+.... .........+..+...|++++|...+.+++.+.... .+.+....++..+
T Consensus 192 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l 269 (338)
T 3ro2_A 192 THYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSL 269 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh--cchhHHHHHHHHH
Confidence 999999999999999999998776432 112244556677889999999999999999987765 3356668899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHhhhh
Q psy597 506 ASCYLKQGKYKEAEILYKQVLTRAHER 532 (546)
Q Consensus 506 a~~y~~~g~~~~A~~~~~~al~~~~~~ 532 (546)
|.+|...|++++|..++++++.+.+..
T Consensus 270 a~~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 270 GNTYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999988764
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.86 E-value=6.5e-21 Score=186.82 Aligned_cols=207 Identities=19% Similarity=0.153 Sum_probs=174.9
Q ss_pred hhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q psy597 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 369 (546)
Q Consensus 290 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 369 (546)
|....++..+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+.++++++...
T Consensus 52 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---- 119 (327)
T 3cv0_A 52 PEREEAWRSLGLTQAENEKDGLAIIALNHARML--------DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ---- 119 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS----
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----
Confidence 556778899999999999999999999999987 34447789999999999999999999999999874
Q ss_pred CCCChHHHHHHHHH--------------HH-HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCC
Q psy597 370 GKEHPDVAKQLNNL--------------AL-LCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGK 434 (546)
Q Consensus 370 ~~~~~~~~~~~~~l--------------a~-~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~ 434 (546)
|.....+..+ +. ++...|++++|+.+++++++. .|....++..+|.+|...|+
T Consensus 120 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~ 187 (327)
T 3cv0_A 120 ----PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM--------NPNDAQLHASLGVLYNLSNN 187 (327)
T ss_dssp ----TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTC
T ss_pred ----CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhcc
Confidence 3333333333 55 688899999999999999998 67778899999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCC
Q psy597 435 YKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGK 514 (546)
Q Consensus 435 ~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~ 514 (546)
+++|+.++++++...+... ......+.++...|++++|...+.+++.. .|....++..+|.+|...|+
T Consensus 188 ~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 188 YDSAAANLRRAVELRPDDA----QLWNKLGATLANGNRPQEALDAYNRALDI--------NPGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhcc
Confidence 9999999999998865432 33456677788999999999999999987 56677889999999999999
Q ss_pred HHHHHHHHHHHHHHhhhh
Q psy597 515 YKEAEILYKQVLTRAHER 532 (546)
Q Consensus 515 ~~~A~~~~~~al~~~~~~ 532 (546)
+++|+.+|++++...|..
T Consensus 256 ~~~A~~~~~~a~~~~~~~ 273 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGG 273 (327)
T ss_dssp HHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhCCcc
Confidence 999999999999998773
No 33
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.85 E-value=1.6e-20 Score=175.86 Aligned_cols=208 Identities=18% Similarity=0.206 Sum_probs=162.8
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChh
Q psy597 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPD 291 (546)
Q Consensus 212 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (546)
...+..++.+|.++...|++++|+.+|+++++ ..|.
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~--------------------------------------------~~~~ 55 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIE--------------------------------------------ENKE 55 (243)
T ss_dssp ----------------------CCTTHHHHHT--------------------------------------------TCTT
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHH--------------------------------------------hCcc
Confidence 34567899999999999999999999999987 3455
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 371 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 371 (546)
...++..+|.++...|++++|+.+|++++... |....++..+|.++...|++++|+.++++++...
T Consensus 56 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------ 121 (243)
T 2q7f_A 56 DAIPYINFANLLSSVNELERALAFYDKALELD--------SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG------ 121 (243)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC------
Confidence 57889999999999999999999999999873 3447789999999999999999999999999884
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 372 EHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 372 ~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
|....++..+|.++...|++++|+.++++++.. .|....++..+|.++...|++++|+.+|++++..
T Consensus 122 --~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--- 188 (243)
T 2q7f_A 122 --MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--------NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQ--- 188 (243)
T ss_dssp --CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH---
T ss_pred --CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence 555778999999999999999999999999998 6667788999999999999999999999998875
Q ss_pred cccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q psy597 452 REFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 531 (546)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~ 531 (546)
.|....++..+|.+|...|++++|..+|++++++.|+
T Consensus 189 -------------------------------------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 225 (243)
T 2q7f_A 189 -------------------------------------------DPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD 225 (243)
T ss_dssp -------------------------------------------CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT
T ss_pred -------------------------------------------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc
Confidence 3334557788899999999999999999999888766
Q ss_pred hc
Q psy597 532 RE 533 (546)
Q Consensus 532 ~~ 533 (546)
..
T Consensus 226 ~~ 227 (243)
T 2q7f_A 226 HM 227 (243)
T ss_dssp CH
T ss_pred hH
Confidence 53
No 34
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.85 E-value=8.5e-20 Score=192.10 Aligned_cols=194 Identities=13% Similarity=0.168 Sum_probs=164.3
Q ss_pred hcHHHHHHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Q psy597 307 NKYKEAANLLNDALTIREKTLGENHAA----VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNN 382 (546)
Q Consensus 307 g~~~~A~~~~~~al~~~~~~~g~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 382 (546)
|++++|+..|++++... ++++. .+.++..+|.++...|++++|+.+|++++... |. ..++..
T Consensus 216 ~~~~~A~~~~~~~l~~~-----p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--------~~-~~~~~~ 281 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSAN-----TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--------PT-PNSYIF 281 (537)
T ss_dssp HHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------CC-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHC-----CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--------CC-chHHHH
Confidence 45666666666665543 33332 36689999999999999999999999999983 55 788999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCCh
Q psy597 383 LALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNK 462 (546)
Q Consensus 383 la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~ 462 (546)
+|.++...|++++|+.+|++++.. .|....++..+|.+|...|++++|+..|++++...+... .....
T Consensus 282 l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~~ 349 (537)
T 3fp2_A 282 LALTLADKENSQEFFKFFQKAVDL--------NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENV----YPYIQ 349 (537)
T ss_dssp HHHHTCCSSCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCS----HHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHhcc--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH----HHHHH
Confidence 999999999999999999999998 777788999999999999999999999999999865532 34556
Q ss_pred hhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhcc
Q psy597 463 PIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREF 534 (546)
Q Consensus 463 ~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~~~~ 534 (546)
.+.++...|++++|...+.+++.. .|....++..+|.+|...|++++|+.+|+++++..|....
T Consensus 350 la~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 413 (537)
T 3fp2_A 350 LACLLYKQGKFTESEAFFNETKLK--------FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK 413 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh
Confidence 677789999999999999999987 5666788999999999999999999999999999876543
No 35
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.85 E-value=9.1e-20 Score=172.05 Aligned_cols=212 Identities=19% Similarity=0.166 Sum_probs=185.7
Q ss_pred CchHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCC
Q psy597 210 EIPAR-LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHD 288 (546)
Q Consensus 210 ~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 288 (546)
.+|.. +.+++.+|.++...|++++|+.+|+++++.
T Consensus 31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-------------------------------------------- 66 (252)
T 2ho1_A 31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEI-------------------------------------------- 66 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHH--------------------------------------------
T ss_pred cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------------------------------------------
Confidence 34655 899999999999999999999999999984
Q ss_pred ChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy597 289 HPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 368 (546)
Q Consensus 289 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 368 (546)
.|....++..+|.++...|++++|+.+|++++... |....++..+|.++...|++++|+.+|++++.
T Consensus 67 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~----- 133 (252)
T 2ho1_A 67 DPSSADAHAALAVVFQTEMEPKLADEEYRKALASD--------SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ----- 133 (252)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-----
T ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh-----
Confidence 34456789999999999999999999999999873 33467899999999999999999999999987
Q ss_pred cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 369 LGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 369 ~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
.+..|....++..+|.++...|++++|+.+|++++.. .|....++..+|.+|...|++++|+.++++++..
T Consensus 134 -~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 204 (252)
T 2ho1_A 134 -DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--------NRNQPSVALEMADLLYKEREYVPARQYYDLFAQG 204 (252)
T ss_dssp -CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred -CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1335788899999999999999999999999999998 6666788999999999999999999999998875
Q ss_pred hhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 449 AHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 528 (546)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~ 528 (546)
.|....++..++.++...|++++|..+++++++.
T Consensus 205 ----------------------------------------------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 205 ----------------------------------------------GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp ----------------------------------------------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----------------------------------------------CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 2334556788999999999999999999999998
Q ss_pred hhhhc
Q psy597 529 AHERE 533 (546)
Q Consensus 529 ~~~~~ 533 (546)
.|+.+
T Consensus 239 ~p~~~ 243 (252)
T 2ho1_A 239 YPGSL 243 (252)
T ss_dssp CTTSH
T ss_pred CCCCH
Confidence 87653
No 36
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.85 E-value=1.3e-20 Score=197.02 Aligned_cols=245 Identities=17% Similarity=0.125 Sum_probs=215.8
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChh
Q psy597 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPD 291 (546)
Q Consensus 212 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (546)
|..+.+++.+|.++...|++++|+.+|+++++. .|.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--------------------------------------------~~~ 269 (514)
T 2gw1_A 234 EKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL--------------------------------------------FPR 269 (514)
T ss_dssp HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH--------------------------------------------CCC
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--------------------------------------------Ccc
Confidence 888999999999999999999999999999984 233
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 371 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 371 (546)
..++..+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+.+|++++...
T Consensus 270 -~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------ 334 (514)
T 2gw1_A 270 -VNSYIYMALIMADRNDSTEYYNYFDKALKL--------DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD------ 334 (514)
T ss_dssp -HHHHHHHHHHHHTSSCCTTGGGHHHHHHTT--------CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC------
T ss_pred -HHHHHHHHHHHHHCCCHHHHHHHHHHHhhc--------CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC------
Confidence 888999999999999999999999999876 34446689999999999999999999999999873
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 372 EHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 372 ~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
|....++..+|.++...|++++|+.+|++++.. .|....++..+|.+|...|++++|+.+|++++...+.
T Consensus 335 --~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 404 (514)
T 2gw1_A 335 --PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--------FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENK 404 (514)
T ss_dssp --SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--------STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred --hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 556778999999999999999999999999988 6666788999999999999999999999999998776
Q ss_pred cccCc--ccCCChhhHHHHh---hchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy597 452 REFGA--CDGDNKPIWQDRQ---KNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526 (546)
Q Consensus 452 ~~~~~--~~~~~~~~~~~~~---~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al 526 (546)
..... .......+.++.. .|+++.|...|.+++.. .|....++..+|.+|...|++++|..+|++++
T Consensus 405 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 476 (514)
T 2gw1_A 405 LDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL--------DPRSEQAKIGLAQMKLQQEDIDEAITLFEESA 476 (514)
T ss_dssp SSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 53221 1245566777888 99999999999999987 66677899999999999999999999999999
Q ss_pred HHhhhhc
Q psy597 527 TRAHERE 533 (546)
Q Consensus 527 ~~~~~~~ 533 (546)
++.|+.+
T Consensus 477 ~~~~~~~ 483 (514)
T 2gw1_A 477 DLARTME 483 (514)
T ss_dssp HHCSSHH
T ss_pred HhccccH
Confidence 9887653
No 37
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.85 E-value=7e-20 Score=164.26 Aligned_cols=172 Identities=16% Similarity=0.170 Sum_probs=157.2
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 371 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 371 (546)
.+.+|+.+|.+|...|++++|+..|++++++ +|....++..+|.+|...|++++|+..+.+++...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~------ 69 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--------DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD------ 69 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------
Confidence 4678999999999999999999999999988 45557899999999999999999999999999883
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 372 EHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 372 ~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
|....++..+|.++...++++.|...+.+++.+ .|....++..+|.+|..+|++++|+..|+++++.
T Consensus 70 --~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~--------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~--- 136 (184)
T 3vtx_A 70 --TTSAEAYYILGSANFMIDEKQAAIDALQRAIAL--------NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI--- 136 (184)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred --chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh---
Confidence 677888999999999999999999999999998 7888889999999999999999999999999886
Q ss_pred cccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q psy597 452 REFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 531 (546)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~ 531 (546)
+|....++.++|.+|..+|++++|+.+|++|+++.|.
T Consensus 137 -------------------------------------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 173 (184)
T 3vtx_A 137 -------------------------------------------KPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEK 173 (184)
T ss_dssp -------------------------------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHH
T ss_pred -------------------------------------------cchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCcc
Confidence 5666788999999999999999999999999999887
Q ss_pred hc
Q psy597 532 RE 533 (546)
Q Consensus 532 ~~ 533 (546)
+.
T Consensus 174 ~a 175 (184)
T 3vtx_A 174 KA 175 (184)
T ss_dssp HH
T ss_pred CH
Confidence 63
No 38
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.85 E-value=2.8e-19 Score=190.87 Aligned_cols=286 Identities=12% Similarity=0.061 Sum_probs=221.2
Q ss_pred CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHh-----------h-----HHHHHhh--------
Q psy597 210 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAET-----------L-----EDCALRS-------- 265 (546)
Q Consensus 210 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~-----------~-----~~~~l~~-------- 265 (546)
..|.++.+++.+|.+|...|++++|+..|+++++..+.....+..... . +......
T Consensus 195 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 274 (597)
T 2xpi_A 195 GIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSL 274 (597)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHH
Confidence 347789999999999999999999999999998864332210000000 0 0000000
Q ss_pred ----hhhhHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy597 266 ----RKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNL 341 (546)
Q Consensus 266 ----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~l 341 (546)
............+...+..... .+....++..+|.+|...|++++|+.+|++++... |....++..+
T Consensus 275 ~~~~~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~l 345 (597)
T 2xpi_A 275 YMLKLNKTSHEDELRRAEDYLSSING-LEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID--------PYNLDVYPLH 345 (597)
T ss_dssp HHTTSCTTTTHHHHHHHHHHHHTSTT-GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCCTTHHHH
T ss_pred HHHHHHHHcCcchHHHHHHHHHHhhc-CCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC--------cccHHHHHHH
Confidence 0000001111122222332222 25667889999999999999999999999999763 3345678899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Q psy597 342 AVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKT 421 (546)
Q Consensus 342 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~ 421 (546)
+.++...|++++|...+.+++.. .|....++..+|.+|...|++++|+.+|++++++ .|....+
T Consensus 346 ~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~ 409 (597)
T 2xpi_A 346 LASLHESGEKNKLYLISNDLVDR--------HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM--------DPQFGPA 409 (597)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--------CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhh--------CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCCHHH
Confidence 99999999999999999999976 3777889999999999999999999999999998 7777889
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHH
Q psy597 422 KNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKT 501 (546)
Q Consensus 422 ~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~ 501 (546)
+..+|.+|...|++++|+.+|++++...+.+ .......+..+...|++++|...|.+++.. .|....+
T Consensus 410 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~ 477 (597)
T 2xpi_A 410 WIGFAHSFAIEGEHDQAISAYTTAARLFQGT----HLPYLFLGMQHMQLGNILLANEYLQSSYAL--------FQYDPLL 477 (597)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTTTC----SHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCccc----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHH
Confidence 9999999999999999999999999875542 233455667788999999999999999976 4556678
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Q psy597 502 KNNLASCYLKQGKYKEAEILYKQVLTRAHER 532 (546)
Q Consensus 502 ~~~La~~y~~~g~~~~A~~~~~~al~~~~~~ 532 (546)
+..+|.+|...|++++|+.+|+++++..++.
T Consensus 478 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 508 (597)
T 2xpi_A 478 LNELGVVAFNKSDMQTAINHFQNALLLVKKT 508 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc
Confidence 9999999999999999999999999997654
No 39
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.84 E-value=1.3e-19 Score=175.52 Aligned_cols=196 Identities=12% Similarity=0.015 Sum_probs=163.2
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChh
Q psy597 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPD 291 (546)
Q Consensus 212 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (546)
..-...+...|.+|...|+|++|+..|.+++++.+..+ +.+.
T Consensus 34 ~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~--------------------------------------~~~~ 75 (292)
T 1qqe_A 34 EEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAG--------------------------------------NEDE 75 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTT--------------------------------------CHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC--------------------------------------CHHH
Confidence 34456677788999999999999999999999877654 5567
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhcC
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKR-GKYKEAEPLCKRALEIREKVLG 370 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~ 370 (546)
.+.++..+|.+|...|++++|+.+|++++.+.+.. ++....+.++.++|.+|... |++++|+.+|++++++....
T Consensus 76 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~--g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~-- 151 (292)
T 1qqe_A 76 AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR--GQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD-- 151 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhC--
Confidence 78899999999999999999999999999999876 56666788999999999996 99999999999999998543
Q ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q psy597 371 KEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDD-SNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRA 449 (546)
Q Consensus 371 ~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~-~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~ 449 (546)
++......++.++|.++..+|++++|+.+|++++++.... +.. .....++.++|.++..+|++++|+.+|++++.+.
T Consensus 152 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 229 (292)
T 1qqe_A 152 QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN--RLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED 229 (292)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC--TTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-
T ss_pred CChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcC--CcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 2223446789999999999999999999999999873111 000 1344578999999999999999999999999876
Q ss_pred hh
Q psy597 450 HE 451 (546)
Q Consensus 450 ~~ 451 (546)
|.
T Consensus 230 p~ 231 (292)
T 1qqe_A 230 PN 231 (292)
T ss_dssp --
T ss_pred CC
Confidence 54
No 40
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.84 E-value=8.9e-19 Score=175.71 Aligned_cols=276 Identities=11% Similarity=-0.001 Sum_probs=216.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHH
Q psy597 214 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVA 293 (546)
Q Consensus 214 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 293 (546)
...++..+|.++...|++++|...+.+++...+..+ +.....
T Consensus 52 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--------------------------------------~~~~~~ 93 (373)
T 1hz4_A 52 RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHD--------------------------------------VWHYAL 93 (373)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT--------------------------------------CHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcC--------------------------------------cHHHHH
Confidence 456788899999999999999999999998877644 445567
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q psy597 294 TMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEH 373 (546)
Q Consensus 294 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 373 (546)
.++..+|.++...|++++|+.++++++.+.+...+..++....++.++|.++...|++++|..++++++.+.... .+
T Consensus 94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~ 170 (373)
T 1hz4_A 94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY---QP 170 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS---CG
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc---Cc
Confidence 788999999999999999999999999999887444457788899999999999999999999999999986432 12
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 374 PDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVA--KTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 374 ~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~--~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
+....++.++|.++...|++++|..++++++.+.... + .+... .....++.++...|++++|..++++++...+.
T Consensus 171 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 247 (373)
T 1hz4_A 171 QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG--K-YHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFA 247 (373)
T ss_dssp GGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS--C-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc--C-cchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCC
Confidence 3356788999999999999999999999999885432 1 22122 22234566788999999999999998865432
Q ss_pred cccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q psy597 452 REFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 531 (546)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~ 531 (546)
............+..+...|++.+|...+.+++...... +..+....++..+|.++...|++++|..++++++.+.+.
T Consensus 248 ~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 248 NNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSL--RLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 325 (373)
T ss_dssp TCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--cchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence 111100112344556888899999999999999887653 223345568899999999999999999999999999887
Q ss_pred hccC
Q psy597 532 REFG 535 (546)
Q Consensus 532 ~~~~ 535 (546)
.++.
T Consensus 326 ~g~~ 329 (373)
T 1hz4_A 326 TGFI 329 (373)
T ss_dssp HCCC
T ss_pred ccHH
Confidence 5543
No 41
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.84 E-value=2.8e-19 Score=185.20 Aligned_cols=287 Identities=17% Similarity=0.100 Sum_probs=209.2
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCcCCCCCCCCChhhH
Q psy597 122 ANTQQKLQSSEQANSQLEEEKKHLEFMSSIRKYDSDIQGDENSGDQKSDKHKQDDPVVDLFPDEDNDDRNNLSPTPPSQF 201 (546)
Q Consensus 122 a~~~~~l~~~~~~~~qlee~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 201 (546)
+.++..|+..+...+++++++++++-...+.+-...
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~-------------------------------------------- 86 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHA-------------------------------------------- 86 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSG--------------------------------------------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCc--------------------------------------------
Confidence 556777788888888888888877665555322111
Q ss_pred HHhhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHH
Q psy597 202 AQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQI 281 (546)
Q Consensus 202 ~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~ 281 (546)
...+|..+.++.++|.+|...|++++|+.+|++++++.+...
T Consensus 87 ------~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~-------------------------------- 128 (472)
T 4g1t_A 87 ------DQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS-------------------------------- 128 (472)
T ss_dssp ------GGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC--------------------------------
T ss_pred ------cccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc--------------------------------
Confidence 011244567899999999999999999999999999988766
Q ss_pred hccCCCCChhHHHHHHHHHHHHHHh--hcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---HHHcCCHHHHHH
Q psy597 282 LGSGGHDHPDVATMLNILALVYRDQ--NKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVL---YGKRGKYKEAEP 356 (546)
Q Consensus 282 l~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~---~~~~g~~~~A~~ 356 (546)
...++..+.++..+|.++... ++|++|+.+|++++.+. |..+.++..+|.+ +...+++++|+.
T Consensus 129 ----~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--------p~~~~~~~~~~~~~~~l~~~~~~~~al~ 196 (472)
T 4g1t_A 129 ----SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--------PKNPEFTSGLAIASYRLDNWPPSQNAID 196 (472)
T ss_dssp ----CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHHHHSCCCCCTHH
T ss_pred ----cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhcCchHHHHHHH
Confidence 445566777888888877665 57999999999999883 3334556666665 445678889999
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc
Q psy597 357 LCKRALEIREKVLGKEHPDVAKQLNNLALLCQN----QSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ 432 (546)
Q Consensus 357 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~ 432 (546)
.|++++++ +|....++.++|..+.. .|++++|+.+|++++.+ +|....++.++|.+|...
T Consensus 197 ~~~~al~l--------~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~--------~~~~~~~~~~lg~~~~~~ 260 (472)
T 4g1t_A 197 PLRQAIRL--------NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK--------APGVTDVLRSAAKFYRRK 260 (472)
T ss_dssp HHHHHHHH--------CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHT
T ss_pred HHHHHhhc--------CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh--------CccHHHHHHHHHHHHHHc
Confidence 99999988 36666777777766554 56788999999999988 778888899999999999
Q ss_pred CCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHh-------------------hchhhHHHHHHHHHHHHHHHHcCC
Q psy597 433 GKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQ-------------------KNKAKNREKYYQRALEIYELKLGP 493 (546)
Q Consensus 433 g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~A~~~~~~Al~~~~~~~~~ 493 (546)
|++++|+..|++++...|.... ....++.++.. ...+..|...+.+++..
T Consensus 261 ~~~~~A~~~~~~al~~~p~~~~----~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~------- 329 (472)
T 4g1t_A 261 DEPDKAIELLKKALEYIPNNAY----LHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA------- 329 (472)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHH----HHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred CchHHHHHHHHHHHHhCCChHH----HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc-------
Confidence 9999999999999988665321 12222322221 22344455555555544
Q ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q psy597 494 DDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAH 530 (546)
Q Consensus 494 ~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~ 530 (546)
.|....++..+|.+|...|++++|+.+|++++++.+
T Consensus 330 -~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~ 365 (472)
T 4g1t_A 330 -NDNLFRVCSILASLHALADQYEEAEYYFQKEFSKEL 365 (472)
T ss_dssp -CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCC
T ss_pred -CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence 566667788888888888888888888888887654
No 42
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.84 E-value=3e-19 Score=164.87 Aligned_cols=212 Identities=17% Similarity=0.153 Sum_probs=181.4
Q ss_pred CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCC
Q psy597 210 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDH 289 (546)
Q Consensus 210 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 289 (546)
..|..+.++..+|.++...|++++|+.+|+++++. .
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------------------------------------------~ 38 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKS--------------------------------------------D 38 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------------------------C
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------------------------------------------C
Confidence 45788999999999999999999999999999984 3
Q ss_pred hhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHh
Q psy597 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKR-GKYKEAEPLCKRALEIREKV 368 (546)
Q Consensus 290 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~ 368 (546)
|....++..+|.++...|++++|+.+|++++... |....++..+|.++... |++++|+.++++++. .
T Consensus 39 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~--- 106 (225)
T 2vq2_A 39 PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK--------PDSAEINNNYGWFLCGRLNRPAESMAYFDKALA-D--- 106 (225)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-S---
T ss_pred ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-C---
Confidence 4446789999999999999999999999999873 33467889999999999 999999999999987 1
Q ss_pred cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 369 LGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 369 ~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
+..|....++..+|.++...|++++|+.+|+++++. .|....++..+|.++...|++++|+.++++++..
T Consensus 107 --~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 176 (225)
T 2vq2_A 107 --PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--------QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSR 176 (225)
T ss_dssp --TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred --cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345777889999999999999999999999999998 6667788999999999999999999999999876
Q ss_pred hhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 449 AHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 528 (546)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~ 528 (546)
.+. .....+..++.++...|++++|..+++.+...
T Consensus 177 ~~~---------------------------------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 177 VEV---------------------------------------------LQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HCS---------------------------------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCC---------------------------------------------CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 320 22344567788888999999999999988887
Q ss_pred hhhh
Q psy597 529 AHER 532 (546)
Q Consensus 529 ~~~~ 532 (546)
.|+.
T Consensus 212 ~p~~ 215 (225)
T 2vq2_A 212 FPYS 215 (225)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 6654
No 43
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.84 E-value=2.3e-19 Score=171.85 Aligned_cols=229 Identities=15% Similarity=0.143 Sum_probs=197.1
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChh
Q psy597 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPD 291 (546)
Q Consensus 212 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (546)
|.++.+++.+|.+|...|++++|+.+|+++++ +.
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~----------------------------------------------~~ 36 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACD----------------------------------------------LK 36 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------------------------------------TT
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH----------------------------------------------CC
Confidence 56778999999999999999999999999987 12
Q ss_pred HHHHHHHHHHHHHH----hhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q psy597 292 VATMLNILALVYRD----QNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGK----RGKYKEAEPLCKRALE 363 (546)
Q Consensus 292 ~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~ 363 (546)
.+.+++.+|.+|.. .+++++|+.+|+++++. . ...+++.+|.+|.. .+++++|+.+|+++++
T Consensus 37 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~------~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~ 106 (273)
T 1ouv_A 37 ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL------N----YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACD 106 (273)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------T----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC------C----CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHH
Confidence 24678999999999 99999999999999876 2 26789999999999 9999999999999987
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH----cCCH
Q psy597 364 IREKVLGKEHPDVAKQLNNLALLCQN----QSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK----QGKY 435 (546)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~----~g~~ 435 (546)
. ....++.++|.+|.. .+++++|+.+|+++++. . ...++.++|.+|.. .+++
T Consensus 107 ~----------~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--------~--~~~a~~~lg~~~~~~~~~~~~~ 166 (273)
T 1ouv_A 107 L----------KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL--------N--DGDGCTILGSLYDAGRGTPKDL 166 (273)
T ss_dssp T----------TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--------T--CHHHHHHHHHHHHHTSSSCCCH
T ss_pred c----------CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc--------C--cHHHHHHHHHHHHcCCCCCCCH
Confidence 5 146788999999999 99999999999999986 2 34678899999999 9999
Q ss_pred HHHHHHHHHHHHhhhhcccCcccCCChhhHHHHh----hchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q psy597 436 KEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQ----KNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK 511 (546)
Q Consensus 436 ~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~ 511 (546)
++|+.+|++++.... ......++.++.. .+++++|..+|+++++. .+ ..++..+|.+|..
T Consensus 167 ~~A~~~~~~a~~~~~------~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--------~~--~~a~~~l~~~~~~ 230 (273)
T 1ouv_A 167 KKALASYDKACDLKD------SPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--------EN--GGGCFNLGAMQYN 230 (273)
T ss_dssp HHHHHHHHHHHHTTC------HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--------TC--HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCC------HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC--------CC--HHHHHHHHHHHHc
Confidence 999999999997621 2334556777888 89999999999999875 22 5688999999999
Q ss_pred ----cCCHHHHHHHHHHHHHHhhhh
Q psy597 512 ----QGKYKEAEILYKQVLTRAHER 532 (546)
Q Consensus 512 ----~g~~~~A~~~~~~al~~~~~~ 532 (546)
.+++++|+.+|+++++..|..
T Consensus 231 g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 231 GEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp TSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred CCCcccCHHHHHHHHHHHHHcCCHH
Confidence 999999999999999988765
No 44
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.84 E-value=1.7e-18 Score=180.90 Aligned_cols=359 Identities=14% Similarity=0.099 Sum_probs=249.2
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCcCCCCCCCCChh
Q psy597 120 ELANTQQKLQSSEQANSQLEEEKKHLEFMSSIRKYDSDIQGDENSGDQKSDKHKQDDPVVDLFPDEDNDDRNNLSPTPPS 199 (546)
Q Consensus 120 ~la~~~~~l~~~~~~~~qlee~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 199 (546)
+.+.....++......+++++++..++-+..+. ++ .. ....+...+-. ......
T Consensus 4 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~----~~----------~~~~la~~~~~---------~g~~~~ 57 (514)
T 2gw1_A 4 KYALALKDKGNQFFRNKKYDDAIKYYNWALELK---ED----PV----------FYSNLSACYVS---------VGDLKK 57 (514)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC---CC----HH----------HHHHHHHHHHH---------HTCHHH
T ss_pred hhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC---cc----HH----------HHHhHHHHHHH---------HhhHHH
Confidence 345556667777777788888877665554443 11 00 00001111000 011233
Q ss_pred hHHHhhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHH--hhhhhhHH------
Q psy597 200 QFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCAL--RSRKESYD------ 271 (546)
Q Consensus 200 ~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l--~~~~~~~~------ 271 (546)
+...+.......|..+.++..+|.+|...|++++|+..|++++...+................. ........
T Consensus 58 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 137 (514)
T 2gw1_A 58 VVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTAT 137 (514)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC--------
T ss_pred HHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444557777889999999999999999999999888764422221111111110000 00000000
Q ss_pred -----------------------HHHHHHHHHHhccC----CCCChhHHHHHHHHHHHHHH---hhcHHHHHHHHHHHHH
Q psy597 272 -----------------------IVKQAKVAQILGSG----GHDHPDVATMLNILALVYRD---QNKYKEAANLLNDALT 321 (546)
Q Consensus 272 -----------------------~~~~~~~~~~l~~~----~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~ 321 (546)
..........+... .-..|....++..+|.++.. .|++++|+.+|++++.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 217 (514)
T 2gw1_A 138 ATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAAR 217 (514)
T ss_dssp -------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHH
T ss_pred HhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHH
Confidence 00000000000000 00124558888999998887 8999999999999999
Q ss_pred HHHHhc--CCCC----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHH
Q psy597 322 IREKTL--GENH----AAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEE 395 (546)
Q Consensus 322 ~~~~~~--g~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~e 395 (546)
.++... .+++ |....++..+|.++...|++++|+.+|++++... |. ..++..+|.++...|++++
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--------~~-~~~~~~l~~~~~~~~~~~~ 288 (514)
T 2gw1_A 218 LFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--------PR-VNSYIYMALIMADRNDSTE 288 (514)
T ss_dssp HHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--------CC-HHHHHHHHHHHHTSSCCTT
T ss_pred HhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--------cc-HHHHHHHHHHHHHCCCHHH
Confidence 654443 2222 6778999999999999999999999999999883 55 8899999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhH
Q psy597 396 VERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKN 475 (546)
Q Consensus 396 A~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (546)
|+.+|++++.. .|....++..+|.+|...|++++|+.+|++++...+... ......+..+...|+++.
T Consensus 289 A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~ 356 (514)
T 2gw1_A 289 YYNYFDKALKL--------DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENI----FPYIQLACLAYRENKFDD 356 (514)
T ss_dssp GGGHHHHHHTT--------CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCS----HHHHHHHHHTTTTTCHHH
T ss_pred HHHHHHHHhhc--------CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhH----HHHHHHHHHHHHcCCHHH
Confidence 99999999987 666777899999999999999999999999998755432 334456666888999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhc
Q psy597 476 REKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHERE 533 (546)
Q Consensus 476 A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~~~ 533 (546)
|...+.+++.. .|....++..+|.+|...|++++|+.+|++++...|..+
T Consensus 357 A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 406 (514)
T 2gw1_A 357 CETLFSEAKRK--------FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLD 406 (514)
T ss_dssp HHHHHHHHHHH--------STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHH--------cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 99999999977 566677899999999999999999999999999887653
No 45
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.84 E-value=1.4e-19 Score=162.29 Aligned_cols=172 Identities=16% Similarity=0.218 Sum_probs=157.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhH
Q psy597 213 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDV 292 (546)
Q Consensus 213 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 292 (546)
+++.+|+.+|.+|...|+|++|+..|+++++. +|..
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--------------------------------------------~p~~ 38 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--------------------------------------------DPNN 38 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------------------------------------------CTTC
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------------------------------------CCCC
Confidence 34678999999999999999999999999984 4666
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q psy597 293 ATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKE 372 (546)
Q Consensus 293 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 372 (546)
+.++..+|.+|...|++++|+..+.+++.. .|....++..+|.++...++++.|...+.+++.+
T Consensus 39 ~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~-------- 102 (184)
T 3vtx_A 39 VETLLKLGKTYMDIGLPNDAIESLKKFVVL--------DTTSAEAYYILGSANFMIDEKQAAIDALQRAIAL-------- 102 (184)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Confidence 788999999999999999999999999987 3444778899999999999999999999999988
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhc
Q psy597 373 HPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 452 (546)
Q Consensus 373 ~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~ 452 (546)
.|....++..+|.++...|++++|+.+|++++++ +|..+.++.++|.+|..+|++++|+.+|++++++.|++
T Consensus 103 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 103 NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI--------KPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHH
T ss_pred CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh--------cchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccC
Confidence 3777889999999999999999999999999999 88889999999999999999999999999999987653
No 46
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.83 E-value=1.6e-18 Score=173.84 Aligned_cols=272 Identities=12% Similarity=0.076 Sum_probs=215.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhH
Q psy597 213 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDV 292 (546)
Q Consensus 213 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 292 (546)
....++..+|.++...|++++|+.++++++...+ ..+....
T Consensus 12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~---------------------------------------~~~~~~~ 52 (373)
T 1hz4_A 12 MHAEFNALRAQVAINDGNPDEAERLAKLALEELP---------------------------------------PGWFYSR 52 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC---------------------------------------TTCHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC---------------------------------------CCchhHH
Confidence 4467788899999999999999999999988532 1122335
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q psy597 293 ATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKE 372 (546)
Q Consensus 293 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 372 (546)
..++..+|.++...|++++|..++.+++.+.+.. ++......++.++|.++...|++++|+.++++++.+.....+..
T Consensus 53 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~ 130 (373)
T 1hz4_A 53 IVATSVLGEVLHCKGELTRSLALMQQTEQMARQH--DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQ 130 (373)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccc
Confidence 6688999999999999999999999999998876 55556677899999999999999999999999999998775555
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhc
Q psy597 373 HPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 452 (546)
Q Consensus 373 ~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~ 452 (546)
+|....++.++|.++...|++++|+.++++++.+.... .++....++.++|.++...|++++|..++++++.+.+..
T Consensus 131 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~ 207 (373)
T 1hz4_A 131 LPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY---QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG 207 (373)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS---CGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS
T ss_pred CcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc---CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc
Confidence 57888999999999999999999999999999985443 122356789999999999999999999999999876543
Q ss_pred ccCcc-cCCC--hhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q psy597 453 EFGAC-DGDN--KPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRA 529 (546)
Q Consensus 453 ~~~~~-~~~~--~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~ 529 (546)
..... .... ..+..+...|+++.|...+.+++... ..........+..+|.++...|++++|...+++++...
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~ 283 (373)
T 1hz4_A 208 KYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPE----FANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENA 283 (373)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCC----CTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCC----CCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 22100 0000 12233667888888888888776431 11112223467889999999999999999999999987
Q ss_pred hhh
Q psy597 530 HER 532 (546)
Q Consensus 530 ~~~ 532 (546)
+..
T Consensus 284 ~~~ 286 (373)
T 1hz4_A 284 RSL 286 (373)
T ss_dssp HHT
T ss_pred HhC
Confidence 653
No 47
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.83 E-value=3.3e-19 Score=184.64 Aligned_cols=259 Identities=16% Similarity=0.101 Sum_probs=208.1
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCCh
Q psy597 211 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHP 290 (546)
Q Consensus 211 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 290 (546)
++..+..++.+|.++...|++++|+.+|++|+++.+...+ ...++
T Consensus 47 ~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~-----------------------------------~~~~~ 91 (472)
T 4g1t_A 47 REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHA-----------------------------------DQAEI 91 (472)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSG-----------------------------------GGCTT
T ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCc-----------------------------------cccch
Confidence 4455678899999999999999999999999998776542 22467
Q ss_pred hHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHh
Q psy597 291 DVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKR--GKYKEAEPLCKRALEIREKV 368 (546)
Q Consensus 291 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~ 368 (546)
..+.++.++|.+|..+|++++|+.+|++++.+.+...+..++..+.++.++|.++... ++|++|+.+|++++++.
T Consensus 92 ~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--- 168 (472)
T 4g1t_A 92 RSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--- 168 (472)
T ss_dssp TTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS---
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC---
Confidence 7788899999999999999999999999999999887666667788888888877765 47999999999999984
Q ss_pred cCCCChHHHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH----cCCHHHHHHH
Q psy597 369 LGKEHPDVAKQLNNLALLC---QNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK----QGKYKEAEIL 441 (546)
Q Consensus 369 ~~~~~~~~~~~~~~la~~~---~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~----~g~~~eA~~~ 441 (546)
|..+.++..+|.++ ...+++++|+..|++++++ +|....++.++|..+.. .|++++|..+
T Consensus 169 -----p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l--------~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~ 235 (472)
T 4g1t_A 169 -----PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL--------NPDNQYLKVLLALKLHKMREEGEEEGEGEKL 235 (472)
T ss_dssp -----TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH--------CSSCHHHHHHHHHHHHHCC------CHHHHH
T ss_pred -----CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc--------CCcchHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 56666777777664 4568889999999999998 77777778888876654 4678899999
Q ss_pred HHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHc---------
Q psy597 442 YKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ--------- 512 (546)
Q Consensus 442 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~--------- 512 (546)
|++++...+... ......+..+...|++..|...|.+++.. +|....++..+|.+|...
T Consensus 236 ~~~al~~~~~~~----~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~y~~~~~~~~~~~~ 303 (472)
T 4g1t_A 236 VEEALEKAPGVT----DVLRSAAKFYRRKDEPDKAIELLKKALEY--------IPNNAYLHCQIGCCYRAKVFQVMNLRE 303 (472)
T ss_dssp HHHHHHHCSSCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHhCccHH----HHHHHHHHHHHHcCchHHHHHHHHHHHHh--------CCChHHHHHHHHHHHHHHHHHhhhHHH
Confidence 999998755432 33456777899999999999999999988 788888999999998654
Q ss_pred ----------CCHHHHHHHHHHHHHHhhhh
Q psy597 513 ----------GKYKEAEILYKQVLTRAHER 532 (546)
Q Consensus 513 ----------g~~~~A~~~~~~al~~~~~~ 532 (546)
+.+++|+.+|++++...|..
T Consensus 304 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 333 (472)
T 4g1t_A 304 NGMYGKRKLLELIGHAVAHLKKADEANDNL 333 (472)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhhcCCch
Confidence 34677888888888876543
No 48
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.83 E-value=1.9e-19 Score=194.09 Aligned_cols=177 Identities=27% Similarity=0.341 Sum_probs=163.6
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
..|..+.+++++|.+|..+|++++|+.+|++++++ .|....+++++|.+|...|++++|+.+|++++++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--------~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--- 72 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--- 72 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence 56889999999999999999999999999999998 4556889999999999999999999999999998
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 368 VLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 447 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~ 447 (546)
.|..+.+++++|.++..+|++++|+.+|++++++ +|..+.+++++|.+|..+|++++|+..|+++++
T Consensus 73 -----~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l--------~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~ 139 (723)
T 4gyw_A 73 -----SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI--------NPAFADAHSNLASIHKDSGNIPEAIASYRTALK 139 (723)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4888999999999999999999999999999999 888999999999999999999999999999998
Q ss_pred hhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 448 RAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 527 (546)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~ 527 (546)
+ .|....++.++|.+|..+|++++|.+.++++++
T Consensus 140 l----------------------------------------------~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 140 L----------------------------------------------KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp H----------------------------------------------CSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred h----------------------------------------------CCCChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 6 566678899999999999999999999999999
Q ss_pred Hhhhhcc
Q psy597 528 RAHEREF 534 (546)
Q Consensus 528 ~~~~~~~ 534 (546)
+.++..-
T Consensus 174 l~~~~~~ 180 (723)
T 4gyw_A 174 IVADQLE 180 (723)
T ss_dssp HHHHHHH
T ss_pred hChhHHh
Confidence 9887643
No 49
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.82 E-value=2.7e-18 Score=172.74 Aligned_cols=301 Identities=12% Similarity=0.004 Sum_probs=219.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHH-------hhhhhhH------HHHHHHHHHH
Q psy597 214 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCAL-------RSRKESY------DIVKQAKVAQ 280 (546)
Q Consensus 214 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l-------~~~~~~~------~~~~~~~~~~ 280 (546)
.+....+--..+...+++++|..+++++.........+.... .++.... ....... ..........
T Consensus 11 ~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~-~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~ 89 (378)
T 3q15_A 11 RVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLL-IYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIE 89 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHH-HHHHHHHHHHHHHHHTCCC--------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHH-HHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHh
Confidence 344444444455899999999999999877665554332222 1111111 1111111 0001111111
Q ss_pred HhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy597 281 ILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKR 360 (546)
Q Consensus 281 ~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 360 (546)
.... ..++......++.+|..+...|++++|+.+|++++.+.+.. ++.+..+.++.++|.+|...|+++.|+.++.+
T Consensus 90 ~~~~-~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 90 TPQK-KLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFV--SDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp GGGH-HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccCC-CCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhC--CChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 0000 00122233467889999999999999999999999988776 66788899999999999999999999999999
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHH
Q psy597 361 ALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEI 440 (546)
Q Consensus 361 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~ 440 (546)
++++.++..+ ..+..+.++.++|.+|...|++++|+.+|++++++.+.. ++.+..+.++.++|.+|..+|++++|+.
T Consensus 167 al~~~~~~~~-~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y~~~~~~~~A~~ 243 (378)
T 3q15_A 167 ALDIYQNHPL-YSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI--QNDRFIAISLLNIANSYDRSGDDQMAVE 243 (378)
T ss_dssp HHHHHHTSTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHhCCC-chhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999876411 134678899999999999999999999999999998776 4566788899999999999999999999
Q ss_pred HHHHHHHhhhhcc-cCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCC---HH
Q psy597 441 LYKQVLTRAHERE-FGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGK---YK 516 (546)
Q Consensus 441 ~~~~al~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~---~~ 516 (546)
+|++++.+..... ..........+.++...|+++.|..++++++.+..... ++.....+..++.+|...|+ +.
T Consensus 244 ~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~l~~ly~~~~~~~~~~ 320 (378)
T 3q15_A 244 HFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARS---HKFYKELFLFLQAVYKETVDERKIH 320 (378)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTC---CSCHHHHHHHHHHHHSSSCCHHHHH
T ss_pred HHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHhCCCcHHHHH
Confidence 9999999766422 11134556677779999999999999999998854432 34444567889999999999 77
Q ss_pred HHHHHHHH
Q psy597 517 EAEILYKQ 524 (546)
Q Consensus 517 ~A~~~~~~ 524 (546)
+|+.++++
T Consensus 321 ~al~~~~~ 328 (378)
T 3q15_A 321 DLLSYFEK 328 (378)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77776665
No 50
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.82 E-value=2.1e-19 Score=193.67 Aligned_cols=174 Identities=25% Similarity=0.330 Sum_probs=162.8
Q ss_pred CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCC
Q psy597 210 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDH 289 (546)
Q Consensus 210 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 289 (546)
..|+++.+++++|.+|..+|++++|+.+|++++++ .
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--------------------------------------------~ 39 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--------------------------------------------F 39 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------------------------C
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------------------------------------C
Confidence 35899999999999999999999999999999984 4
Q ss_pred hhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q psy597 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 369 (546)
Q Consensus 290 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 369 (546)
|..+.+++++|.+|...|++++|+.+|++++++ .|..+.+++++|.+|..+|++++|+.+|++++++
T Consensus 40 P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--------~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l----- 106 (723)
T 4gyw_A 40 PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--------SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI----- 106 (723)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Confidence 667789999999999999999999999999998 4566889999999999999999999999999998
Q ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q psy597 370 GKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRA 449 (546)
Q Consensus 370 ~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~ 449 (546)
+|....+++++|.+|..+|++++|+.+|++|+++ +|....++.++|.+|..+|++++|.+.|++++++.
T Consensus 107 ---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--------~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~ 175 (723)
T 4gyw_A 107 ---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKL--------KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIV 175 (723)
T ss_dssp ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred ---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhC
Confidence 4888999999999999999999999999999999 88889999999999999999999999999999987
Q ss_pred hh
Q psy597 450 HE 451 (546)
Q Consensus 450 ~~ 451 (546)
++
T Consensus 176 ~~ 177 (723)
T 4gyw_A 176 AD 177 (723)
T ss_dssp HH
T ss_pred hh
Confidence 75
No 51
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.82 E-value=2.3e-19 Score=165.69 Aligned_cols=171 Identities=20% Similarity=0.159 Sum_probs=156.5
Q ss_pred hHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q psy597 291 DVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 370 (546)
Q Consensus 291 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 370 (546)
..+.+++.+|.++...|++++|+..|++++.. .|....++..+|.++...|++++|+..|++++++
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~------ 68 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKE--------NPQDPEALYWLARTQLKLGLVNPALENGKTLVAR------ 68 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Confidence 34567899999999999999999999999976 5666889999999999999999999999999998
Q ss_pred CCChHHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHH
Q psy597 371 KEHPDVAKQLNNLALLCQNQ-----------SKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAE 439 (546)
Q Consensus 371 ~~~~~~~~~~~~la~~~~~~-----------g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~ 439 (546)
.|....++.++|.++... |++++|+..|++++++ +|....++.++|.+|..+|++++|+
T Consensus 69 --~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~A~ 138 (217)
T 2pl2_A 69 --TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--------NPRYAPLHLQRGLVYALLGERDKAE 138 (217)
T ss_dssp --CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred --CCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChHHHH
Confidence 488889999999999999 9999999999999999 8888899999999999999999999
Q ss_pred HHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHH
Q psy597 440 ILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAE 519 (546)
Q Consensus 440 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~ 519 (546)
..|++++.+ . ....++.++|.+|...|++++|+
T Consensus 139 ~~~~~al~~----------------------------------------------~-~~~~~~~~la~~~~~~g~~~~A~ 171 (217)
T 2pl2_A 139 ASLKQALAL----------------------------------------------E-DTPEIRSALAELYLSMGRLDEAL 171 (217)
T ss_dssp HHHHHHHHH----------------------------------------------C-CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHhc----------------------------------------------c-cchHHHHHHHHHHHHcCCHHHHH
Confidence 999999986 2 34567889999999999999999
Q ss_pred HHHHHHHHHhhhh
Q psy597 520 ILYKQVLTRAHER 532 (546)
Q Consensus 520 ~~~~~al~~~~~~ 532 (546)
..|++++++.|+.
T Consensus 172 ~~~~~al~~~P~~ 184 (217)
T 2pl2_A 172 AQYAKALEQAPKD 184 (217)
T ss_dssp HHHHHHHHHSTTC
T ss_pred HHHHHHHHhCCCC
Confidence 9999999988765
No 52
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.82 E-value=2e-19 Score=184.91 Aligned_cols=304 Identities=15% Similarity=0.156 Sum_probs=219.0
Q ss_pred hHHHhhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-------------cCchhHHHhhHHHHHhhh
Q psy597 200 QFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKT-------------SGKYEAAETLEDCALRSR 266 (546)
Q Consensus 200 ~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-------------~~~~~~a~~~~~~~l~~~ 266 (546)
++..+.......|..+.+++.+|.+|...|++++|+..|+++++..+.. .+.++.|...+..++...
T Consensus 45 A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 124 (450)
T 2y4t_A 45 ALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN 124 (450)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3333444444466678888888888888899999998888888763322 256666766666665433
Q ss_pred hhhH---HHHHH-----------------------HHHHHHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q psy597 267 KESY---DIVKQ-----------------------AKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDAL 320 (546)
Q Consensus 267 ~~~~---~~~~~-----------------------~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 320 (546)
+... ..... ..+...+.......|....++..+|.+|...|++++|+.+|++++
T Consensus 125 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 204 (450)
T 2y4t_A 125 PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAAS 204 (450)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHH
T ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3222 11100 001111111111245567789999999999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH---------HHHHHHHHHcC
Q psy597 321 TIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQL---------NNLALLCQNQS 391 (546)
Q Consensus 321 ~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~---------~~la~~~~~~g 391 (546)
... |....++..+|.+|...|++++|+.+|++++... ++++.....+ ..+|.++...|
T Consensus 205 ~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 271 (450)
T 2y4t_A 205 KLK--------NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-----QDHKRCFAHYKQVKKLNKLIESAEELIRDG 271 (450)
T ss_dssp HHH--------CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CChHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 884 3336789999999999999999999999999773 2233322222 33499999999
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhh
Q psy597 392 KYEEVERYYQRALEIYELKLGPDDSN-VAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQK 470 (546)
Q Consensus 392 ~~~eA~~~~~~al~~~~~~~~~~~~~-~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 470 (546)
++++|+.+|++++.+. ++++. ...++..+|.++...|++++|+.++++++...+... ......+.++...
T Consensus 272 ~~~~A~~~~~~~l~~~-----p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~----~~~~~l~~~~~~~ 342 (450)
T 2y4t_A 272 RYTDATSKYESVMKTE-----PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNV----NALKDRAEAYLIE 342 (450)
T ss_dssp CHHHHHHHHHHHHHHC-----CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhcC-----CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH----HHHHHHHHHHHHh
Confidence 9999999999999871 22222 356899999999999999999999999998755432 3455677778999
Q ss_pred chhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH------------HHHcC-----CHHHHHHHHHH-HHHHhhhh
Q psy597 471 NKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASC------------YLKQG-----KYKEAEILYKQ-VLTRAHER 532 (546)
Q Consensus 471 ~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~------------y~~~g-----~~~~A~~~~~~-al~~~~~~ 532 (546)
|++++|...|++++.+ .|....++..++.+ |...| +.+++...|++ +++..|+.
T Consensus 343 ~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~ 414 (450)
T 2y4t_A 343 EMYDEAIQDYETAQEH--------NENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDN 414 (450)
T ss_dssp TCHHHHHHHHHHHHTT--------SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGG
T ss_pred cCHHHHHHHHHHHHHh--------CcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCC
Confidence 9999999999999976 56667778888844 44455 56777888886 77766655
Q ss_pred c
Q psy597 533 E 533 (546)
Q Consensus 533 ~ 533 (546)
.
T Consensus 415 ~ 415 (450)
T 2y4t_A 415 F 415 (450)
T ss_dssp C
T ss_pred C
Confidence 3
No 53
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.81 E-value=1.4e-19 Score=172.82 Aligned_cols=234 Identities=15% Similarity=0.095 Sum_probs=186.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHH
Q psy597 224 QYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVY 303 (546)
Q Consensus 224 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~ 303 (546)
.+...|++++|+..|+++++.. ...+|..+.+++.+|.++
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~----------------------------------------~~~~~~~~~~~~~l~~~~ 53 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASR----------------------------------------ALTDDERAQLLYERGVLY 53 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSS----------------------------------------CCCHHHHHHHHHHHHHHH
T ss_pred ccCccchHHHHHHHHHHHHhcc----------------------------------------cccCchhHHHHHHHHHHH
Confidence 3445688999999999988731 123577899999999999
Q ss_pred HHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q psy597 304 RDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNL 383 (546)
Q Consensus 304 ~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 383 (546)
...|++++|+.+|++++.. .|....++..+|.++...|++++|+.+|++++... |....++..+
T Consensus 54 ~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~l 117 (275)
T 1xnf_A 54 DSLGLRALARNDFSQALAI--------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--------PTYNYAHLNR 117 (275)
T ss_dssp HHTTCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCTHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--------ccccHHHHHH
Confidence 9999999999999999988 34446789999999999999999999999999983 6667899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChh
Q psy597 384 ALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKP 463 (546)
Q Consensus 384 a~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~ 463 (546)
|.++...|++++|+.+|++++++ .|........++ ++...|++++|+..+.+++...+... .....
T Consensus 118 a~~~~~~g~~~~A~~~~~~a~~~--------~~~~~~~~~~~~-~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~ 183 (275)
T 1xnf_A 118 GIALYYGGRDKLAQDDLLAFYQD--------DPNDPFRSLWLY-LAEQKLDEKQAKEVLKQHFEKSDKEQ-----WGWNI 183 (275)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH-HHHHHHCHHHHHHHHHHHHHHSCCCS-----THHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh--------CCCChHHHHHHH-HHHHhcCHHHHHHHHHHHHhcCCcch-----HHHHH
Confidence 99999999999999999999998 444444444444 44677999999999999998755431 11223
Q ss_pred hHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q psy597 464 IWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 531 (546)
Q Consensus 464 ~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~ 531 (546)
+..+...++...|...+.+++...... .+....++..+|.+|...|++++|+.+|++++...|.
T Consensus 184 ~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 247 (275)
T 1xnf_A 184 VEFYLGNISEQTLMERLKADATDNTSL----AEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH 247 (275)
T ss_dssp HHHHTTSSCHHHHHHHHHHHCCSHHHH----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHhcCHHHHHHHHHHHhcccccc----cccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch
Confidence 334556666777777777776543221 2345789999999999999999999999999987654
No 54
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.81 E-value=2.3e-18 Score=167.95 Aligned_cols=249 Identities=12% Similarity=0.083 Sum_probs=188.8
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHh
Q psy597 227 SQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQ 306 (546)
Q Consensus 227 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~ 306 (546)
..|++++|..+++++.+..+... ....++.......+...|.+|...
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~---------------------------------~~~~~~~~~A~~~~~~a~~~~~~~ 49 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSF---------------------------------MKWKPDYDSAASEYAKAAVAFKNA 49 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCS---------------------------------SSCSCCHHHHHHHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHHHHHHccccc---------------------------------cCCCCCHHHHHHHHHHHHHHHHHc
Confidence 45788999999999887654211 000234455566777888999999
Q ss_pred hcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q psy597 307 NKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALL 386 (546)
Q Consensus 307 g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 386 (546)
|++++|+.+|.+++.+.+.. ++....+.++.++|.+|...|++++|+.+|++++++.... ++....+.++.++|.+
T Consensus 50 g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~--g~~~~~a~~~~~lg~~ 125 (307)
T 2ifu_A 50 KQLEQAKDAYLQEAEAHANN--RSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVEN--GTPDTAAMALDRAGKL 125 (307)
T ss_dssp TCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHH
Confidence 99999999999999999887 6667778899999999999999999999999999998654 3344568899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCc--ccCCChhh
Q psy597 387 CQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGA--CDGDNKPI 464 (546)
Q Consensus 387 ~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~--~~~~~~~~ 464 (546)
|.. |++++|+.+|+++++++... ++......++.++|.+|..+|++++|+.+|++++.+.+...... .......+
T Consensus 126 ~~~-g~~~~A~~~~~~Al~~~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g 202 (307)
T 2ifu_A 126 MEP-LDLSKAVHLYQQAAAVFENE--ERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQV 202 (307)
T ss_dssp HTT-TCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHc-CCHHHHHHHHHHHHHHHHhC--CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 999 99999999999999998764 33445678999999999999999999999999999877643211 11233344
Q ss_pred HHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Q psy597 465 WQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEI 520 (546)
Q Consensus 465 ~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~ 520 (546)
.++...|++..|..+|++++ +.. .. ........+..++..+ ..|+.+.+..
T Consensus 203 ~~~~~~g~~~~A~~~~~~al-~~p-~~--~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 203 LVQLHRADYVAAQKCVRESY-SIP-GF--SGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHT-TST-TS--TTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHh-CCC-CC--CCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 45666788888888888887 411 00 0123344566666665 5677665544
No 55
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.81 E-value=1.8e-19 Score=186.76 Aligned_cols=205 Identities=15% Similarity=0.062 Sum_probs=182.2
Q ss_pred hhcCCCchHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhc
Q psy597 205 VNAGYEIPARLRTLHNLVIQYASQGRY-EVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILG 283 (546)
Q Consensus 205 ~~~~~~~p~~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 283 (546)
.......|..+.+++.+|.++...|+| ++|+.+|+++++.
T Consensus 92 ~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--------------------------------------- 132 (474)
T 4abn_A 92 EEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--------------------------------------- 132 (474)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH---------------------------------------
T ss_pred HHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh---------------------------------------
Confidence 334455677889999999999999999 9999999999984
Q ss_pred cCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc---------CCHHHH
Q psy597 284 SGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKR---------GKYKEA 354 (546)
Q Consensus 284 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~---------g~~~~A 354 (546)
.|..+.+++.+|.+|...|++++|+.+|++++.+ .|. ..++.++|.++... |++++|
T Consensus 133 -----~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A 198 (474)
T 4abn_A 133 -----EPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--------CKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDS 198 (474)
T ss_dssp -----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--------CCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHH
T ss_pred -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCC-HHHHHHHHHHHHHhccCChhhhhhhHHHH
Confidence 4556788999999999999999999999999987 233 48899999999999 999999
Q ss_pred HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHHHhcCCCCh---HHHHHHH
Q psy597 355 EPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQ--------SKYEEVERYYQRALEIYELKLGPDDS---NVAKTKN 423 (546)
Q Consensus 355 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--------g~~~eA~~~~~~al~~~~~~~~~~~~---~~~~~~~ 423 (546)
+.+|++++++ .|....++.++|.+|... |++++|+.+|++++++ +| ..+.+++
T Consensus 199 ~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~ 262 (474)
T 4abn_A 199 VRQAKLAVQM--------DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV--------DRKASSNPDLHL 262 (474)
T ss_dssp HHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH--------CGGGGGCHHHHH
T ss_pred HHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh--------CCCcccCHHHHH
Confidence 9999999998 477888999999999999 9999999999999999 77 8899999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Q psy597 424 NLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKN 503 (546)
Q Consensus 424 ~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~ 503 (546)
++|.+|...|++++|+..|++++.+ .|....++.
T Consensus 263 ~lg~~~~~~g~~~~A~~~~~~al~l----------------------------------------------~p~~~~a~~ 296 (474)
T 4abn_A 263 NRATLHKYEESYGEALEGFSQAAAL----------------------------------------------DPAWPEPQQ 296 (474)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH----------------------------------------------CTTCHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh----------------------------------------------CCCCHHHHH
Confidence 9999999999999999999999986 455567788
Q ss_pred HHHHHHHHcCCHHHHHHHHHH
Q psy597 504 NLASCYLKQGKYKEAEILYKQ 524 (546)
Q Consensus 504 ~La~~y~~~g~~~~A~~~~~~ 524 (546)
.++.++...|++++|+..+.+
T Consensus 297 ~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 297 REQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 888888888988888876544
No 56
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.80 E-value=1.8e-17 Score=161.72 Aligned_cols=194 Identities=14% Similarity=0.137 Sum_probs=168.3
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChh
Q psy597 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPD 291 (546)
Q Consensus 212 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (546)
+.-...+...|.+|...|+|++|+..|.+++++.+..+ +...
T Consensus 33 ~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~--------------------------------------~~~~ 74 (307)
T 2ifu_A 33 DSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNR--------------------------------------SLFH 74 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--------------------------------------CHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC--------------------------------------CHHH
Confidence 44556777788999999999999999999999877654 5567
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 371 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 371 (546)
.+.++..+|.+|...|++++|+.+|++++.++... ++....+.++.++|.+|.. |++++|+.+|++++.+.+.. +
T Consensus 75 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~--g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~--~ 149 (307)
T 2ifu_A 75 AAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVEN--GTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE--E 149 (307)
T ss_dssp HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT--T
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC--C
Confidence 78899999999999999999999999999998775 5556678899999999999 99999999999999998664 3
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 372 EHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 372 ~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
+......++.++|.+|..+|++++|+.+|++++.+.... +..+....++.++|.++..+|++++|+.+|++++ ..|.
T Consensus 150 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~ 226 (307)
T 2ifu_A 150 RLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM--ENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPG 226 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTT
T ss_pred ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCC
Confidence 334567899999999999999999999999999997765 2244556789999999999999999999999999 7554
No 57
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.80 E-value=4e-18 Score=164.75 Aligned_cols=249 Identities=14% Similarity=0.087 Sum_probs=182.0
Q ss_pred hHHHhhhcCCCchHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHH
Q psy597 200 QFAQQVNAGYEIPAR-LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKV 278 (546)
Q Consensus 200 ~~~~~~~~~~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~ 278 (546)
++..........|.. ......++.+|...|+++.|+..++.
T Consensus 18 ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~-------------------------------------- 59 (291)
T 3mkr_A 18 CINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP-------------------------------------- 59 (291)
T ss_dssp HHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT--------------------------------------
T ss_pred HHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc--------------------------------------
Confidence 344444444555655 45777788889999998888875532
Q ss_pred HHHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q psy597 279 AQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLC 358 (546)
Q Consensus 279 ~~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 358 (546)
..+....++..++..+...|++++|+..+++++.. ...|....++..+|.++...|++++|+.+|
T Consensus 60 ---------~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~------~~~P~~~~~~~~la~~~~~~g~~~~Al~~l 124 (291)
T 3mkr_A 60 ---------SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSR------SVDVTNTTFLLMAASIYFYDQNPDAALRTL 124 (291)
T ss_dssp ---------TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHS------CCCCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ---------cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc------ccCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 12335677788888888888888888888887753 113444667888888888889998888888
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH--HHHHHcCCHH
Q psy597 359 KRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLA--SCYLKQGKYK 436 (546)
Q Consensus 359 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La--~~y~~~g~~~ 436 (546)
++ |....++..+|.++..+|++++|+..|+++++. +|.........+ .++...|+++
T Consensus 125 ~~-------------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--------~p~~~~~~l~~a~~~l~~~~~~~~ 183 (291)
T 3mkr_A 125 HQ-------------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--------DEDATLTQLATAWVSLAAGGEKLQ 183 (291)
T ss_dssp TT-------------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHCTTHHH
T ss_pred hC-------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--------CcCcHHHHHHHHHHHHHhCchHHH
Confidence 76 233457788888888889999999888888887 333322222222 2333458888
Q ss_pred HHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHH
Q psy597 437 EAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYK 516 (546)
Q Consensus 437 eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~ 516 (546)
+|+..|++++...|.+ .......+.++...|++++|...|++++.. +|..+.++.++|.++...|++.
T Consensus 184 eA~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~eA~~~l~~al~~--------~p~~~~~l~~l~~~~~~~g~~~ 251 (291)
T 3mkr_A 184 DAYYIFQEMADKCSPT----LLLLNGQAACHMAQGRWEAAEGVLQEALDK--------DSGHPETLINLVVLSQHLGKPP 251 (291)
T ss_dssp HHHHHHHHHHHHSCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCCH
Confidence 8998888888875432 234555667788888888888888888887 7888889999999999999997
Q ss_pred H-HHHHHHHHHHHhhhhcc
Q psy597 517 E-AEILYKQVLTRAHEREF 534 (546)
Q Consensus 517 ~-A~~~~~~al~~~~~~~~ 534 (546)
+ +..++++++++.|+.++
T Consensus 252 eaa~~~~~~~~~~~P~~~~ 270 (291)
T 3mkr_A 252 EVTNRYLSQLKDAHRSHPF 270 (291)
T ss_dssp HHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHhCCCChH
Confidence 6 57899999999887654
No 58
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.80 E-value=2.3e-18 Score=163.67 Aligned_cols=184 Identities=20% Similarity=0.247 Sum_probs=158.5
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCCh
Q psy597 211 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHP 290 (546)
Q Consensus 211 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 290 (546)
.|..+..++.+|..++..|+|++|+..|+++++. .+.++
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-----------------------------------------~p~~~ 49 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTY-----------------------------------------GRTHE 49 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG-----------------------------------------CSCST
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----------------------------------------CCCCc
Confidence 4566789999999999999999999999999884 34566
Q ss_pred hHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHH
Q psy597 291 DVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGK--------RGKYKEAEPLCKRAL 362 (546)
Q Consensus 291 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al 362 (546)
....+++.+|.+|...|++++|+..|++++... ++++....+++.+|.++.. .|++++|+..|++++
T Consensus 50 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l 124 (261)
T 3qky_A 50 WAADAQFYLARAYYQNKEYLLAASEYERFIQIY-----QIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFI 124 (261)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC-----CCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHH
Confidence 668999999999999999999999999999985 4566778899999999999 999999999999999
Q ss_pred HHHHHhcCCCChHHHHHH--------------HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q psy597 363 EIREKVLGKEHPDVAKQL--------------NNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASC 428 (546)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~--------------~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~ 428 (546)
... ++++....++ +.+|.+|...|++++|+..|+++++.. |+++....++..+|.+
T Consensus 125 ~~~-----p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~ 194 (261)
T 3qky_A 125 DRY-----PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAY-----PDTPWADDALVGAMRA 194 (261)
T ss_dssp HHC-----TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTSTTHHHHHHHHHHH
T ss_pred HHC-----cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHH
Confidence 985 4444445454 899999999999999999999999872 3445588899999999
Q ss_pred HHHc----------CCHHHHHHHHHHHHHhhh
Q psy597 429 YLKQ----------GKYKEAEILYKQVLTRAH 450 (546)
Q Consensus 429 y~~~----------g~~~eA~~~~~~al~~~~ 450 (546)
|..+ |++++|+..|++++...|
T Consensus 195 ~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 195 YIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 9987 788888888888887643
No 59
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.80 E-value=6.3e-19 Score=176.44 Aligned_cols=235 Identities=9% Similarity=-0.000 Sum_probs=193.4
Q ss_pred ChhhHHHhhhcCCCchHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHH
Q psy597 197 PPSQFAQQVNAGYEIPARLRTLHNLVIQYASQGR-YEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQ 275 (546)
Q Consensus 197 ~~~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~ 275 (546)
...++.........+|....+|+.+|.++...|+ +++|+.+|++++.+
T Consensus 113 ~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l------------------------------- 161 (382)
T 2h6f_A 113 SERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE------------------------------- 161 (382)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-------------------------------
T ss_pred hHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH-------------------------------
Confidence 4455555666667789999999999999999997 99999999999984
Q ss_pred HHHHHHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHH
Q psy597 276 AKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAE 355 (546)
Q Consensus 276 ~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~ 355 (546)
.|....+|+.+|.++...|++++|+..|++++.+ +|....+|+++|.++...|++++|+
T Consensus 162 -------------~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~l--------dP~~~~a~~~lg~~~~~~g~~~eAl 220 (382)
T 2h6f_A 162 -------------QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ--------DAKNYHAWQHRQWVIQEFKLWDNEL 220 (382)
T ss_dssp -------------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCTTHH
T ss_pred -------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CccCHHHHHHHHHHHHHcCChHHHH
Confidence 5667889999999999999999999999999998 4666889999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH-cCCHHHH-----HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q psy597 356 PLCKRALEIREKVLGKEHPDVAKQLNNLALLCQN-QSKYEEV-----ERYYQRALEIYELKLGPDDSNVAKTKNNLASCY 429 (546)
Q Consensus 356 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~eA-----~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y 429 (546)
.+|++++++ +|....+|+++|.++.. .|.+++| +.+|++++.+ +|....+++++|.++
T Consensus 221 ~~~~~al~l--------~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l--------~P~~~~a~~~l~~ll 284 (382)
T 2h6f_A 221 QYVDQLLKE--------DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--------VPHNESAWNYLKGIL 284 (382)
T ss_dssp HHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHH
T ss_pred HHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHH
Confidence 999999999 48889999999999999 5665888 5999999999 888899999999999
Q ss_pred HHcC--CHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhc---------hhhHHHHHHHHH-HHHHHHHcCCCCHH
Q psy597 430 LKQG--KYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKN---------KAKNREKYYQRA-LEIYELKLGPDDSN 497 (546)
Q Consensus 430 ~~~g--~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~A~~~~~~A-l~~~~~~~~~~~~~ 497 (546)
...| ++++|+..+.++ ...+ ........++.++...+ ..++|+..|.++ +++ +|.
T Consensus 285 ~~~g~~~~~~a~~~~~~~-~~~p----~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~--------DP~ 351 (382)
T 2h6f_A 285 QDRGLSKYPNLLNQLLDL-QPSH----SSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEK--------DTI 351 (382)
T ss_dssp TTTCGGGCHHHHHHHHHH-TTTC----CCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTT--------CGG
T ss_pred HccCccchHHHHHHHHHh-ccCC----CCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHh--------Cch
Confidence 9988 699999988776 3322 11223344555565553 235566666665 444 788
Q ss_pred HHHHHHHHHHHHHHc
Q psy597 498 VAKTKNNLASCYLKQ 512 (546)
Q Consensus 498 ~~~~~~~La~~y~~~ 512 (546)
....|..++..+..+
T Consensus 352 r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 352 RKEYWRYIGRSLQSK 366 (382)
T ss_dssp GHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 888999888887654
No 60
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.80 E-value=2.7e-19 Score=170.74 Aligned_cols=242 Identities=9% Similarity=0.065 Sum_probs=194.5
Q ss_pred hhHHHhhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHH
Q psy597 199 SQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKV 278 (546)
Q Consensus 199 ~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~ 278 (546)
.++..+.......|..+.++..+|.+|...|++++|+..|+++++.
T Consensus 21 ~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---------------------------------- 66 (272)
T 3u4t_A 21 EAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK---------------------------------- 66 (272)
T ss_dssp HHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT----------------------------------
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----------------------------------
Confidence 3444444444556667778999999999999999999999999872
Q ss_pred HHHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q psy597 279 AQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLC 358 (546)
Q Consensus 279 ~~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 358 (546)
..+....+.++..+|.++...|++++|+.+|++++... |....++..+|.+|...|++++|+.+|
T Consensus 67 -------~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~ 131 (272)
T 3u4t_A 67 -------VNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD--------TTRLDMYGQIGSYFYNKGNFPLAIQYM 131 (272)
T ss_dssp -------SCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -------cCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--------cccHHHHHHHHHHHHHccCHHHHHHHH
Confidence 22334457789999999999999999999999999973 444678999999999999999999999
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCC---H
Q psy597 359 KRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGK---Y 435 (546)
Q Consensus 359 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~---~ 435 (546)
+++++. .|....++.++|...+..+++++|+.+|++++++ .|....++..+|.++...|+ +
T Consensus 132 ~~al~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~~~~~~~~~~~~~~~ 195 (272)
T 3u4t_A 132 EKQIRP--------TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--------KPNIYIGYLWRARANAAQDPDTKQ 195 (272)
T ss_dssp GGGCCS--------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHSTTCSS
T ss_pred HHHhhc--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHcCcchhh
Confidence 999987 3777889999995555567999999999999998 77778899999999999999 9
Q ss_pred HHHHHHHHHHHHhhhhcccC----cccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q psy597 436 KEAEILYKQVLTRAHEREFG----ACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK 511 (546)
Q Consensus 436 ~eA~~~~~~al~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~ 511 (546)
++|+..|++++......+.. .......++..+...|+++.|..+|++++.+ .|....++..++.+...
T Consensus 196 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~a~~~l~~~~~~ 267 (272)
T 3u4t_A 196 GLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL--------DPTNKKAIDGLKMKLEH 267 (272)
T ss_dssp CTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CccHHHHHHHhhhhhcc
Confidence 99999999999987443321 1123445667788899999999999999988 67777787777776654
Q ss_pred cC
Q psy597 512 QG 513 (546)
Q Consensus 512 ~g 513 (546)
.+
T Consensus 268 ~~ 269 (272)
T 3u4t_A 268 HH 269 (272)
T ss_dssp --
T ss_pred cc
Confidence 43
No 61
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.79 E-value=1.5e-17 Score=160.96 Aligned_cols=225 Identities=16% Similarity=0.103 Sum_probs=168.4
Q ss_pred hHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q psy597 291 DVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 370 (546)
Q Consensus 291 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 370 (546)
.....+...|.+|...|++++|+.+|.+++.+.+.. ++.+..+.++.++|.+|...|++++|+.+|++++.+....
T Consensus 35 ~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~-- 110 (292)
T 1qqe_A 35 EAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKA--GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR-- 110 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc--
Confidence 345567777889999999999999999999998876 5667778999999999999999999999999999998665
Q ss_pred CCChHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q psy597 371 KEHPDVAKQLNNLALLCQNQ-SKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRA 449 (546)
Q Consensus 371 ~~~~~~~~~~~~la~~~~~~-g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~ 449 (546)
++....+.++.++|.+|... |++++|+.+|++|+++.... ++......++.++|.+|..+|++++|+.+|++++.+.
T Consensus 111 g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 188 (292)
T 1qqe_A 111 GQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD--QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSS 188 (292)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 44455678999999999996 99999999999999997653 2233446789999999999999999999999999986
Q ss_pred hhcccCcc---cCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy597 450 HEREFGAC---DGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526 (546)
Q Consensus 450 ~~~~~~~~---~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al 526 (546)
+....... ......+.++...|++..|..+|++++.+..... .......+..++..+ ..++.++ ++.++
T Consensus 189 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~---~~~~~~~l~~l~~~~-~~~~~~~----~~~A~ 260 (292)
T 1qqe_A 189 MGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA---DSRESNFLKSLIDAV-NEGDSEQ----LSEHC 260 (292)
T ss_dssp SSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------------HHHHHHHHHHH-HTTCTTT----HHHHH
T ss_pred hcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC---CcHHHHHHHHHHHHH-HcCCHHH----HHHHH
Confidence 65432110 1233455667777888888888888876521110 111122344555544 3455444 55566
Q ss_pred HHh
Q psy597 527 TRA 529 (546)
Q Consensus 527 ~~~ 529 (546)
..+
T Consensus 261 ~~~ 263 (292)
T 1qqe_A 261 KEF 263 (292)
T ss_dssp HHH
T ss_pred HHh
Confidence 554
No 62
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.78 E-value=2.3e-17 Score=155.55 Aligned_cols=221 Identities=12% Similarity=0.075 Sum_probs=184.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhH
Q psy597 213 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDV 292 (546)
Q Consensus 213 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 292 (546)
..+.++..+|.++...|++++|+.+|.++++..+... ++.+..
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~-------------------------------------~~~~~~ 78 (258)
T 3uq3_A 36 KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMR-------------------------------------ADYKVI 78 (258)
T ss_dssp CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-------------------------------------CCHHHH
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccc-------------------------------------cchHHH
Confidence 3457899999999999999999999999999876542 234555
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q psy597 293 ATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKE 372 (546)
Q Consensus 293 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 372 (546)
+.++..+|.++...|++++|+.+|++++.+. .. +.++...|++++|+..+++++..
T Consensus 79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------~~----------~~~~~~~~~~~~a~~~~~~~~~~-------- 134 (258)
T 3uq3_A 79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEH------RT----------ADILTKLRNAEKELKKAEAEAYV-------- 134 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------CC----------HHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcC------ch----------hHHHHHHhHHHHHHHHHHHHHHc--------
Confidence 8899999999999999999999999999873 11 45677788899999999999886
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhc
Q psy597 373 HPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 452 (546)
Q Consensus 373 ~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~ 452 (546)
.|....++..+|.++...|++++|+.+|++++.. .|....++.++|.+|...|++++|+.+|++++...+..
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~ 206 (258)
T 3uq3_A 135 NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--------APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF 206 (258)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHH
Confidence 4888999999999999999999999999999998 67777899999999999999999999999999876543
Q ss_pred ccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q psy597 453 EFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASC 508 (546)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~ 508 (546)
. ......+.++...|++..|...|.+++.+...... .|....++..++.+
T Consensus 207 ~----~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 207 V----RAYIRKATAQIAVKEYASALETLDAARTKDAEVNN--GSSAREIDQLYYKA 256 (258)
T ss_dssp H----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT--TTTHHHHHHHHHHT
T ss_pred H----HHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcC--CCchHHHHHHHHHh
Confidence 2 33455677788999999999999999988654432 36666666666654
No 63
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.78 E-value=6.6e-18 Score=156.96 Aligned_cols=212 Identities=15% Similarity=0.123 Sum_probs=167.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHH
Q psy597 215 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVAT 294 (546)
Q Consensus 215 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 294 (546)
+..++.+|.+++..|+|++|+..|+++++.. ++....
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-------------------------------------------~~~~~~ 43 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLT-------------------------------------------NNQDSV 43 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-------------------------------------------TTCCHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcc-------------------------------------------CCCCcH
Confidence 4789999999999999999999999999852 113335
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q psy597 295 MLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHP 374 (546)
Q Consensus 295 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 374 (546)
+++.+|.++...|++++|+.+|++++.. .|....++..+|.+|...|++++|+.+|++++.+. ++++
T Consensus 44 ~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-----p~~~ 110 (228)
T 4i17_A 44 TAYNCGVCADNIKKYKEAADYFDIAIKK--------NYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAV-----PGNA 110 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT--------TCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCH
T ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHh--------CcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-----CCcH
Confidence 6778999999999999999999999976 45568899999999999999999999999999985 2222
Q ss_pred H----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 375 D----VAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSN--VAKTKNNLASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 375 ~----~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~--~~~~~~~La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
. .+.++.++|.++...|++++|+.+|++++++ +|. .+.++.++|.+|...|+. .++++..+
T Consensus 111 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~l~~~~~~~~~~-----~~~~a~~~ 177 (228)
T 4i17_A 111 TIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--------TSKKWKTDALYSLGVLFYNNGAD-----VLRKATPL 177 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--------SCHHHHHHHHHHHHHHHHHHHHH-----HHHHHGGG
T ss_pred HHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--------CCCcccHHHHHHHHHHHHHHHHH-----HHHHHHhc
Confidence 1 2367999999999999999999999999998 888 899999999999877653 34444433
Q ss_pred hhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q psy597 449 AHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCY 509 (546)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y 509 (546)
.+.. ............+.+..|..+|++++++ .|....+...++.+.
T Consensus 178 ~~~~------~~~~~~~~~~~~~~~~~A~~~~~~a~~l--------~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 178 ASSN------KEKYASEKAKADAAFKKAVDYLGEAVTL--------SPNRTEIKQMQDQVK 224 (228)
T ss_dssp TTTC------HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHH
T ss_pred ccCC------HHHHHHHHHHHHHHHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHH
Confidence 2111 1111222344556778888888888877 666666777776664
No 64
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.77 E-value=1.1e-17 Score=155.50 Aligned_cols=199 Identities=14% Similarity=0.079 Sum_probs=150.6
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q psy597 293 ATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKE 372 (546)
Q Consensus 293 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 372 (546)
+..++.+|.++...|++++|+..|++++.+.+. ....+++++|.++...|++++|+.+|++++..
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-------- 71 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNN-------QDSVTAYNCGVCADNIKKYKEAADYFDIAIKK-------- 71 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCC-------CCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--------
Confidence 378999999999999999999999999998420 22467788999999999999999999999987
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHH-------HHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy597 373 HPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVA-------KTKNNLASCYLKQGKYKEAEILYKQV 445 (546)
Q Consensus 373 ~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~-------~~~~~La~~y~~~g~~~eA~~~~~~a 445 (546)
.|....++..+|.++...|++++|+.+|++++++ .|... .++.++|.++...|++++|+..|+++
T Consensus 72 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a 143 (228)
T 4i17_A 72 NYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKA--------VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHA 143 (228)
T ss_dssp TCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHH
Confidence 4888999999999999999999999999999998 44433 67999999999999999999999999
Q ss_pred HHhhhh--cccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy597 446 LTRAHE--REFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYK 523 (546)
Q Consensus 446 l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~ 523 (546)
+...|. .. .....++.++...| ...+.++..+ .... .. ...+......+.+++|+.+|+
T Consensus 144 l~~~p~~~~~----~~~~~l~~~~~~~~-----~~~~~~a~~~-----~~~~---~~--~~~~~~~~~~~~~~~A~~~~~ 204 (228)
T 4i17_A 144 TDVTSKKWKT----DALYSLGVLFYNNG-----ADVLRKATPL-----ASSN---KE--KYASEKAKADAAFKKAVDYLG 204 (228)
T ss_dssp TTSSCHHHHH----HHHHHHHHHHHHHH-----HHHHHHHGGG-----TTTC---HH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCcccH----HHHHHHHHHHHHHH-----HHHHHHHHhc-----ccCC---HH--HHHHHHHHHHHHHHHHHHHHH
Confidence 987443 21 11222233332222 1222333222 1111 11 123344555677899999999
Q ss_pred HHHHHhhhhc
Q psy597 524 QVLTRAHERE 533 (546)
Q Consensus 524 ~al~~~~~~~ 533 (546)
+++++.|++.
T Consensus 205 ~a~~l~p~~~ 214 (228)
T 4i17_A 205 EAVTLSPNRT 214 (228)
T ss_dssp HHHHHCTTCH
T ss_pred HHhhcCCCCH
Confidence 9999987653
No 65
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.76 E-value=3.7e-17 Score=167.90 Aligned_cols=153 Identities=14% Similarity=0.158 Sum_probs=147.1
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHH
Q psy597 297 NILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDV 376 (546)
Q Consensus 297 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 376 (546)
...+..+..+|+|++|+.++++++++..+.+|+++|.++.++++||.+|..+|+|++|+.++++++++.++.+|++||.+
T Consensus 313 le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~ 392 (490)
T 3n71_A 313 LEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQL 392 (490)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 34455677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q psy597 377 AKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRA 449 (546)
Q Consensus 377 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~ 449 (546)
+..+++||.+|..+|++++|+.+|++|+++.+..+|+++|....+..+++.++..++.+++|...|.++.+.+
T Consensus 393 a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 393 GMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998765
No 66
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.76 E-value=2e-17 Score=171.32 Aligned_cols=175 Identities=20% Similarity=0.170 Sum_probs=158.3
Q ss_pred CChhHHHHHHHHHHHHHHhhcH-HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKY-KEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE 366 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 366 (546)
..+..+.+++.+|.++...|++ ++|+.+|++++.+ .|....++..+|.+|...|++++|+.+|++++++.
T Consensus 97 ~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~- 167 (474)
T 4abn_A 97 SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--------EPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC- 167 (474)
T ss_dssp TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC-
T ss_pred cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-
Confidence 4567788999999999999999 9999999999998 35557899999999999999999999999999883
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc-----
Q psy597 367 KVLGKEHPDVAKQLNNLALLCQNQ---------SKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ----- 432 (546)
Q Consensus 367 ~~~~~~~~~~~~~~~~la~~~~~~---------g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~----- 432 (546)
|. ..++.++|.++... |++++|+.+|++++++ +|....++.++|.+|...
T Consensus 168 -------p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~ 231 (474)
T 4abn_A 168 -------KN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--------DVLDGRSWYILGNAYLSLYFNTG 231 (474)
T ss_dssp -------CC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHTT
T ss_pred -------CC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHhhc
Confidence 55 58999999999999 9999999999999999 788889999999999999
Q ss_pred ---CCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCH---HHHHHHHHHH
Q psy597 433 ---GKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDS---NVAKTKNNLA 506 (546)
Q Consensus 433 ---g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~---~~~~~~~~La 506 (546)
|++++|+.+|++++.+ .| ....++.++|
T Consensus 232 ~~~g~~~~A~~~~~~al~~----------------------------------------------~p~~~~~~~~~~~lg 265 (474)
T 4abn_A 232 QNPKISQQALSAYAQAEKV----------------------------------------------DRKASSNPDLHLNRA 265 (474)
T ss_dssp CCHHHHHHHHHHHHHHHHH----------------------------------------------CGGGGGCHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHh----------------------------------------------CCCcccCHHHHHHHH
Confidence 8888888888888875 44 6778999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHhhhhc
Q psy597 507 SCYLKQGKYKEAEILYKQVLTRAHERE 533 (546)
Q Consensus 507 ~~y~~~g~~~~A~~~~~~al~~~~~~~ 533 (546)
.+|...|++++|+.+|++++++.|+..
T Consensus 266 ~~~~~~g~~~~A~~~~~~al~l~p~~~ 292 (474)
T 4abn_A 266 TLHKYEESYGEALEGFSQAAALDPAWP 292 (474)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 999999999999999999999887643
No 67
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.75 E-value=6e-18 Score=161.42 Aligned_cols=231 Identities=13% Similarity=0.027 Sum_probs=181.3
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCCh
Q psy597 211 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHP 290 (546)
Q Consensus 211 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 290 (546)
.|..+.+++.+|.++...|++++|+.+|+++++. .|
T Consensus 39 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------------------------------------------~~ 74 (275)
T 1xnf_A 39 DDERAQLLYERGVLYDSLGLRALARNDFSQALAI--------------------------------------------RP 74 (275)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------------------------CC
T ss_pred CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--------------------------------------------CC
Confidence 5789999999999999999999999999999984 34
Q ss_pred hHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q psy597 291 DVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 370 (546)
Q Consensus 291 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 370 (546)
....++..+|.+|...|++++|+.+|++++.+. |....++..+|.+|...|++++|+.+|++++...
T Consensus 75 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~----- 141 (275)
T 1xnf_A 75 DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--------PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD----- 141 (275)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--------ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----
Confidence 456789999999999999999999999999883 3346789999999999999999999999999874
Q ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q psy597 371 KEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAH 450 (546)
Q Consensus 371 ~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~ 450 (546)
|........++ ++...|++++|+.++.+++.. .|.... ...++.++...+++++|+..+.+++...+
T Consensus 142 ---~~~~~~~~~~~-~~~~~~~~~~A~~~~~~~~~~--------~~~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 208 (275)
T 1xnf_A 142 ---PNDPFRSLWLY-LAEQKLDEKQAKEVLKQHFEK--------SDKEQW-GWNIVEFYLGNISEQTLMERLKADATDNT 208 (275)
T ss_dssp ---TTCHHHHHHHH-HHHHHHCHHHHHHHHHHHHHH--------SCCCST-HHHHHHHHTTSSCHHHHHHHHHHHCCSHH
T ss_pred ---CCChHHHHHHH-HHHHhcCHHHHHHHHHHHHhc--------CCcchH-HHHHHHHHHHhcCHHHHHHHHHHHhcccc
Confidence 33333333334 346679999999999999887 222222 24578888899999999999999988766
Q ss_pred hcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q psy597 451 EREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILY 522 (546)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~ 522 (546)
.............+.++...|++++|...|++++.. .|... ...+.++...|++++|+..+
T Consensus 209 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~---~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 209 SLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--------NVHNF---VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CCTTC---HHHHHHHHHHHHHHHC----
T ss_pred cccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--------CchhH---HHHHHHHHHHHHHHhhHHHH
Confidence 432222344556777788999999999999999876 34322 23477888999999998887
No 68
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.75 E-value=2e-17 Score=157.12 Aligned_cols=188 Identities=19% Similarity=0.237 Sum_probs=160.0
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
..+..+..++.+|..++..|++++|+..|++++... ++++....+++.+|.+|...|++++|+..|++++...
T Consensus 10 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-- 82 (261)
T 3qky_A 10 LRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-----RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIY-- 82 (261)
T ss_dssp -CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-----SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC--
Confidence 356667889999999999999999999999999874 5566668899999999999999999999999999985
Q ss_pred hcCCCChHHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH--------------HHH
Q psy597 368 VLGKEHPDVAKQLNNLALLCQN--------QSKYEEVERYYQRALEIYELKLGPDDSNVAKTK--------------NNL 425 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~~--------~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~--------------~~L 425 (546)
++++....+++.+|.++.. .|++++|+..|++++... |+++....++ +.+
T Consensus 83 ---p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~~~~~~~~~~~~~~~l 154 (261)
T 3qky_A 83 ---QIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-----PNHELVDDATQKIRELRAKLARKQYEA 154 (261)
T ss_dssp ---TTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-----TTCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-----cCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5557788999999999999 999999999999999982 3344444444 888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q psy597 426 ASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNL 505 (546)
Q Consensus 426 a~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~L 505 (546)
|.+|...|++++|+..|++++...| +++....++..+
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p-------------------------------------------~~~~~~~a~~~l 191 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYP-------------------------------------------DTPWADDALVGA 191 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-------------------------------------------TSTTHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCC-------------------------------------------CCchHHHHHHHH
Confidence 9999999999999999998887633 234467788999
Q ss_pred HHHHHHc----------CCHHHHHHHHHHHHHHhhhhc
Q psy597 506 ASCYLKQ----------GKYKEAEILYKQVLTRAHERE 533 (546)
Q Consensus 506 a~~y~~~----------g~~~~A~~~~~~al~~~~~~~ 533 (546)
|.+|... |++++|+.+|+++++..|+++
T Consensus 192 ~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 192 MRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence 9999877 999999999999999988764
No 69
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.74 E-value=4.6e-17 Score=152.20 Aligned_cols=180 Identities=19% Similarity=0.149 Sum_probs=158.4
Q ss_pred HhhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHh
Q psy597 203 QQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQIL 282 (546)
Q Consensus 203 ~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l 282 (546)
.+.......|....++..+|.++...|++++|+..|+++++.
T Consensus 45 ~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-------------------------------------- 86 (243)
T 2q7f_A 45 AFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALEL-------------------------------------- 86 (243)
T ss_dssp THHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------------------
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------------------------------------
Confidence 334444456777899999999999999999999999999984
Q ss_pred ccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy597 283 GSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRAL 362 (546)
Q Consensus 283 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 362 (546)
.|....++..+|.++...|++++|+.+|++++... |....++..+|.++...|++++|+.++++++
T Consensus 87 ------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 152 (243)
T 2q7f_A 87 ------DSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG--------MENGDLFYMLGTVLVKLEQPKLALPYLQRAV 152 (243)
T ss_dssp ------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--------CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred ------CCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34456789999999999999999999999999874 2235679999999999999999999999999
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHH
Q psy597 363 EIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILY 442 (546)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~ 442 (546)
... |....++..+|.++...|++++|+.+|++++.. .|....++..+|.+|...|++++|+.+|
T Consensus 153 ~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~ 216 (243)
T 2q7f_A 153 ELN--------ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQ--------DPGHADAFYNAGVTYAYKENREKALEML 216 (243)
T ss_dssp HHC--------TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred HhC--------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHccCHHHHHHHH
Confidence 883 666778999999999999999999999999998 6667788999999999999999999999
Q ss_pred HHHHHhhh
Q psy597 443 KQVLTRAH 450 (546)
Q Consensus 443 ~~al~~~~ 450 (546)
++++...+
T Consensus 217 ~~~~~~~p 224 (243)
T 2q7f_A 217 DKAIDIQP 224 (243)
T ss_dssp HHHHHHCT
T ss_pred HHHHccCc
Confidence 99998744
No 70
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.73 E-value=1.5e-16 Score=153.94 Aligned_cols=197 Identities=18% Similarity=0.102 Sum_probs=161.6
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCCh
Q psy597 211 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHP 290 (546)
Q Consensus 211 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 290 (546)
.|.....+...+..+...|+|++|+..+.++++..+... ...
T Consensus 71 ~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~--------------------------------------~~~ 112 (293)
T 2qfc_A 71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHP--------------------------------------EFQ 112 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCH--------------------------------------HHH
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCCh--------------------------------------hHH
Confidence 466777888899999999999999999999987422111 112
Q ss_pred hHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q psy597 291 DVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 370 (546)
Q Consensus 291 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 370 (546)
.....++.+|.++...|++++|+.+|++++...... .+....+.+++++|.+|...|++++|+.+|++++.+.+..
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~-- 188 (293)
T 2qfc_A 113 QFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG--IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL-- 188 (293)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCS--SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--
Confidence 344567779999999999999999999999875443 3444567899999999999999999999999999987765
Q ss_pred CCChH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHh
Q psy597 371 KEHPD-VAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEA-EILYKQVLTR 448 (546)
Q Consensus 371 ~~~~~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA-~~~~~~al~~ 448 (546)
++.+. ...+++++|.+|..+|++++|+.+|++++++.... .+....+.+++++|.+|..+|++++| ..+|++++.+
T Consensus 189 ~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~--~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 189 HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI--NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 23333 33899999999999999999999999999997543 34555788999999999999999999 8889999987
Q ss_pred hhh
Q psy597 449 AHE 451 (546)
Q Consensus 449 ~~~ 451 (546)
...
T Consensus 267 ~~~ 269 (293)
T 2qfc_A 267 FDI 269 (293)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 71
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.73 E-value=1.3e-16 Score=142.09 Aligned_cols=177 Identities=19% Similarity=0.189 Sum_probs=154.8
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
+.......+..+|.++...|++++|+..|++++.. .|....++..+|.++...|++++|+.++++++...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-- 72 (186)
T 3as5_A 3 NDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDA--------DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-- 72 (186)
T ss_dssp -CCHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCT--------TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred ccchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--
Confidence 34566788999999999999999999999998865 23346789999999999999999999999999883
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 368 VLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 447 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~ 447 (546)
|....++..+|.++...|++++|+.++++++.. .|....++..+|.++...|++++|+.++++++.
T Consensus 73 ------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 138 (186)
T 3as5_A 73 ------PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA--------NPINFNVRFRLGVALDNLGRFDEAIDSFKIALG 138 (186)
T ss_dssp ------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHh
Confidence 666788999999999999999999999999998 666778899999999999999999999999887
Q ss_pred hhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 448 RAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 527 (546)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~ 527 (546)
. .|....++..+|.++...|++++|..+++++++
T Consensus 139 ~----------------------------------------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 139 L----------------------------------------------RPNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp H----------------------------------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred c----------------------------------------------CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5 334467889999999999999999999999999
Q ss_pred Hhhhhcc
Q psy597 528 RAHEREF 534 (546)
Q Consensus 528 ~~~~~~~ 534 (546)
..|+...
T Consensus 173 ~~~~~~~ 179 (186)
T 3as5_A 173 LDEGASV 179 (186)
T ss_dssp HHHCCCG
T ss_pred cCCCchh
Confidence 9876543
No 72
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.73 E-value=1.7e-16 Score=141.34 Aligned_cols=174 Identities=21% Similarity=0.223 Sum_probs=155.3
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChh
Q psy597 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPD 291 (546)
Q Consensus 212 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (546)
+.....+..+|.++...|++++|+..|++++. ..|.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--------------------------------------------~~~~ 40 (186)
T 3as5_A 5 DIRQVYYRDKGISHAKAGRYSQAVMLLEQVYD--------------------------------------------ADAF 40 (186)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCC--------------------------------------------TTSC
T ss_pred chhhHHHHHHHHHHHHhcCHHHHHHHHHHHHH--------------------------------------------hCcc
Confidence 45678899999999999999999999998876 3345
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 371 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 371 (546)
...++..+|.++...|++++|+.++++++... |....++..+|.++...|++++|+.++++++...
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------ 106 (186)
T 3as5_A 41 DVDVALHLGIAYVKTGAVDRGTELLERSLADA--------PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN------ 106 (186)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC------
Confidence 57789999999999999999999999999873 3346789999999999999999999999999883
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 372 EHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 372 ~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
|....++..+|.++...|++++|+.++++++.. .|....++..+|.++...|++++|..++++++...+.
T Consensus 107 --~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 176 (186)
T 3as5_A 107 --PINFNVRFRLGVALDNLGRFDEAIDSFKIALGL--------RPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEG 176 (186)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred --cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 666788999999999999999999999999998 6666789999999999999999999999999998766
Q ss_pred cc
Q psy597 452 RE 453 (546)
Q Consensus 452 ~~ 453 (546)
..
T Consensus 177 ~~ 178 (186)
T 3as5_A 177 AS 178 (186)
T ss_dssp CC
T ss_pred ch
Confidence 43
No 73
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.73 E-value=3.1e-16 Score=144.47 Aligned_cols=175 Identities=23% Similarity=0.302 Sum_probs=154.9
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
..|..+.++..+|.++...|++++|+.+|++++... |....++..+|.++...|++++|+.+|++++...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-- 72 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSD--------PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-- 72 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--------ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--
Confidence 457888999999999999999999999999999873 3346789999999999999999999999999883
Q ss_pred hcCCCChHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy597 368 VLGKEHPDVAKQLNNLALLCQNQ-SKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 446 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~~~-g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al 446 (546)
|....++..+|.++... |++++|+.+|++++.. +..|....++..+|.++...|++++|+.+|++++
T Consensus 73 ------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 140 (225)
T 2vq2_A 73 ------PDSAEINNNYGWFLCGRLNRPAESMAYFDKALAD------PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSL 140 (225)
T ss_dssp ------TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTS------TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ------CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcC------cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66678899999999999 9999999999999882 3467788899999999999999999999999988
Q ss_pred HhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy597 447 TRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526 (546)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al 526 (546)
.. .|....++..+|.++...|++++|..++++++
T Consensus 141 ~~----------------------------------------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 174 (225)
T 2vq2_A 141 AA----------------------------------------------QPQFPPAFKELARTKMLAGQLGDADYYFKKYQ 174 (225)
T ss_dssp HH----------------------------------------------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred Hh----------------------------------------------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 75 33445678899999999999999999999999
Q ss_pred HHhh
Q psy597 527 TRAH 530 (546)
Q Consensus 527 ~~~~ 530 (546)
+..|
T Consensus 175 ~~~~ 178 (225)
T 2vq2_A 175 SRVE 178 (225)
T ss_dssp HHHC
T ss_pred HhCC
Confidence 9876
No 74
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.72 E-value=1.5e-15 Score=137.84 Aligned_cols=159 Identities=13% Similarity=0.150 Sum_probs=140.9
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
+++..+.++..+|.++...|++++|+.++++++.+++.. ++.+..+.++.++|.++...|++++|+.++.+++.+.+.
T Consensus 21 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 98 (203)
T 3gw4_A 21 HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKS--GDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLAS 98 (203)
T ss_dssp STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 345678899999999999999999999999999999877 677888999999999999999999999999999999875
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 368 VLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 447 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~ 447 (546)
. +.++...+.++.++|.++...|++++|+.++++++.+.... ++....+.++.++|.++...|++++|..++++++.
T Consensus 99 ~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 99 L-PEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA--DDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp S-CCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred c-CccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc--cchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 5 22333778899999999999999999999999999997765 44555677889999999999999999999999999
Q ss_pred hhhh
Q psy597 448 RAHE 451 (546)
Q Consensus 448 ~~~~ 451 (546)
+...
T Consensus 176 ~~~~ 179 (203)
T 3gw4_A 176 IFAE 179 (203)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 75
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.72 E-value=2.9e-16 Score=161.30 Aligned_cols=153 Identities=18% Similarity=0.168 Sum_probs=145.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHHHH
Q psy597 219 HNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNI 298 (546)
Q Consensus 219 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 298 (546)
...+..+..+|+|++|+.+|++++++..+.. ++++|..+.++.+
T Consensus 313 le~a~~~~~qg~~~eA~~l~~~aL~~~~~~l------------------------------------g~~Hp~~a~~~~n 356 (490)
T 3n71_A 313 LEKIDKARSEGLYHEVVKLCRECLEKQEPVF------------------------------------ADTNLYVLRLLSI 356 (490)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHTTTB------------------------------------CTTSHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhc------------------------------------CCCCHHHHHHHHH
Confidence 3445567789999999999999999988887 8899999999999
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Q psy597 299 LALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAK 378 (546)
Q Consensus 299 la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 378 (546)
+|.+|..+|+|++|+.++++++.+..+.+|++||.++.++++||.+|..+|+|++|+.+|++|+++.+..+|++||.+..
T Consensus 357 La~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 436 (490)
T 3n71_A 357 ASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKD 436 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy597 379 QLNNLALLCQNQSKYEEVERYYQRALEIY 407 (546)
Q Consensus 379 ~~~~la~~~~~~g~~~eA~~~~~~al~~~ 407 (546)
+..+++.++..++.+.+|+..|.++.+.+
T Consensus 437 ~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 437 LEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999997754
No 76
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.71 E-value=4.7e-16 Score=150.47 Aligned_cols=195 Identities=19% Similarity=0.106 Sum_probs=162.0
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChh
Q psy597 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPD 291 (546)
Q Consensus 212 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (546)
+.....+...+..++..|+|++|+..++++++. ....+.
T Consensus 72 ~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~-----------------------------------------~~~~~~ 110 (293)
T 3u3w_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKK-----------------------------------------EEYHPE 110 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----------------------------------------CCCCHH
T ss_pred chhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcc-----------------------------------------ccCChH
Confidence 455566677788999999999999999999873 112222
Q ss_pred ---HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy597 292 ---VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 368 (546)
Q Consensus 292 ---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 368 (546)
....+..+|.++...|++++|+.+|++++.+.... .+....+.+++++|.+|...|++++|+.+|+++++..+..
T Consensus 111 ~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 188 (293)
T 3u3w_A 111 FQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG--IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL 188 (293)
T ss_dssp HHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCC--SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhccc--ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Confidence 24455668999999999999999999999864332 3444557789999999999999999999999999988765
Q ss_pred cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHH
Q psy597 369 LGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGK-YKEAEILYKQVLT 447 (546)
Q Consensus 369 ~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~-~~eA~~~~~~al~ 447 (546)
. .+.+..+.+++++|.+|..+|++++|+.++++++++.... .+.+..+.++.++|.+|..+|+ +++|+.+|++++.
T Consensus 189 ~-~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 189 H-DNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI--NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp S-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred c-cchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHc--CcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 2 3557788899999999999999999999999999998776 4466778999999999999995 6999999999999
Q ss_pred hhhhc
Q psy597 448 RAHER 452 (546)
Q Consensus 448 ~~~~~ 452 (546)
++...
T Consensus 266 i~~~~ 270 (293)
T 3u3w_A 266 FFDIL 270 (293)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 87653
No 77
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.71 E-value=5.7e-16 Score=149.61 Aligned_cols=225 Identities=14% Similarity=0.142 Sum_probs=173.4
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCCh
Q psy597 211 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHP 290 (546)
Q Consensus 211 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 290 (546)
.|....++..++..+...|++++|+..+++++. ...+|
T Consensus 61 ~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~------------------------------------------~~~~P 98 (291)
T 3mkr_A 61 SAPELQAVRMFAEYLASHSRRDAIVAELDREMS------------------------------------------RSVDV 98 (291)
T ss_dssp SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHH------------------------------------------SCCCC
T ss_pred CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHh------------------------------------------cccCC
Confidence 455788999999999999999999999999886 22356
Q ss_pred hHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q psy597 291 DVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 370 (546)
Q Consensus 291 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 370 (546)
..+.+++.+|.++...|++++|+..|++ + ....++..+|.++...|++++|+..|++++...
T Consensus 99 ~~~~~~~~la~~~~~~g~~~~Al~~l~~----------~---~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~----- 160 (291)
T 3mkr_A 99 TNTTFLLMAASIYFYDQNPDAALRTLHQ----------G---DSLECMAMTVQILLKLDRLDLARKELKKMQDQD----- 160 (291)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHTT----------C---CSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHhC----------C---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----
Confidence 7778899999999999999999999887 1 225688899999999999999999999999873
Q ss_pred CCChHHHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 371 KEHPDVAKQLNN--LALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 371 ~~~~~~~~~~~~--la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
|........ +..++...|++++|+.+|+++++. .|..+.+++++|.++..+|++++|+..|++++..
T Consensus 161 ---p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 161 ---EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--------CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp ---TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 332222222 223344568999999999999998 6777889999999999999999999999999998
Q ss_pred hhhcccCcccCCChhhHHHHhhchhhH-HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q psy597 449 AHEREFGACDGDNKPIWQDRQKNKAKN-REKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILY 522 (546)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~ 522 (546)
.|.+. ......+.++...|+..+ +..++++++++ +|..+.+. .+..+.+.|++|..-|
T Consensus 230 ~p~~~----~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~--------~P~~~~~~----d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 230 DSGHP----ETLINLVVLSQHLGKPPEVTNRYLSQLKDA--------HRSHPFIK----EYRAKENDFDRLVLQY 288 (291)
T ss_dssp CTTCH----HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--------CTTCHHHH----HHHHHHHHHHHHHHHH
T ss_pred CCCCH----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--------CCCChHHH----HHHHHHHHHHHHHHHc
Confidence 66543 335566667788888876 56788888877 45544332 3444555555555443
No 78
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.71 E-value=2.9e-16 Score=143.81 Aligned_cols=169 Identities=15% Similarity=0.193 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH----------------HHHHHHHcCCHHHHHH
Q psy597 293 ATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNN----------------LAVLYGKRGKYKEAEP 356 (546)
Q Consensus 293 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~----------------la~~~~~~g~~~~A~~ 356 (546)
+..+...|..+...|++++|+..|++++.. .|....+++. +|.+|...|++++|+.
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 75 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIAL--------NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYL 75 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence 456788999999999999999999999998 5666777888 9999999999999999
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCH-
Q psy597 357 LCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKY- 435 (546)
Q Consensus 357 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~- 435 (546)
+|++++++ +|....++.++|.++...|++++|+.+|++++++ +|..+.+++++|.+|...|+.
T Consensus 76 ~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~~~~~ 139 (208)
T 3urz_A 76 FYKELLQK--------APNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--------EADNLAANIFLGNYYYLTAEQE 139 (208)
T ss_dssp HHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHHhHHH
Confidence 99999998 4778889999999999999999999999999998 888889999999998877643
Q ss_pred -HHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCC
Q psy597 436 -KEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGK 514 (546)
Q Consensus 436 -~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~ 514 (546)
..+...|++++.. .| ...+++.+|.++...|+
T Consensus 140 ~~~~~~~~~~~~~~----------------------------------------------~~-~~~a~~~~g~~~~~~~~ 172 (208)
T 3urz_A 140 KKKLETDYKKLSSP----------------------------------------------TK-MQYARYRDGLSKLFTTR 172 (208)
T ss_dssp HHHHHHHHC---CC----------------------------------------------CH-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCC----------------------------------------------Cc-hhHHHHHHHHHHHHccC
Confidence 3334444433221 22 22355667777777788
Q ss_pred HHHHHHHHHHHHHHhhhh
Q psy597 515 YKEAEILYKQVLTRAHER 532 (546)
Q Consensus 515 ~~~A~~~~~~al~~~~~~ 532 (546)
+++|+.+|++++++.|+.
T Consensus 173 ~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 173 YEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHTTTSCCH
T ss_pred HHHHHHHHHHHHHhCCCH
Confidence 888888888888777653
No 79
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.70 E-value=1.5e-15 Score=140.88 Aligned_cols=181 Identities=10% Similarity=0.052 Sum_probs=153.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHH
Q psy597 215 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVAT 294 (546)
Q Consensus 215 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 294 (546)
+..++.+|..++..|+|++|+..|++++.. .+..+....
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~-----------------------------------------~p~~~~~~~ 42 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNR-----------------------------------------YPFGPYSQQ 42 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------------------------------------CTTSTTHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------------------------------------CCCChHHHH
Confidence 467899999999999999999999999985 345666778
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH------------------cCCHHHHHH
Q psy597 295 MLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGK------------------RGKYKEAEP 356 (546)
Q Consensus 295 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~------------------~g~~~~A~~ 356 (546)
+++.+|.+|...|++++|+..|++++... ++++....+++.+|.++.. .|++++|+.
T Consensus 43 a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-----P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 117 (225)
T 2yhc_A 43 VQLDLIYAYYKNADLPLAQAAIDRFIRLN-----PTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFS 117 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHH
Confidence 99999999999999999999999999885 5556667789999999886 579999999
Q ss_pred HHHHHHHHHHHhcCCCChHHHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Q psy597 357 LCKRALEIREKVLGKEHPDVAK--------------QLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTK 422 (546)
Q Consensus 357 ~~~~al~~~~~~~~~~~~~~~~--------------~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~ 422 (546)
.|+++++.. ++++.... ....+|.+|...|++++|+..|+++++.+ |+++....++
T Consensus 118 ~~~~~l~~~-----P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~ 187 (225)
T 2yhc_A 118 DFSKLVRGY-----PNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDY-----PDTQATRDAL 187 (225)
T ss_dssp HHHHHHTTC-----TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-----TTSHHHHHHH
T ss_pred HHHHHHHHC-----cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-----cCCCccHHHH
Confidence 999999875 33333222 22678999999999999999999999983 5566677899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 423 NNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 423 ~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
..+|.+|..+|++++|+..++.+....|.
T Consensus 188 ~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 188 PLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 99999999999999999999988876544
No 80
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.70 E-value=6.5e-17 Score=174.97 Aligned_cols=176 Identities=15% Similarity=0.065 Sum_probs=151.7
Q ss_pred CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCC
Q psy597 209 YEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHD 288 (546)
Q Consensus 209 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 288 (546)
..+|.++.+++..| ...|++++|+..|+++++..-... ...
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~------------------------------------~~~ 428 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDAD------------------------------------GVD 428 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------------------------------------------C
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhccccc------------------------------------ccc
Confidence 44566666666666 789999999999999982111101 225
Q ss_pred ChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy597 289 HPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 368 (546)
Q Consensus 289 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 368 (546)
.|....+++.+|.+|...|++++|+..|++++... |....+++++|.++...|++++|+..|++++++.
T Consensus 429 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--- 497 (681)
T 2pzi_A 429 FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV--------GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTF--- 497 (681)
T ss_dssp CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--------CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS---
T ss_pred cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC--------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---
Confidence 67778889999999999999999999999999984 3447899999999999999999999999999994
Q ss_pred cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 369 LGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 369 ~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
|....++.++|.++...|++++ +.+|++++++ +|....+++++|.+|..+|++++|+..|++++++
T Consensus 498 -----P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 563 (681)
T 2pzi_A 498 -----PGELAPKLALAATAELAGNTDE-HKFYQTVWST--------NDGVISAAFGLARARSAEGDRVGAVRTLDEVPPT 563 (681)
T ss_dssp -----TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT
T ss_pred -----CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--------CCchHHHHHHHHHHHHHcCCHHHHHHHHHhhccc
Confidence 7788999999999999999999 9999999999 8888899999999999999999999999999876
No 81
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.70 E-value=5.5e-16 Score=151.17 Aligned_cols=211 Identities=13% Similarity=0.024 Sum_probs=167.5
Q ss_pred ChhHHHHHHHHHHHHHH-------hhcH-------HHHHHHHHHHHH-HHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHH
Q psy597 289 HPDVATMLNILALVYRD-------QNKY-------KEAANLLNDALT-IREKTLGENHAAVAATLNNLAVLYGKRGKYKE 353 (546)
Q Consensus 289 ~~~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~~al~-~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~ 353 (546)
.|..+.+|+.+|.++.. .|++ ++|...|++|+. + .|....+|..+|.++...|++++
T Consensus 46 ~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~--------~p~~~~~~~~~~~~~~~~~~~~~ 117 (308)
T 2ond_A 46 LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL--------LKKNMLLYFAYADYEESRMKYEK 117 (308)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT--------TTTCHHHHHHHHHHHHHTTCHHH
T ss_pred cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHhcCCHHH
Confidence 35566778888888764 4665 899999999997 4 34557789999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCChHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH-
Q psy597 354 AEPLCKRALEIREKVLGKEHPDVAK-QLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK- 431 (546)
Q Consensus 354 A~~~~~~al~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~- 431 (546)
|...|++++++. |.... ++.++|.++...|++++|+..|+++++. .|....++...+.+...
T Consensus 118 A~~~~~~al~~~--------p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~~a~~~~~~ 181 (308)
T 2ond_A 118 VHSIYNRLLAIE--------DIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--------ARTRHHVYVTAALMEYYC 181 (308)
T ss_dssp HHHHHHHHHTSS--------SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--------TTCCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcc--------ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHH
Confidence 999999999863 44343 8999999999999999999999999986 34445556655555443
Q ss_pred cCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHHH
Q psy597 432 QGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDS-NVAKTKNNLASCYL 510 (546)
Q Consensus 432 ~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~-~~~~~~~~La~~y~ 510 (546)
.|++++|...|++++...|... ......+..+...|+++.|...|++++... ...| ....++..++.++.
T Consensus 182 ~~~~~~A~~~~~~al~~~p~~~----~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-----~l~p~~~~~l~~~~~~~~~ 252 (308)
T 2ond_A 182 SKDKSVAFKIFELGLKKYGDIP----EYVLAYIDYLSHLNEDNNTRVLFERVLTSG-----SLPPEKSGEIWARFLAFES 252 (308)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHTTCCHHHHHHHHHHHHHSS-----SSCGGGCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHCCCHHHHHHHHHHHHhcc-----CCCHHHHHHHHHHHHHHHH
Confidence 7999999999999999876532 233444555777899999999999998630 0133 35678889999999
Q ss_pred HcCCHHHHHHHHHHHHHHhhhh
Q psy597 511 KQGKYKEAEILYKQVLTRAHER 532 (546)
Q Consensus 511 ~~g~~~~A~~~~~~al~~~~~~ 532 (546)
..|++++|..+++++++..|+.
T Consensus 253 ~~g~~~~a~~~~~~a~~~~p~~ 274 (308)
T 2ond_A 253 NIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp HHSCHHHHHHHHHHHHHHTTTT
T ss_pred HcCCHHHHHHHHHHHHHHcccc
Confidence 9999999999999999999864
No 82
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.70 E-value=9.6e-16 Score=142.15 Aligned_cols=183 Identities=13% Similarity=0.133 Sum_probs=143.0
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q psy597 293 ATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKE 372 (546)
Q Consensus 293 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 372 (546)
+..++.+|..+...|++++|+..|++++... ++.+....+++.+|.+|...|++++|+..|+++++.. ++
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-----P~ 73 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRY-----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-----PT 73 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cC
Confidence 4568899999999999999999999999874 4456667899999999999999999999999999885 55
Q ss_pred ChHHHHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH------------
Q psy597 373 HPDVAKQLNNLALLCQN------------------QSKYEEVERYYQRALEIYELKLGPDDSNVAKTK------------ 422 (546)
Q Consensus 373 ~~~~~~~~~~la~~~~~------------------~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~------------ 422 (546)
++....+++.+|.++.. .|++++|+..|+++++.+ |+++....++
T Consensus 74 ~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-----P~~~~a~~a~~~l~~~~~~~~~ 148 (225)
T 2yhc_A 74 HPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-----PNSQYTTDATKRLVFLKDRLAK 148 (225)
T ss_dssp CTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-----TTCTTHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-----cCChhHHHHHHHHHHHHHHHHH
Confidence 56667789999999876 578999999999999872 3343333333
Q ss_pred --HHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHH
Q psy597 423 --NNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAK 500 (546)
Q Consensus 423 --~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~ 500 (546)
..+|.+|...|++++|+..|+++++.. ++++....
T Consensus 149 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-------------------------------------------p~~~~~~~ 185 (225)
T 2yhc_A 149 YEYSVAEYYTERGAWVAVVNRVEGMLRDY-------------------------------------------PDTQATRD 185 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHS-------------------------------------------TTSHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHC-------------------------------------------cCCCccHH
Confidence 344555555555555555555555432 33566678
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhc
Q psy597 501 TKNNLASCYLKQGKYKEAEILYKQVLTRAHERE 533 (546)
Q Consensus 501 ~~~~La~~y~~~g~~~~A~~~~~~al~~~~~~~ 533 (546)
++..+|.+|..+|++++|+..++.+....|...
T Consensus 186 a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 186 ALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 999999999999999999999998887655443
No 83
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.69 E-value=3.3e-15 Score=135.45 Aligned_cols=174 Identities=17% Similarity=0.183 Sum_probs=151.1
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChh
Q psy597 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPD 291 (546)
Q Consensus 212 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (546)
+..+.++..+|.++...|++++|+.+|++++..+...+ +.+.
T Consensus 23 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--------------------------------------~~~~ 64 (203)
T 3gw4_A 23 ATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSG--------------------------------------DHTA 64 (203)
T ss_dssp TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC--------------------------------------CHHH
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcC--------------------------------------CcHH
Confidence 46789999999999999999999999999999887654 6678
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHA-AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 370 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 370 (546)
.+.++..+|.+|...|++++|+.++.+++.+.+.. ++.+ ..+.++.++|.++...|++++|+.++++++.+.+..
T Consensus 65 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-- 140 (203)
T 3gw4_A 65 EHRALHQVGMVERMAGNWDAARRCFLEERELLASL--PEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA-- 140 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc--
Confidence 88999999999999999999999999999998865 4334 778899999999999999999999999999987665
Q ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q psy597 371 KEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCY 429 (546)
Q Consensus 371 ~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y 429 (546)
++....+.++.++|.++...|++++|+.++++++++.+.. ++......+..+++.+.
T Consensus 141 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~~~~ 197 (203)
T 3gw4_A 141 DDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAEL--EDSEAVNELMTRLNGLE 197 (203)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTC
T ss_pred cchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHhcccchh
Confidence 4445567788999999999999999999999999998877 44555666666666553
No 84
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.69 E-value=1.1e-15 Score=147.85 Aligned_cols=197 Identities=14% Similarity=0.068 Sum_probs=158.9
Q ss_pred hhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q psy597 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 369 (546)
Q Consensus 290 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 369 (546)
+.....+...+..+...|+|++|+..+.+++...+.. +........+..+|.++...|++++|+.++++++......
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~- 148 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYH--PEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG- 148 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCC--HHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCS-
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCC--hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC-
Confidence 5556677888999999999999999999998864221 1122345667789999999999999999999999875332
Q ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 370 GKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNV-AKTKNNLASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 370 ~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~-~~~~~~La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
.+....+.+++++|.+|...|++++|+.+|++++++++.. ++.+.. ..+++++|.+|..+|++++|+.++++++.+
T Consensus 149 -~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~--~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~ 225 (293)
T 2qfc_A 149 -IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL--HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp -SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--CccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 2334567899999999999999999999999999987765 334433 389999999999999999999999999986
Q ss_pred hhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHH
Q psy597 449 AHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEA-EILYKQVLT 527 (546)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A-~~~~~~al~ 527 (546)
.+.. .+......++.++|.+|..+|++++| ..+|++|+.
T Consensus 226 ~~~~----------------------------------------~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 226 SCRI----------------------------------------NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHT----------------------------------------TBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHhc----------------------------------------CcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 4221 12345678899999999999999999 888999998
Q ss_pred Hhhhh
Q psy597 528 RAHER 532 (546)
Q Consensus 528 ~~~~~ 532 (546)
++...
T Consensus 266 ~~~~~ 270 (293)
T 2qfc_A 266 FFDIL 270 (293)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 87543
No 85
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.69 E-value=1.6e-16 Score=137.33 Aligned_cols=127 Identities=13% Similarity=0.102 Sum_probs=112.2
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHH
Q psy597 298 ILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVA 377 (546)
Q Consensus 298 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 377 (546)
.||.++...|++++|+..+++++.. .|.....++.+|.+|...|+|++|+.+|++++++ +|...
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~--------~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--------~p~~~ 65 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPS--------PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--------QERDP 65 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCS--------HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCH
T ss_pred HhHHHHHHcChHHHHHHHHHHhccc--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCH
Confidence 4788999999999999999999855 5667888999999999999999999999999999 48889
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHh
Q psy597 378 KQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEIL-YKQVLTR 448 (546)
Q Consensus 378 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~-~~~al~~ 448 (546)
.++.++|.+|...|++++|+.+|++++++ +|..+.++.++|.+|...|++++|... +++++++
T Consensus 66 ~a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 66 KAHRFLGLLYELEENTDKAVECYRRSVEL--------NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999 888899999999999999999887665 5888886
No 86
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.69 E-value=7.6e-16 Score=144.96 Aligned_cols=188 Identities=15% Similarity=0.056 Sum_probs=161.3
Q ss_pred hhHHHhhhcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHH
Q psy597 199 SQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKV 278 (546)
Q Consensus 199 ~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~ 278 (546)
.+...+.......|....++..+|.+|...|++++|+.+|+++++.
T Consensus 55 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---------------------------------- 100 (252)
T 2ho1_A 55 QAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALAS---------------------------------- 100 (252)
T ss_dssp GGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------------------
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----------------------------------
Confidence 3444444444445777889999999999999999999999999984
Q ss_pred HHHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q psy597 279 AQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLC 358 (546)
Q Consensus 279 ~~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 358 (546)
.|....++..+|.++...|++++|+.+|++++.. +..|....++..+|.++...|++++|+.+|
T Consensus 101 ----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 164 (252)
T 2ho1_A 101 ----------DSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQD------TLYPERSRVFENLGLVSLQMKKPAQAKEYF 164 (252)
T ss_dssp ----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTC------TTCTTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ----------CcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhC------ccCcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 2444678999999999999999999999999871 346677889999999999999999999999
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHH
Q psy597 359 KRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEA 438 (546)
Q Consensus 359 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA 438 (546)
++++... |....++..+|.++...|++++|+.++++++.. .|....++..++.++...|++++|
T Consensus 165 ~~~~~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A 228 (252)
T 2ho1_A 165 EKSLRLN--------RNQPSVALEMADLLYKEREYVPARQYYDLFAQG--------GGQNARSLLLGIRLAKVFEDRDTA 228 (252)
T ss_dssp HHHHHHC--------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhcC--------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHccCHHHH
Confidence 9999883 566788999999999999999999999999886 566677889999999999999999
Q ss_pred HHHHHHHHHhhhhc
Q psy597 439 EILYKQVLTRAHER 452 (546)
Q Consensus 439 ~~~~~~al~~~~~~ 452 (546)
..++++++...+.+
T Consensus 229 ~~~~~~~~~~~p~~ 242 (252)
T 2ho1_A 229 ASYGLQLKRLYPGS 242 (252)
T ss_dssp HHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHCCCC
Confidence 99999999886543
No 87
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.68 E-value=5.1e-15 Score=128.37 Aligned_cols=158 Identities=18% Similarity=0.178 Sum_probs=142.6
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
+.+..+.++..+|.++...|++++|+.++.+++.+.+.. ++....+.++..+|.++...|++++|+.++++++.+...
T Consensus 4 d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 81 (164)
T 3ro3_A 4 SRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 81 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 556778899999999999999999999999999999887 666777889999999999999999999999999999876
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 368 VLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 447 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~ 447 (546)
. ++.+....++.++|.++...|++++|+.++++++.+.... ++.+....++.++|.+|...|++++|+.++++++.
T Consensus 82 ~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 82 L--KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp T--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred h--CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc--cchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 6 4456678899999999999999999999999999998776 44667788999999999999999999999999998
Q ss_pred hhhh
Q psy597 448 RAHE 451 (546)
Q Consensus 448 ~~~~ 451 (546)
+..+
T Consensus 158 ~~~~ 161 (164)
T 3ro3_A 158 ISRE 161 (164)
T ss_dssp HHTT
T ss_pred HHHH
Confidence 7643
No 88
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.68 E-value=7e-16 Score=141.21 Aligned_cols=184 Identities=15% Similarity=0.134 Sum_probs=141.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHH
Q psy597 215 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVAT 294 (546)
Q Consensus 215 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 294 (546)
+..++..|..++..|+|++|+..|+++++..|.... .++... ..........
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~~~----------------------~~~~~~~~~~ 55 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTE------MYYWTN----------------------VDKNSEISSK 55 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHH------HHHHHH----------------------SCTTSHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChH------HHHHhh----------------------hcchhhhhHH
Confidence 567888999999999999999999999986433220 000000 0112223334
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q psy597 295 MLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHP 374 (546)
Q Consensus 295 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 374 (546)
..+.+|.+|...|++++|+..|++++.+ .|....++.++|.++...|++++|+.+|++++++ +|
T Consensus 56 ~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~P 119 (208)
T 3urz_A 56 LATELALAYKKNRNYDKAYLFYKELLQK--------APNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--------EA 119 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CC
Confidence 4455999999999999999999999998 4555789999999999999999999999999998 48
Q ss_pred HHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 375 DVAKQLNNLALLCQNQSKY--EEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 375 ~~~~~~~~la~~~~~~g~~--~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
....+++++|.+|+..|+. ..+...|.+++. .+....+++++|.++...|++++|+.+|++++.+.|.
T Consensus 120 ~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 120 DNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS---------PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C---------CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC---------CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 8889999999999877643 445566665532 2233456788999999999999999999999998654
No 89
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.68 E-value=2.2e-15 Score=145.68 Aligned_cols=196 Identities=15% Similarity=0.077 Sum_probs=159.3
Q ss_pred hhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy597 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAV---AATLNNLAVLYGKRGKYKEAEPLCKRALEIRE 366 (546)
Q Consensus 290 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 366 (546)
......+...+..+...|++++|...+++++... +..+.. ...+..+|.++...|++++|+.+|++++.+..
T Consensus 72 ~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~ 146 (293)
T 3u3w_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKE-----EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQL 146 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCC
T ss_pred chhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccc-----cCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhc
Confidence 3444556666888999999999999999998753 223332 44566799999999999999999999998642
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy597 367 KVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 446 (546)
Q Consensus 367 ~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al 446 (546)
.. .+....+.+++++|.+|...|++++|+.+|+++++.++... .+.+..+.+++++|.+|..+|++++|+.++++++
T Consensus 147 ~~--~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al 223 (293)
T 3u3w_A 147 TG--IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH-DNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp CC--SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cc--ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 21 33344577899999999999999999999999999887652 3567788899999999999999999999999999
Q ss_pred HhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHH
Q psy597 447 TRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQG-KYKEAEILYKQV 525 (546)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g-~~~~A~~~~~~a 525 (546)
.+.+.. .+.+..+.++.++|.+|..+| .+++|+.+|++|
T Consensus 224 ~~~~~~----------------------------------------~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 224 EISCRI----------------------------------------NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHT----------------------------------------TBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHc----------------------------------------CcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 875432 124566889999999999999 579999999999
Q ss_pred HHHhhhhc
Q psy597 526 LTRAHERE 533 (546)
Q Consensus 526 l~~~~~~~ 533 (546)
+.++...+
T Consensus 264 l~i~~~~~ 271 (293)
T 3u3w_A 264 SFFFDILE 271 (293)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhC
Confidence 99987543
No 90
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.68 E-value=9.2e-17 Score=138.83 Aligned_cols=147 Identities=14% Similarity=0.128 Sum_probs=128.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHHHHH
Q psy597 220 NLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNIL 299 (546)
Q Consensus 220 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l 299 (546)
.||.++...|++++|+..+++++. ..|..+..++.+
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~--------------------------------------------~~p~~~~~~~~l 37 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTP--------------------------------------------SPRQKSIKGFYF 37 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSC--------------------------------------------SHHHHHTTHHHH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcc--------------------------------------------cCcccHHHHHHH
Confidence 478888899999999999998865 567778889999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Q psy597 300 ALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQ 379 (546)
Q Consensus 300 a~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 379 (546)
|.+|...|+|++|+.+|++++.+ .|..+.++..+|.+|...|++++|+.+|++++++ .|....+
T Consensus 38 a~~y~~~~~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~ 101 (150)
T 4ga2_A 38 AKLYYEAKEYDLAKKYICTYINV--------QERDPKAHRFLGLLYELEENTDKAVECYRRSVEL--------NPTQKDL 101 (150)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--------CCCCHHH
Confidence 99999999999999999999998 4555889999999999999999999999999999 4888899
Q ss_pred HHHHHHHHHHcCCHHHHHHH-HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCC
Q psy597 380 LNNLALLCQNQSKYEEVERY-YQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGK 434 (546)
Q Consensus 380 ~~~la~~~~~~g~~~eA~~~-~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~ 434 (546)
+.++|.+|...|++++|... +++++++ +|..+.++...+.++..+|+
T Consensus 102 ~~~la~~~~~~~~~~~aa~~~~~~al~l--------~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 102 VLKIAELLCKNDVTDGRAKYWVERAAKL--------FPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHCSSSSHHHHHHHHHHHH--------STTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHhCc
Confidence 99999999999999887765 5999999 88888899999999988885
No 91
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.67 E-value=7.4e-15 Score=127.34 Aligned_cols=158 Identities=17% Similarity=0.152 Sum_probs=141.8
Q ss_pred CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCC
Q psy597 210 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDH 289 (546)
Q Consensus 210 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 289 (546)
+.+..+.++..+|.++...|++++|+.++.++++..+... +.
T Consensus 4 d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~--------------------------------------~~ 45 (164)
T 3ro3_A 4 SRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG--------------------------------------DK 45 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--------------------------------------CH
T ss_pred cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhC--------------------------------------Cc
Confidence 3456788999999999999999999999999999887654 55
Q ss_pred hhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q psy597 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 369 (546)
Q Consensus 290 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 369 (546)
...+.++..+|.++...|++++|+.++++++.+.+.. ++.+....++.++|.++...|++++|+.++++++.+.+..
T Consensus 46 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~- 122 (164)
T 3ro3_A 46 AAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL- 122 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc-
Confidence 6677899999999999999999999999999999887 6677778899999999999999999999999999998766
Q ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 370 GKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYEL 409 (546)
Q Consensus 370 ~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~ 409 (546)
.+++....++.++|.++...|++++|+.++++++++.+.
T Consensus 123 -~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 123 -KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp -TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred -cchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 445677889999999999999999999999999998643
No 92
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.67 E-value=3.2e-15 Score=142.75 Aligned_cols=195 Identities=17% Similarity=0.196 Sum_probs=165.3
Q ss_pred hhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHH
Q psy597 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGK----RGKYKEAEPLCKRALEIR 365 (546)
Q Consensus 290 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~ 365 (546)
|..+.+++.+|.++...|++++|+.+|+++++. ++ ..+++.+|.+|.. .|++++|+.+|+++++..
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-------~~---~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~ 72 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACDL-------KE---NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN 72 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC
Confidence 445678999999999999999999999999872 12 4679999999999 999999999999998761
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH----cCCHHH
Q psy597 366 EKVLGKEHPDVAKQLNNLALLCQN----QSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK----QGKYKE 437 (546)
Q Consensus 366 ~~~~~~~~~~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~----~g~~~e 437 (546)
...+++++|.+|.. .+++++|+.+|+++++. . .+.++.++|.+|.. .|++++
T Consensus 73 ----------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--------~--~~~a~~~lg~~~~~~~~~~~~~~~ 132 (273)
T 1ouv_A 73 ----------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--------K--YAEGCASLGGIYHDGKVVTRDFKK 132 (273)
T ss_dssp ----------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------T--CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred ----------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--------C--CccHHHHHHHHHHcCCCcccCHHH
Confidence 46788999999999 99999999999999985 2 45789999999999 999999
Q ss_pred HHHHHHHHHHhhhhcccCcccCCChhhHHHHh----hchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH--
Q psy597 438 AEILYKQVLTRAHEREFGACDGDNKPIWQDRQ----KNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK-- 511 (546)
Q Consensus 438 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~-- 511 (546)
|+.+|++++...+ ......++.++.. .+++++|..+|+++++. ....++..+|.+|..
T Consensus 133 A~~~~~~a~~~~~------~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg~~~~~g~ 196 (273)
T 1ouv_A 133 AVEYFTKACDLND------GDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----------KDSPGCFNAGNMYHHGE 196 (273)
T ss_dssp HHHHHHHHHHTTC------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhcCc------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHcCC
Confidence 9999999998531 2234455666776 88999999999999864 124688999999999
Q ss_pred --cCCHHHHHHHHHHHHHHhh
Q psy597 512 --QGKYKEAEILYKQVLTRAH 530 (546)
Q Consensus 512 --~g~~~~A~~~~~~al~~~~ 530 (546)
.+++++|+.+|+++++..+
T Consensus 197 ~~~~~~~~A~~~~~~a~~~~~ 217 (273)
T 1ouv_A 197 GATKNFKEALARYSKACELEN 217 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHTTC
T ss_pred CCCccHHHHHHHHHHHHhCCC
Confidence 9999999999999998754
No 93
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.65 E-value=4.2e-15 Score=151.85 Aligned_cols=243 Identities=12% Similarity=0.072 Sum_probs=189.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHH
Q psy597 217 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATML 296 (546)
Q Consensus 217 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 296 (546)
+....|..+...|+|++|+..|.++++..+............ .........++
T Consensus 6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~al 58 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVD---------------------------DKRRNEQETSI 58 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBC---------------------------SHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHH---------------------------HHHhhhHHHHH
Confidence 455678888999999999999999998644433110000000 00113345678
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHH
Q psy597 297 NILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDV 376 (546)
Q Consensus 297 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 376 (546)
..+|.+|...|++++|.+++.+++.+.... ++......+...++.++...|++++|+.++++++...... .+.+..
T Consensus 59 ~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~ 134 (434)
T 4b4t_Q 59 LELGQLYVTMGAKDKLREFIPHSTEYMMQF--AKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKRE--KRVFLK 134 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTHHHHHTS--CHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHS--SCCSSH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHc--cchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh--CccHHH
Confidence 999999999999999999999999998765 4444556678889999999999999999999999998776 556678
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCc
Q psy597 377 AKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGA 456 (546)
Q Consensus 377 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~ 456 (546)
+.++.++|.+|...|+|++|..++++++...... .+.+....++..+|.+|...|++++|..+|++++.+.+...
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~--- 209 (434)
T 4b4t_Q 135 HSLSIKLATLHYQKKQYKDSLALINDLLREFKKL--DDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIY--- 209 (434)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS--SCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC---
T ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCC---
Confidence 8999999999999999999999999999887655 56788899999999999999999999999999998654321
Q ss_pred ccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q psy597 457 CDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 531 (546)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~ 531 (546)
.........+..+|.++...|++.+|..+|.+++...+.
T Consensus 210 ------------------------------------~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~ 248 (434)
T 4b4t_Q 210 ------------------------------------CPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESYHN 248 (434)
T ss_dssp ------------------------------------CCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHH
T ss_pred ------------------------------------CchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Confidence 011234556667777777777777777777777776544
No 94
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.63 E-value=5.2e-14 Score=146.46 Aligned_cols=258 Identities=15% Similarity=0.153 Sum_probs=193.5
Q ss_pred hHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhh----hhhhHHHHHHHHHHHHhc
Q psy597 212 PARLRTLHNLVIQYAS----QGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRS----RKESYDIVKQAKVAQILG 283 (546)
Q Consensus 212 p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~----~~~~~~~~~~~~~~~~l~ 283 (546)
+.++.+++.+|.+|.. .+++++|+.+|+++.+. +.. .+...+...... ..+...+...+..+..
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-----~~~-~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~-- 107 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ-----GYT-PAEYVLGLRYMNGEGVPQDYAQAVIWYKKAAL-- 107 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----TCH-HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-----CCH-HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH--
Confidence 4457899999999999 99999999999999863 111 122222222211 2233333333333321
Q ss_pred cCCCCChhHHHHHHHHHHHHHH----hhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH----cCCHHHHH
Q psy597 284 SGGHDHPDVATMLNILALVYRD----QNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGK----RGKYKEAE 355 (546)
Q Consensus 284 ~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~----~g~~~~A~ 355 (546)
...+.+++.+|.+|.. .+++++|+.+|+++.+. + ...+++.+|.+|.. .+++++|+
T Consensus 108 ------~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~------~----~~~a~~~Lg~~y~~g~g~~~d~~~A~ 171 (490)
T 2xm6_A 108 ------KGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ------G----RDSGQQSMGDAYFEGDGVTRDYVMAR 171 (490)
T ss_dssp ------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------T----CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred ------CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC------C----CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 1245778899999998 88999999999998764 1 25688999999998 88999999
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q psy597 356 PLCKRALEIREKVLGKEHPDVAKQLNNLALLCQN----QSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK 431 (546)
Q Consensus 356 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~ 431 (546)
.+|+++++. ....++.++|.+|.. .+++++|+.+|+++.+. . .+.++.++|.+|..
T Consensus 172 ~~~~~a~~~----------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--------~--~~~a~~~lg~~y~~ 231 (490)
T 2xm6_A 172 EWYSKAAEQ----------GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--------G--DELGQLHLADMYYF 231 (490)
T ss_dssp HHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------T--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHC----------CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--------C--CHHHHHHHHHHHHc
Confidence 999999864 136788999999998 89999999999999874 1 24578899999997
Q ss_pred ----cCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHh----hchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Q psy597 432 ----QGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQ----KNKAKNREKYYQRALEIYELKLGPDDSNVAKTKN 503 (546)
Q Consensus 432 ----~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~ 503 (546)
.+++++|+.+|++++... .......++.++.. .+++..|..+|+++.+. ....++.
T Consensus 232 g~g~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~----------~~~~a~~ 295 (490)
T 2xm6_A 232 GIGVTQDYTQSRVLFSQSAEQG------NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ----------GNSDGQY 295 (490)
T ss_dssp TSSSCCCHHHHHHHHHHHHTTT------CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT----------TCHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc----------CCHHHHH
Confidence 899999999999998641 22334455555666 77888888888887632 3356889
Q ss_pred HHHHHHHHc-----CCHHHHHHHHHHHHHHh
Q psy597 504 NLASCYLKQ-----GKYKEAEILYKQVLTRA 529 (546)
Q Consensus 504 ~La~~y~~~-----g~~~~A~~~~~~al~~~ 529 (546)
.+|.+|... +++++|+.+|+++.+..
T Consensus 296 ~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~ 326 (490)
T 2xm6_A 296 YLAHLYDKGAEGVAKNREQAISWYTKSAEQG 326 (490)
T ss_dssp HHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC
Confidence 999999998 99999999999998863
No 95
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.62 E-value=3.6e-14 Score=147.75 Aligned_cols=256 Identities=14% Similarity=0.121 Sum_probs=190.4
Q ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhh----hhhhHHHHHHHHHHHHhccC
Q psy597 214 RLRTLHNLVIQYAS----QGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRS----RKESYDIVKQAKVAQILGSG 285 (546)
Q Consensus 214 ~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~----~~~~~~~~~~~~~~~~l~~~ 285 (546)
.+.+++.+|.+|.. .+++++|+.+|+++++. +. ..+...+...... ..+...+...+..+..
T Consensus 146 ~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~-----~~-~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~---- 215 (490)
T 2xm6_A 146 RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ-----GN-VWSCNQLGYMYSRGLGVERNDAISAQWYRKSAT---- 215 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----TC-HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH----
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-----CC-HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHH----
Confidence 45677788888877 77888888888887663 11 1111111111111 1222222222222211
Q ss_pred CCCChhHHHHHHHHHHHHHH----hhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHH
Q psy597 286 GHDHPDVATMLNILALVYRD----QNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGK----RGKYKEAEPL 357 (546)
Q Consensus 286 ~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~----~g~~~~A~~~ 357 (546)
...+.+++.+|.+|.. .+++++|+.+|+++++. . ...+++.+|.+|.. .+++++|+.+
T Consensus 216 ----~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~------~----~~~a~~~lg~~y~~g~~~~~d~~~A~~~ 281 (490)
T 2xm6_A 216 ----SGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ------G----NSIAQFRLGYILEQGLAGAKEPLKALEW 281 (490)
T ss_dssp ----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT------T----CHHHHHHHHHHHHHTTTSSCCHHHHHHH
T ss_pred ----CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC------C----CHHHHHHHHHHHHCCCCCCCCHHHHHHH
Confidence 1234678999999997 88999999999999864 1 15578999999999 9999999999
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc
Q psy597 358 CKRALEIREKVLGKEHPDVAKQLNNLALLCQNQ-----SKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ 432 (546)
Q Consensus 358 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-----g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~ 432 (546)
|+++.+. ....+++.+|.+|... +++++|+.+|+++++. . ...+++++|.+|...
T Consensus 282 ~~~a~~~----------~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--------~--~~~a~~~lg~~y~~~ 341 (490)
T 2xm6_A 282 YRKSAEQ----------GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--------G--DATAQANLGAIYFRL 341 (490)
T ss_dssp HHHHHTT----------TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--------T--CHHHHHHHHHHHHHS
T ss_pred HHHHHHc----------CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--------C--CHHHHHHHHHHHHhC
Confidence 9999754 2345788999999998 9999999999999875 2 235789999999987
Q ss_pred C---CHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHh----hchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q psy597 433 G---KYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQ----KNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNL 505 (546)
Q Consensus 433 g---~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~L 505 (546)
| ++++|+.+|++++... .......++.++.. .+++..|..+|++|.+. ....++.+|
T Consensus 342 g~~~~~~~A~~~~~~a~~~~------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~----------~~~~a~~~L 405 (490)
T 2xm6_A 342 GSEEEHKKAVEWFRKAAAKG------EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ----------GLSAAQVQL 405 (490)
T ss_dssp CCHHHHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC----------CCHHHHHHH
Confidence 7 8999999999998751 22345566777777 78999999999998863 136788999
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHHHh
Q psy597 506 ASCYLK----QGKYKEAEILYKQVLTRA 529 (546)
Q Consensus 506 a~~y~~----~g~~~~A~~~~~~al~~~ 529 (546)
|.+|.. .+++++|..+|++|++..
T Consensus 406 g~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 406 GEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 999999 899999999999999987
No 96
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=99.61 E-value=1.7e-14 Score=145.76 Aligned_cols=122 Identities=11% Similarity=0.081 Sum_probs=118.4
Q ss_pred HhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q psy597 305 DQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLA 384 (546)
Q Consensus 305 ~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 384 (546)
..|+|++|+..+++++.+..+.+|+++|.++.+++++|.+|..+|+|++|+.++++++++.++.+|++||..+..+++||
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q psy597 385 LLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLA 426 (546)
Q Consensus 385 ~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La 426 (546)
.+|..+|++++|+.+|++|+++.+..+|+++|....+..+|.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence 999999999999999999999999999999999999888775
No 97
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.60 E-value=1.3e-14 Score=121.19 Aligned_cols=118 Identities=18% Similarity=0.255 Sum_probs=109.7
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
-+|..+..+..+|..|+..|+|++|+..|++++.+ .|....++.++|.+|..+|++++|+..|++++++
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--- 76 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--------DPENAILYSNRAACLTKLMEFQRALDDCDTCIRL--- 76 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh---
Confidence 57999999999999999999999999999999988 4555789999999999999999999999999998
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q psy597 368 VLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCY 429 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y 429 (546)
+|....++.++|.++..+|++++|+.+|++++++ +|....++.+|+.++
T Consensus 77 -----~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l--------~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 77 -----DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQV--------DPSNEEAREGVRNCL 125 (126)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHC
T ss_pred -----hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------CcCCHHHHHHHHHhc
Confidence 4778899999999999999999999999999999 888888999888764
No 98
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.59 E-value=7.9e-15 Score=142.91 Aligned_cols=220 Identities=10% Similarity=0.031 Sum_probs=168.6
Q ss_pred HHhhhcCCCchHHHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhh
Q psy597 202 AQQVNAGYEIPARLRTLHNLVIQYAS-------QGRY-------EVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRK 267 (546)
Q Consensus 202 ~~~~~~~~~~p~~~~~~~~lg~~~~~-------~g~~-------~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~ 267 (546)
..........|..+.+|+.+|..+.. .|++ ++|+..|++|++.
T Consensus 37 ~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~----------------------- 93 (308)
T 2ond_A 37 FAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST----------------------- 93 (308)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-----------------------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-----------------------
Confidence 34445555578889999999998874 5886 8999999998861
Q ss_pred hhHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy597 268 ESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGK 347 (546)
Q Consensus 268 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~ 347 (546)
..|....+|..+|.++...|++++|...|++++.+. +..+. .+|..+|.++..
T Consensus 94 --------------------~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-----p~~~~--~~~~~~~~~~~~ 146 (308)
T 2ond_A 94 --------------------LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-----DIDPT--LVYIQYMKFARR 146 (308)
T ss_dssp --------------------TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS-----SSCTH--HHHHHHHHHHHH
T ss_pred --------------------hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-----ccCcc--HHHHHHHHHHHH
Confidence 145667789999999999999999999999999862 22221 279999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q psy597 348 RGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQN-QSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLA 426 (546)
Q Consensus 348 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La 426 (546)
.|++++|+..|+++++.. |....++...+.+... .|++++|+.+|+++++. .|..+.++.++|
T Consensus 147 ~~~~~~A~~~~~~a~~~~--------p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~ 210 (308)
T 2ond_A 147 AEGIKSGRMIFKKAREDA--------RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--------YGDIPEYVLAYI 210 (308)
T ss_dssp HHCHHHHHHHHHHHHTST--------TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--------HTTCHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHH
Confidence 999999999999999863 3345556666665443 79999999999999998 566778899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHH
Q psy597 427 SCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIY 487 (546)
Q Consensus 427 ~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~ 487 (546)
.++...|++++|..+|++++...+-.+..........+......|+.+.|...+.++++.+
T Consensus 211 ~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 211 DYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 9999999999999999999985210000011122233444667899999999999998873
No 99
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=99.59 E-value=2.2e-14 Score=145.31 Aligned_cols=133 Identities=14% Similarity=0.124 Sum_probs=127.1
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Q psy597 300 ALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQ 379 (546)
Q Consensus 300 a~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 379 (546)
..-+..+|+|++|+..+++++++..+.+|+++|..+.++.++|.+|..+|+|++|+.++++++.+.++.+|++||..+..
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc
Q psy597 380 LNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ 432 (546)
Q Consensus 380 ~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~ 432 (546)
+++||.+|..+|++++|+.+|++|+++.+..+|+++|....++.+|+.+...+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988654
No 100
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.59 E-value=2.4e-14 Score=119.45 Aligned_cols=104 Identities=19% Similarity=0.239 Sum_probs=98.7
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy597 331 HAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELK 410 (546)
Q Consensus 331 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~ 410 (546)
+|..+..+.++|..|+..|+|++|+.+|++++++ .|....++.++|.+|..+|++++|+..|++++++
T Consensus 9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---- 76 (126)
T 4gco_A 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--------DPENAILYSNRAACLTKLMEFQRALDDCDTCIRL---- 76 (126)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh----
Confidence 6888999999999999999999999999999998 4888899999999999999999999999999999
Q ss_pred cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q psy597 411 LGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAH 450 (546)
Q Consensus 411 ~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~ 450 (546)
+|....++.++|.+|..+|++++|+..|++++++.|
T Consensus 77 ----~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P 112 (126)
T 4gco_A 77 ----DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDP 112 (126)
T ss_dssp ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred ----hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCc
Confidence 888899999999999999999999999999999743
No 101
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.56 E-value=3.6e-14 Score=136.68 Aligned_cols=169 Identities=17% Similarity=0.091 Sum_probs=151.2
Q ss_pred hhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q psy597 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 369 (546)
Q Consensus 290 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 369 (546)
|.....+..+|..+...|++++|+..|++++.. .|....++..+|.++...|++++|+..+++++...
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~---- 181 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL--------SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD---- 181 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG----
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--------CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh----
Confidence 566778999999999999999999999999998 45557889999999999999999999999998774
Q ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q psy597 370 GKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRA 449 (546)
Q Consensus 370 ~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~ 449 (546)
|.........+..+...++.++|+..|++++.. +|....+++++|.+|...|++++|+..|.+++..
T Consensus 182 ----p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~--------~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~- 248 (287)
T 3qou_A 182 ----QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAE--------NPEDAALATQLALQLHQVGRNEEALELLFGHLRX- 248 (287)
T ss_dssp ----CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred ----cchHHHHHHHHHHHHhhcccCccHHHHHHHHhc--------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc-
Confidence 556677777888888999999999999999999 8889999999999999999999999999999986
Q ss_pred hhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 450 HEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNV--AKTKNNLASCYLKQGKYKEAEILYKQVLT 527 (546)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~--~~~~~~La~~y~~~g~~~~A~~~~~~al~ 527 (546)
+|.. ..++..++.++...|+.++|...|++++.
T Consensus 249 ---------------------------------------------~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 249 ---------------------------------------------DLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp ---------------------------------------------CTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ---------------------------------------------ccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 3333 67888999999999999999999999987
Q ss_pred H
Q psy597 528 R 528 (546)
Q Consensus 528 ~ 528 (546)
.
T Consensus 284 ~ 284 (287)
T 3qou_A 284 A 284 (287)
T ss_dssp H
T ss_pred H
Confidence 5
No 102
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.56 E-value=4.6e-15 Score=160.45 Aligned_cols=173 Identities=13% Similarity=0.022 Sum_probs=148.5
Q ss_pred CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCC
Q psy597 209 YEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHD 288 (546)
Q Consensus 209 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 288 (546)
..+|....+++.+|.+|...|++++|+..|+++++.
T Consensus 427 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-------------------------------------------- 462 (681)
T 2pzi_A 427 VDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER-------------------------------------------- 462 (681)
T ss_dssp -CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------------------------------------------
T ss_pred cccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--------------------------------------------
Confidence 667888999999999999999999999999999984
Q ss_pred ChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy597 289 HPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 368 (546)
Q Consensus 289 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 368 (546)
.|....+++.+|.+|...|++++|+..|++++.+ .|....+++++|.++...|++++ +.+|++++++
T Consensus 463 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~---- 529 (681)
T 2pzi_A 463 VGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDT--------FPGELAPKLALAATAELAGNTDE-HKFYQTVWST---- 529 (681)
T ss_dssp HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH----
T ss_pred CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh----
Confidence 3556788999999999999999999999999998 45557889999999999999999 9999999998
Q ss_pred cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHH
Q psy597 369 LGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEA-EILYKQVLT 447 (546)
Q Consensus 369 ~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA-~~~~~~al~ 447 (546)
+|....+++++|.++...|++++|+..|++++++ +|....++.++|.++...|+.+++ ...+++++.
T Consensus 530 ----~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~ 597 (681)
T 2pzi_A 530 ----NDGVISAAFGLARARSAEGDRVGAVRTLDEVPPT--------SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAAR 597 (681)
T ss_dssp ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT--------STTHHHHHHHHHHHTC-------CCHHHHHHHHH
T ss_pred ----CCchHHHHHHHHHHHHHcCCHHHHHHHHHhhccc--------CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHH
Confidence 4888889999999999999999999999999998 899999999999999887775555 556666665
Q ss_pred hhh
Q psy597 448 RAH 450 (546)
Q Consensus 448 ~~~ 450 (546)
...
T Consensus 598 ~l~ 600 (681)
T 2pzi_A 598 RVE 600 (681)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
No 103
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.56 E-value=8.7e-15 Score=130.01 Aligned_cols=167 Identities=14% Similarity=0.030 Sum_probs=137.0
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q psy597 293 ATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKE 372 (546)
Q Consensus 293 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 372 (546)
...+..+|..+...|++++|+..|++++... |....++..+|.++...|++++|+..|++++...
T Consensus 6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--------P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~------- 70 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDEL--------QSRGDVKLAKADCLLETKQFELAQELLATIPLEY------- 70 (176)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHH--------HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG-------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc-------
Confidence 3457888999999999999999999999884 5558899999999999999999999999998764
Q ss_pred ChHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 373 HPDVAKQLNNLALLC-QNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 373 ~~~~~~~~~~la~~~-~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
| .......++.+. ...+...+|+..|+++++. +|....+++++|.++...|++++|+..|++++...|.
T Consensus 71 -p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 140 (176)
T 2r5s_A 71 -Q-DNSYKSLIAKLELHQQAAESPELKRLEQELAA--------NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLG 140 (176)
T ss_dssp -C-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred -C-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc
Confidence 3 233334444332 2334455689999999998 8888899999999999999999999999999886321
Q ss_pred cccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 452 REFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 528 (546)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~ 528 (546)
+....++..+|.++...|++++|...|++++..
T Consensus 141 --------------------------------------------~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 141 --------------------------------------------AQDGEVKKTFMDILSALGQGNAIASKYRRQLYS 173 (176)
T ss_dssp --------------------------------------------TTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred --------------------------------------------cChHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 122457889999999999999999999999875
No 104
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.55 E-value=3.2e-14 Score=137.02 Aligned_cols=169 Identities=15% Similarity=0.100 Sum_probs=152.0
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChh
Q psy597 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPD 291 (546)
Q Consensus 212 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (546)
|.....++.+|..+...|++++|+..|+++++. .|.
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------------------------------------------~P~ 149 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL--------------------------------------------SNQ 149 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------------------------TTS
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--------------------------------------------CCc
Confidence 677889999999999999999999999999984 466
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 371 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 371 (546)
...+++.+|.++...|++++|+..+++++... |.........+..+...++.++|+..+++++..
T Consensus 150 ~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--------p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~------- 214 (287)
T 3qou_A 150 NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--------QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAE------- 214 (287)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--------CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH-------
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--------cchHHHHHHHHHHHHhhcccCccHHHHHHHHhc-------
Confidence 67889999999999999999999999998762 333556677778888999999999999999998
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 372 EHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNV--AKTKNNLASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 372 ~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~--~~~~~~La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
+|....+++++|.++...|++++|+..|.+++.. +|.. ..++.+++.++...|+.++|...|++++..
T Consensus 215 -~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~--------~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 215 -NPEDAALATQLALQLHQVGRNEEALELLFGHLRX--------DLTAADGQTRXTFQEILAALGTGDALASXYRRQLYA 284 (287)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred -CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--------ccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 4888999999999999999999999999999998 6666 889999999999999999999999999874
No 105
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.55 E-value=6.1e-15 Score=131.01 Aligned_cols=167 Identities=14% Similarity=0.099 Sum_probs=137.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhH
Q psy597 213 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDV 292 (546)
Q Consensus 213 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 292 (546)
.....++.+|..+...|++++|+..|+++++. .|..
T Consensus 4 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------------------------------------------~P~~ 39 (176)
T 2r5s_A 4 SPDEQLLKQVSELLQQGEHAQALNVIQTLSDE--------------------------------------------LQSR 39 (176)
T ss_dssp --CTTHHHHHHHHHHTTCHHHHHHHHHTSCHH--------------------------------------------HHTS
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------------------------------------------CCCc
Confidence 33456888999999999999999999999884 4666
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 293 ATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLY-GKRGKYKEAEPLCKRALEIREKVLGK 371 (546)
Q Consensus 293 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~ 371 (546)
+.+++.+|.++...|++++|+..|++++... + ++ ..+..++.+. ...+....|+..++++++.
T Consensus 40 ~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~-----p-~~---~~~~~~~~~~~~~~~~~~~a~~~~~~al~~------- 103 (176)
T 2r5s_A 40 GDVKLAKADCLLETKQFELAQELLATIPLEY-----Q-DN---SYKSLIAKLELHQQAAESPELKRLEQELAA------- 103 (176)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG-----C-CH---HHHHHHHHHHHHHHHTSCHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc-----C-Ch---HHHHHHHHHHHHhhcccchHHHHHHHHHHh-------
Confidence 7889999999999999999999999998763 2 23 2333344332 2333445689999999988
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 372 EHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNV--AKTKNNLASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 372 ~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~--~~~~~~La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
.|....+++++|.++...|++++|+.+|+++++. +|.. ..++.++|.++..+|++++|+..|++++..
T Consensus 104 -~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 104 -NPDNFELACELAVQYNQVGRDEEALELLWNILKV--------NLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLYS 173 (176)
T ss_dssp -STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred -CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------CcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 4888899999999999999999999999999987 5543 568999999999999999999999999874
No 106
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.55 E-value=1.7e-13 Score=125.60 Aligned_cols=165 Identities=15% Similarity=0.075 Sum_probs=137.2
Q ss_pred hHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHH
Q psy597 291 DVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRG----KYKEAEPLCKRALEIRE 366 (546)
Q Consensus 291 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~~ 366 (546)
..+.+++.+|.+|...+++++|+.+|+++++. . .+.+++++|.+|.. + ++++|+.+|+++.+.
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~------g----~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~-- 82 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ------G----DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA-- 82 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT------T----CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT--
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc------C----CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC--
Confidence 34678999999999999999999999999864 1 25789999999998 7 999999999999643
Q ss_pred HhcCCCChHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH----cCCHHHH
Q psy597 367 KVLGKEHPDVAKQLNNLALLCQN----QSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK----QGKYKEA 438 (546)
Q Consensus 367 ~~~~~~~~~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~----~g~~~eA 438 (546)
..+.++++||.+|.. .+++++|+.+|+++++. .+....+.++++||.+|.. .+++++|
T Consensus 83 --------g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~------~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A 148 (212)
T 3rjv_A 83 --------GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD------SESDAAVDAQMLLGLIYASGVHGPEDDVKA 148 (212)
T ss_dssp --------TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS------TTSHHHHHHHHHHHHHHHHTSSSSCCHHHH
T ss_pred --------CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc------CCCcchHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 356788999999998 89999999999999986 2122568899999999999 8899999
Q ss_pred HHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHc-C----
Q psy597 439 EILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ-G---- 513 (546)
Q Consensus 439 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~-g---- 513 (546)
+.+|+++... +....++++||.+|... |
T Consensus 149 ~~~~~~A~~~-----------------------------------------------~~~~~a~~~Lg~~y~~g~gg~~~ 181 (212)
T 3rjv_A 149 SEYFKGSSSL-----------------------------------------------SRTGYAEYWAGMMFQQGEKGFIE 181 (212)
T ss_dssp HHHHHHHHHT-----------------------------------------------SCTTHHHHHHHHHHHHCBTTTBC
T ss_pred HHHHHHHHHc-----------------------------------------------CCCHHHHHHHHHHHHcCCCCCCC
Confidence 9999998864 11223678889988764 3
Q ss_pred -CHHHHHHHHHHHHHHh
Q psy597 514 -KYKEAEILYKQVLTRA 529 (546)
Q Consensus 514 -~~~~A~~~~~~al~~~ 529 (546)
++++|+.+|+++.+..
T Consensus 182 ~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 182 PNKQKALHWLNVSCLEG 198 (212)
T ss_dssp CCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 8999999999998764
No 107
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=99.55 E-value=1.5e-13 Score=138.94 Aligned_cols=123 Identities=16% Similarity=0.141 Sum_probs=117.1
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHH
Q psy597 226 ASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRD 305 (546)
Q Consensus 226 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~ 305 (546)
...|+|++|+.+|++++++..+.. ++++|..+.++.++|.+|..
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~l------------------------------------g~~Hp~~a~~~~nLa~~y~~ 352 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVF------------------------------------EDSNVYMLHMMYQAMGVCLY 352 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTB------------------------------------CTTSHHHHHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHhhCcc------------------------------------ChhchHHHHHHHHHHHHHHh
Confidence 346889999999999999888877 88999999999999999999
Q ss_pred hhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q psy597 306 QNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLA 384 (546)
Q Consensus 306 ~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 384 (546)
+|+|++|+.++++++.+.++.+|+++|.++..+++||.+|..+|+|++|+.+|++|+++.+..+|++||.+..+..+|.
T Consensus 353 ~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 353 MQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431 (433)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999888764
No 108
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.55 E-value=1.1e-14 Score=125.35 Aligned_cols=105 Identities=14% Similarity=0.188 Sum_probs=99.7
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy597 331 HAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELK 410 (546)
Q Consensus 331 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~ 410 (546)
+|....+++.+|.++...|++++|+.+|++++.+ +|..+.+|.++|.++...|++++|+.+|++++.+
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l---- 99 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--------DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL---- 99 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh----
Confidence 6888999999999999999999999999999999 4888999999999999999999999999999999
Q ss_pred cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 411 LGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 411 ~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
+|..+.+++++|.+|..+|++++|+..|++++.+.++
T Consensus 100 ----~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 100 ----GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp ----SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred ----CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 8888899999999999999999999999999998654
No 109
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.53 E-value=1.8e-12 Score=132.21 Aligned_cols=197 Identities=11% Similarity=0.070 Sum_probs=169.9
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChh
Q psy597 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPD 291 (546)
Q Consensus 212 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (546)
+....++..+|.+|...|++++|+.++.+++...+... ....
T Consensus 52 ~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~--------------------------------------~~~~ 93 (434)
T 4b4t_Q 52 NEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA--------------------------------------KSKT 93 (434)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC--------------------------------------HHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc--------------------------------------chHH
Confidence 34456789999999999999999999999998776543 2344
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 371 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 371 (546)
...+...+|.++...|+++.|+.++.+++...... .+.+..+.++.++|.+|...|+|.+|..++.+++...... .
T Consensus 94 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~--~ 169 (434)
T 4b4t_Q 94 VKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKRE--KRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKL--D 169 (434)
T ss_dssp HHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHS--SCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS--S
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh--CccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhc--c
Confidence 55677888999999999999999999999998887 6667778999999999999999999999999999887655 5
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q psy597 372 EHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDD-SNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAH 450 (546)
Q Consensus 372 ~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~-~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~ 450 (546)
+.+....++..+|.+|...|++++|..+|++++.+.... +++ ......+..+|.++...|+|++|..+|.+++....
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~ 247 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSI--YCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESYH 247 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcC--CCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Confidence 668889999999999999999999999999999987765 223 34577889999999999999999999999998765
Q ss_pred hc
Q psy597 451 ER 452 (546)
Q Consensus 451 ~~ 452 (546)
..
T Consensus 248 ~~ 249 (434)
T 4b4t_Q 248 NL 249 (434)
T ss_dssp HT
T ss_pred hh
Confidence 43
No 110
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.53 E-value=1.1e-14 Score=125.32 Aligned_cols=107 Identities=17% Similarity=0.211 Sum_probs=99.7
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhc
Q psy597 373 HPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 452 (546)
Q Consensus 373 ~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~ 452 (546)
+|....+++++|.++...|++++|+.+|++++.+ +|..+.++.++|.+|..+|++++|+..|++++.+
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l---- 99 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--------DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL---- 99 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh----
Confidence 5999999999999999999999999999999999 8999999999999999999999999999999986
Q ss_pred ccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Q psy597 453 EFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 532 (546)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~~ 532 (546)
.|..+.+++++|.+|..+|++++|+.+|++++++.|+.
T Consensus 100 ------------------------------------------~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 100 ------------------------------------------GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp ------------------------------------------SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred ------------------------------------------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 45556789999999999999999999999999998765
Q ss_pred c
Q psy597 533 E 533 (546)
Q Consensus 533 ~ 533 (546)
+
T Consensus 138 ~ 138 (151)
T 3gyz_A 138 K 138 (151)
T ss_dssp H
T ss_pred H
Confidence 4
No 111
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=99.53 E-value=1.9e-13 Score=138.35 Aligned_cols=138 Identities=12% Similarity=0.077 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHH
Q psy597 217 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATML 296 (546)
Q Consensus 217 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 296 (546)
........+..+|+|++|+..|++++++..+.. ++++|..+.++
T Consensus 289 ~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~l------------------------------------g~~h~~~~~~~ 332 (429)
T 3qwp_A 289 ESLKKIEELKAHWKWEQVLAMCQAIISSNSERL------------------------------------PDINIYQLKVL 332 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCC------------------------------------CTTSHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhccCcC------------------------------------CccchHHHHHH
Confidence 344445567788999999999999998766665 77999999999
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHH
Q psy597 297 NILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDV 376 (546)
Q Consensus 297 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 376 (546)
.++|.+|..+|+|++|+.++++++.++++.+|+++|.++..+++||.+|..+|++++|+.+|++|+++.+..+|++||.+
T Consensus 333 ~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 412 (429)
T 3qwp_A 333 DCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLI 412 (429)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHH
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHc
Q psy597 377 AKQLNNLALLCQNQ 390 (546)
Q Consensus 377 ~~~~~~la~~~~~~ 390 (546)
..++.+|+.+....
T Consensus 413 ~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 413 EDLILLLEECDANI 426 (429)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887653
No 112
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.52 E-value=2.2e-14 Score=141.49 Aligned_cols=167 Identities=20% Similarity=0.206 Sum_probs=139.1
Q ss_pred HhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC-------CChHHH
Q psy597 305 DQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK-------EHPDVA 377 (546)
Q Consensus 305 ~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------~~~~~~ 377 (546)
..+++++|+..|.+++.. .|..+.++..+|.++...|+|++|+.+|++++.+....... ..+...
T Consensus 125 ~L~~~~~A~~~~~~a~~~--------~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~ 196 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEE--------KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRL 196 (336)
T ss_dssp EEEEEECCCCGGGCCHHH--------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHH--------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHH
Confidence 456778888888888776 46668899999999999999999999999999985111000 001226
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcc
Q psy597 378 KQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGAC 457 (546)
Q Consensus 378 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~ 457 (546)
.++.++|.+|...|++++|+.+|++++++ +|....+++++|.+|..+|++++|+..|++++.+
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------- 259 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALEL--------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--------- 259 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---------
Confidence 89999999999999999999999999999 7888999999999999999999999999999986
Q ss_pred cCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHhhhhc
Q psy597 458 DGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEA-EILYKQVLTRAHERE 533 (546)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A-~~~~~~al~~~~~~~ 533 (546)
.|....++..++.++...|++++| ...|++++......+
T Consensus 260 -------------------------------------~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 299 (336)
T 1p5q_A 260 -------------------------------------YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLAEEE 299 (336)
T ss_dssp -------------------------------------CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------------------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 455567888999999999999998 568888887665543
No 113
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.52 E-value=1e-13 Score=147.03 Aligned_cols=153 Identities=15% Similarity=0.050 Sum_probs=107.3
Q ss_pred hhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q psy597 306 QNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLAL 385 (546)
Q Consensus 306 ~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 385 (546)
.|++++|+..|++++... |....++..+|.++...|++++|+.+|++++++ .|....++.++|.
T Consensus 2 ~g~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~ 65 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR--------PQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--------HPGHPEAVARLGR 65 (568)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--------STTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Confidence 478999999999999873 444788999999999999999999999999987 3777889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhH
Q psy597 386 LCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIW 465 (546)
Q Consensus 386 ~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~ 465 (546)
+|...|++++|+.+|++++++ +|....++.++|.+|...|++++|+.+|+++++..+... ......+.
T Consensus 66 ~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~l~~ 133 (568)
T 2vsy_A 66 VRWTQQRHAEAAVLLQQASDA--------APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEP----YITAQLLN 133 (568)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHH
Confidence 999999999999999999998 777888999999999999999999999999998743221 11222333
Q ss_pred HHHhh---chhhHHHHHHHHHHHH
Q psy597 466 QDRQK---NKAKNREKYYQRALEI 486 (546)
Q Consensus 466 ~~~~~---~~~~~A~~~~~~Al~~ 486 (546)
++... |++++|...|+++++.
T Consensus 134 ~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 134 WRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhhccccHHHHHHHHHHHHhc
Confidence 34444 4455555555554443
No 114
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.51 E-value=1.4e-13 Score=146.04 Aligned_cols=156 Identities=12% Similarity=0.067 Sum_probs=126.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHhh
Q psy597 228 QGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQN 307 (546)
Q Consensus 228 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~g 307 (546)
.|++++|+..|+++++. .|....+++.+|.++...|
T Consensus 2 ~g~~~~A~~~~~~al~~--------------------------------------------~p~~~~~~~~lg~~~~~~g 37 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--------------------------------------------RPQDFVAWLMLADAELGMG 37 (568)
T ss_dssp ---------------------------------------------------------------CCHHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHHh--------------------------------------------CCCCHHHHHHHHHHHHHcC
Confidence 47889999999999873 4556778999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q psy597 308 KYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLC 387 (546)
Q Consensus 308 ~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 387 (546)
++++|+.+|++++++ .|....++.++|.+|...|++++|+.+|+++++. .|....++.++|.++
T Consensus 38 ~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~ 101 (568)
T 2vsy_A 38 DTTAGEMAVQRGLAL--------HPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDA--------APEHPGIALWLGHAL 101 (568)
T ss_dssp CHHHHHHHHHHHHTT--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHH
Confidence 999999999999987 4555788999999999999999999999999998 377788999999999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhhhh
Q psy597 388 QNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ---GKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 388 ~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~---g~~~eA~~~~~~al~~~~~ 451 (546)
...|++++|+.+|++++++ .|....++.++|.++..+ |++++|...|++++...+.
T Consensus 102 ~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 160 (568)
T 2vsy_A 102 EDAGQAEAAAAAYTRAHQL--------LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVG 160 (568)
T ss_dssp HHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCC
T ss_pred HHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCc
Confidence 9999999999999999998 777788999999999999 9999999999999998654
No 115
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.50 E-value=2.9e-13 Score=142.34 Aligned_cols=169 Identities=15% Similarity=0.141 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHH-HHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHH
Q psy597 334 VAATLNNLAVLYGK-------RGKYK-------EAEPLCKRALE-IREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVER 398 (546)
Q Consensus 334 ~~~~~~~la~~~~~-------~g~~~-------~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~ 398 (546)
...+|..+|..+.. .|+++ +|+..|++++. + .|....++..+|.++...|++++|..
T Consensus 271 ~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~--------~p~~~~l~~~~~~~~~~~g~~~~A~~ 342 (530)
T 2ooe_A 271 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL--------LKKNMLLYFAYADYEESRMKYEKVHS 342 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTT--------CSSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHhcCCHHHHHH
Confidence 35678888888876 79987 88888888886 4 37778899999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCChHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHH-HHhhchhhHH
Q psy597 399 YYQRALEIYELKLGPDDSNV-AKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQ-DRQKNKAKNR 476 (546)
Q Consensus 399 ~~~~al~~~~~~~~~~~~~~-~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~A 476 (546)
.|++++++ .|.. ..+|.++|.++...|++++|...|++++...+.. .......++. +...|+.+.|
T Consensus 343 ~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~----~~~~~~~a~~~~~~~~~~~~A 410 (530)
T 2ooe_A 343 IYNRLLAI--------EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR----HHVYVTAALMEYYCSKDKSVA 410 (530)
T ss_dssp HHHHHHHS--------SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCC----THHHHHHHHHHHHHTCCHHHH
T ss_pred HHHHHhCc--------cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCc----hHHHHHHHHHHHHHcCChhHH
Confidence 99999987 4433 3589999999999999999999999999863321 1111111222 3357899999
Q ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q psy597 477 EKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAH 530 (546)
Q Consensus 477 ~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~ 530 (546)
...|+++++. .|....++..++.++...|++++|..+|++++...+
T Consensus 411 ~~~~e~al~~--------~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~ 456 (530)
T 2ooe_A 411 FKIFELGLKK--------YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 456 (530)
T ss_dssp HHHHHHHHHH--------HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHH--------CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccC
Confidence 9999999987 455577889999999999999999999999998643
No 116
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.50 E-value=1.7e-13 Score=128.88 Aligned_cols=214 Identities=15% Similarity=0.060 Sum_probs=175.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhH
Q psy597 213 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDV 292 (546)
Q Consensus 213 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 292 (546)
+....++..|.-+ ..+++..|...|.++++. +|..
T Consensus 5 ~~~~~~~~~~~~~-~~~d~~~A~~~F~~a~~~--------------------------------------------dP~~ 39 (282)
T 4f3v_A 5 DRLASLFESAVSM-LPMSEARSLDLFTEITNY--------------------------------------------DESA 39 (282)
T ss_dssp HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHH--------------------------------------------CTTC
T ss_pred HHHHHHHHHHhcc-cCCCHHHHHHHHHHHHHh--------------------------------------------Chhh
Confidence 3456677777776 689999999999999984 6888
Q ss_pred HHHHHHH-------HHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCH-------------HHHHHHHHHHHHHHHcCCHH
Q psy597 293 ATMLNIL-------ALVYRDQNKYKEAANLLNDALTIREKTLGENHA-------------AVAATLNNLAVLYGKRGKYK 352 (546)
Q Consensus 293 ~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~-------------~~~~~~~~la~~~~~~g~~~ 352 (546)
+.+|..+ +.++...+++.+++..+.+++.+.+..++.... ....+...++.++...|+|+
T Consensus 40 ~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~ 119 (282)
T 4f3v_A 40 CDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYA 119 (282)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHH
T ss_pred hHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHH
Confidence 8999999 899999999999999999999876554332111 12456677899999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHHHH
Q psy597 353 EAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSN-VAKTKNNLASCYLK 431 (546)
Q Consensus 353 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~-~~~~~~~La~~y~~ 431 (546)
+|...|..++.. .|... ..+.+|.++...+++++|+.+|+++... + ++. ...+++++|.++..
T Consensus 120 eA~~~l~~~~~~--------~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~------~-d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 120 DAMEALEAAPVA--------GSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKW------P-DKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHTSSCCT--------TCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGC------S-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc--------CCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhcc------C-CcccHHHHHHHHHHHHHH
Confidence 999999988764 36666 8999999999999999999999977554 2 333 35689999999999
Q ss_pred cCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHHH
Q psy597 432 QGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSN-VAKTKNNLASCYL 510 (546)
Q Consensus 432 ~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~-~~~~~~~La~~y~ 510 (546)
+|++++|+.+|++++.. +..|. ...+.+.+|.++.
T Consensus 184 LG~~~eAl~~l~~a~~g--------------------------------------------~~~P~~~~da~~~~glaL~ 219 (282)
T 4f3v_A 184 LALFTEAERRLTEANDS--------------------------------------------PAGEACARAIAWYLAMARR 219 (282)
T ss_dssp TTCHHHHHHHHHHHHTS--------------------------------------------TTTTTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcC--------------------------------------------CCCccccHHHHHHHHHHHH
Confidence 99999999999998742 11144 6678899999999
Q ss_pred HcCCHHHHHHHHHHHHHHhhh
Q psy597 511 KQGKYKEAEILYKQVLTRAHE 531 (546)
Q Consensus 511 ~~g~~~~A~~~~~~al~~~~~ 531 (546)
.+|+.++|...|++++...|+
T Consensus 220 ~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 220 SQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHTCHHHHHHHHHHHHHHSCC
T ss_pred HcCCHHHHHHHHHHHHhcCCc
Confidence 999999999999999998776
No 117
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.49 E-value=5.1e-13 Score=111.52 Aligned_cols=111 Identities=21% Similarity=0.307 Sum_probs=99.0
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcc
Q psy597 374 PDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHERE 453 (546)
Q Consensus 374 ~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~ 453 (546)
++.+.++.++|..++..|+|++|+.+|++|+++ +|..+.++.++|.+|..+|++++|+..|++++.+.+...
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--------~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~ 76 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL--------DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETR 76 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccc
Confidence 667889999999999999999999999999999 888899999999999999999999999999999865432
Q ss_pred cCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q psy597 454 FGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 531 (546)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~ 531 (546)
...+..+.++.++|.+|..+|++++|+.+|++++...|+
T Consensus 77 ---------------------------------------~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 77 ---------------------------------------ADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp ---------------------------------------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred ---------------------------------------hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 113456778999999999999999999999999997654
No 118
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.49 E-value=5.1e-14 Score=138.84 Aligned_cols=146 Identities=22% Similarity=0.244 Sum_probs=127.0
Q ss_pred ChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCC-------CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy597 289 HPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGE-------NHAAVAATLNNLAVLYGKRGKYKEAEPLCKRA 361 (546)
Q Consensus 289 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~-------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 361 (546)
.|..+.++..+|.+++..|++++|+..|++++.+.+..... ..+....++.++|.+|...|++++|+.+|+++
T Consensus 143 ~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 222 (336)
T 1p5q_A 143 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA 222 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 46778899999999999999999999999999985332000 01334689999999999999999999999999
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHH-HH
Q psy597 362 LEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEA-EI 440 (546)
Q Consensus 362 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA-~~ 440 (546)
+++ .|....+++++|.+|...|++++|+.+|++++++ +|....++.+++.++..+|++++| ..
T Consensus 223 l~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P~~~~a~~~l~~~~~~~~~~~~a~~~ 286 (336)
T 1p5q_A 223 LEL--------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--------YPNNKAAKTQLAVCQQRIRRQLAREKK 286 (336)
T ss_dssp HHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998 4778899999999999999999999999999999 788888999999999999999999 56
Q ss_pred HHHHHHHhhh
Q psy597 441 LYKQVLTRAH 450 (546)
Q Consensus 441 ~~~~al~~~~ 450 (546)
.|++++....
T Consensus 287 ~~~~~~~~~~ 296 (336)
T 1p5q_A 287 LYANMFERLA 296 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 7888877644
No 119
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.48 E-value=1.1e-12 Score=109.59 Aligned_cols=134 Identities=37% Similarity=0.539 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q psy597 336 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDD 415 (546)
Q Consensus 336 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~ 415 (546)
.+++.+|.++...|++++|+.++++++... |....++..+|.++...|++++|+.++++++.. .
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~ 65 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------D 65 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------C
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcC--------CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--------C
Confidence 467889999999999999999999998873 556778899999999999999999999999987 5
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCC
Q psy597 416 SNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDD 495 (546)
Q Consensus 416 ~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~ 495 (546)
|....++..+|.++...|++++|+.++++++.. .
T Consensus 66 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----------------------------------------------~ 99 (136)
T 2fo7_A 66 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL----------------------------------------------D 99 (136)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH----------------------------------------------C
T ss_pred CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----------------------------------------------C
Confidence 666778899999999999999999999998875 2
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q psy597 496 SNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 531 (546)
Q Consensus 496 ~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~ 531 (546)
|....++..+|.++...|++++|..++++++...|.
T Consensus 100 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 100 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 333557788999999999999999999999987653
No 120
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.48 E-value=1.3e-12 Score=109.12 Aligned_cols=133 Identities=35% Similarity=0.481 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q psy597 294 TMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEH 373 (546)
Q Consensus 294 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 373 (546)
.+++.+|.++...|++++|+.++++++... |....++..+|.++...|++++|+.++++++...
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------- 65 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-------- 65 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcC--------CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--------
Confidence 467889999999999999999999998762 3336688999999999999999999999999873
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q psy597 374 PDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAH 450 (546)
Q Consensus 374 ~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~ 450 (546)
|....++..+|.++...|++++|+.++++++.. .|....++..+|.++...|++++|..++++++...|
T Consensus 66 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 66 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 556778899999999999999999999999988 566677899999999999999999999999998644
No 121
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.48 E-value=7.6e-13 Score=121.25 Aligned_cols=164 Identities=15% Similarity=0.111 Sum_probs=139.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhH
Q psy597 213 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDV 292 (546)
Q Consensus 213 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 292 (546)
.++.+++.+|.+|...+++++|+.+|+++.+. ..
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----------------------------------------------g~ 49 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ----------------------------------------------GD 49 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----------------------------------------------TC
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----------------------------------------------CC
Confidence 45789999999999999999999999999871 23
Q ss_pred HHHHHHHHHHHHHhh----cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Q psy597 293 ATMLNILALVYRDQN----KYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGK----RGKYKEAEPLCKRALEI 364 (546)
Q Consensus 293 ~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~ 364 (546)
+.+++.+|.+|.. + ++++|+.+|+++.+. ..+.+++++|.+|.. .+++++|+.+|+++++.
T Consensus 50 ~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----------g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 118 (212)
T 3rjv_A 50 GDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----------GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD 118 (212)
T ss_dssp HHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc
Confidence 5779999999998 7 999999999999653 236689999999998 89999999999999976
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc-C-----C
Q psy597 365 REKVLGKEHPDVAKQLNNLALLCQN----QSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ-G-----K 434 (546)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~-g-----~ 434 (546)
. +....+.++++||.+|.. .+++++|+.+|+++++. +.+ +.++++||.+|... | +
T Consensus 119 ~------~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~------~~~---~~a~~~Lg~~y~~g~gg~~~~d 183 (212)
T 3rjv_A 119 S------ESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL------SRT---GYAEYWAGMMFQQGEKGFIEPN 183 (212)
T ss_dssp T------TSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT------SCT---THHHHHHHHHHHHCBTTTBCCC
T ss_pred C------CCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc------CCC---HHHHHHHHHHHHcCCCCCCCCC
Confidence 2 111568899999999999 89999999999999885 222 34789999999875 3 8
Q ss_pred HHHHHHHHHHHHHh
Q psy597 435 YKEAEILYKQVLTR 448 (546)
Q Consensus 435 ~~eA~~~~~~al~~ 448 (546)
+++|+.+|+++.+.
T Consensus 184 ~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 184 KQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999999986
No 122
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.47 E-value=1.7e-12 Score=124.84 Aligned_cols=234 Identities=10% Similarity=0.089 Sum_probs=185.7
Q ss_pred HHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHH
Q psy597 217 TLHNLVIQYASQGRY-EVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATM 295 (546)
Q Consensus 217 ~~~~lg~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 295 (546)
............|.+ ++|+..+.+++.+ .|....+
T Consensus 34 ~~~~~~~a~~~~~e~s~~aL~~t~~~L~~--------------------------------------------nP~~~ta 69 (306)
T 3dra_A 34 QIMGLLLALMKAEEYSERALHITELGINE--------------------------------------------LASHYTI 69 (306)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHH--------------------------------------------CTTCHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHH--------------------------------------------CcHHHHH
Confidence 333334444455555 6899999999984 5777889
Q ss_pred HHHHHHHHHHhh--cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHc---CCHHHHHHHHHHHHHHHH
Q psy597 296 LNILALVYRDQN--KYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLY----GKR---GKYKEAEPLCKRALEIRE 366 (546)
Q Consensus 296 ~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~----~~~---g~~~~A~~~~~~al~~~~ 366 (546)
|+..+.++...| ++++++..+..++.. +|....+|+..+.++ ... +++++++.++.++++.
T Consensus 70 Wn~R~~~L~~l~~~~~~eeL~~~~~~L~~--------nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~-- 139 (306)
T 3dra_A 70 WIYRFNILKNLPNRNLYDELDWCEEIALD--------NEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSS-- 139 (306)
T ss_dssp HHHHHHHHHTCTTSCHHHHHHHHHHHHHH--------CTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHcccccHHHHHHHHHHHHHH--------CcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHh--
Confidence 999999999999 999999999999987 455577899999888 777 8999999999999998
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCC------HHHH
Q psy597 367 KVLGKEHPDVAKQLNNLALLCQNQSKYE--EVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGK------YKEA 438 (546)
Q Consensus 367 ~~~~~~~~~~~~~~~~la~~~~~~g~~~--eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~------~~eA 438 (546)
+|....+|+..+.++...|.++ +++.++.++++. +|.+..++.+.+.+....|+ ++++
T Consensus 140 ------~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--------d~~N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 140 ------DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--------DLKNNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp ------CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred ------CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhccccchhhhHHHH
Confidence 5888999999999999999999 999999999998 89999999999999999988 9999
Q ss_pred HHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhH-HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHH
Q psy597 439 EILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKN-REKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKE 517 (546)
Q Consensus 439 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~ 517 (546)
++++.+++...|.+. .+.+...+++...|.... ....+.+++.. +...+....++..++.+|...|+.++
T Consensus 206 l~~~~~aI~~~p~n~----SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~-----~~~~~~s~~al~~la~~~~~~~~~~~ 276 (306)
T 3dra_A 206 LNYVKDKIVKCPQNP----STWNYLLGIHERFDRSITQLEEFSLQFVDL-----EKDQVTSSFALETLAKIYTQQKKYNE 276 (306)
T ss_dssp HHHHHHHHHHCSSCH----HHHHHHHHHHHHTTCCGGGGHHHHHTTEEG-----GGTEESCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhCCCCc----cHHHHHHHHHHhcCCChHHHHHHHHHHHhc-----cCCCCCCHHHHHHHHHHHHccCCHHH
Confidence 999999999854332 222333334444555333 33344444332 00135567789999999999999999
Q ss_pred HHHHHHHHHH
Q psy597 518 AEILYKQVLT 527 (546)
Q Consensus 518 A~~~~~~al~ 527 (546)
|+++|+.+.+
T Consensus 277 A~~~~~~l~~ 286 (306)
T 3dra_A 277 SRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999886
No 123
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.46 E-value=2.7e-12 Score=107.10 Aligned_cols=108 Identities=19% Similarity=0.277 Sum_probs=96.4
Q ss_pred hhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q psy597 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 369 (546)
Q Consensus 290 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 369 (546)
++.+.++..+|..++..|+|++|+.+|++++.+ .|..+.++.++|.+|..+|+|++|+..|++++++.....
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--------~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~ 76 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL--------DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETR 76 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccc
Confidence 567888999999999999999999999999998 455578999999999999999999999999999975542
Q ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 370 GKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406 (546)
Q Consensus 370 ~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 406 (546)
...+..+.++.++|.++...|++++|+.+|++++..
T Consensus 77 -~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 77 -ADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 233556789999999999999999999999999987
No 124
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.44 E-value=3.9e-13 Score=115.53 Aligned_cols=116 Identities=22% Similarity=0.185 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCC
Q psy597 355 EPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGK 434 (546)
Q Consensus 355 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~ 434 (546)
...|++++.+ +|....+++.+|.++...|++++|+.+|++++.+ +|..+.+++++|.+|...|+
T Consensus 7 ~~~~~~al~~--------~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~ 70 (148)
T 2vgx_A 7 GGTIAMLNEI--------SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--------DHYDSRFFLGLGACRQAMGQ 70 (148)
T ss_dssp CCSHHHHTTC--------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTC
T ss_pred hhhHHHHHcC--------CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--------CcccHHHHHHHHHHHHHHhh
Confidence 3456666655 5889999999999999999999999999999998 88889999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCC
Q psy597 435 YKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGK 514 (546)
Q Consensus 435 ~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~ 514 (546)
+++|+..|++++.+ .|....+++++|.+|...|+
T Consensus 71 ~~~A~~~~~~al~l----------------------------------------------~p~~~~~~~~lg~~~~~~g~ 104 (148)
T 2vgx_A 71 YDLAIHSYSYGAVM----------------------------------------------DIXEPRFPFHAAECLLQXGE 104 (148)
T ss_dssp HHHHHHHHHHHHHH----------------------------------------------STTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhc----------------------------------------------CCCCchHHHHHHHHHHHcCC
Confidence 99999999999986 45556778899999999999
Q ss_pred HHHHHHHHHHHHHHhhhh
Q psy597 515 YKEAEILYKQVLTRAHER 532 (546)
Q Consensus 515 ~~~A~~~~~~al~~~~~~ 532 (546)
+++|+.+|++++++.|++
T Consensus 105 ~~~A~~~~~~al~~~p~~ 122 (148)
T 2vgx_A 105 LAEAESGLFLAQELIANX 122 (148)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHCcCC
Confidence 999999999999988754
No 125
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.44 E-value=2.2e-12 Score=132.62 Aligned_cols=188 Identities=16% Similarity=0.177 Sum_probs=148.7
Q ss_pred HHHHHHHHHHHhh---cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHH
Q psy597 295 MLNILALVYRDQN---KYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKR----GKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 295 ~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~ 367 (546)
+++.+|.+|...| ++++|+.+|+++... .+..+..++++|.+|... +++++|+.+|+++.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~--------g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa----- 244 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSR--------GTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA----- 244 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT--------TCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-----
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-----
Confidence 7899999999999 999999999999876 233356678999999766 79999999999986
Q ss_pred hcCCCChHHHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC-----CHHHHH
Q psy597 368 VLGKEHPDVAKQLNNLALL-C--QNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQG-----KYKEAE 439 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~-~--~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g-----~~~eA~ 439 (546)
|..+.+++++|.+ + ...+++++|+.+|+++.+. . .+.++++||.+|. .| ++++|+
T Consensus 245 ------~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--------g--~~~A~~~Lg~~y~-~G~g~~~d~~~A~ 307 (452)
T 3e4b_A 245 ------PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--------D--QPRAELLLGKLYY-EGKWVPADAKAAE 307 (452)
T ss_dssp ------GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--------T--CHHHHHHHHHHHH-HCSSSCCCHHHHH
T ss_pred ------CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--------C--CHHHHHHHHHHHH-cCCCCCCCHHHHH
Confidence 2346678999998 4 4689999999999999864 2 4678999999998 66 999999
Q ss_pred HHHHHHHHhhhhcccCcccCCChhhHHHHh----hchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH----
Q psy597 440 ILYKQVLTRAHEREFGACDGDNKPIWQDRQ----KNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK---- 511 (546)
Q Consensus 440 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~---- 511 (546)
.+|+++. +. .......++.++.. ..++..|..+|.+|.+ .....+.++||.+|..
T Consensus 308 ~~~~~Aa---~g----~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~----------~g~~~A~~~Lg~~y~~G~g~ 370 (452)
T 3e4b_A 308 AHFEKAV---GR----EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR----------NGQNSADFAIAQLFSQGKGT 370 (452)
T ss_dssp HHHHTTT---TT----CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT----------TTCTTHHHHHHHHHHSCTTB
T ss_pred HHHHHHh---CC----CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh----------hChHHHHHHHHHHHHhCCCC
Confidence 9999988 21 12334455555554 2378888888888764 2335678899999985
Q ss_pred cCCHHHHHHHHHHHHHHh
Q psy597 512 QGKYKEAEILYKQVLTRA 529 (546)
Q Consensus 512 ~g~~~~A~~~~~~al~~~ 529 (546)
..++.+|..+|++|.+..
T Consensus 371 ~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 371 KPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp CCCHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHCC
Confidence 468999999999987643
No 126
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.44 E-value=4.7e-13 Score=115.04 Aligned_cols=115 Identities=17% Similarity=0.139 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCH
Q psy597 314 NLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKY 393 (546)
Q Consensus 314 ~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 393 (546)
..|++++.+ .|....+++.+|.++...|++++|+.+|++++.. .|....++.++|.++...|++
T Consensus 8 ~~~~~al~~--------~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~ 71 (148)
T 2vgx_A 8 GTIAMLNEI--------SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--------DHYDSRFFLGLGACRQAMGQY 71 (148)
T ss_dssp CSHHHHTTC--------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCH
T ss_pred hhHHHHHcC--------CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--------CcccHHHHHHHHHHHHHHhhH
Confidence 345566544 6777899999999999999999999999999998 477888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhc
Q psy597 394 EEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 452 (546)
Q Consensus 394 ~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~ 452 (546)
++|+.+|++++.+ +|..+.+++++|.+|..+|++++|+..|++++.+.+.+
T Consensus 72 ~~A~~~~~~al~l--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 122 (148)
T 2vgx_A 72 DLAIHSYSYGAVM--------DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANX 122 (148)
T ss_dssp HHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhc--------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 9999999999999 78888899999999999999999999999999987653
No 127
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.44 E-value=5.6e-12 Score=109.81 Aligned_cols=142 Identities=23% Similarity=0.192 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q psy597 333 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLG 412 (546)
Q Consensus 333 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~ 412 (546)
..+..+..+|.++...|++++|+.+|.+++... |....++.++|.++...|++++|+.+|++++.+
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------ 76 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELN--------PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL------ 76 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Confidence 457789999999999999999999999999983 667889999999999999999999999999998
Q ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcC
Q psy597 413 PDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLG 492 (546)
Q Consensus 413 ~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~ 492 (546)
.|....++.++|.++...|++++|+.+|++++...+.
T Consensus 77 --~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~----------------------------------------- 113 (166)
T 1a17_A 77 --DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH----------------------------------------- 113 (166)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-----------------------------------------
T ss_pred --CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-----------------------------------------
Confidence 7777889999999999999999999999999986322
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhcc
Q psy597 493 PDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREF 534 (546)
Q Consensus 493 ~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~~~~ 534 (546)
++ .......++..+...|++++|+.++.++..+.+....
T Consensus 114 --~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 152 (166)
T 1a17_A 114 --DK-DAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDI 152 (166)
T ss_dssp --CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred --CH-HHHHHHHHHHHHHHHHHHHHHHHcccchHHHhcccch
Confidence 11 1223345566688899999999999999888865443
No 128
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.43 E-value=4.9e-12 Score=110.17 Aligned_cols=139 Identities=17% Similarity=0.144 Sum_probs=120.3
Q ss_pred hhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q psy597 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 369 (546)
Q Consensus 290 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 369 (546)
...+..+..+|.++...|++++|+.+|.+++... |....++..+|.++...|++++|+.++.+++...
T Consensus 10 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~---- 77 (166)
T 1a17_A 10 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELN--------PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD---- 77 (166)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----
Confidence 4567889999999999999999999999999873 4447789999999999999999999999999983
Q ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH--HHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 370 GKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTK--NNLASCYLKQGKYKEAEILYKQVLT 447 (546)
Q Consensus 370 ~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~--~~La~~y~~~g~~~eA~~~~~~al~ 447 (546)
|....++.++|.++...|++++|+.+|++++.+ .|....++ ..++..+...|++++|+..+.++..
T Consensus 78 ----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 78 ----KKYIKGYYRRAASNMALGKFRAALRDYETVVKV--------KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp ----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 667889999999999999999999999999998 44444455 4555558899999999999999888
Q ss_pred hhhhc
Q psy597 448 RAHER 452 (546)
Q Consensus 448 ~~~~~ 452 (546)
.....
T Consensus 146 ~~~~~ 150 (166)
T 1a17_A 146 VVDSL 150 (166)
T ss_dssp HHHHC
T ss_pred Hhccc
Confidence 76543
No 129
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.42 E-value=2e-12 Score=118.11 Aligned_cols=149 Identities=19% Similarity=0.152 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q psy597 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPD 414 (546)
Q Consensus 335 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~ 414 (546)
...++.+|.++...|++++|+.+|++++. + ...++.++|.++...|++++|+.+|++++.+
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~~----------~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------- 66 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQD----------P-HSRICFNIGCMYTILKNMTEAEKAFTRSINR-------- 66 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSSS----------C-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHcC----------C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Confidence 45678999999999999999999999841 2 3568999999999999999999999999998
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCC
Q psy597 415 DSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPD 494 (546)
Q Consensus 415 ~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~ 494 (546)
+|....++.++|.+|...|++++|+..|++++...+....... ... ....
T Consensus 67 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~----------~~~--------------------~~~~ 116 (213)
T 1hh8_A 67 DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDY----------KIL--------------------GLQF 116 (213)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEEC----------GGG--------------------TBCC
T ss_pred CccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHH----------HHh--------------------cccc
Confidence 7778899999999999999999999999999998665431110 000 0012
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Q psy597 495 DSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 532 (546)
Q Consensus 495 ~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~~ 532 (546)
.|....++.++|.+|...|++++|+.+|++++++.|..
T Consensus 117 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 117 KLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp EEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred CccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 56677899999999999999999999999999988754
No 130
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.42 E-value=1.5e-12 Score=136.78 Aligned_cols=221 Identities=11% Similarity=0.055 Sum_probs=173.3
Q ss_pred HhhhcCCCchHHHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhh
Q psy597 203 QQVNAGYEIPARLRTLHNLVIQYAS-------QGRYE-------VAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKE 268 (546)
Q Consensus 203 ~~~~~~~~~p~~~~~~~~lg~~~~~-------~g~~~-------~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~ 268 (546)
.........|..+.+|+.+|..+.. .|+++ +|+..|+++++.
T Consensus 260 ~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~------------------------ 315 (530)
T 2ooe_A 260 AYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST------------------------ 315 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT------------------------
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH------------------------
Confidence 3444444567788999999999886 79987 778888777641
Q ss_pred hHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc
Q psy597 269 SYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKR 348 (546)
Q Consensus 269 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~ 348 (546)
..|....++..+|.++...|++++|...|++++.+. ++.+ ..+|..+|.++...
T Consensus 316 -------------------~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-----p~~~--~~~~~~~~~~~~~~ 369 (530)
T 2ooe_A 316 -------------------LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-----DIDP--TLVYIQYMKFARRA 369 (530)
T ss_dssp -------------------TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-----SSCH--HHHHHHHHHHHHHH
T ss_pred -------------------hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-----ccCc--hHHHHHHHHHHHHh
Confidence 245667889999999999999999999999999862 2222 35899999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q psy597 349 GKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALL-CQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLAS 427 (546)
Q Consensus 349 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~ 427 (546)
|++++|..+|.++++.. |.....+...+.+ +...|++++|..+|+++++. .|..+.++..++.
T Consensus 370 ~~~~~A~~~~~~Al~~~--------~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~--------~p~~~~~~~~~~~ 433 (530)
T 2ooe_A 370 EGIKSGRMIFKKAREDA--------RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--------YGDIPEYVLAYID 433 (530)
T ss_dssp HHHHHHHHHHHHHHTCT--------TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--------HTTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcc--------CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH--------CCCCHHHHHHHHH
Confidence 99999999999998762 3333444455544 34699999999999999998 5666788999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCH-HHHHHHHHHH
Q psy597 428 CYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDS-NVAKTKNNLA 506 (546)
Q Consensus 428 ~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~-~~~~~~~~La 506 (546)
++...|++++|..+|++++...+. +| ....++...+
T Consensus 434 ~~~~~g~~~~Ar~~~~~al~~~~~-------------------------------------------~~~~~~~lw~~~~ 470 (530)
T 2ooe_A 434 YLSHLNEDNNTRVLFERVLTSGSL-------------------------------------------PPEKSGEIWARFL 470 (530)
T ss_dssp HHTTTTCHHHHHHHHHHHHHSCCS-------------------------------------------CGGGCHHHHHHHH
T ss_pred HHHhCCCHhhHHHHHHHHHhccCC-------------------------------------------CHHHHHHHHHHHH
Confidence 999999999999999999875221 22 2234566667
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHhhhh
Q psy597 507 SCYLKQGKYKEAEILYKQVLTRAHER 532 (546)
Q Consensus 507 ~~y~~~g~~~~A~~~~~~al~~~~~~ 532 (546)
......|+.+.+..++.++++..|+.
T Consensus 471 ~~e~~~G~~~~~~~~~~r~~~~~p~~ 496 (530)
T 2ooe_A 471 AFESNIGDLASILKVEKRRFTAFREE 496 (530)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCchh
Confidence 77778899999999999999988853
No 131
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.41 E-value=4.7e-12 Score=105.24 Aligned_cols=123 Identities=14% Similarity=0.085 Sum_probs=106.3
Q ss_pred hHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q psy597 291 DVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 370 (546)
Q Consensus 291 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 370 (546)
..+..+..+|..++..|++++|+..|.+++.+ .|....++.++|.++...|++++|+..|++++.+
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------ 67 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--------APEDARGYSNRAAALAKLMSFPEAIADCNKAIEK------ 67 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------
Confidence 45678999999999999999999999999998 3445789999999999999999999999999998
Q ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q psy597 371 KEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK 431 (546)
Q Consensus 371 ~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~ 431 (546)
.|....++.++|.++...|++++|+.+|++++.+.... ++.|....++..++.+...
T Consensus 68 --~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 68 --DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEV--NNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--HTTTTHHHHHHHHHHHHHH
T ss_pred --CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCccc--CCchhHHHHHHHHHHHHHh
Confidence 47778899999999999999999999999999994332 1237777778778777654
No 132
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.41 E-value=1.4e-12 Score=134.13 Aligned_cols=256 Identities=13% Similarity=0.059 Sum_probs=174.1
Q ss_pred HHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhh---hhHHHHHHHHHHHHhccC
Q psy597 214 RLRTLHNLVIQYASQG-----RYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRK---ESYDIVKQAKVAQILGSG 285 (546)
Q Consensus 214 ~~~~~~~lg~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~---~~~~~~~~~~~~~~l~~~ 285 (546)
.+.+++.+|.++...| ++++|+.+|+++++. +... +...+...+.... .............
T Consensus 68 ~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~-----g~~~-A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~----- 136 (452)
T 3e4b_A 68 SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFAN-----GEGN-TLIPLAMLYLQYPHSFPNVNAQQQISQWQ----- 136 (452)
T ss_dssp ---CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHT-----TCSS-CHHHHHHHHHHCGGGCTTCCHHHHHHHHH-----
T ss_pred CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHC-----CCHH-HHHHHHHHHHhCCCCCCCHHHHHHHHHHH-----
Confidence 6678999999777776 889999999999872 1111 1111111111111 1111111111111
Q ss_pred CCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHH
Q psy597 286 GHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRG---KYKEAEPLCKRAL 362 (546)
Q Consensus 286 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al 362 (546)
.+..+.+++.+|.+|...+.++++............ ..+|. +++++|.+|...| ++++|+.+|+++.
T Consensus 137 ---~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~----~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa 206 (452)
T 3e4b_A 137 ---AAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAAL----NTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGV 206 (452)
T ss_dssp ---HHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHT----TTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ---HCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHH----cCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHH
Confidence 122356789999999999977666655443333221 12332 8999999999999 9999999999999
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-H--HHcCC
Q psy597 363 EIREKVLGKEHPDVAKQLNNLALLCQNQS-----KYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASC-Y--LKQGK 434 (546)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g-----~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~-y--~~~g~ 434 (546)
+.. +..+..++++|.+| ..| ++++|+.+|+++. +..+.++++||.+ | ...|+
T Consensus 207 ~~g--------~~~a~~~~~Lg~~y-~~g~~~~~d~~~A~~~~~~aa-----------~g~~~a~~~Lg~~~~~~~~~~d 266 (452)
T 3e4b_A 207 SRG--------TVTAQRVDSVARVL-GDATLGTPDEKTAQALLEKIA-----------PGYPASWVSLAQLLYDFPELGD 266 (452)
T ss_dssp HTT--------CSCHHHHHHHHHHH-TCGGGSSCCHHHHHHHHHHHG-----------GGSTHHHHHHHHHHHHSGGGCC
T ss_pred HCC--------CHHHHHHHHHHHHH-hCCCCCCCCHHHHHHHHHHHc-----------CCCHHHHHHHHHHHHhCCCCCC
Confidence 873 66677779999998 455 7889999999885 2345688999999 4 57899
Q ss_pred HHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhc-----hhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q psy597 435 YKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKN-----KAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCY 509 (546)
Q Consensus 435 ~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y 509 (546)
+++|+.+|+++.... .......++.++. .| ++..|..+|.+|. +..+.++++||.+|
T Consensus 267 ~~~A~~~~~~Aa~~g------~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----------~g~~~A~~~Lg~~y 328 (452)
T 3e4b_A 267 VEQMMKYLDNGRAAD------QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----------GREVAADYYLGQIY 328 (452)
T ss_dssp HHHHHHHHHHHHHTT------CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----------TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCC------CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----------CCCHHHHHHHHHHH
Confidence 999999999998642 2234445555555 44 7777777776665 23457889999999
Q ss_pred HH----cCCHHHHHHHHHHHHHH
Q psy597 510 LK----QGKYKEAEILYKQVLTR 528 (546)
Q Consensus 510 ~~----~g~~~~A~~~~~~al~~ 528 (546)
.. ..++++|..+|+++.+.
T Consensus 329 ~~G~g~~~d~~~A~~~~~~Aa~~ 351 (452)
T 3e4b_A 329 RRGYLGKVYPQKALDHLLTAARN 351 (452)
T ss_dssp HTTTTSSCCHHHHHHHHHHHHTT
T ss_pred HCCCCCCcCHHHHHHHHHHHHhh
Confidence 87 44999999999999864
No 133
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.41 E-value=3e-13 Score=122.44 Aligned_cols=141 Identities=19% Similarity=0.200 Sum_probs=112.2
Q ss_pred ChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCC----------HHHHHHHHHHHHHHHHcCCHHHHHHHH
Q psy597 289 HPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENH----------AAVAATLNNLAVLYGKRGKYKEAEPLC 358 (546)
Q Consensus 289 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~----------~~~~~~~~~la~~~~~~g~~~~A~~~~ 358 (546)
.+..+..+..+|..++..|+|++|+.+|.+++.+.+.. ++. .....++.++|.++...|++++|+.+|
T Consensus 34 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 111 (198)
T 2fbn_A 34 KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHT--EEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHA 111 (198)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTC--TTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc--cccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 35567778889999999999999999999998875332 100 012478999999999999999999999
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHH
Q psy597 359 KRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEA 438 (546)
Q Consensus 359 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA 438 (546)
.+++.+ .|....+++++|.++...|++++|+.+|++++.+ .|....++..++.++...++..++
T Consensus 112 ~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~ 175 (198)
T 2fbn_A 112 SKVLKI--------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL--------NPNNLDIRNSYELCVNKLKEARKK 175 (198)
T ss_dssp HHHHHH--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHh--------CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHHHHHHHH
Confidence 999998 3777889999999999999999999999999998 777888999999999999988888
Q ss_pred H-HHHHHHHH
Q psy597 439 E-ILYKQVLT 447 (546)
Q Consensus 439 ~-~~~~~al~ 447 (546)
. ..|...+.
T Consensus 176 ~~~~~~~~f~ 185 (198)
T 2fbn_A 176 DKLTFGGMFD 185 (198)
T ss_dssp ----------
T ss_pred HHHHHHHHhc
Confidence 7 45555544
No 134
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.39 E-value=2.1e-12 Score=117.89 Aligned_cols=141 Identities=18% Similarity=0.126 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 371 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 371 (546)
....++.+|.++...|++++|+..|++++. + .+.+++++|.+|...|++++|+.+|++++.+.
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~-------~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------ 67 (213)
T 1hh8_A 5 EAISLWNEGVLAADKKDWKGALDAFSAVQD-------P----HSRICFNIGCMYTILKNMTEAEKAFTRSINRD------ 67 (213)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSSS-------C----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHcC-------C----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------
Confidence 345688999999999999999999999851 1 25689999999999999999999999999983
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc--------CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy597 372 EHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKL--------GPDDSNVAKTKNNLASCYLKQGKYKEAEILYK 443 (546)
Q Consensus 372 ~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~--------~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~ 443 (546)
|....++.++|.++...|++++|+.+|++++++..... ....|....++.++|.+|...|++++|+.+|+
T Consensus 68 --~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 145 (213)
T 1hh8_A 68 --KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLA 145 (213)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred --ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence 77788999999999999999999999999999632110 00234567899999999999999999999999
Q ss_pred HHHHhhhh
Q psy597 444 QVLTRAHE 451 (546)
Q Consensus 444 ~al~~~~~ 451 (546)
+++...+.
T Consensus 146 ~al~~~p~ 153 (213)
T 1hh8_A 146 LATSMKSE 153 (213)
T ss_dssp HHHTTCCS
T ss_pred HHHHcCcc
Confidence 99998654
No 135
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.39 E-value=8.1e-12 Score=103.78 Aligned_cols=103 Identities=17% Similarity=0.130 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q psy597 333 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLG 412 (546)
Q Consensus 333 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~ 412 (546)
..+..+..+|..+...|++++|+.+|.+++.+. |....++.++|.++...|++++|+.+|++++.+
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------ 67 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--------PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK------ 67 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------
Confidence 346789999999999999999999999999983 777899999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 413 PDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 413 ~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
+|....++.++|.+|...|++++|+..|++++.+.|+
T Consensus 68 --~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 104 (126)
T 3upv_A 68 --DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAE 104 (126)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred --CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcc
Confidence 7888899999999999999999999999999998643
No 136
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.39 E-value=5.8e-13 Score=120.52 Aligned_cols=131 Identities=15% Similarity=0.031 Sum_probs=101.4
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh--
Q psy597 297 NILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHP-- 374 (546)
Q Consensus 297 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-- 374 (546)
...+......|++++|.+.+...... .+..+..+..+|..+...|+|++|+.+|.+++.+.. ..+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-----~~~~~ 74 (198)
T 2fbn_A 8 HHHSSGRENLYFQGAKKSIYDYTDEE--------KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFI-----HTEEW 74 (198)
T ss_dssp --------------CCCSGGGCCHHH--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTT-----TCTTC
T ss_pred cchhhhhhhhhhccccCchhhCCHHH--------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh-----ccccc
Confidence 34456666778888888888766544 345588899999999999999999999999998752 112
Q ss_pred -----------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy597 375 -----------DVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYK 443 (546)
Q Consensus 375 -----------~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~ 443 (546)
....++.++|.++...|++++|+.+|++++.+ +|....+++++|.+|..+|++++|+.+|+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~ 146 (198)
T 2fbn_A 75 DDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI--------DKNNVKALYKLGVANMYFGFLEEAKENLY 146 (198)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 01478999999999999999999999999998 77788999999999999999999999999
Q ss_pred HHHHh
Q psy597 444 QVLTR 448 (546)
Q Consensus 444 ~al~~ 448 (546)
+++.+
T Consensus 147 ~al~~ 151 (198)
T 2fbn_A 147 KAASL 151 (198)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99986
No 137
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.38 E-value=1.3e-10 Score=112.32 Aligned_cols=204 Identities=11% Similarity=0.065 Sum_probs=163.4
Q ss_pred CChhHHHHHHHHHHHHHHhhc----------HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC--HHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNK----------YKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGK--YKEAE 355 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~--~~~A~ 355 (546)
..|....+|+..+.++...+. +.+++.++..++.. +|....+|+..+.++...|+ +++++
T Consensus 59 ~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~--------~PKny~aW~hR~wlL~~l~~~~~~~EL 130 (331)
T 3dss_A 59 ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--------NPKSYGTWHHRCWLLSRLPEPNWAREL 130 (331)
T ss_dssp TCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHCSSCCHHHHH
T ss_pred HCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHhccCcccHHHHH
Confidence 467778889999999888776 67888888888876 56668899999999999994 99999
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc--
Q psy597 356 PLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSK-YEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ-- 432 (546)
Q Consensus 356 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~-- 432 (546)
.++.++++. +|....+|+..+.+....|. +++++.++.++++. +|.+..+|++.+.++...
T Consensus 131 ~~~~k~l~~--------dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--------~p~N~SAW~~R~~ll~~l~~ 194 (331)
T 3dss_A 131 ELCARFLEA--------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--------NFSNYSSWHYRSCLLPQLHP 194 (331)
T ss_dssp HHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHh--------CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHhhh
Confidence 999999998 58889999999999999999 59999999999998 899999999999999887
Q ss_pred ------------CCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHH-----Hhh-----------chhhHHHHHHHHHH
Q psy597 433 ------------GKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQD-----RQK-----------NKAKNREKYYQRAL 484 (546)
Q Consensus 433 ------------g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~-----~~~-----------~~~~~A~~~~~~Al 484 (546)
+.++++++++.+++...|.+ ..+|.| ... +.+.+++..+.+.+
T Consensus 195 ~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d---------~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~ell 265 (331)
T 3dss_A 195 QPDSGPQGRLPENVLLKELELVQNAFFTDPND---------QSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQ 265 (331)
T ss_dssp CC------CCCHHHHHHHHHHHHHHHHHSTTC---------HHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccchHHHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHH
Confidence 56899999999999986654 333332 111 34556666666666
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHhhhh
Q psy597 485 EIYELKLGPDDSNVAKTKNNLASCYL---KQGKYKEAEILYKQVLTRAHER 532 (546)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~La~~y~---~~g~~~~A~~~~~~al~~~~~~ 532 (546)
++ .|+...++..++.+.. ..|..++...++.+.+++.|..
T Consensus 266 e~--------~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r 308 (331)
T 3dss_A 266 EL--------EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR 308 (331)
T ss_dssp HH--------CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGG
T ss_pred hh--------CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcch
Confidence 55 4555556665555443 3588899999999999988754
No 138
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.37 E-value=6.2e-12 Score=104.98 Aligned_cols=125 Identities=22% Similarity=0.326 Sum_probs=113.1
Q ss_pred CCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy597 286 GHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 365 (546)
Q Consensus 286 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 365 (546)
....+.....++.+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+.++++++...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 80 (133)
T 2lni_A 9 SHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR--------NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE 80 (133)
T ss_dssp CCSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC
T ss_pred CCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 4467888999999999999999999999999999976 34447789999999999999999999999999983
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCC
Q psy597 366 EKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGK 434 (546)
Q Consensus 366 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~ 434 (546)
|....++.++|.++...|++++|+.+|++++.+ .|....++..++.++..+|+
T Consensus 81 --------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 81 --------PTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL--------DSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp --------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CGGGTHHHHHHHHHHHHHTC
T ss_pred --------CCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhcC
Confidence 667889999999999999999999999999998 78888899999999998875
No 139
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.37 E-value=1.4e-12 Score=125.11 Aligned_cols=166 Identities=23% Similarity=0.198 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q psy597 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPD 414 (546)
Q Consensus 335 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~ 414 (546)
+..+..+|..+...|++++|+.+|.+++.. .|....++.++|.+|...|++++|+..|++++++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-------- 67 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL-------- 67 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------
Confidence 567899999999999999999999999998 3777889999999999999999999999999988
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHH---------------------------
Q psy597 415 DSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQD--------------------------- 467 (546)
Q Consensus 415 ~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~--------------------------- 467 (546)
+|....+++++|.+|..+|++++|+..|++++.+.+...... ....+..
T Consensus 68 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l 143 (281)
T 2c2l_A 68 DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNF----GDDIPSALRIAKKKRWNSIEERRIHQESELHSYL 143 (281)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCC----CSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 788889999999999999999999999999999988653221 1111111
Q ss_pred --HhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH
Q psy597 468 --RQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ-GKYKEAEILYKQVLTR 528 (546)
Q Consensus 468 --~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~-g~~~~A~~~~~~al~~ 528 (546)
...|+++.|...+.++++ . .|........++.++... +.+++|..+|.++.+.
T Consensus 144 ~~l~~~~~~~A~~~~~~al~-------~-~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 144 TRLIAAERERELEECQRNHE-------G-HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHHHHHHHHHTTTSGGGT-------T-TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHHHHHHHHHhhhc-------c-ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 112333333333333333 2 455566667777777766 7788899999888664
No 140
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.37 E-value=6.4e-11 Score=130.85 Aligned_cols=237 Identities=13% Similarity=0.138 Sum_probs=140.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHHHHHH
Q psy597 221 LVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILA 300 (546)
Q Consensus 221 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~la 300 (546)
+|.++...|.|++|..+|+++- ....|...+...+..+.+..+.. .......+|+.+|
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~--------~~~~A~~VLie~i~nldrAiE~A--------------ervn~p~vWsqLA 1112 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD--------VNTSAVQVLIEHIGNLDRAYEFA--------------ERCNEPAVWSQLA 1112 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC--------CHHHHHHHHHHHHhhHHHHHHHH--------------HhcCCHHHHHHHH
Confidence 4899999999999999999873 22232222221222221111111 1224477899999
Q ss_pred HHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-----------
Q psy597 301 LVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL----------- 369 (546)
Q Consensus 301 ~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----------- 369 (546)
.++...|++++|+..|.++ + + ...|..+|.++...|+|++|+++|..+.+..+...
T Consensus 1113 KAql~~G~~kEAIdsYiKA---------d-D---~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAK 1179 (1630)
T 1xi4_A 1113 KAQLQKGMVKEAIDSYIKA---------D-D---PSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAK 1179 (1630)
T ss_pred HHHHhCCCHHHHHHHHHhc---------C-C---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHh
Confidence 9999999999999999876 1 1 55788899999999999999999998876531100
Q ss_pred -C--------CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHH
Q psy597 370 -G--------KEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEI 440 (546)
Q Consensus 370 -~--------~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~ 440 (546)
+ -+.+.. ..+.++|..+...|+|++|..+|.++ ..|..+|.+|.++|++++|++
T Consensus 1180 l~rleele~fI~~~n~-ad~~~iGd~le~eg~YeeA~~~Y~kA----------------~ny~rLA~tLvkLge~q~AIE 1242 (1630)
T 1xi4_A 1180 TNRLAELEEFINGPNN-AHIQQVGDRCYDEKMYDAAKLLYNNV----------------SNFGRLASTLVHLGEYQAAVD 1242 (1630)
T ss_pred hcCHHHHHHHHhCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhh----------------hHHHHHHHHHHHhCCHHHHHH
Confidence 0 000111 12334555555555555555555443 124445555555555555555
Q ss_pred HHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Q psy597 441 LYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEI 520 (546)
Q Consensus 441 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~ 520 (546)
.++++... ..+......+...+++..|..+... + ...+..+..++..|...|.+++|+.
T Consensus 1243 aarKA~n~---------~aWkev~~acve~~Ef~LA~~cgl~-I-----------iv~~deLeeli~yYe~~G~feEAI~ 1301 (1630)
T 1xi4_A 1243 GARKANST---------RTWKEVCFACVDGKEFRLAQMCGLH-I-----------VVHADELEELINYYQDRGYFEELIT 1301 (1630)
T ss_pred HHHHhCCH---------HHHHHHHHHHhhhhHHHHHHHHHHh-h-----------hcCHHHHHHHHHHHHHcCCHHHHHH
Confidence 55554221 1122222223334444444333221 1 1123455688999999999999999
Q ss_pred HHHHHHHHhh
Q psy597 521 LYKQVLTRAH 530 (546)
Q Consensus 521 ~~~~al~~~~ 530 (546)
+++.++.+.+
T Consensus 1302 LlE~aL~Ler 1311 (1630)
T 1xi4_A 1302 MLEAALGLER 1311 (1630)
T ss_pred HHHHHhccCh
Confidence 9999987653
No 141
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.37 E-value=9.3e-12 Score=103.31 Aligned_cols=124 Identities=27% Similarity=0.344 Sum_probs=112.2
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
..+..+.++..+|.++...|++++|+.+|++++... |....++..+|.++...|++++|+.++.+++...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-- 76 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELN--------PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-- 76 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC--
Confidence 567788999999999999999999999999999873 3346789999999999999999999999999883
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCH
Q psy597 368 VLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKY 435 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~ 435 (546)
|....++..+|.++...|++++|+.+|++++.+ .|....++..+|.++...|++
T Consensus 77 ------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 77 ------PAYSKAYGRMGLALSSLNKHVEAVAYYKKALEL--------DPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp ------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTTC
T ss_pred ------ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHHhcC
Confidence 666788999999999999999999999999998 677778899999999999876
No 142
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.36 E-value=2.7e-11 Score=103.18 Aligned_cols=119 Identities=22% Similarity=0.127 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC----CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 334 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG----KEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYEL 409 (546)
Q Consensus 334 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~ 409 (546)
.+..+.++|..+...|+|++|+..|++++++...... ...|..+.+|.++|.++..+|+|++|+.+|++|++++..
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 3667899999999999999999999999999722100 001234569999999999999999999999999998666
Q ss_pred hcCCCChHHHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhhhhcc
Q psy597 410 KLGPDDSNVAKTK----NNLASCYLKQGKYKEAEILYKQVLTRAHERE 453 (546)
Q Consensus 410 ~~~~~~~~~~~~~----~~La~~y~~~g~~~eA~~~~~~al~~~~~~~ 453 (546)
.. .-+|+...+| +++|.++..+|++++|+..|++++.+.|++.
T Consensus 90 ~~-e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~ 136 (159)
T 2hr2_A 90 RG-ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 136 (159)
T ss_dssp HC-CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred cc-cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcH
Confidence 53 4467788888 9999999999999999999999999988754
No 143
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.35 E-value=1e-12 Score=135.11 Aligned_cols=128 Identities=19% Similarity=0.184 Sum_probs=108.6
Q ss_pred HhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC-------CChHHH
Q psy597 305 DQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK-------EHPDVA 377 (546)
Q Consensus 305 ~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------~~~~~~ 377 (546)
..+++++|+..|..++.. .|..+..+.++|.+++..|+|++|+.+|.+++.+....... ..+...
T Consensus 246 ~l~~~~~A~~~~~~~~~~--------~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~ 317 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKE--------KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLL 317 (457)
T ss_dssp EEEEEECCCCGGGSCHHH--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHH--------HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHH
Confidence 456777888888887766 45668899999999999999999999999999986211000 011237
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 378 KQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 378 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
.+++++|.+|..+|++++|+.+|++++.+ +|....+++++|.+|..+|++++|+..|++++.+
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGL--------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999 7888999999999999999999999999999986
No 144
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.35 E-value=9.2e-12 Score=103.90 Aligned_cols=104 Identities=16% Similarity=0.194 Sum_probs=95.1
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy597 329 ENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYE 408 (546)
Q Consensus 329 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~ 408 (546)
...+....++..+|.++...|++++|+.+|++++.. .|....++.++|.++...|++++|+.+|++++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-- 79 (133)
T 2lni_A 10 HMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR--------NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL-- 79 (133)
T ss_dssp CSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH--
T ss_pred CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--
Confidence 345677889999999999999999999999999987 3666889999999999999999999999999998
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 409 LKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 409 ~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
.|....++.++|.+|...|++++|+.+|++++..
T Consensus 80 ------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 80 ------EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp ------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------CCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 6777889999999999999999999999999886
No 145
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.34 E-value=9.2e-12 Score=106.03 Aligned_cols=119 Identities=21% Similarity=0.106 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC----CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 376 VAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLG----PDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 376 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~----~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
.+..+.++|..++..|+|++|+..|++|+++...... ...|..+.+|.++|.++..+|+|++|+..|++++.+
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l--- 86 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY--- 86 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---
Confidence 5667889999999999999999999999999422100 001234569999999999999999999999999875
Q ss_pred cccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHH----HHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 452 REFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTK----NNLASCYLKQGKYKEAEILYKQVLT 527 (546)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~----~~La~~y~~~g~~~~A~~~~~~al~ 527 (546)
|.+++++ +|....+| +++|.++..+|++++|+..|+++++
T Consensus 87 ----------------------------~n~~~e~--------~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 87 ----------------------------FNRRGEL--------NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp ----------------------------HHHHCCT--------TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----------------------------hhccccC--------CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3333333 67778888 9999999999999999999999999
Q ss_pred Hhhhhc
Q psy597 528 RAHERE 533 (546)
Q Consensus 528 ~~~~~~ 533 (546)
+.|+..
T Consensus 131 l~p~d~ 136 (159)
T 2hr2_A 131 MIEERK 136 (159)
T ss_dssp HHHHCC
T ss_pred cCCCcH
Confidence 998754
No 146
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.34 E-value=1.4e-11 Score=104.87 Aligned_cols=106 Identities=19% Similarity=0.182 Sum_probs=99.1
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy597 331 HAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELK 410 (546)
Q Consensus 331 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~ 410 (546)
.|.....++.+|.++...|++++|+.+|++++.. +|....++.++|.++...|++++|+.+|++++.+
T Consensus 14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---- 81 (142)
T 2xcb_A 14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML--------DHYDARYFLGLGACRQSLGLYEQALQSYSYGALM---- 81 (142)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----
Confidence 6777889999999999999999999999999988 4778889999999999999999999999999999
Q ss_pred cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhc
Q psy597 411 LGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 452 (546)
Q Consensus 411 ~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~ 452 (546)
+|..+.+++++|.+|...|++++|+.+|++++.+.|.+
T Consensus 82 ----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 119 (142)
T 2xcb_A 82 ----DINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQ 119 (142)
T ss_dssp ----CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC
T ss_pred ----CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 78888899999999999999999999999999987654
No 147
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.34 E-value=1.2e-11 Score=107.86 Aligned_cols=131 Identities=20% Similarity=0.124 Sum_probs=110.3
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcC---CC-------CHHHHHHHHHHHHHHHHcCCHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLG---EN-------HAAVAATLNNLAVLYGKRGKYKEAEPL 357 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g---~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~ 357 (546)
.....+..+..+|..++..|+|++|+..|.+++.+.+.... +. .|....++.++|.+|...|+|++|+.+
T Consensus 6 e~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~ 85 (162)
T 3rkv_A 6 DKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEET 85 (162)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 34567888999999999999999999999999998655321 11 455678999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHH-HHHHHHHHHHHHcCC
Q psy597 358 CKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVA-KTKNNLASCYLKQGK 434 (546)
Q Consensus 358 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~-~~~~~La~~y~~~g~ 434 (546)
|.+++.+ +|....+++.+|.+|...|++++|+.+|++++.+ +|... .+...++.+....++
T Consensus 86 ~~~al~~--------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--------~p~~~~~~~~~l~~~~~~~~~ 147 (162)
T 3rkv_A 86 SSEVLKR--------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--------HPAAASVVAREMKIVTERRAE 147 (162)
T ss_dssp HHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhc--------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHHHH
Confidence 9999998 4888899999999999999999999999999999 77766 566677766655443
No 148
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.34 E-value=9.8e-12 Score=105.83 Aligned_cols=106 Identities=12% Similarity=0.039 Sum_probs=97.3
Q ss_pred CCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy597 286 GHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 365 (546)
Q Consensus 286 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 365 (546)
....|.....++.+|.++...|++++|+..|++++.. .|....++..+|.++...|++++|+.+|++++.+.
T Consensus 11 l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 82 (142)
T 2xcb_A 11 RGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML--------DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD 82 (142)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 4567888999999999999999999999999999987 45557889999999999999999999999999984
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy597 366 EKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIY 407 (546)
Q Consensus 366 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 407 (546)
|....+++++|.++...|++++|+.+|++++.+.
T Consensus 83 --------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 83 --------INEPRFPFHAAECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp --------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred --------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 7777889999999999999999999999999983
No 149
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.34 E-value=2e-11 Score=101.19 Aligned_cols=103 Identities=22% Similarity=0.210 Sum_probs=94.1
Q ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 330 NHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYEL 409 (546)
Q Consensus 330 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~ 409 (546)
..+....++..+|.++...|++++|+.+|++++... |....++..+|.++...|++++|+.++.+++..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--- 75 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELN--------PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--- 75 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc---
Confidence 356778899999999999999999999999999883 666888999999999999999999999999998
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 410 KLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 410 ~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
.|....++..+|.++...|++++|+.+|++++..
T Consensus 76 -----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 76 -----DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----CccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 6667889999999999999999999999999886
No 150
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.33 E-value=1.2e-11 Score=107.96 Aligned_cols=104 Identities=21% Similarity=0.277 Sum_probs=96.3
Q ss_pred CCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy597 287 HDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE 366 (546)
Q Consensus 287 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 366 (546)
...+..+..++.+|.+++..|+|++|+.+|++++.+. |....++.++|.+|...|++++|+.+|++++.+
T Consensus 5 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-- 74 (164)
T 3sz7_A 5 MAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIA--------PANPIYLSNRAAAYSASGQHEKAAEDAELATVV-- 74 (164)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred chhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--
Confidence 3567788999999999999999999999999999983 445789999999999999999999999999999
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 367 KVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406 (546)
Q Consensus 367 ~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 406 (546)
.|....+++++|.+|...|++++|+.+|++++++
T Consensus 75 ------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 75 ------DPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp ------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 4777899999999999999999999999999998
No 151
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.32 E-value=2.1e-11 Score=106.48 Aligned_cols=107 Identities=20% Similarity=0.184 Sum_probs=99.5
Q ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 330 NHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYEL 409 (546)
Q Consensus 330 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~ 409 (546)
+.+..+..+..+|.++...|+|++|+.+|++++.+. |....++.++|.+|...|++++|+.+|++++.+
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--- 74 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIA--------PANPIYLSNRAAAYSASGQHEKAAEDAELATVV--- 74 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---
Confidence 456678899999999999999999999999999984 777899999999999999999999999999999
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhc
Q psy597 410 KLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 452 (546)
Q Consensus 410 ~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~ 452 (546)
+|....+++++|.+|..+|++++|+.+|++++.+.+.+
T Consensus 75 -----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 112 (164)
T 3sz7_A 75 -----DPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNG 112 (164)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSS
T ss_pred -----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Confidence 78889999999999999999999999999999987654
No 152
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.31 E-value=1.7e-12 Score=133.42 Aligned_cols=144 Identities=19% Similarity=0.290 Sum_probs=118.9
Q ss_pred ChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCC-------CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy597 289 HPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGE-------NHAAVAATLNNLAVLYGKRGKYKEAEPLCKRA 361 (546)
Q Consensus 289 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~-------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 361 (546)
.|..+..+..+|.+++..|+|++|+..|.+++.+.+..... ..+....+++++|.+|..+|+|++|+.+|.++
T Consensus 264 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 343 (457)
T 1kt0_A 264 KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA 343 (457)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 46778899999999999999999999999999986432000 02234689999999999999999999999999
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHH-
Q psy597 362 LEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEI- 440 (546)
Q Consensus 362 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~- 440 (546)
+.+. |....+++++|.+|..+|++++|+.+|++++++ +|....++.+++.++...|++++|..
T Consensus 344 l~~~--------p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--------~P~~~~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 344 LGLD--------SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--------NPQNKAARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp HHHS--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------C----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcC--------CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9984 778899999999999999999999999999998 88888999999999999999998874
Q ss_pred HHHHHHHh
Q psy597 441 LYKQVLTR 448 (546)
Q Consensus 441 ~~~~al~~ 448 (546)
.|.+++..
T Consensus 408 ~~~~~f~k 415 (457)
T 1kt0_A 408 IYANMFKK 415 (457)
T ss_dssp HHHHC---
T ss_pred HHHHHHhh
Confidence 45555443
No 153
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.31 E-value=3.1e-11 Score=105.21 Aligned_cols=112 Identities=19% Similarity=0.100 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC----------ChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy597 332 AAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKE----------HPDVAKQLNNLALLCQNQSKYEEVERYYQ 401 (546)
Q Consensus 332 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------~~~~~~~~~~la~~~~~~g~~~eA~~~~~ 401 (546)
...+..+..+|..++..|+|++|+.+|.+++.+.......+ .|....++.++|.+|...|++++|+.+++
T Consensus 8 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~ 87 (162)
T 3rkv_A 8 LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSS 87 (162)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 34577899999999999999999999999999865432111 25667899999999999999999999999
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 402 RALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 402 ~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
+++.+ +|..+.+++.+|.+|..+|++++|+..|++++.+.|.
T Consensus 88 ~al~~--------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 88 EVLKR--------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp HHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred HHHhc--------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence 99999 8888999999999999999999999999999998544
No 154
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.30 E-value=3.7e-12 Score=122.13 Aligned_cols=174 Identities=18% Similarity=0.103 Sum_probs=135.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhH
Q psy597 213 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDV 292 (546)
Q Consensus 213 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 292 (546)
..+..+..+|..++..|+|++|+..|.+++.. .|..
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------------------------------------------~p~~ 37 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--------------------------------------------NPLV 37 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------------------------CSCC
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------------------------------------CCcc
Confidence 34678999999999999999999999999984 4556
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q psy597 293 ATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKE 372 (546)
Q Consensus 293 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 372 (546)
+.+++.+|.+|...|++++|+..|++++.+ .|....+++++|.+|...|++++|+.+|++++.+.......-
T Consensus 38 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 109 (281)
T 2c2l_A 38 AVYYTNRALCYLKMQQPEQALADCRRALEL--------DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNF 109 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhH
Confidence 788999999999999999999999999976 455578899999999999999999999999999874321100
Q ss_pred ChHH-----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q psy597 373 HPDV-----------------------AKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCY 429 (546)
Q Consensus 373 ~~~~-----------------------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y 429 (546)
.... ..+...++.+ ..|++++|+..++++++. +|........++.++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~ 179 (281)
T 2c2l_A 110 GDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRL--IAAERERELEECQRNHEG--------HEDDGHIRAQQACIE 179 (281)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHH--HHHHHHHHHTTTSGGGTT--------TSCHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHHHHHHhhhcc--------ccchhhhhhHHHHHH
Confidence 0000 0111122222 257888888888888876 666667777777777
Q ss_pred HHc-CCHHHHHHHHHHHHHh
Q psy597 430 LKQ-GKYKEAEILYKQVLTR 448 (546)
Q Consensus 430 ~~~-g~~~eA~~~~~~al~~ 448 (546)
... +.+++|..+|.++...
T Consensus 180 ~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 180 AKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHHHHHHHHhhhcc
Confidence 766 7789999999888764
No 155
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.30 E-value=9.1e-12 Score=110.24 Aligned_cols=126 Identities=21% Similarity=0.252 Sum_probs=108.8
Q ss_pred HHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Q psy597 303 YRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNN 382 (546)
Q Consensus 303 ~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 382 (546)
+...|++++|+..+++++.. .|....++..+|.+|...|++++|+.+|++++.+. |....++..
T Consensus 20 ~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~ 83 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA--------NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--------GENAELYAA 83 (177)
T ss_dssp CC-----CCCCHHHHHHHHH--------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------CSCHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHHHH
Confidence 34678999999999999987 34446789999999999999999999999999986 566788999
Q ss_pred HHHH-HHHcCCH--HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhc
Q psy597 383 LALL-CQNQSKY--EEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 452 (546)
Q Consensus 383 la~~-~~~~g~~--~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~ 452 (546)
+|.+ +...|++ ++|+.+|++++.. .|....++.++|.+|...|++++|+.+|++++...+.+
T Consensus 84 la~~l~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 84 LATVLYYQASQHMTAQTRAMIDKALAL--------DSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 9999 8899999 9999999999998 77778899999999999999999999999999986543
No 156
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.30 E-value=3.6e-11 Score=115.55 Aligned_cols=234 Identities=8% Similarity=-0.030 Sum_probs=187.2
Q ss_pred ChhhHHHhhhcCCCchHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHH
Q psy597 197 PPSQFAQQVNAGYEIPARLRTLHNLVIQYASQG--RYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVK 274 (546)
Q Consensus 197 ~~~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~ 274 (546)
...++........-+|+...+|+..+.++...| ++++++.++..++..
T Consensus 49 s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~------------------------------ 98 (306)
T 3dra_A 49 SERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD------------------------------ 98 (306)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH------------------------------
T ss_pred CHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH------------------------------
Confidence 345666666666778999999999999999999 999999999999984
Q ss_pred HHHHHHHhccCCCCChhHHHHHHHHHHHH----HHh---hcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy597 275 QAKVAQILGSGGHDHPDVATMLNILALVY----RDQ---NKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGK 347 (546)
Q Consensus 275 ~~~~~~~l~~~~~~~~~~~~~~~~la~~~----~~~---g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~ 347 (546)
+|....+|+..+.++ ... +++++++.++.+++.. +|....+|...+.+...
T Consensus 99 --------------nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~--------~pkny~aW~~R~~vl~~ 156 (306)
T 3dra_A 99 --------------NEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSS--------DPKNHHVWSYRKWLVDT 156 (306)
T ss_dssp --------------CTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHH
T ss_pred --------------CcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHH
Confidence 566677888888888 666 7899999999999987 56668899999999999
Q ss_pred cCCHH--HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHHHHHhcCCCChHHH
Q psy597 348 RGKYK--EAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSK------YEEVERYYQRALEIYELKLGPDDSNVA 419 (546)
Q Consensus 348 ~g~~~--~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~------~~eA~~~~~~al~~~~~~~~~~~~~~~ 419 (546)
.|.++ +++.++.++++. +|....+|...+.+....|. +++++.++.+++.+ +|...
T Consensus 157 l~~~~~~~EL~~~~~~i~~--------d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~--------~p~n~ 220 (306)
T 3dra_A 157 FDLHNDAKELSFVDKVIDT--------DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK--------CPQNP 220 (306)
T ss_dssp TTCTTCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH--------CSSCH
T ss_pred hcccChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh--------CCCCc
Confidence 99999 999999999988 58889999999999999988 99999999999999 89999
Q ss_pred HHHHHHHHHHHHcCCHHHHH-HHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHH-HHHHHcCCCCHH
Q psy597 420 KTKNNLASCYLKQGKYKEAE-ILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALE-IYELKLGPDDSN 497 (546)
Q Consensus 420 ~~~~~La~~y~~~g~~~eA~-~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~-~~~~~~~~~~~~ 497 (546)
.+++.++.++...|+..+++ .++.+++..... ...........+.++...|+..+|...|+.+.. + +|.
T Consensus 221 SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~--------Dpi 291 (306)
T 3dra_A 221 STWNYLLGIHERFDRSITQLEEFSLQFVDLEKD-QVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKY--------NPI 291 (306)
T ss_dssp HHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGT-EESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--------CGG
T ss_pred cHHHHHHHHHHhcCCChHHHHHHHHHHHhccCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcc--------ChH
Confidence 99999999999999865544 455555543210 111112233334446677888888888888775 3 777
Q ss_pred HHHHHHHHHH
Q psy597 498 VAKTKNNLAS 507 (546)
Q Consensus 498 ~~~~~~~La~ 507 (546)
....+...+.
T Consensus 292 r~~yW~~~~~ 301 (306)
T 3dra_A 292 RSNFWDYQIS 301 (306)
T ss_dssp GHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7777666554
No 157
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.29 E-value=4.7e-12 Score=119.01 Aligned_cols=210 Identities=14% Similarity=0.006 Sum_probs=160.9
Q ss_pred CChhhHHHhhhcCCCchHHHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhH-HHhhHHHHHhhhh
Q psy597 196 TPPSQFAQQVNAGYEIPARLRTLHNL-------VIQYASQGRYEVAVPLCKQALEDLEKTSGKYEA-AETLEDCALRSRK 267 (546)
Q Consensus 196 ~~~~~~~~~~~~~~~~p~~~~~~~~l-------g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-a~~~~~~~l~~~~ 267 (546)
.+..+...+......+|..+.+|..+ +.++...+++.+++..+.+++.+.+...+.... .-.+
T Consensus 21 d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y--------- 91 (282)
T 4f3v_A 21 SEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLY--------- 91 (282)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTT---------
T ss_pred CHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcc---------
Confidence 34556667777778889999999999 899999999999999999998865554311000 0000
Q ss_pred hhHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy597 268 ESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGK 347 (546)
Q Consensus 268 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~ 347 (546)
......-.....+...++.++...|+|++|.+.|..++.. .|... ..+.+|.++..
T Consensus 92 ---------------~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--------~p~~~-~~~~~a~l~~~ 147 (282)
T 4f3v_A 92 ---------------GDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--------GSEHL-VAWMKAVVYGA 147 (282)
T ss_dssp ---------------CCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--------TCHHH-HHHHHHHHHHH
T ss_pred ---------------cccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCchH-HHHHHHHHHHH
Confidence 0000001123556777899999999999999999888753 45555 88999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChH-HHHHHHHH
Q psy597 348 RGKYKEAEPLCKRALEIREKVLGKEHPD-VAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSN-VAKTKNNL 425 (546)
Q Consensus 348 ~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~-~~~~~~~L 425 (546)
.|+|++|+.+|+++... + +|. ...+++++|.++..+|++++|+.+|++++.. +..|. ...+.+++
T Consensus 148 ~~r~~dA~~~l~~a~~~------~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g------~~~P~~~~da~~~~ 214 (282)
T 4f3v_A 148 AERWTDVIDQVKSAGKW------P-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDS------PAGEACARAIAWYL 214 (282)
T ss_dssp TTCHHHHHHHHTTGGGC------S-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS------TTTTTTHHHHHHHH
T ss_pred cCCHHHHHHHHHHhhcc------C-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcC------CCCccccHHHHHHH
Confidence 99999999999877554 1 233 3568999999999999999999999999742 32255 77899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 426 ASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 426 a~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
|.++..+|+.++|...|++++...|.
T Consensus 215 glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 215 AMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999997553
No 158
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.28 E-value=9.6e-12 Score=110.09 Aligned_cols=126 Identities=20% Similarity=0.239 Sum_probs=104.4
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Q psy597 345 YGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNN 424 (546)
Q Consensus 345 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~ 424 (546)
+...|++++|+..+++++... |....++..+|.+|...|++++|+.+|++++.+ .|....++..
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~ 83 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN--------PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--------RGENAELYAA 83 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC--------CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------HCSCHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHH
Confidence 346789999999999999883 677789999999999999999999999999998 5556778999
Q ss_pred HHHH-HHHcCCH--HHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHH
Q psy597 425 LASC-YLKQGKY--KEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKT 501 (546)
Q Consensus 425 La~~-y~~~g~~--~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~ 501 (546)
+|.+ |...|++ ++|+.+|++++.. .|....+
T Consensus 84 la~~l~~~~~~~~~~~A~~~~~~al~~----------------------------------------------~p~~~~~ 117 (177)
T 2e2e_A 84 LATVLYYQASQHMTAQTRAMIDKALAL----------------------------------------------DSNEITA 117 (177)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHHH----------------------------------------------CTTCHHH
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHh----------------------------------------------CCCcHHH
Confidence 9999 8899998 9999999998875 4445667
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Q psy597 502 KNNLASCYLKQGKYKEAEILYKQVLTRAHER 532 (546)
Q Consensus 502 ~~~La~~y~~~g~~~~A~~~~~~al~~~~~~ 532 (546)
+..+|.+|...|++++|+.+|+++++..|..
T Consensus 118 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 118 LMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 8889999999999999999999999877654
No 159
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.28 E-value=8.9e-11 Score=96.35 Aligned_cols=120 Identities=36% Similarity=0.482 Sum_probs=105.5
Q ss_pred hhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q psy597 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 369 (546)
Q Consensus 290 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 369 (546)
.....+++.+|.++...|++++|+.+|++++... |....++..+|.++...|++++|+.++++++...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---- 73 (125)
T 1na0_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD---- 73 (125)
T ss_dssp -CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC----
Confidence 3457789999999999999999999999999873 3336789999999999999999999999999873
Q ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC
Q psy597 370 GKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQG 433 (546)
Q Consensus 370 ~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g 433 (546)
|....++..+|.++...|++++|+.+|++++.+ .|....++..+|.++...|
T Consensus 74 ----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 74 ----PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp ----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHC
T ss_pred ----CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHhcc
Confidence 566778999999999999999999999999998 7777888999999987765
No 160
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.26 E-value=4.5e-11 Score=100.57 Aligned_cols=105 Identities=27% Similarity=0.197 Sum_probs=94.6
Q ss_pred ChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy597 289 HPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 368 (546)
Q Consensus 289 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 368 (546)
.+..+..++.+|.++...|++++|+.+|.+++... |....++.++|.++...|++++|+.+|++++.+.
T Consensus 5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--- 73 (137)
T 3q49_B 5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--------PLVAVYYTNRALCYLKMQQPEQALADCRRALELD--- 73 (137)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--------cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---
Confidence 45567889999999999999999999999999983 4447789999999999999999999999999983
Q ss_pred cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 369 LGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYEL 409 (546)
Q Consensus 369 ~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~ 409 (546)
|....++.++|.++...|++++|+.+|++++.+...
T Consensus 74 -----p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 74 -----GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp -----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -----chhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 777889999999999999999999999999998433
No 161
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.26 E-value=1.2e-10 Score=95.65 Aligned_cols=99 Identities=39% Similarity=0.562 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 334 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGP 413 (546)
Q Consensus 334 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~ 413 (546)
...++..+|.++...|++++|+.+|.+++... |....++..+|.++...|++++|+.+|++++..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------- 72 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL------- 72 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-------
Confidence 36789999999999999999999999999873 566778999999999999999999999999988
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 414 DDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 414 ~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
.|....++..+|.+|...|++++|+.+|++++..
T Consensus 73 -~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 73 -DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 5666788999999999999999999999999876
No 162
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.26 E-value=6.8e-10 Score=122.84 Aligned_cols=251 Identities=14% Similarity=0.104 Sum_probs=150.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------HHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhcc
Q psy597 213 ARLRTLHNLVIQYASQGRYEVAVPLCKQALED--------LEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGS 284 (546)
Q Consensus 213 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~ 284 (546)
..+.+|+.+|.++...|++++|+..|.++-.. +-...|+++.+..++..+...
T Consensus 1103 n~p~vWsqLAKAql~~G~~kEAIdsYiKAdD~say~eVa~~~~~lGkyEEAIeyL~mArk~------------------- 1163 (1630)
T 1xi4_A 1103 NEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKK------------------- 1163 (1630)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHhcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------------------
Confidence 34678999999999999999999999775110 000011222222222211110
Q ss_pred CCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 285 GGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 364 (546)
Q Consensus 285 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 364 (546)
..+.. +-..+|.+|.+.+++++ ++.|.+ .+. ...+..+|..+...|+|++|..+|.++
T Consensus 1164 ---~~e~~--Idt~LafaYAKl~rlee-le~fI~------------~~n-~ad~~~iGd~le~eg~YeeA~~~Y~kA--- 1221 (1630)
T 1xi4_A 1164 ---ARESY--VETELIFALAKTNRLAE-LEEFIN------------GPN-NAHIQQVGDRCYDEKMYDAAKLLYNNV--- 1221 (1630)
T ss_pred ---ccccc--ccHHHHHHHHhhcCHHH-HHHHHh------------CCC-HHHHHHHHHHHHhcCCHHHHHHHHHhh---
Confidence 00000 01125566666665553 222211 112 235667999999999999999999985
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-----------------HhcCCCChHHHHHHHHHHH
Q psy597 365 REKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYE-----------------LKLGPDDSNVAKTKNNLAS 427 (546)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~-----------------~~~~~~~~~~~~~~~~La~ 427 (546)
..|..+|.++...|++++|++.+++|....- ...+-.....+..+..++.
T Consensus 1222 -------------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~ 1288 (1630)
T 1xi4_A 1222 -------------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELIN 1288 (1630)
T ss_pred -------------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHH
Confidence 2567899999999999999999998854310 0000001113345567888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHH--HHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q psy597 428 CYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQ--DRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNL 505 (546)
Q Consensus 428 ~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~L 505 (546)
.|...|.|++|+.+++.++.+.+.+. ......+.. ...-++..++...|...+.+-.-. ..-.....|..+
T Consensus 1289 yYe~~G~feEAI~LlE~aL~LeraH~----gmftELaiLyaKy~peklmEhlk~f~~rini~k~~---r~~e~~~lW~el 1361 (1630)
T 1xi4_A 1289 YYQDRGYFEELITMLEAALGLERAHM----GMFTELAILYSKFKPQKMREHLELFWSRVNIPKVL---RAAEQAHLWAEL 1361 (1630)
T ss_pred HHHHcCCHHHHHHHHHHHhccChhHh----HHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHh---HHHHHHHHHHHH
Confidence 99999999999999999987642210 111111222 233455556666666555441100 012567788899
Q ss_pred HHHHHHcCCHHHHHHHHHH
Q psy597 506 ASCYLKQGKYKEAEILYKQ 524 (546)
Q Consensus 506 a~~y~~~g~~~~A~~~~~~ 524 (546)
..+|.+-|+++.|....-.
T Consensus 1362 v~LY~~~~e~dnA~~tm~~ 1380 (1630)
T 1xi4_A 1362 VFLYDKYEEYDNAIITMMN 1380 (1630)
T ss_pred HHHHHhcccHHHHHHHHHh
Confidence 9999999999999854443
No 163
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.25 E-value=1.6e-12 Score=129.26 Aligned_cols=206 Identities=13% Similarity=0.138 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHH
Q psy597 215 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVAT 294 (546)
Q Consensus 215 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 294 (546)
+.+|..+|.++...|++++|+..|.++-. ..
T Consensus 32 ~~vWs~La~A~l~~g~~~eAIdsfika~D-------------------------------------------------~~ 62 (449)
T 1b89_A 32 PAVWSQLAKAQLQKGMVKEAIDSYIKADD-------------------------------------------------PS 62 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHcCCC-------------------------------------------------HH
Confidence 35999999999999999999999965421 22
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q psy597 295 MLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHP 374 (546)
Q Consensus 295 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 374 (546)
.+...+..+...|++++|+.+++.+.+.. +. +.+...++.+|.+.|++.++..++.. |
T Consensus 63 ~y~~V~~~ae~~g~~EeAi~yl~~ark~~--------~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~-------------p 120 (449)
T 1b89_A 63 SYMEVVQAANTSGNWEELVKYLQMARKKA--------RE-SYVETELIFALAKTNRLAELEEFING-------------P 120 (449)
T ss_dssp -------------------------------------------------------CHHHHTTTTTC-------------C
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhC--------cc-chhHHHHHHHHHHhCCHHHHHHHHcC-------------C
Confidence 45666667777888888888888777541 11 45566788888888888887777641 2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhccc
Q psy597 375 DVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREF 454 (546)
Q Consensus 375 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~ 454 (546)
.. .++.++|..|...|+|++|..+|.++ ..+..+|.++.++|+|++|++.|+++...
T Consensus 121 n~-~a~~~IGd~~~~~g~yeeA~~~Y~~a----------------~n~~~LA~~L~~Lg~yq~AVea~~KA~~~------ 177 (449)
T 1b89_A 121 NN-AHIQQVGDRCYDEKMYDAAKLLYNNV----------------SNFGRLASTLVHLGEYQAAVDGARKANST------ 177 (449)
T ss_dssp -----------------CTTTHHHHHHHT----------------TCHHHHHHHHHTTTCHHHHHHHHHHHTCH------
T ss_pred cH-HHHHHHHHHHHHcCCHHHHHHHHHHh----------------hhHHHHHHHHHHhccHHHHHHHHHHcCCc------
Confidence 22 37888888888888888888888755 24677888888888888888888887321
Q ss_pred CcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q psy597 455 GACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRA 529 (546)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~ 529 (546)
..+......+...|++..|..+... +. .+|.. ...++.+|.+.|++++|+.+++.++.+.
T Consensus 178 ---~~Wk~v~~aCv~~~ef~lA~~~~l~-L~--------~~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~le 237 (449)
T 1b89_A 178 ---RTWKEVCFACVDGKEFRLAQMCGLH-IV--------VHADE---LEELINYYQDRGYFEELITMLEAALGLE 237 (449)
T ss_dssp ---HHHHHHHHHHHHTTCHHHHHHTTTT-TT--------TCHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTST
T ss_pred ---hhHHHHHHHHHHcCcHHHHHHHHHH-HH--------hCHhh---HHHHHHHHHHCCCHHHHHHHHHHHhCCc
Confidence 2223334456677777777544332 11 14444 3357778888888888888888887654
No 164
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.23 E-value=1.4e-10 Score=96.18 Aligned_cols=125 Identities=15% Similarity=0.245 Sum_probs=102.3
Q ss_pred hHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q psy597 291 DVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 370 (546)
Q Consensus 291 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 370 (546)
..+..++.+|.++...|++++|+.+|.+++... |....++..+|.++...|++++|+.++++++...... +
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~ 72 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELD--------PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN-R 72 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS-T
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc-c
Confidence 456789999999999999999999999999873 3346789999999999999999999999999987432 1
Q ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC
Q psy597 371 KEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQG 433 (546)
Q Consensus 371 ~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g 433 (546)
.+.+....++.++|.++...|++++|+.+|++++.+ .| .......++.+....+
T Consensus 73 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~-~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 73 EDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE--------HR-TPDVLKKCQQAEKILK 126 (131)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CC-CHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CC-CHHHHHHHHHHHHHHH
Confidence 222333889999999999999999999999999997 44 2456666776665443
No 165
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.23 E-value=4.7e-11 Score=98.51 Aligned_cols=100 Identities=13% Similarity=0.017 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q psy597 336 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDD 415 (546)
Q Consensus 336 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~ 415 (546)
..++.+|..+...|++++|+..|++++.. .|....+++.+|.++...|++++|+.+|++++++ +
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~ 81 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--------D 81 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------C
Confidence 35788999999999999999999999998 4888999999999999999999999999999999 8
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 416 SNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 416 ~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
|....++.++|.+|...|++++|+..|++++...|.
T Consensus 82 P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 82 PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 888889999999999999999999999999987554
No 166
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.23 E-value=8.4e-11 Score=98.88 Aligned_cols=105 Identities=28% Similarity=0.260 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q psy597 332 AAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKL 411 (546)
Q Consensus 332 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~ 411 (546)
+..+..+..+|.++...|++++|+.+|.+++... |....++.++|.++...|++++|+.+|++++.+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----- 72 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--------PLVAVYYTNRALCYLKMQQPEQALADCRRALEL----- 72 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--------cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----
Confidence 3447789999999999999999999999999983 777889999999999999999999999999998
Q ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhc
Q psy597 412 GPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 452 (546)
Q Consensus 412 ~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~ 452 (546)
+|....++.++|.+|...|++++|+..|++++...+..
T Consensus 73 ---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 110 (137)
T 3q49_B 73 ---DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 110 (137)
T ss_dssp ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred ---CchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhH
Confidence 77888899999999999999999999999999987763
No 167
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.22 E-value=2.5e-10 Score=110.86 Aligned_cols=240 Identities=10% Similarity=0.051 Sum_probs=185.0
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCCh
Q psy597 211 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHP 290 (546)
Q Consensus 211 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 290 (546)
.|....++..+.......+..++|+.++.+++.+ .|
T Consensus 50 ~~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~--------------------------------------------nP 85 (349)
T 3q7a_A 50 SEEYKDAMDYFRAIAAKEEKSERALELTEIIVRM--------------------------------------------NP 85 (349)
T ss_dssp CHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHH--------------------------------------------CT
T ss_pred CHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh--------------------------------------------Cc
Confidence 3666777777777777777888999999999984 57
Q ss_pred hHHHHHHHHHHHHHHhh-cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHHHHH
Q psy597 291 DVATMLNILALVYRDQN-KYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKR-G-KYKEAEPLCKRALEIREK 367 (546)
Q Consensus 291 ~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~-g-~~~~A~~~~~~al~~~~~ 367 (546)
....+|+..+.++...| .+++++..+..++.. +|....+|+..+.++... + ++++++.++.++++.
T Consensus 86 ~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~--------nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~--- 154 (349)
T 3q7a_A 86 AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ--------NLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLP--- 154 (349)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT--------TCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSS---
T ss_pred hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh---
Confidence 77889999999999999 599999999999976 455688999999999998 8 999999999999977
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCC-----
Q psy597 368 VLGKEHPDVAKQLNNLALLCQNQSKYE--------EVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGK----- 434 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~~~g~~~--------eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~----- 434 (546)
+|....+|...+.+....|.++ +++.++.++++. +|.+..++++.+.++...++
T Consensus 155 -----dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--------dp~N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 155 -----DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--------DGRNNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp -----CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHTTSTTCCCCH
T ss_pred -----CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhccccccch
Confidence 5888999999999999998888 999999999998 89999999999999999987
Q ss_pred --HHHHHHHHHHHHHhhhhcccCcccCCChhhHHH-----HhhchhhH------------HHH-HHHHHHHHHHHHcCC-
Q psy597 435 --YKEAEILYKQVLTRAHEREFGACDGDNKPIWQD-----RQKNKAKN------------REK-YYQRALEIYELKLGP- 493 (546)
Q Consensus 435 --~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~------------A~~-~~~~Al~~~~~~~~~- 493 (546)
++++++++.+++...|. +..+|.+ ...|.... .+. .+.............
T Consensus 222 ~~~~eELe~~~~aI~~~P~---------n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (349)
T 3q7a_A 222 RSLQDELIYILKSIHLIPH---------NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDP 292 (349)
T ss_dssp HHHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-C
T ss_pred HHHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcc
Confidence 79999999999998554 3344432 22222100 000 011111111111111
Q ss_pred ----CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 494 ----DDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 527 (546)
Q Consensus 494 ----~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~ 527 (546)
..+....++..|+.+|...|+.++|.++++...+
T Consensus 293 ~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 293 LPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 1135667889999999999999999999998653
No 168
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.21 E-value=1.5e-10 Score=115.22 Aligned_cols=135 Identities=19% Similarity=0.167 Sum_probs=118.4
Q ss_pred hHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy597 291 DVATMLNILALVYRDQNKYKEAANLLNDALTIREKTL--------GENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRAL 362 (546)
Q Consensus 291 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--------g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 362 (546)
..+..+..+|..++..|+|++|+..|++++.+.+... ....|....++.++|.+|...|++++|+.+|++++
T Consensus 221 ~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 300 (370)
T 1ihg_A 221 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL 300 (370)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 3567799999999999999999999999999655420 01356778999999999999999999999999999
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHH
Q psy597 363 EIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEIL 441 (546)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~ 441 (546)
++ .|....+++++|.+|...|++++|+.+|++++++ .|....++..++.++...++++++...
T Consensus 301 ~~--------~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--------~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 301 EI--------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--------APEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp TT--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred Hh--------CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87 4778899999999999999999999999999999 777788899999999999988887643
No 169
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.21 E-value=2.1e-10 Score=95.24 Aligned_cols=102 Identities=20% Similarity=0.160 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q psy597 295 MLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHP 374 (546)
Q Consensus 295 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 374 (546)
.++.+|.++...|++++|+..|++++... ++++....+++.+|.++...|++++|+.+|++++... ++++
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-----p~~~ 73 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELY-----PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-----PTHD 73 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTST
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC-----CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-----CCCc
Confidence 47889999999999999999999999874 5556666899999999999999999999999999984 3344
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 375 DVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406 (546)
Q Consensus 375 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 406 (546)
....+++.+|.++...|++++|+.+|++++..
T Consensus 74 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 74 KAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45889999999999999999999999999998
No 170
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.20 E-value=7.7e-11 Score=97.24 Aligned_cols=100 Identities=11% Similarity=0.008 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcc
Q psy597 378 KQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGAC 457 (546)
Q Consensus 378 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~ 457 (546)
..++.+|..+...|++++|+..|++++.. +|..+.+++.+|.++...|++++|+..|++++.+
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------- 80 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--------- 80 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------
Confidence 35788999999999999999999999999 8888999999999999999999999999999986
Q ss_pred cCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q psy597 458 DGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 531 (546)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~ 531 (546)
.|....++..+|.+|...|++++|+.+|++++++.|.
T Consensus 81 -------------------------------------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 81 -------------------------------------DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp -------------------------------------CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred -------------------------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 5666778899999999999999999999999987764
No 171
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.20 E-value=2.1e-10 Score=93.15 Aligned_cols=114 Identities=18% Similarity=0.260 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 371 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 371 (546)
.+..++.+|..+...|++++|+..|++++... |....++..+|.++...|++++|+.++++++...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------ 68 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD--------PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK------ 68 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--------CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC------
Confidence 35678999999999999999999999999873 3346789999999999999999999999999983
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q psy597 372 EHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCY 429 (546)
Q Consensus 372 ~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y 429 (546)
|....++.++|.++...|++++|+.+|+++++. .|....++..++.+.
T Consensus 69 --~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 69 --PDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH--------EANNPQLKEGLQNME 116 (118)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CTTCHHHHHHHHHHH
T ss_pred --cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc--------CCCCHHHHHHHHHhh
Confidence 667889999999999999999999999999987 666677777777764
No 172
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.19 E-value=2.9e-11 Score=119.13 Aligned_cols=140 Identities=14% Similarity=0.082 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHH-----------------HHHHHHHHHHHHcCCHH
Q psy597 332 AAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVA-----------------KQLNNLALLCQNQSKYE 394 (546)
Q Consensus 332 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-----------------~~~~~la~~~~~~g~~~ 394 (546)
+..+..+..+|..++..|+|++|+.+|.+++.+. |... .+++++|.+|...|+++
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--------p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~ 247 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--------GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYD 247 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--------CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--------ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 3447789999999999999999999999999884 4433 48999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhh
Q psy597 395 EVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAK 474 (546)
Q Consensus 395 eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (546)
+|+.+|++++.+ +|....+++++|.+|..+|++++|+..|++++.+
T Consensus 248 ~A~~~~~~al~~--------~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l-------------------------- 293 (338)
T 2if4_A 248 EAIGHCNIVLTE--------EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY-------------------------- 293 (338)
T ss_dssp HHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------------------------
Confidence 999999999998 7888899999999999999999999999999876
Q ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHhhhhc
Q psy597 475 NREKYYQRALEIYELKLGPDDSNVAKTKNNLASC-YLKQGKYKEAEILYKQVLTRAHERE 533 (546)
Q Consensus 475 ~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~-y~~~g~~~~A~~~~~~al~~~~~~~ 533 (546)
.|....++..++.+ ....+..+++...|.+++...|.+.
T Consensus 294 --------------------~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 294 --------------------APDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp ------------------------------------------------------------
T ss_pred --------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Confidence 34445566667776 3445677788888888888776544
No 173
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.18 E-value=4.4e-12 Score=130.98 Aligned_cols=180 Identities=19% Similarity=0.156 Sum_probs=134.7
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChh
Q psy597 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPD 291 (546)
Q Consensus 212 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (546)
+..+..+..+|..+...|+|++|+.+|+++++. .|.
T Consensus 3 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~--------------------------------------------~p~ 38 (477)
T 1wao_1 3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIEL--------------------------------------------NPS 38 (477)
T ss_dssp HHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHH--------------------------------------------CTT
T ss_pred HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------------------------------------------CCc
Confidence 566777888999999999999999999999984 455
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 371 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 371 (546)
.+.++..+|.+|...|++++|+.+|++++++ +|....+++++|.+|...|++++|+.+|++++++.
T Consensus 39 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--------~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~------ 104 (477)
T 1wao_1 39 NAIYYGNRSLAYLRTECYGYALGDATRAIEL--------DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVK------ 104 (477)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS------
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------
Confidence 6788999999999999999999999999987 45557899999999999999999999999999983
Q ss_pred CChHHHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHHHHHHhcCCCChH---HHHHHHHHHHHHHHcCCH
Q psy597 372 EHPDVAKQLNNLALL--CQNQSKYEEVERYYQ-----------RALEIYELKLGPDDSN---VAKTKNNLASCYLKQGKY 435 (546)
Q Consensus 372 ~~~~~~~~~~~la~~--~~~~g~~~eA~~~~~-----------~al~~~~~~~~~~~~~---~~~~~~~La~~y~~~g~~ 435 (546)
|....++.+++.+ +...|++++|+..++ +++.+.....++..+. .......+...+...+..
T Consensus 105 --p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~itl~~l~~lie~l~~~~~l 182 (477)
T 1wao_1 105 --PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQKKL 182 (477)
T ss_dssp --TTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSCCCGGGSCCHHHHHHHHHHHHTCCCC
T ss_pred --CCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccccccccccccccHHHHHHHHHHHHcCCCC
Confidence 5556677788887 888999999999999 6665533333333332 223333444555444443
Q ss_pred --HHHHHHHHHHHHhhhh
Q psy597 436 --KEAEILYKQVLTRAHE 451 (546)
Q Consensus 436 --~eA~~~~~~al~~~~~ 451 (546)
..+..++.++..+...
T Consensus 183 ~e~~v~~L~~~a~eil~~ 200 (477)
T 1wao_1 183 HRKCAYQILVQVKEVLSK 200 (477)
T ss_dssp CHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHcc
Confidence 4455577777666554
No 174
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.18 E-value=6.2e-10 Score=92.37 Aligned_cols=104 Identities=21% Similarity=0.182 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHH
Q psy597 216 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATM 295 (546)
Q Consensus 216 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 295 (546)
..++.+|.+++..|+|++|+..|+++++. .++++....+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----------------------------------------~p~~~~~~~~ 41 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLEL-----------------------------------------YPNGVYTPNA 41 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------------------------------CSSSTTHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----------------------------------------CCCCcccHHH
Confidence 35788999999999999999999999885 4456666789
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy597 296 LNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 365 (546)
Q Consensus 296 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 365 (546)
++.+|.++...|++++|+.+|++++... ++++....+++.+|.++...|++++|+.+|++++...
T Consensus 42 ~~~lg~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 42 LYWLGESYYATRNFQLAEAQFRDLVSRY-----PTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHC-----CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999874 4455557889999999999999999999999999885
No 175
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.18 E-value=7e-10 Score=107.20 Aligned_cols=230 Identities=9% Similarity=-0.055 Sum_probs=179.5
Q ss_pred hhhHHHhhhcCCCchHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhh
Q psy597 198 PSQFAQQVNAGYEIPARLRTLHNLVIQYASQGR----------YEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRK 267 (546)
Q Consensus 198 ~~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~ 267 (546)
..++.........+|....+|+..+.+....|. +++++.++..++.
T Consensus 47 ~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~------------------------ 102 (331)
T 3dss_A 47 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR------------------------ 102 (331)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH------------------------
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHH------------------------
Confidence 345666666777788899999999999887766 5667777777766
Q ss_pred hhHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHhhc--HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy597 268 ESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNK--YKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLY 345 (546)
Q Consensus 268 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~ 345 (546)
.+|....+|+..+.++...|+ +++++.++.+++.. +|....+|...+.+.
T Consensus 103 --------------------~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~--------dprNy~AW~~R~~vl 154 (331)
T 3dss_A 103 --------------------VNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--------DERNFHCWDYRRFVA 154 (331)
T ss_dssp --------------------HCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHH
T ss_pred --------------------hCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHH
Confidence 357778889999999999884 89999999999988 566688999999999
Q ss_pred HHcCC-HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHHHHHh
Q psy597 346 GKRGK-YKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQ--------------SKYEEVERYYQRALEIYELK 410 (546)
Q Consensus 346 ~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--------------g~~~eA~~~~~~al~~~~~~ 410 (546)
...|. +++++.++.++++. +|....+|++.+.++... +.+++++.++.+++.+
T Consensus 155 ~~l~~~~~eel~~~~~~I~~--------~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~---- 222 (331)
T 3dss_A 155 AQAAVAPAEELAFTDSLITR--------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT---- 222 (331)
T ss_dssp HHTTCCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH----
T ss_pred HHhCcCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh----
Confidence 99999 69999999999988 588899999999998887 5689999999999999
Q ss_pred cCCCChHHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHH--H---hhchhh
Q psy597 411 LGPDDSNVAKTKNNLASCYLKQ-----------GKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQD--R---QKNKAK 474 (546)
Q Consensus 411 ~~~~~~~~~~~~~~La~~y~~~-----------g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~ 474 (546)
+|....+|+.+..++... +.++++++.+.+++...|+... .....+. . ..+...
T Consensus 223 ----~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w------~l~~~~~~~~~~~~~~~~~ 292 (331)
T 3dss_A 223 ----DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKW------CLLTIILLMRALDPLLYEK 292 (331)
T ss_dssp ----STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHH------HHHHHHHHHHHHCTTTTHH
T ss_pred ----CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccch------HHHHHHHHHHhhcccccHH
Confidence 888888898776666655 4588999999999998775421 1111111 1 234455
Q ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q psy597 475 NREKYYQRALEIYELKLGPDDSNVAKTKNNLASCY 509 (546)
Q Consensus 475 ~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y 509 (546)
+....+.+.+++ +|.....|..++.-+
T Consensus 293 ~~~~~l~~l~~~--------Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 293 ETLQYFSTLKAV--------DPMRAAYLDDLRSKF 319 (331)
T ss_dssp HHHHHHHHHHHH--------CGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--------CcchhhHHHHHHHHH
Confidence 666777777776 777776666665544
No 176
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.18 E-value=5.5e-10 Score=90.55 Aligned_cols=99 Identities=13% Similarity=0.152 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q psy597 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPD 414 (546)
Q Consensus 335 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~ 414 (546)
+..+..+|.++...|++++|+.+|++++... |....++..+|.++...|++++|+.++++++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-------- 67 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD--------PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL-------- 67 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--------CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--------
Confidence 5678999999999999999999999999883 666889999999999999999999999999998
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q psy597 415 DSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRA 449 (546)
Q Consensus 415 ~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~ 449 (546)
.|....++.++|.++...|++++|..+|++++...
T Consensus 68 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 68 KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 67778899999999999999999999999999863
No 177
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.17 E-value=2.8e-10 Score=113.27 Aligned_cols=106 Identities=19% Similarity=0.136 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc--------CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL--------GKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406 (546)
Q Consensus 335 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 406 (546)
+..+..+|..+...|+|++|+.+|++++++..... ....|....++.++|.+|..+|++++|+.+|++++++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 56789999999999999999999999999654310 0024778899999999999999999999999999998
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 407 YELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
+|..+.+++++|.+|..+|++++|+..|++++++
T Consensus 303 --------~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 303 --------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp --------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --------CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 7888999999999999999999999999999986
No 178
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=1.8e-10 Score=97.93 Aligned_cols=122 Identities=16% Similarity=0.072 Sum_probs=105.0
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
..+..+..++.+|..+...|++++|+.+|++++... ++++....++.++|.+|...|++++|+.+|++++...
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-----~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-- 95 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLD-----ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-- 95 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC-----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc-----ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--
Confidence 345678889999999999999999999999999763 3344458899999999999999999999999999883
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q psy597 368 VLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYL 430 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~ 430 (546)
|....++.++|.++...|++++|+.+|++++.+ .|....++..++.+..
T Consensus 96 ------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 96 ------GGDVKALYRRSQALEKLGRLDQAVLDLQRCVSL--------EPKNKVFQEALRNISG 144 (148)
T ss_dssp ------SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHC
T ss_pred ------ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHh
Confidence 666888999999999999999999999999998 6666666777766643
No 179
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.17 E-value=3.6e-11 Score=118.46 Aligned_cols=147 Identities=15% Similarity=0.125 Sum_probs=91.1
Q ss_pred hhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcC-CC--------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy597 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLG-EN--------HAAVAATLNNLAVLYGKRGKYKEAEPLCKR 360 (546)
Q Consensus 290 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g-~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 360 (546)
+..+..+..+|..++..|+|++|+..|.+++.+.+.... .. ......+++++|.+|...|+|++|+.+|++
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~ 255 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI 255 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 456788999999999999999999999999988422100 00 000114899999999999999999999999
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-HHHcCCHHHHH
Q psy597 361 ALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASC-YLKQGKYKEAE 439 (546)
Q Consensus 361 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~-y~~~g~~~eA~ 439 (546)
++.+ +|....+++++|.+|...|++++|+.+|++++++ .|....++.+++.+ ....+..+++.
T Consensus 256 al~~--------~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--------~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 256 VLTE--------EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--------APDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------------
T ss_pred HHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998 4778899999999999999999999999999998 78888899999988 44567788899
Q ss_pred HHHHHHHHhhhhc
Q psy597 440 ILYKQVLTRAHER 452 (546)
Q Consensus 440 ~~~~~al~~~~~~ 452 (546)
..|.+++...+.+
T Consensus 320 ~~~~~~l~~~p~~ 332 (338)
T 2if4_A 320 EMYKGIFKGKDEG 332 (338)
T ss_dssp -------------
T ss_pred HHHHHhhCCCCCC
Confidence 9999999876654
No 180
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.16 E-value=3.7e-12 Score=131.60 Aligned_cols=130 Identities=19% Similarity=0.209 Sum_probs=112.6
Q ss_pred hhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q psy597 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 369 (546)
Q Consensus 290 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 369 (546)
+..+..+..+|.++...|++++|+.+|++++++ .|....++.++|.+|...|++++|+.+|++++++
T Consensus 3 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l----- 69 (477)
T 1wao_1 3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL----- 69 (477)
T ss_dssp HHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-----
T ss_pred HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----
Confidence 445666788899999999999999999999998 4555889999999999999999999999999998
Q ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH--HHHcCCHHHHHHHHH
Q psy597 370 GKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASC--YLKQGKYKEAEILYK 443 (546)
Q Consensus 370 ~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~--y~~~g~~~eA~~~~~ 443 (546)
+|....+++++|.+|..+|++++|+.+|++++++ .|....++.+++.+ +..+|++++|+..++
T Consensus 70 ---~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 70 ---DKKYIKGYYRRAASNMALGKFRAALRDYETVVKV--------KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp ---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred ---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 4778889999999999999999999999999998 66666778888888 889999999999999
No 181
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.16 E-value=3.4e-10 Score=93.75 Aligned_cols=107 Identities=21% Similarity=0.302 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 334 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGP 413 (546)
Q Consensus 334 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~ 413 (546)
.+.++..+|.++...|++++|+.+|.+++... |....++.++|.++...|++++|+.+|++++...... ++
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~ 73 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELD--------PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN-RE 73 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS-TT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc-ch
Confidence 46789999999999999999999999999883 6667889999999999999999999999999985432 12
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q psy597 414 DDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRA 449 (546)
Q Consensus 414 ~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~ 449 (546)
+.+....++.++|.+|...|++++|+.+|++++...
T Consensus 74 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 74 DYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 223338899999999999999999999999999863
No 182
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=6.5e-10 Score=94.44 Aligned_cols=121 Identities=17% Similarity=0.101 Sum_probs=101.1
Q ss_pred CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCC
Q psy597 210 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDH 289 (546)
Q Consensus 210 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 289 (546)
..|..+..++.+|..++..|+|++|+.+|+++++. .+++
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----------------------------------------~~~~ 61 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGL-----------------------------------------DATP 61 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS-----------------------------------------CCCH
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----------------------------------------cccc
Confidence 34567789999999999999999999999999873 2233
Q ss_pred hhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q psy597 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 369 (546)
Q Consensus 290 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 369 (546)
+....++..+|.+|...|++++|+.++++++... |....+++.+|.++...|++++|+.+|++++.+.
T Consensus 62 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---- 129 (148)
T 2dba_A 62 QDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD--------GGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLE---- 129 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--------SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----
T ss_pred hHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--------ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----
Confidence 3458899999999999999999999999999873 3337789999999999999999999999999984
Q ss_pred CCCChHHHHHHHHHHHHH
Q psy597 370 GKEHPDVAKQLNNLALLC 387 (546)
Q Consensus 370 ~~~~~~~~~~~~~la~~~ 387 (546)
|....++..++.+.
T Consensus 130 ----p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 130 ----PKNKVFQEALRNIS 143 (148)
T ss_dssp ----SSCHHHHHHHHHHH
T ss_pred ----CCcHHHHHHHHHHH
Confidence 55555666666654
No 183
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.08 E-value=3.3e-09 Score=100.91 Aligned_cols=179 Identities=13% Similarity=0.012 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q psy597 293 ATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKE 372 (546)
Q Consensus 293 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 372 (546)
..++..+|.++...|++++|+..+.+.+.. ...+....++..++.++..+|+++.|.+.++++.+..
T Consensus 100 ~~~~~~la~i~~~~g~~eeAL~~l~~~i~~------~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~------- 166 (310)
T 3mv2_B 100 PYELYLLATAQAILGDLDKSLETCVEGIDN------DEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAI------- 166 (310)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTS------SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHhcc------CCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------
Confidence 344579999999999999999999998653 1113668889999999999999999999999987773
Q ss_pred Ch------HHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhcCCCChH--HHHHHHHHHHHHHHcCCHHHHHHHH
Q psy597 373 HP------DVAKQLNNLALLCQNQS--KYEEVERYYQRALEIYELKLGPDDSN--VAKTKNNLASCYLKQGKYKEAEILY 442 (546)
Q Consensus 373 ~~------~~~~~~~~la~~~~~~g--~~~eA~~~~~~al~~~~~~~~~~~~~--~~~~~~~La~~y~~~g~~~eA~~~~ 442 (546)
| +.......-|++....| ++.+|..+|+++.+. .|. ....+.+ ++..+|++++|...+
T Consensus 167 -~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--------~p~~~~~~lLln---~~~~~g~~~eAe~~L 234 (310)
T 3mv2_B 167 -EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--------FPTWKTQLGLLN---LHLQQRNIAEAQGIV 234 (310)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--------SCSHHHHHHHHH---HHHHHTCHHHHHHHH
T ss_pred -ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--------CCCcccHHHHHH---HHHHcCCHHHHHHHH
Confidence 4 33334444455566666 999999999997654 333 3334444 899999999999999
Q ss_pred HHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q psy597 443 KQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILY 522 (546)
Q Consensus 443 ~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~ 522 (546)
+.+++..|+-... .. . .|..+.++.+++.+....|+ +|.+++
T Consensus 235 ~~l~~~~p~~~~k--------------------------~~--~--------~p~~~~~LaN~i~l~~~lgk--~a~~l~ 276 (310)
T 3mv2_B 235 ELLLSDYYSVEQK--------------------------EN--A--------VLYKPTFLANQITLALMQGL--DTEDLT 276 (310)
T ss_dssp HHHHSHHHHTTTC--------------------------HH--H--------HSSHHHHHHHHHHHHHHTTC--TTHHHH
T ss_pred HHHHHhccccccc--------------------------cc--C--------CCCCHHHHHHHHHHHHHhCh--HHHHHH
Confidence 9777653321000 00 0 25567788888888888887 888999
Q ss_pred HHHHHHhhhhcc
Q psy597 523 KQVLTRAHEREF 534 (546)
Q Consensus 523 ~~al~~~~~~~~ 534 (546)
+++.+..|+.++
T Consensus 277 ~qL~~~~P~hp~ 288 (310)
T 3mv2_B 277 NQLVKLDHEHAF 288 (310)
T ss_dssp HHHHHTTCCCHH
T ss_pred HHHHHhCCCChH
Confidence 999988877654
No 184
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.07 E-value=6.9e-09 Score=98.74 Aligned_cols=182 Identities=15% Similarity=0.073 Sum_probs=133.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHH
Q psy597 215 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVAT 294 (546)
Q Consensus 215 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 294 (546)
..++..+|.++...|++++|+.++.+++. ....+....
T Consensus 100 ~~~~~~la~i~~~~g~~eeAL~~l~~~i~------------------------------------------~~~~~~~le 137 (310)
T 3mv2_B 100 PYELYLLATAQAILGDLDKSLETCVEGID------------------------------------------NDEAEGTTE 137 (310)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHT------------------------------------------SSCSTTHHH
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHhc------------------------------------------cCCCcCcHH
Confidence 34457999999999999999999999876 112247888
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhcCCC
Q psy597 295 MLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRG--KYKEAEPLCKRALEIREKVLGKE 372 (546)
Q Consensus 295 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~ 372 (546)
++..++.++...|+.+.|.+.++++.+..+... .......+...-|.+....| ++.+|..+|+++....
T Consensus 138 a~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~--~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~------- 208 (310)
T 3mv2_B 138 LLLLAIEVALLNNNVSTASTIFDNYTNAIEDTV--SGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF------- 208 (310)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHH--HHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS-------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccc--ccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC-------
Confidence 999999999999999999999999877621000 00122333333355566666 9999999999976553
Q ss_pred ChH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 373 HPD--VAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPD--DSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 373 ~~~--~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~--~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
|. ....+.+ ++..+|++++|...++.+++.+-.....+ +|..+.++.|++.+...+|+ +|.+++.++.+.
T Consensus 209 -p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 209 -PTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp -CSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred -CCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 43 3334444 89999999999999997776632110000 26688899999999999998 899999999998
Q ss_pred hhhcc
Q psy597 449 AHERE 453 (546)
Q Consensus 449 ~~~~~ 453 (546)
.|+++
T Consensus 283 ~P~hp 287 (310)
T 3mv2_B 283 DHEHA 287 (310)
T ss_dssp TCCCH
T ss_pred CCCCh
Confidence 76654
No 185
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.07 E-value=1.2e-10 Score=93.66 Aligned_cols=101 Identities=22% Similarity=0.209 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q psy597 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPD 414 (546)
Q Consensus 335 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~ 414 (546)
..++..+|.++...|++++|+.+|++++... |....++.++|.++...|++++|+.+|++++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-------- 69 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD--------PEESKYWLMKGKALYNLERYEEAVDCYNYVINV-------- 69 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--------cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------
Confidence 5568899999999999999999999999983 666778999999999999999999999999987
Q ss_pred ChH--HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhhhh
Q psy597 415 DSN--VAKTKNNLASCYLKQ-GKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 415 ~~~--~~~~~~~La~~y~~~-g~~~eA~~~~~~al~~~~~ 451 (546)
.|. ...++.++|.++... |++++|+.++++++...+.
T Consensus 70 ~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 70 IEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp SCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred CcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 566 778999999999999 9999999999999987553
No 186
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.05 E-value=3.5e-10 Score=92.51 Aligned_cols=93 Identities=15% Similarity=0.194 Sum_probs=80.0
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q psy597 347 KRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLA 426 (546)
Q Consensus 347 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La 426 (546)
..|++++|+.+|++++++. .++|....++.++|.+|...|++++|+.+|++++++ .|....++.++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~-----~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~ 68 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASG-----LQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--------FPNHQALRVFYA 68 (117)
T ss_dssp -----CCCHHHHHHHHSSC-----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcC-----CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCchHHHHHHH
Confidence 4689999999999999861 223888999999999999999999999999999999 788889999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhhhc
Q psy597 427 SCYLKQGKYKEAEILYKQVLTRAHER 452 (546)
Q Consensus 427 ~~y~~~g~~~eA~~~~~~al~~~~~~ 452 (546)
.+|...|++++|+..|++++...+.+
T Consensus 69 ~~~~~~g~~~~A~~~~~~al~~~p~~ 94 (117)
T 3k9i_A 69 MVLYNLGRYEQGVELLLKIIAETSDD 94 (117)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 99999999999999999999986543
No 187
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.05 E-value=9.6e-11 Score=116.45 Aligned_cols=241 Identities=14% Similarity=0.164 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhH
Q psy597 213 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDV 292 (546)
Q Consensus 213 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 292 (546)
.++..+..++..+...|+|++|+.+++.+.+..+... .+........-+....+. ..+. ..|..
T Consensus 59 ~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~--i~~~Li~~Y~Klg~l~e~----------e~f~----~~pn~ 122 (449)
T 1b89_A 59 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY--VETELIFALAKTNRLAEL----------EEFI----NGPNN 122 (449)
T ss_dssp ----------------------------------------------------CHHHH----------TTTT----TCC--
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccch--hHHHHHHHHHHhCCHHHH----------HHHH----cCCcH
Confidence 3556888889999999999999999998887532211 000000000001111000 0111 12322
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q psy597 293 ATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKE 372 (546)
Q Consensus 293 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 372 (546)
.++..+|..+...|+|++|..+|.++ ..+..+|.++..+|+|++|++.++++.
T Consensus 123 -~a~~~IGd~~~~~g~yeeA~~~Y~~a----------------~n~~~LA~~L~~Lg~yq~AVea~~KA~---------- 175 (449)
T 1b89_A 123 -AHIQQVGDRCYDEKMYDAAKLLYNNV----------------SNFGRLASTLVHLGEYQAAVDGARKAN---------- 175 (449)
T ss_dssp ---------------CTTTHHHHHHHT----------------TCHHHHHHHHHTTTCHHHHHHHHHHHT----------
T ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHh----------------hhHHHHHHHHHHhccHHHHHHHHHHcC----------
Confidence 48999999999999999999999975 258899999999999999999999982
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhc
Q psy597 373 HPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 452 (546)
Q Consensus 373 ~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~ 452 (546)
...+|..++.+|...|+++.|..+..... . +|... ..++.+|.+.|++++|+.+++.++...+.+
T Consensus 176 ---~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~--------~ad~l---~~lv~~Yek~G~~eEai~lLe~aL~le~ah 240 (449)
T 1b89_A 176 ---STRTWKEVCFACVDGKEFRLAQMCGLHIV-V--------HADEL---EELINYYQDRGYFEELITMLEAALGLERAH 240 (449)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHTTTTTT-T--------CHHHH---HHHHHHHHHTTCHHHHHHHHHHHTTSTTCC
T ss_pred ---CchhHHHHHHHHHHcCcHHHHHHHHHHHH-h--------CHhhH---HHHHHHHHHCCCHHHHHHHHHHHhCCcHHH
Confidence 24567888999999999999977766521 2 55553 358899999999999999999999763221
Q ss_pred ccCcccCCChhhHH--HHhhchhhHHHHHHHHHHHHHHHHcCCCCH-----HHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy597 453 EFGACDGDNKPIWQ--DRQKNKAKNREKYYQRALEIYELKLGPDDS-----NVAKTKNNLASCYLKQGKYKEAEILYK 523 (546)
Q Consensus 453 ~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~-----~~~~~~~~La~~y~~~g~~~~A~~~~~ 523 (546)
......++.. ....++..+.++.|...+.+ ++ .....|..+.-+|...++|+.|....-
T Consensus 241 ----~~~ftel~il~~ky~p~k~~ehl~~~~~~ini--------~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~ 306 (449)
T 1b89_A 241 ----MGMFTELAILYSKFKPQKMREHLELFWSRVNI--------PKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM 306 (449)
T ss_dssp ----HHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCH--------HHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcC--------cHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 0111111222 22334555555555544444 23 345678899999999999999987543
No 188
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.04 E-value=1.6e-10 Score=92.86 Aligned_cols=104 Identities=18% Similarity=0.161 Sum_probs=91.3
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcc
Q psy597 374 PDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHERE 453 (546)
Q Consensus 374 ~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~ 453 (546)
|....++..+|.++...|++++|+.+|++++++ .|....++.++|.++...|++++|+.+|++++..
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~----- 69 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQL--------DPEESKYWLMKGKALYNLERYEEAVDCYNYVINV----- 69 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----
Confidence 444567889999999999999999999999998 6667788999999999999999999999999875
Q ss_pred cCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHH--HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHhh
Q psy597 454 FGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSN--VAKTKNNLASCYLKQ-GKYKEAEILYKQVLTRAH 530 (546)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~--~~~~~~~La~~y~~~-g~~~~A~~~~~~al~~~~ 530 (546)
.|. ...++..+|.++... |++++|+.++++++...|
T Consensus 70 -----------------------------------------~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 70 -----------------------------------------IEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp -----------------------------------------SCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred -----------------------------------------CcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 233 466889999999999 999999999999998765
Q ss_pred h
Q psy597 531 E 531 (546)
Q Consensus 531 ~ 531 (546)
.
T Consensus 109 ~ 109 (112)
T 2kck_A 109 H 109 (112)
T ss_dssp C
T ss_pred C
Confidence 4
No 189
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.04 E-value=2.3e-09 Score=112.61 Aligned_cols=187 Identities=13% Similarity=0.082 Sum_probs=149.3
Q ss_pred ChhHHHHHHHHHHHHHHhhc----------HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC--CHHHHHH
Q psy597 289 HPDVATMLNILALVYRDQNK----------YKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRG--KYKEAEP 356 (546)
Q Consensus 289 ~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g--~~~~A~~ 356 (546)
.|....+|+..+.++...|+ +++++..+++++.. +|....+|+..+.++...| ++++++.
T Consensus 59 nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--------~pK~y~aW~hR~w~l~~l~~~~~~~el~ 130 (567)
T 1dce_A 59 NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--------NPKSYGTWHHRCWLLSRLPEPNWARELE 130 (567)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTCSSCCHHHHHH
T ss_pred CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcccccHHHHHH
Confidence 67778899999999999998 99999999999987 5666889999999999999 7799999
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCH
Q psy597 357 LCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQS-KYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKY 435 (546)
Q Consensus 357 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~ 435 (546)
++.++++. +|....+|+..+.++...| .+++++.++.++++. +|....+|++.+.++...++.
T Consensus 131 ~~~k~l~~--------d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~--------~p~n~saW~~r~~ll~~l~~~ 194 (567)
T 1dce_A 131 LCARFLEA--------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--------NFSNYSSWHYRSCLLPQLHPQ 194 (567)
T ss_dssp HHHHHHHH--------CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--------TCCCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHhh--------ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHH--------CCCCccHHHHHHHHHHhhccc
Confidence 99999998 5888999999999999999 999999999999988 888899999999999886443
Q ss_pred HHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCH
Q psy597 436 KEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKY 515 (546)
Q Consensus 436 ~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~ 515 (546)
.++. ..+ ....+.+++++.++.+|+.+ .|....+|+.++.++...+++
T Consensus 195 ~~~~-------------~~~-----------~~~~~~~~eel~~~~~ai~~--------~P~~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 195 PDSG-------------PQG-----------RLPENVLLKELELVQNAFFT--------DPNDQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp CCSS-------------SCC-----------SSCHHHHHHHHHHHHHHHHH--------CSSCSHHHHHHHHHHSCCCCC
T ss_pred cccc-------------ccc-----------cccHHHHHHHHHHHHHHHhh--------CCCCccHHHHHHHHHhcCCCc
Confidence 1100 000 00123455566666666665 677778899999999988886
Q ss_pred HH------------HHHHHHHHHHHhhh
Q psy597 516 KE------------AEILYKQVLTRAHE 531 (546)
Q Consensus 516 ~~------------A~~~~~~al~~~~~ 531 (546)
++ |+.+|.+++.+.|.
T Consensus 243 ~~~~~~~~~~~~~~~~~~f~~~i~~~~~ 270 (567)
T 1dce_A 243 DVLCCVHVSREEACLSVCFSRPLTVGSR 270 (567)
T ss_dssp SCEEEEEEETTTTEEEEEEEEEECTTBT
T ss_pred cceeeeeeccCCceEEEEeccceecccc
Confidence 66 55556666665544
No 190
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.03 E-value=3.3e-10 Score=92.67 Aligned_cols=89 Identities=15% Similarity=0.151 Sum_probs=76.7
Q ss_pred HhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q psy597 305 DQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLA 384 (546)
Q Consensus 305 ~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 384 (546)
..|++++|+.+|++++.+. .++|....++.++|.+|...|++++|+.+|+++++.. |....++.++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~-----~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l~ 68 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASG-----LQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF--------PNHQALRVFYA 68 (117)
T ss_dssp -----CCCHHHHHHHHSSC-----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcC-----CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCchHHHHHHH
Confidence 4689999999999999751 2247778999999999999999999999999999984 77788999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHH
Q psy597 385 LLCQNQSKYEEVERYYQRALEI 406 (546)
Q Consensus 385 ~~~~~~g~~~eA~~~~~~al~~ 406 (546)
.++...|++++|+.+|++++..
T Consensus 69 ~~~~~~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 69 MVLYNLGRYEQGVELLLKIIAE 90 (117)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999987
No 191
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.02 E-value=7.9e-10 Score=93.88 Aligned_cols=89 Identities=13% Similarity=0.203 Sum_probs=80.2
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHHHhcCCCCh
Q psy597 347 KRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKY----------EEVERYYQRALEIYELKLGPDDS 416 (546)
Q Consensus 347 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----------~eA~~~~~~al~~~~~~~~~~~~ 416 (546)
+.+.|++|+..+++++++ .|..+.+++++|.++...+++ ++|+..|++|+++ +|
T Consensus 14 r~~~feeA~~~~~~Ai~l--------~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--------dP 77 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--------DP 77 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------CT
T ss_pred HHhHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--------Cc
Confidence 556899999999999999 488999999999999998875 5999999999999 99
Q ss_pred HHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhhhh
Q psy597 417 NVAKTKNNLASCYLKQG-----------KYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 417 ~~~~~~~~La~~y~~~g-----------~~~eA~~~~~~al~~~~~ 451 (546)
....+++++|.+|..+| ++++|+.+|++++++.|+
T Consensus 78 ~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~ 123 (158)
T 1zu2_A 78 KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPD 123 (158)
T ss_dssp TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred CcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCC
Confidence 99999999999999885 899999999999988654
No 192
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.93 E-value=2.2e-09 Score=91.08 Aligned_cols=87 Identities=11% Similarity=0.156 Sum_probs=78.6
Q ss_pred HHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHHHhcCCCC
Q psy597 304 RDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKY----------KEAEPLCKRALEIREKVLGKEH 373 (546)
Q Consensus 304 ~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~ 373 (546)
.+.+.|++|+..+++++.+ .|..+.+++++|.++...+++ ++|+..|++++++ .
T Consensus 13 ~r~~~feeA~~~~~~Ai~l--------~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--------d 76 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--------D 76 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------C
T ss_pred HHHhHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--------C
Confidence 3567899999999999998 566688999999999999875 5999999999999 4
Q ss_pred hHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHH
Q psy597 374 PDVAKQLNNLALLCQNQS-----------KYEEVERYYQRALEI 406 (546)
Q Consensus 374 ~~~~~~~~~la~~~~~~g-----------~~~eA~~~~~~al~~ 406 (546)
|....+++++|.+|..+| ++++|+.+|++|+++
T Consensus 77 P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 77 PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 889999999999999875 899999999999999
No 193
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.90 E-value=1.6e-08 Score=98.13 Aligned_cols=171 Identities=10% Similarity=0.002 Sum_probs=150.2
Q ss_pred ChhhHHHhhhcCCCchHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHH
Q psy597 197 PPSQFAQQVNAGYEIPARLRTLHNLVIQYASQG-RYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQ 275 (546)
Q Consensus 197 ~~~~~~~~~~~~~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~ 275 (546)
...++.........+|....+|+..+.++...| .+++++.++..++.
T Consensus 70 se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~-------------------------------- 117 (349)
T 3q7a_A 70 SERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAV-------------------------------- 117 (349)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--------------------------------
T ss_pred CHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH--------------------------------
Confidence 345666666667778999999999999999999 59999999999997
Q ss_pred HHHHHHhccCCCCChhHHHHHHHHHHHHHHh-h-cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHH-
Q psy597 276 AKVAQILGSGGHDHPDVATMLNILALVYRDQ-N-KYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYK- 352 (546)
Q Consensus 276 ~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~-g-~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~- 352 (546)
.+|....+|+..+.++... + ++++++.++.+++.. +|....+|...+.+....|.++
T Consensus 118 ------------~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~--------dpkNy~AW~~R~wvl~~l~~~~~ 177 (349)
T 3q7a_A 118 ------------QNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLP--------DPKNYHTWAYLHWLYSHFSTLGR 177 (349)
T ss_dssp ------------TTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSS--------CTTCHHHHHHHHHHHHHHHHTTC
T ss_pred ------------hCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhccccc
Confidence 5678888999999999998 7 899999999999865 5666889999999999988888
Q ss_pred -------HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHHHHHhcCCCChHH
Q psy597 353 -------EAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSK-------YEEVERYYQRALEIYELKLGPDDSNV 418 (546)
Q Consensus 353 -------~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-------~~eA~~~~~~al~~~~~~~~~~~~~~ 418 (546)
+++.++.++++. +|....+|++.+.++...+. +++++.++.+++.+ +|..
T Consensus 178 ~~~~~~~eELe~~~k~I~~--------dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~--------~P~n 241 (349)
T 3q7a_A 178 ISEAQWGSELDWCNEMLRV--------DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL--------IPHN 241 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH--------CTTC
T ss_pred cchhhHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh--------CCCC
Confidence 999999999998 58889999999999999987 79999999999999 8999
Q ss_pred HHHHHHHHHHHHHcCCH
Q psy597 419 AKTKNNLASCYLKQGKY 435 (546)
Q Consensus 419 ~~~~~~La~~y~~~g~~ 435 (546)
..+++.+..++...|+.
T Consensus 242 ~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 242 VSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 99999999999888875
No 194
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.90 E-value=1.1e-08 Score=78.74 Aligned_cols=87 Identities=39% Similarity=0.541 Sum_probs=78.1
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy597 331 HAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELK 410 (546)
Q Consensus 331 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~ 410 (546)
++....++..+|.++...|++++|+.+|++++... |....++.++|.++...|++++|+.+|++++.+
T Consensus 5 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---- 72 (91)
T 1na3_A 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---- 72 (91)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred ccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----
Confidence 34567889999999999999999999999999883 666788999999999999999999999999998
Q ss_pred cCCCChHHHHHHHHHHHHHHHcC
Q psy597 411 LGPDDSNVAKTKNNLASCYLKQG 433 (546)
Q Consensus 411 ~~~~~~~~~~~~~~La~~y~~~g 433 (546)
+|....++.++|.++...|
T Consensus 73 ----~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 73 ----DPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp ----CTTCHHHHHHHHHHHHHHC
T ss_pred ----CCCCHHHHHHHHHHHHhcC
Confidence 7778889999999998765
No 195
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.90 E-value=1e-08 Score=107.64 Aligned_cols=158 Identities=10% Similarity=0.034 Sum_probs=136.2
Q ss_pred HhhcH-HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHHhcCCCC
Q psy597 305 DQNKY-KEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGK----------YKEAEPLCKRALEIREKVLGKEH 373 (546)
Q Consensus 305 ~~g~~-~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~ 373 (546)
..|++ ++|+..+.+++.+ .|....+|+..+.++...|+ +++++.++.+++.. +
T Consensus 40 ~~~~~~eeal~~~~~~l~~--------nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--------~ 103 (567)
T 1dce_A 40 QAGELDESVLELTSQILGA--------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--------N 103 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--------C
T ss_pred HcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--------C
Confidence 33443 6789999999988 56668899999999999998 99999999999988 5
Q ss_pred hHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhh
Q psy597 374 PDVAKQLNNLALLCQNQS--KYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQG-KYKEAEILYKQVLTRAH 450 (546)
Q Consensus 374 ~~~~~~~~~la~~~~~~g--~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g-~~~eA~~~~~~al~~~~ 450 (546)
|....+|+..+.++...| ++++++.++.+++++ +|....+|...+.+....| .++++++++.+++..
T Consensus 104 pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~--------d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~-- 173 (567)
T 1dce_A 104 PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR-- 173 (567)
T ss_dssp TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--
T ss_pred CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhh--------ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHH--
Confidence 889999999999999999 779999999999999 8999999999999999999 899999998888875
Q ss_pred hcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHc--------------CCHH
Q psy597 451 EREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ--------------GKYK 516 (546)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~--------------g~~~ 516 (546)
+|....+|...+.++... +.++
T Consensus 174 --------------------------------------------~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~ 209 (567)
T 1dce_A 174 --------------------------------------------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLL 209 (567)
T ss_dssp --------------------------------------------TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHH
T ss_pred --------------------------------------------CCCCccHHHHHHHHHHhhcccccccccccccHHHHH
Confidence 455566777777776664 5689
Q ss_pred HHHHHHHHHHHHhhhh
Q psy597 517 EAEILYKQVLTRAHER 532 (546)
Q Consensus 517 ~A~~~~~~al~~~~~~ 532 (546)
+|++++.+|+.+.|++
T Consensus 210 eel~~~~~ai~~~P~~ 225 (567)
T 1dce_A 210 KELELVQNAFFTDPND 225 (567)
T ss_dssp HHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHhhCCCC
Confidence 9999999999987654
No 196
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.85 E-value=1.3e-09 Score=87.67 Aligned_cols=94 Identities=16% Similarity=0.147 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q psy597 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPD 414 (546)
Q Consensus 335 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~ 414 (546)
+.++..+|.++...|++++|+.+|++++.+. |....++.++|.++...|++++|+.+|++++.+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------- 67 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ--------PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY-------- 67 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------
Confidence 5678999999999999999999999999983 777889999999999999999999999999987
Q ss_pred ChHH------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy597 415 DSNV------AKTKNNLASCYLKQGKYKEAEILYKQ 444 (546)
Q Consensus 415 ~~~~------~~~~~~La~~y~~~g~~~eA~~~~~~ 444 (546)
.|.. ..++..+|.++...|+++.|+..+++
T Consensus 68 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 68 TSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp CSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 4444 78899999999999988877665543
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.82 E-value=3.5e-08 Score=75.92 Aligned_cols=68 Identities=38% Similarity=0.539 Sum_probs=62.2
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 373 HPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 373 ~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
++....++..+|.++...|++++|+.+|++++.+ .|....++.++|.+|...|++++|+.+|++++..
T Consensus 5 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4567889999999999999999999999999998 6777889999999999999999999999999886
No 198
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.79 E-value=2.3e-07 Score=98.90 Aligned_cols=226 Identities=9% Similarity=0.053 Sum_probs=158.9
Q ss_pred hhcCCCchHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhc
Q psy597 205 VNAGYEIPARLRTLHNLVIQYASQGRYEVAV-PLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILG 283 (546)
Q Consensus 205 ~~~~~~~p~~~~~~~~lg~~~~~~g~~~~A~-~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 283 (546)
.......|..+..|+..+..+...|+.++|. ..|.+|+..
T Consensus 333 e~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~--------------------------------------- 373 (679)
T 4e6h_A 333 MQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC--------------------------------------- 373 (679)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH---------------------------------------
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh---------------------------------------
Confidence 3344455667788888888888889888887 889888873
Q ss_pred cCCCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcC------CC--------CHHHHHHHHHHHHHHHHcC
Q psy597 284 SGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLG------EN--------HAAVAATLNNLAVLYGKRG 349 (546)
Q Consensus 284 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g------~~--------~~~~~~~~~~la~~~~~~g 349 (546)
.|.....+...+.+....|+++.|...|++++........ +. ......+|...+....+.|
T Consensus 374 -----~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~ 448 (679)
T 4e6h_A 374 -----IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQ 448 (679)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcC
Confidence 2334566788899999999999999999999986431100 11 0124557888888888889
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q psy597 350 KYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQS-KYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASC 428 (546)
Q Consensus 350 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~ 428 (546)
..+.|..+|.+|+... .+....++...|.+....+ +++.|...|+++++.+ |.....+...+..
T Consensus 449 ~l~~AR~vf~~A~~~~-------~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--------p~~~~~w~~y~~f 513 (679)
T 4e6h_A 449 GLAASRKIFGKCRRLK-------KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--------ATDGEYINKYLDF 513 (679)
T ss_dssp CHHHHHHHHHHHHHTG-------GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--------TTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhc-------CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--------CCchHHHHHHHHH
Confidence 9999999999998751 0112344556666666655 4899999999999973 3334455667777
Q ss_pred HHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q psy597 429 YLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASC 508 (546)
Q Consensus 429 y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~ 508 (546)
....|+.+.|..+|++++...++ .......+......
T Consensus 514 e~~~~~~~~AR~lferal~~~~~-------------------------------------------~~~~~~lw~~~~~f 550 (679)
T 4e6h_A 514 LIYVNEESQVKSLFESSIDKISD-------------------------------------------SHLLKMIFQKVIFF 550 (679)
T ss_dssp HHHHTCHHHHHHHHHHHTTTSSS-------------------------------------------TTHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhcCC-------------------------------------------HHHHHHHHHHHHHH
Confidence 88889999999999998875321 01233445555555
Q ss_pred HHHcCCHHHHHHHHHHHHHHhhhh
Q psy597 509 YLKQGKYKEAEILYKQVLTRAHER 532 (546)
Q Consensus 509 y~~~g~~~~A~~~~~~al~~~~~~ 532 (546)
-...|+.+.+...++++.+.+|+.
T Consensus 551 E~~~G~~~~~~~v~~R~~~~~P~~ 574 (679)
T 4e6h_A 551 ESKVGSLNSVRTLEKRFFEKFPEV 574 (679)
T ss_dssp HHHTCCSHHHHHHHHHHHHHSTTC
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCC
Confidence 666677777777777777766653
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.77 E-value=3.5e-09 Score=85.04 Aligned_cols=100 Identities=16% Similarity=0.112 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccC
Q psy597 376 VAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFG 455 (546)
Q Consensus 376 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~ 455 (546)
.+..+..+|.++...|++++|+.+|++++.+ .|..+.++.++|.+|..+|++++|+..|++++.+.+...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-- 72 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA--------QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAE-- 72 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTT--
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcc--
Confidence 3567899999999999999999999999998 777788999999999999999999999999998744321
Q ss_pred cccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy597 456 ACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYK 523 (546)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~ 523 (546)
+......++..+|.++...|+++.|+..++
T Consensus 73 --------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 73 --------------------------------------HVAIRSKLQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp --------------------------------------SHHHHHHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred --------------------------------------HHHHHHHHHHHHHHHHHHHHhHhhhHhHHH
Confidence 011235677888888888887777665544
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.70 E-value=3.4e-08 Score=80.09 Aligned_cols=85 Identities=15% Similarity=0.167 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchh
Q psy597 394 EEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKA 473 (546)
Q Consensus 394 ~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (546)
++|+..|+++++. .|....+++++|.+|...|++++|+.+|++++..
T Consensus 2 ~~a~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------------------------- 48 (115)
T 2kat_A 2 QAITERLEAMLAQ--------GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF------------------------- 48 (115)
T ss_dssp CCHHHHHHHHHTT--------TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------------
T ss_pred hHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH-------------------------
Confidence 3578888888887 6777889999999999999999999999999986
Q ss_pred hHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Q psy597 474 KNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 532 (546)
Q Consensus 474 ~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~~ 532 (546)
.|....++..+|.+|...|++++|+.+|++++++.|..
T Consensus 49 ---------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 86 (115)
T 2kat_A 49 ---------------------DPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSR 86 (115)
T ss_dssp ---------------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 34445677888888888888888888888888887654
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.70 E-value=5.2e-08 Score=78.96 Aligned_cols=84 Identities=15% Similarity=0.109 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc
Q psy597 353 EAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ 432 (546)
Q Consensus 353 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~ 432 (546)
.|+..|++++.. .|....+++++|.++...|++++|+.+|++++.+ +|....++.++|.+|...
T Consensus 3 ~a~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~ 66 (115)
T 2kat_A 3 AITERLEAMLAQ--------GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--------DPTYSVAWKWLGKTLQGQ 66 (115)
T ss_dssp CHHHHHHHHHTT--------TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHc
Confidence 577888888876 3667889999999999999999999999999998 777888999999999999
Q ss_pred CCHHHHHHHHHHHHHhhhhc
Q psy597 433 GKYKEAEILYKQVLTRAHER 452 (546)
Q Consensus 433 g~~~eA~~~~~~al~~~~~~ 452 (546)
|++++|+..|++++.+.+..
T Consensus 67 g~~~~A~~~~~~al~~~~~~ 86 (115)
T 2kat_A 67 GDRAGARQAWESGLAAAQSR 86 (115)
T ss_dssp TCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcccc
Confidence 99999999999999986643
No 202
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.64 E-value=6.9e-08 Score=76.20 Aligned_cols=71 Identities=18% Similarity=0.174 Sum_probs=64.7
Q ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 373 HPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 373 ~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
+|....+++++|.++...|++++|+.+|++++++ +|....++.++|.+|...|++++|+..|++++.+.+.
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVET--------DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 3667889999999999999999999999999999 7888889999999999999999999999999998654
No 203
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.62 E-value=3.1e-07 Score=77.24 Aligned_cols=111 Identities=14% Similarity=0.117 Sum_probs=94.8
Q ss_pred hhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q psy597 306 QNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLAL 385 (546)
Q Consensus 306 ~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 385 (546)
.+++++|+.+|+++.+. .+.. +. +|.+|...+.+++|+.+|+++.+. ..+.++++||.
T Consensus 8 ~~d~~~A~~~~~~aa~~------g~~~----a~--lg~~y~~g~~~~~A~~~~~~Aa~~----------g~~~a~~~Lg~ 65 (138)
T 1klx_A 8 KKDLKKAIQYYVKACEL------NEMF----GC--LSLVSNSQINKQKLFQYLSKACEL----------NSGNGCRFLGD 65 (138)
T ss_dssp HHHHHHHHHHHHHHHHT------TCTT----HH--HHHHTCTTSCHHHHHHHHHHHHHT----------TCHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHcC------CCHh----hh--HHHHHHcCCCHHHHHHHHHHHHcC----------CCHHHHHHHHH
Confidence 46789999999999875 2222 22 999999999999999999999875 24678899999
Q ss_pred HHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Q psy597 386 LCQN----QSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK----QGKYKEAEILYKQVLTR 448 (546)
Q Consensus 386 ~~~~----~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~----~g~~~eA~~~~~~al~~ 448 (546)
+|.. .+++++|+.+|+++.+. ..+.+.++||.+|.. .+++++|+.+|+++.+.
T Consensus 66 ~y~~G~g~~~d~~~A~~~~~~Aa~~----------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 66 FYENGKYVKKDLRKAAQYYSKACGL----------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHCSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHcCCCCCccHHHHHHHHHHHHcC----------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 9998 89999999999999875 235678999999999 99999999999999875
No 204
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.57 E-value=1.2e-07 Score=74.41 Aligned_cols=62 Identities=15% Similarity=0.111 Sum_probs=56.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q psy597 381 NNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAK-TKNNLASCYLKQGKYKEAEILYKQVLTRAH 450 (546)
Q Consensus 381 ~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~-~~~~La~~y~~~g~~~eA~~~~~~al~~~~ 450 (546)
+..|.++...|++++|+..|+++++. .|.... ++.++|.+|...|++++|+.+|++++...+
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQT--------EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--------CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 56899999999999999999999998 777777 999999999999999999999999998743
No 205
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.57 E-value=3e-07 Score=72.42 Aligned_cols=72 Identities=15% Similarity=0.197 Sum_probs=63.4
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCCh
Q psy597 211 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHP 290 (546)
Q Consensus 211 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 290 (546)
+|.++.+++.+|.+|...|+|++|+.+|+++++. .|
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------------------------------------------~p 38 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVET--------------------------------------------DP 38 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------------------------ST
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------------------------------------CC
Confidence 4777889999999999999999999999999985 34
Q ss_pred hHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh
Q psy597 291 DVATMLNILALVYRDQNKYKEAANLLNDALTIREKT 326 (546)
Q Consensus 291 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 326 (546)
....+++.+|.+|...|++++|+..|++++.+.+..
T Consensus 39 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 39 DYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 556689999999999999999999999999997654
No 206
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.56 E-value=1.3e-07 Score=74.22 Aligned_cols=91 Identities=11% Similarity=0.110 Sum_probs=76.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChH
Q psy597 339 NNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAK-QLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSN 417 (546)
Q Consensus 339 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~ 417 (546)
+..|.++...|++++|+..|+++++.. |.... ++.++|.++...|++++|+.+|++++.+ +|.
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~ 67 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTE--------PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL--------NPD 67 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC--------SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC--------CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCC
Confidence 568899999999999999999999983 66777 9999999999999999999999999998 666
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcc
Q psy597 418 VAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHERE 453 (546)
Q Consensus 418 ~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~ 453 (546)
...++.+ +.+.+++..|+++....+...
T Consensus 68 ~~~~~~~--------~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 68 SPALQAR--------KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp STHHHHH--------HHHHHHHHHHCCTTHHHHCCS
T ss_pred cHHHHHH--------HHHHHHHHHHHHHhccCcccc
Confidence 5555533 667888888888877766543
No 207
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.50 E-value=1.4e-06 Score=73.23 Aligned_cols=88 Identities=14% Similarity=0.153 Sum_probs=78.4
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCCh
Q psy597 299 LALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGK----RGKYKEAEPLCKRALEIREKVLGKEHP 374 (546)
Q Consensus 299 la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~ 374 (546)
+|.+|...+.+++|+.+|+++.+. . .+.+++++|.+|.. .+++++|+.+|+++.+.
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~------g----~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~---------- 90 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL------N----SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL---------- 90 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT------T----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT----------
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC------C----CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC----------
Confidence 899999989999999999999875 1 26789999999999 89999999999999875
Q ss_pred HHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Q psy597 375 DVAKQLNNLALLCQN----QSKYEEVERYYQRALEI 406 (546)
Q Consensus 375 ~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~~ 406 (546)
..+.++++||.+|.. .+++++|+.+|++|.+.
T Consensus 91 g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 91 NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 236678999999999 99999999999999886
No 208
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.47 E-value=1.9e-06 Score=91.88 Aligned_cols=194 Identities=11% Similarity=0.076 Sum_probs=145.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q psy597 310 KEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAE-PLCKRALEIREKVLGKEHPDVAKQLNNLALLCQ 388 (546)
Q Consensus 310 ~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 388 (546)
......|++++..+ |....+|...+..+...|+.++|. ..|.+|+..+ |.....+..++.+..
T Consensus 326 ~Rv~~~Ye~aL~~~--------p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~--------P~s~~Lwl~~a~~ee 389 (679)
T 4e6h_A 326 ARMTYVYMQAAQHV--------CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI--------PNSAVLAFSLSEQYE 389 (679)
T ss_dssp HHHHHHHHHHHHHT--------TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC--------TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--------CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHH
Confidence 44567899998874 445788999999999999999997 9999999864 666778889999999
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhc------CCCC--------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhccc
Q psy597 389 NQSKYEEVERYYQRALEIYELKL------GPDD--------SNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREF 454 (546)
Q Consensus 389 ~~g~~~eA~~~~~~al~~~~~~~------~~~~--------~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~ 454 (546)
..|+++.|...|++++....... .|.. .....+|...+.+..+.|..+.|..+|.+|++..+...
T Consensus 390 ~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~- 468 (679)
T 4e6h_A 390 LNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVT- 468 (679)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSC-
T ss_pred HhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC-
Confidence 99999999999999998642110 0100 13456788888888899999999999999987622111
Q ss_pred CcccCCChhhHHHHhh-chhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q psy597 455 GACDGDNKPIWQDRQK-NKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAH 530 (546)
Q Consensus 455 ~~~~~~~~~~~~~~~~-~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~ 530 (546)
.......+...... ++.+.|...|+.+++.+ |.....+...+......|+.+.|..+|++|+...+
T Consensus 469 --~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--------p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 469 --PDIYLENAYIEYHISKDTKTACKVLELGLKYF--------ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp --THHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSS
T ss_pred --hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--------CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 11111222223333 45889999999999873 33344566778888889999999999999998765
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.26 E-value=2.6e-05 Score=75.57 Aligned_cols=134 Identities=14% Similarity=0.085 Sum_probs=96.2
Q ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHH
Q psy597 218 LHNLVIQYASQGR---YEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVAT 294 (546)
Q Consensus 218 ~~~lg~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 294 (546)
++..|..+...+. +.+|+.+|++|+++ .|..+.
T Consensus 199 l~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--------------------------------------------DP~~a~ 234 (372)
T 3ly7_A 199 NFYQAHDYLLHGDDKSLNRASELLGEIVQS--------------------------------------------SPEFTY 234 (372)
T ss_dssp HHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--------------------------------------------CTTCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--------------------------------------------CCCCHH
Confidence 4456666666554 47888889888884 566677
Q ss_pred HHHHHHHHHHHhhcH----HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q psy597 295 MLNILALVYRDQNKY----KEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 370 (546)
Q Consensus 295 ~~~~la~~~~~~g~~----~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 370 (546)
++..++.+|.....+ ......+..++...... ...|..+.++..++..+...|++++|+..+++|+.+.
T Consensus 235 A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~--~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln----- 307 (372)
T 3ly7_A 235 ARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL--PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE----- 307 (372)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC--GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc--ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-----
Confidence 777777776533221 12223333344322211 2245557788889999999999999999999999993
Q ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 371 KEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406 (546)
Q Consensus 371 ~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 406 (546)
|. ...+..+|.++...|++++|+..|.+|+.+
T Consensus 308 ---~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 308 ---MS-WLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp ---CC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 43 567789999999999999999999999999
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.21 E-value=1.4e-05 Score=77.31 Aligned_cols=139 Identities=12% Similarity=0.046 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHh---hcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC----HHHHHHHHHHHHHHHH
Q psy597 294 TMLNILALVYRDQ---NKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGK----YKEAEPLCKRALEIRE 366 (546)
Q Consensus 294 ~~~~~la~~~~~~---g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~----~~~A~~~~~~al~~~~ 366 (546)
.-++..|..+... ..+.+|+.+|++|+++ +|..+.++..++.+|..... ......-+..++....
T Consensus 197 ydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--------DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 197 LTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--------SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp HHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 3355566666654 4568999999999998 56667777777777653211 1122233334443221
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy597 367 KVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 446 (546)
Q Consensus 367 ~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al 446 (546)
.. ...|..+.++..+|..+...|++++|+..+++|+.+ +|. ..++..+|.++...|++++|++.|.+|+
T Consensus 269 a~--~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--------n~s-~~a~~llG~~~~~~G~~~eA~e~~~~Al 337 (372)
T 3ly7_A 269 TL--PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL--------EMS-WLNYVLLGKVYEMKGMNREAADAYLTAF 337 (372)
T ss_dssp TC--GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hc--ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--------CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 11 223667788889999998899999999999999999 443 5678899999999999999999999999
Q ss_pred Hhhhh
Q psy597 447 TRAHE 451 (546)
Q Consensus 447 ~~~~~ 451 (546)
.+.|.
T Consensus 338 rL~P~ 342 (372)
T 3ly7_A 338 NLRPG 342 (372)
T ss_dssp HHSCS
T ss_pred hcCCC
Confidence 98654
No 211
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.20 E-value=1.3e-05 Score=63.38 Aligned_cols=83 Identities=18% Similarity=0.163 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q psy597 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPD 414 (546)
Q Consensus 335 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~ 414 (546)
+.-++.+|..++..|+|..|+.+|+.|+........ ..+....++..+|.++..+|+++.|+.++++++.+
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~-~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l-------- 75 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEI-STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL-------- 75 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCC-CcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------
Confidence 455789999999999999999999999988643210 12456788999999999999999999999999998
Q ss_pred ChHHHHHHHHHH
Q psy597 415 DSNVAKTKNNLA 426 (546)
Q Consensus 415 ~~~~~~~~~~La 426 (546)
.|....+..+++
T Consensus 76 ~P~~~~~~~n~~ 87 (104)
T 2v5f_A 76 DPEHQRANGNLK 87 (104)
T ss_dssp CTTCHHHHHHHH
T ss_pred CCCCHHHHhhHH
Confidence 777777777776
No 212
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.17 E-value=4.6e-05 Score=78.60 Aligned_cols=168 Identities=11% Similarity=0.031 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHH
Q psy597 217 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATML 296 (546)
Q Consensus 217 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 296 (546)
.+..+-..|.+.|++++|+.+|+++.+. + -.|+. .+|
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~-----------------------------------------G-v~pd~-~ty 64 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRN-----------------------------------------G-VQLSQ-YHY 64 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHH-----------------------------------------T-CCCCH-HHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc-----------------------------------------C-CCCCH-hHH
Confidence 3555667889999999999999998763 1 22332 234
Q ss_pred HHHHHHHHH---------hhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 297 NILALVYRD---------QNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 297 ~~la~~~~~---------~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
+.+-.++.. .+..+.|..+|++.... +-.|. ..+|+.+...|.+.|++++|..+|++....
T Consensus 65 n~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~------G~~Pd-~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~--- 134 (501)
T 4g26_A 65 NVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD------KVVPN-EATFTNGARLAVAKDDPEMAFDMVKQMKAF--- 134 (501)
T ss_dssp HHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT------TCCCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---
Confidence 444444433 34578888888887643 22232 557899999999999999999999998654
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 368 VLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 447 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~ 447 (546)
+-.| ...+|+.+-..|...|+.++|...|++..+. +-.| ...+|..|..+|.+.|+.++|..++++.-.
T Consensus 135 ---g~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~------G~~P-d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 135 ---GIQP-RLRSYGPALFGFCRKGDADKAYEVDAHMVES------EVVP-EEPELAALLKVSMDTKNADKVYKTLQRLRD 203 (501)
T ss_dssp ---TCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT------TCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---CCCC-ccceehHHHHHHHHCCCHHHHHHHHHHHHhc------CCCC-CHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 2223 4667888999999999999999999998764 2233 345789999999999999999999998765
Q ss_pred h
Q psy597 448 R 448 (546)
Q Consensus 448 ~ 448 (546)
.
T Consensus 204 ~ 204 (501)
T 4g26_A 204 L 204 (501)
T ss_dssp H
T ss_pred h
Confidence 4
No 213
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.08 E-value=3.2e-05 Score=61.13 Aligned_cols=83 Identities=20% Similarity=0.191 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q psy597 293 ATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKE 372 (546)
Q Consensus 293 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 372 (546)
+.-++.+|..++..|+|..|+..|+.|+....... ........++..+|.++...|+++.|+.++++++.+.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~-~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~------- 76 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGE-ISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD------- 76 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-CCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccC-CCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-------
Confidence 34578999999999999999999999999875431 0124567889999999999999999999999999984
Q ss_pred ChHHHHHHHHHH
Q psy597 373 HPDVAKQLNNLA 384 (546)
Q Consensus 373 ~~~~~~~~~~la 384 (546)
|....+..+++
T Consensus 77 -P~~~~~~~n~~ 87 (104)
T 2v5f_A 77 -PEHQRANGNLK 87 (104)
T ss_dssp -TTCHHHHHHHH
T ss_pred -CCCHHHHhhHH
Confidence 66666677776
No 214
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.06 E-value=0.00011 Score=75.64 Aligned_cols=166 Identities=12% Similarity=0.003 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHH
Q psy597 295 MLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGK---------YKEAEPLCKRALEIR 365 (546)
Q Consensus 295 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~---------~~~A~~~~~~al~~~ 365 (546)
.+..+-..+.+.|++++|+.+|+++... +-.|. ..+|+.+-.++...+. .+.|..+|.+....
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~------Gv~pd-~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~- 99 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRN------GVQLS-QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD- 99 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHH------TCCCC-HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc------CCCCC-HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh-
Confidence 3555567888999999999999998764 22232 3456666666655443 67888888887654
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy597 366 EKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQV 445 (546)
Q Consensus 366 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~a 445 (546)
+-.| ...+|+.+-..|...|++++|..+|++.... +-.| ...+|+.+-..|.+.|+.++|..+|++.
T Consensus 100 -----G~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~------g~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 100 -----KVVP-NEATFTNGARLAVAKDDPEMAFDMVKQMKAF------GIQP-RLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp -----TCCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT------TCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC-ccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 2223 4567899999999999999999999988664 2233 4567889999999999999999999998
Q ss_pred HHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHH
Q psy597 446 LTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRAL 484 (546)
Q Consensus 446 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al 484 (546)
...... .....++.+...+...|+.++|...+++..
T Consensus 167 ~~~G~~---Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr 202 (501)
T 4g26_A 167 VESEVV---PEEPELAALLKVSMDTKNADKVYKTLQRLR 202 (501)
T ss_dssp HHTTCC---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhcCCC---CCHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 764111 011112223333445555555555554443
No 215
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.04 E-value=0.00044 Score=64.22 Aligned_cols=105 Identities=13% Similarity=0.053 Sum_probs=84.6
Q ss_pred CHHHHHHHHHHHHHHHH-----cC------CHHHHHHHHHHHHHHHHHhcCCCChH--HHHHHHHHHHHHHHc-----CC
Q psy597 331 HAAVAATLNNLAVLYGK-----RG------KYKEAEPLCKRALEIREKVLGKEHPD--VAKQLNNLALLCQNQ-----SK 392 (546)
Q Consensus 331 ~~~~~~~~~~la~~~~~-----~g------~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~-----g~ 392 (546)
.+..+..++..|.+... .| ....|...+++++++ +|. ...++..+|.+|... |+
T Consensus 148 ~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL--------DP~~~~GsA~~~LG~lY~~vPp~~gGd 219 (301)
T 3u64_A 148 TRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL--------WPSYQEGAVWNVLTKFYAAAPESFGGG 219 (301)
T ss_dssp CGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH--------CTTHHHHHHHHHHHHHHHHSCTTTTCC
T ss_pred CccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh--------CCCcccCHHHHHHHHHHHhCCCccCCC
Confidence 34445566665555433 13 367888999999999 355 677999999999995 99
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChHH-HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhhhh
Q psy597 393 YEEVERYYQRALEIYELKLGPDDSNV-AKTKNNLASCYLK-QGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 393 ~~eA~~~~~~al~~~~~~~~~~~~~~-~~~~~~La~~y~~-~g~~~eA~~~~~~al~~~~~ 451 (546)
.++|..+|++|+++ +|+. ..+++..|..+.. +|++++|..++++++...+.
T Consensus 220 ~ekA~~~ferAL~L--------nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 220 MEKAHTAFEHLTRY--------CSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHHH--------CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHHHh--------CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 99999999999999 7764 8889999999988 49999999999999997544
No 216
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.04 E-value=0.00015 Score=67.38 Aligned_cols=105 Identities=15% Similarity=0.059 Sum_probs=86.2
Q ss_pred CChhHHHHHHHHHHHHHH-----------hhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc-----CCH
Q psy597 288 DHPDVATMLNILALVYRD-----------QNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKR-----GKY 351 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~-----------~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~-----g~~ 351 (546)
..+..+..+++.|.+... .+....|...+++++++ ...-....+|..+|.+|... |+.
T Consensus 147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL------DP~~~~GsA~~~LG~lY~~vPp~~gGd~ 220 (301)
T 3u64_A 147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL------WPSYQEGAVWNVLTKFYAAAPESFGGGM 220 (301)
T ss_dssp CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH------CTTHHHHHHHHHHHHHHHHSCTTTTCCH
T ss_pred cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh------CCCcccCHHHHHHHHHHHhCCCccCCCH
Confidence 457777778887776644 13467889999999998 22333577999999999995 999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChHH-HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHH
Q psy597 352 KEAEPLCKRALEIREKVLGKEHPDV-AKQLNNLALLCQN-QSKYEEVERYYQRALEI 406 (546)
Q Consensus 352 ~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~~~~-~g~~~eA~~~~~~al~~ 406 (546)
++|..+|++|+++. |.. ..+++.+|..+.. .|++++|..++++++..
T Consensus 221 ekA~~~ferAL~Ln--------P~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a 269 (301)
T 3u64_A 221 EKAHTAFEHLTRYC--------SAHDPDHHITYADALCIPLNNRAGFDEALDRALAI 269 (301)
T ss_dssp HHHHHHHHHHHHHC--------CTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC--------CCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence 99999999999994 754 8888999999988 59999999999999997
No 217
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=98.02 E-value=0.0017 Score=63.88 Aligned_cols=191 Identities=13% Similarity=0.053 Sum_probs=135.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHH
Q psy597 214 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVA 293 (546)
Q Consensus 214 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 293 (546)
.-.+.+.+|..|...|++++-..++......+.... ....+
T Consensus 18 ~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------kak~~ 58 (394)
T 3txn_A 18 KEQGILQQGELYKQEGKAKELADLIKVTRPFLSSIS---------------------------------------KAKAA 58 (394)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSC---------------------------------------HHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc---------------------------------------hHHHH
Confidence 346889999999999999998888876654433222 11122
Q ss_pred HHHHHHHHHHHH-hhcHHHHHHHHHHHHHHHHHhcCCCCHHHHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q psy597 294 TMLNILALVYRD-QNKYKEAANLLNDALTIREKTLGENHAAVAA--TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 370 (546)
Q Consensus 294 ~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 370 (546)
.+...+-..+.. -+..+.-++.+.++++.+... ...... .-..+|.+|+..|+|.+|...+.+.+....+.
T Consensus 59 k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~----~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~-- 132 (394)
T 3txn_A 59 KLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQE----KRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKL-- 132 (394)
T ss_dssp HHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS--
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc--
Confidence 222222222221 133444566666666665542 222222 44589999999999999999999999888665
Q ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhh
Q psy597 371 KEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYL-KQGKYKEAEILYKQVLTRA 449 (546)
Q Consensus 371 ~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~-~~g~~~eA~~~~~~al~~~ 449 (546)
++......++..-..+|...+++.++..+|.+|........ +++...+.....-|.++. ..++|..|..+|-+++..+
T Consensus 133 dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~-~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f 211 (394)
T 3txn_A 133 DDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIY-CPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGF 211 (394)
T ss_dssp SCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCC-CCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence 44567788888999999999999999999999998876542 222345666777788888 8999999999999998654
Q ss_pred h
Q psy597 450 H 450 (546)
Q Consensus 450 ~ 450 (546)
.
T Consensus 212 ~ 212 (394)
T 3txn_A 212 D 212 (394)
T ss_dssp T
T ss_pred c
Confidence 3
No 218
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.94 E-value=2e-05 Score=60.82 Aligned_cols=70 Identities=19% Similarity=0.121 Sum_probs=63.0
Q ss_pred hHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q psy597 374 PDVAKQLNNLALLCQNQSK---YEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAH 450 (546)
Q Consensus 374 ~~~~~~~~~la~~~~~~g~---~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~ 450 (546)
|..+..+..+|.+++..++ .++|...+++++.+ +|....++..+|..++..|+|++|+.++++++...+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--------dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--------EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5557788899999986666 79999999999999 999999999999999999999999999999998765
Q ss_pred h
Q psy597 451 E 451 (546)
Q Consensus 451 ~ 451 (546)
.
T Consensus 75 ~ 75 (93)
T 3bee_A 75 P 75 (93)
T ss_dssp T
T ss_pred C
Confidence 4
No 219
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.84 E-value=0.00015 Score=60.67 Aligned_cols=90 Identities=11% Similarity=0.066 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhcCCCCh-HHHHHHHHHH
Q psy597 309 YKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRG---KYKEAEPLCKRALEIREKVLGKEHP-DVAKQLNNLA 384 (546)
Q Consensus 309 ~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la 384 (546)
...+...|.+.+.. .+....+.+++|.++...+ ++++++.+++..++.. .| ....+++++|
T Consensus 14 l~~~~~~y~~e~~~--------~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-------~p~~~rd~lY~LA 78 (152)
T 1pc2_A 14 LLKFEKKFQSEKAA--------GSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-------SKEEQRDYVFYLA 78 (152)
T ss_dssp HHHHHHHHHHHHHT--------TCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcc--------CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-------CccchHHHHHHHH
Confidence 34455555555432 2234788999999999988 6779999999998862 25 6688999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Q psy597 385 LLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKT 421 (546)
Q Consensus 385 ~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~ 421 (546)
..|++.|+|++|+.++++++++ .|.+..+
T Consensus 79 v~~~kl~~Y~~A~~y~~~lL~i--------eP~n~QA 107 (152)
T 1pc2_A 79 VGNYRLKEYEKALKYVRGLLQT--------EPQNNQA 107 (152)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHH--------CTTCHHH
T ss_pred HHHHHccCHHHHHHHHHHHHhc--------CCCCHHH
Confidence 9999999999999999999999 7755444
No 220
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.80 E-value=0.0039 Score=64.03 Aligned_cols=121 Identities=8% Similarity=-0.026 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc--------------------
Q psy597 352 KEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKL-------------------- 411 (546)
Q Consensus 352 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~-------------------- 411 (546)
......|++++... |.....|...+..+...|+.+.|...|++|+.. ....
T Consensus 196 ~Rv~~~ye~al~~~--------p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~ 266 (493)
T 2uy1_A 196 SRMHFIHNYILDSF--------YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLK 266 (493)
T ss_dssp HHHHHHHHHHHHHT--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHH
T ss_pred HHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHH
Confidence 34566777777764 566788999999999999999999999999875 1100
Q ss_pred -----CC-------CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhc-hhhHHHH
Q psy597 412 -----GP-------DDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKN-KAKNREK 478 (546)
Q Consensus 412 -----~~-------~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~ 478 (546)
.. ..+....+|...+....+.|..+.|...|+++ . .+. .........+......+ +.+.|..
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~~---~~~~v~i~~A~lE~~~~~d~~~ar~ 341 (493)
T 2uy1_A 267 RKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G-NEG---VGPHVFIYCAFIEYYATGSRATPYN 341 (493)
T ss_dssp HHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T-TSC---CCHHHHHHHHHHHHHHHCCSHHHHH
T ss_pred HHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h-CCC---CChHHHHHHHHHHHHHCCChHHHHH
Confidence 00 00112234555566666678899999999988 3 221 11111111122222233 5888888
Q ss_pred HHHHHHHH
Q psy597 479 YYQRALEI 486 (546)
Q Consensus 479 ~~~~Al~~ 486 (546)
.|+.++..
T Consensus 342 ife~al~~ 349 (493)
T 2uy1_A 342 IFSSGLLK 349 (493)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888864
No 221
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.79 E-value=0.00014 Score=60.86 Aligned_cols=71 Identities=10% Similarity=-0.019 Sum_probs=62.7
Q ss_pred hHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhcCCCC-h-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 374 PDVAKQLNNLALLCQNQS---KYEEVERYYQRALEIYELKLGPDD-S-NVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 374 ~~~~~~~~~la~~~~~~g---~~~eA~~~~~~al~~~~~~~~~~~-~-~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
+....+.+++|+++...+ +.++++..++..++. + | ...+++++||..|++.|+|++|..+++.++++
T Consensus 29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~--------~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK--------GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH--------SCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--------CCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 456788999999999988 667999999999887 4 6 67899999999999999999999999999998
Q ss_pred hhhc
Q psy597 449 AHER 452 (546)
Q Consensus 449 ~~~~ 452 (546)
.|.+
T Consensus 101 eP~n 104 (152)
T 1pc2_A 101 EPQN 104 (152)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 6654
No 222
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=97.77 E-value=0.0054 Score=60.26 Aligned_cols=211 Identities=15% Similarity=0.117 Sum_probs=147.3
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 293 ATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGK-RGKYKEAEPLCKRALEIREKVLGK 371 (546)
Q Consensus 293 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~ 371 (546)
-.+.+.+|.+|...|++++-.+++.......... .....+.....+-..+.. -+..+.-++.+..+++.+...
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~--- 92 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSI---SKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQE--- 92 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGS---CHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh---chHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH---
Confidence 4678899999999999999998888776655332 123344545555555444 356677788888888876532
Q ss_pred CChHHHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q psy597 372 EHPDVAK--QLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRA 449 (546)
Q Consensus 372 ~~~~~~~--~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~ 449 (546)
...... .-..+|.+|...|+|.+|...+.+.+.-+.+. .+......++..-..+|...|++.++...|.++....
T Consensus 93 -~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~--dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~ 169 (394)
T 3txn_A 93 -KRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKL--DDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTA 169 (394)
T ss_dssp -TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS--SCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhh
Confidence 122223 34589999999999999999999999987765 4467788899999999999999999999999998765
Q ss_pred hhcc---cCcccCCChhhHHHH-hhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCH
Q psy597 450 HERE---FGACDGDNKPIWQDR-QKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKY 515 (546)
Q Consensus 450 ~~~~---~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~ 515 (546)
.... ..........|..+. ..+++..|..+|-++...|.. .+.|....+...++.+-...++.
T Consensus 170 ~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~---~~~~~~~~~lkYlvL~aLl~~~r 236 (394)
T 3txn_A 170 NAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDS---VDSVKALTSLKYMLLCKIMLGQS 236 (394)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTT---TCHHHHHHHHHHHHHHHHHTTCG
T ss_pred ccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccc---cccHHHHHHHHHHHHHHHHcCCH
Confidence 3210 011112223344466 678888888887777655432 23455566666667776666664
No 223
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.73 E-value=0.00011 Score=56.64 Aligned_cols=68 Identities=24% Similarity=0.080 Sum_probs=59.9
Q ss_pred hhHHHHHHHHHHHHHHhhc---HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy597 290 PDVATMLNILALVYRDQNK---YKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 365 (546)
Q Consensus 290 ~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 365 (546)
|..+.++..+|.+++..++ .++|..++++++.+ +|....++..+|..++..|+|++|+.+++++++..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--------dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--------EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 5556788999999987766 79999999999998 56668899999999999999999999999998763
No 224
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.69 E-value=0.00042 Score=58.35 Aligned_cols=130 Identities=13% Similarity=-0.011 Sum_probs=94.1
Q ss_pred hHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q psy597 291 DVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGE-NHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 369 (546)
Q Consensus 291 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 369 (546)
...++++.-...++..|.|+.|+-....++.+....... .......++..+|.+++..|+|..|...|++|+...+.+.
T Consensus 18 ~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~ 97 (167)
T 3ffl_A 18 GSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALS 97 (167)
T ss_dssp ---CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-
T ss_pred ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHh
Confidence 344556666778888999999999999999887554111 1334577899999999999999999999999999876431
Q ss_pred CC-----------------CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q psy597 370 GK-----------------EHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCY 429 (546)
Q Consensus 370 ~~-----------------~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y 429 (546)
.. +.+....+.+.++.||...|++++|+..++.. |.....+.+...||.+|
T Consensus 98 k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I---------p~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 98 KTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI---------PSRQRTPKINMLLANLY 165 (167)
T ss_dssp -------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS---------CGGGCCHHHHHHHHHHC
T ss_pred cCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC---------CchhcCHHHHHHHHHHh
Confidence 11 11223468889999999999999999987643 22333455566677665
No 225
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.55 E-value=0.0017 Score=54.64 Aligned_cols=111 Identities=15% Similarity=0.083 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK-EHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGP 413 (546)
Q Consensus 335 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~ 413 (546)
..++..-...+...|.|+.|+.....++......... .......++..+|.+++..|+|..|..+|++|+...+.....
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~ 99 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT 99 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 3456666777889999999999999998886443111 122456789999999999999999999999999987743211
Q ss_pred -----------------CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy597 414 -----------------DDSNVAKTKNNLASCYLKQGKYKEAEILYKQV 445 (546)
Q Consensus 414 -----------------~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~a 445 (546)
+.+....+.+.++.||.++|++++|+..++.+
T Consensus 100 ~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 100 SKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp -----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred CCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 11223478899999999999999999887654
No 226
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.39 E-value=0.0041 Score=63.92 Aligned_cols=94 Identities=14% Similarity=0.040 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhcCC
Q psy597 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQS-KYEEVERYYQRALEIYELKLGP 413 (546)
Q Consensus 335 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~eA~~~~~~al~~~~~~~~~ 413 (546)
..+|...+......+..+.|...|.+| .. + +.....+...|.+....+ +++.|...|+.+++.+ +
T Consensus 286 ~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~------~--~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-----~ 351 (493)
T 2uy1_A 286 DLLRINHLNYVLKKRGLELFRKLFIEL-GN------E--GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-----P 351 (493)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHH-TT------S--CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-----T
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHh-hC------C--CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-----C
Confidence 456667777777777888888888887 21 1 112334555565555545 5888888888888762 2
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy597 414 DDSNVAKTKNNLASCYLKQGKYKEAEILYKQV 445 (546)
Q Consensus 414 ~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~a 445 (546)
+.| ..+...+......|+.+.|..+|+++
T Consensus 352 ~~~---~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 352 DST---LLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp TCH---HHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred CCH---HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 233 33444566677788888888777775
No 227
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.17 E-value=0.088 Score=53.01 Aligned_cols=196 Identities=17% Similarity=0.166 Sum_probs=129.7
Q ss_pred cCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHh-hHHHHHhhhhhhH--HHHHHHHHHHHhc
Q psy597 207 AGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAET-LEDCALRSRKESY--DIVKQAKVAQILG 283 (546)
Q Consensus 207 ~~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~-~~~~~l~~~~~~~--~~~~~~~~~~~l~ 283 (546)
.+.+.+...+++..+...++..|+|+....++. .+.+..+....+.. ............. +..........+.
T Consensus 48 ~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~----~Lskkr~qlk~ai~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~ 123 (445)
T 4b4t_P 48 QASDLASSKEVLAKIVDLLASRNKWDDLNEQLT----LLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIR 123 (445)
T ss_dssp SSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHH----HHHTTTTTSHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHCCS
T ss_pred hccchhhHHHHHHHHHHHHHHhccHHHHHHHHH----HHHHHhhhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence 456667778889999999999999988766553 22233333333332 2222222222111 1111222222222
Q ss_pred cCCCC----ChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy597 284 SGGHD----HPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCK 359 (546)
Q Consensus 284 ~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 359 (546)
..... ....+.+...|+.+|...|++.+|...+.....-.... .+.......+.....+|...+++.+|...+.
T Consensus 124 ~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~--~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ 201 (445)
T 4b4t_P 124 VVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGS--MEMSEKIQFILEQMELSILKGDYSQATVLSR 201 (445)
T ss_dssp SSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSS--SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 21111 12367788899999999999999999999876432221 3445667888999999999999999999999
Q ss_pred HHHHHHHHhcCCCCh-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy597 360 RALEIREKVLGKEHP-DVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELK 410 (546)
Q Consensus 360 ~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~ 410 (546)
++....... ..+| .....+...|.++...++|.+|-.+|..+...+...
T Consensus 202 ki~~~~~~~--~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~ 251 (445)
T 4b4t_P 202 KILKKTFKN--PKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIK 251 (445)
T ss_dssp HHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccc--CCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccccc
Confidence 986544333 2233 346677888999999999999999999998875543
No 228
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.05 E-value=0.0028 Score=52.19 Aligned_cols=108 Identities=17% Similarity=0.116 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHcCCH------HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy597 335 AATLNNLAVLYGKRGKY------KEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYE 408 (546)
Q Consensus 335 ~~~~~~la~~~~~~g~~------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~ 408 (546)
.+.|..........|+. ++-++.|++|+..............+..|...|.. ...++.++|...|+.++.+
T Consensus 13 yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~-- 89 (161)
T 4h7y_A 13 PEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARAN-- 89 (161)
T ss_dssp HHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHH--
Confidence 55677777777777988 88888999988765222122334567788888866 5669999999999999997
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 409 LKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 409 ~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
+...+.++...|..-.++|+...|...+.+++.+.+.
T Consensus 90 ------hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 90 ------CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp ------CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred ------hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 3334889999999999999999999999999997654
No 229
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.98 E-value=0.0054 Score=50.49 Aligned_cols=109 Identities=15% Similarity=0.108 Sum_probs=85.1
Q ss_pred hHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccC
Q psy597 212 PARLRTLHNLVIQYASQGRY------EVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSG 285 (546)
Q Consensus 212 p~~~~~~~~lg~~~~~~g~~------~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~ 285 (546)
|.+++.|..........|+. +.-+..|++|+...+...
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k------------------------------------ 53 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDK------------------------------------ 53 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGG------------------------------------
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccc------------------------------------
Confidence 55566777777777777998 777788888887654432
Q ss_pred CCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy597 286 GHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 365 (546)
Q Consensus 286 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 365 (546)
.......+..|...|.. ...++.++|...|+.++.+ +...+.+|...|..-.++|+...|...+.+|+...
T Consensus 54 ~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~--------hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 54 YGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARAN--------CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp GTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHH--------CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHH--------hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 22455667777777755 5669999999999999987 22238899999999999999999999999999974
No 230
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.80 E-value=0.075 Score=53.53 Aligned_cols=154 Identities=12% Similarity=0.091 Sum_probs=90.4
Q ss_pred CCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHH
Q psy597 286 GHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYG-KRGKYKEAEPLCKRALEI 364 (546)
Q Consensus 286 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~ 364 (546)
..+.+....++..+..++...|+++...+++.-... ..|. .+...........-|. .....+. ......++.
T Consensus 49 ~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk----kr~q-lk~ai~~~V~~~~~~l~~~~~~d~--~~~~~~i~~ 121 (445)
T 4b4t_P 49 ASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK----KHGQ-LKLSIQYMIQKVMEYLKSSKSLDL--NTRISVIET 121 (445)
T ss_dssp SCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT----TTTT-SHHHHHHHHHHHHHHHHHHCTTHH--HHHHHHHHC
T ss_pred ccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH----Hhhh-hHHHHHHHHHHHHHHHhcCCchhH--HHHHHHHHH
Confidence 335666677788888899999999887666543221 1111 1222222222222222 1222111 111222222
Q ss_pred HHHhcCCC---ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHH
Q psy597 365 REKVLGKE---HPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEIL 441 (546)
Q Consensus 365 ~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~ 441 (546)
......+. ....+.....|+.+|...|++.+|...+.....-... ..+.......+.....+|...+++..|...
T Consensus 122 l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~--~~~~~~kve~~l~q~rl~l~~~d~~~a~~~ 199 (445)
T 4b4t_P 122 IRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYG--SMEMSEKIQFILEQMELSILKGDYSQATVL 199 (445)
T ss_dssp CSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCS--SSCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh--cccHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 11111111 1235667788999999999999999999887643211 123445677888899999999999999999
Q ss_pred HHHHHHh
Q psy597 442 YKQVLTR 448 (546)
Q Consensus 442 ~~~al~~ 448 (546)
+.++...
T Consensus 200 ~~ki~~~ 206 (445)
T 4b4t_P 200 SRKILKK 206 (445)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9987653
No 231
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.77 E-value=0.0086 Score=48.12 Aligned_cols=86 Identities=15% Similarity=0.176 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhhhhcccCcccCCChhhHHHHhh
Q psy597 394 EEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKE---AEILYKQVLTRAHEREFGACDGDNKPIWQDRQK 470 (546)
Q Consensus 394 ~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~e---A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 470 (546)
..+...|.+.+.. .+....+.+++|+++.+..+... ++.+++..+.
T Consensus 18 ~~~~~~y~~e~~~--------~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~----------------------- 66 (126)
T 1nzn_A 18 LKFEKKFQSEKAA--------GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP----------------------- 66 (126)
T ss_dssp HHHHHHHHHHHHH--------SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT-----------------------
T ss_pred HHHHHHHHHHhcc--------CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-----------------------
Confidence 3444555555443 33456778888888888776655 5555555443
Q ss_pred chhhHHHHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Q psy597 471 NKAKNREKYYQRALEIYELKLGPDDS-NVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 532 (546)
Q Consensus 471 ~~~~~A~~~~~~Al~~~~~~~~~~~~-~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~~ 532 (546)
.+.| ....+++.||..+++.|+|++|+.+++..+++-|++
T Consensus 67 ----------------------~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 67 ----------------------KGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN 107 (126)
T ss_dssp ----------------------TSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred ----------------------cCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC
Confidence 2234 567889999999999999999999999999988765
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.58 E-value=0.023 Score=45.57 Aligned_cols=84 Identities=13% Similarity=0.066 Sum_probs=62.3
Q ss_pred cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHHHHHhcCCCCh-HHHHHHHHH
Q psy597 308 KYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKE---AEPLCKRALEIREKVLGKEHP-DVAKQLNNL 383 (546)
Q Consensus 308 ~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~~~~~~~~~~-~~~~~~~~l 383 (546)
....+...|.+.+.. .+....+.+++|+++....+... ++.+++..+. .+.| ..-.+++.|
T Consensus 16 ~l~~~~~~y~~e~~~--------~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~-------~~~p~~~Rd~lY~L 80 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAA--------GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP-------KGSKEEQRDYVFYL 80 (126)
T ss_dssp HHHHHHHHHHHHHHH--------SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT-------TSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc--------CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-------cCCcchHHHHHHHH
Confidence 344455555555442 12336788999999999887766 6666655443 3335 678899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Q psy597 384 ALLCQNQSKYEEVERYYQRALEI 406 (546)
Q Consensus 384 a~~~~~~g~~~eA~~~~~~al~~ 406 (546)
|..+++.|+|++|..+++..+++
T Consensus 81 Avg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 81 AVGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHh
Confidence 99999999999999999999999
No 233
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=96.18 E-value=0.91 Score=43.12 Aligned_cols=218 Identities=13% Similarity=0.048 Sum_probs=120.2
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKY-KEAEPLCKRALEIRE 366 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~ 366 (546)
.......+++.=+..+...|++..|.++..-.++.+.+..-+-+ ......+..++.....- ..=..+..+++....
T Consensus 50 ~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~---~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~ 126 (336)
T 3lpz_A 50 NWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVD---GASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSK 126 (336)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCC---HHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHh
Confidence 34445555555566666666666666666666666555411111 12344444444444321 122456777777766
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH--------HHHHHHHHhcCCCChHHHHHHHHHH-HHHHHcCCHHH
Q psy597 367 KVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQ--------RALEIYELKLGPDDSNVAKTKNNLA-SCYLKQGKYKE 437 (546)
Q Consensus 367 ~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~--------~al~~~~~~~~~~~~~~~~~~~~La-~~y~~~g~~~e 437 (546)
+. |......+..+..+|..|+..+++.+|..+|- ...++.-.....+.+.....+...| ..|+..++...
T Consensus 127 ~~-g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~dlfiaRaVL~yL~l~n~~~ 205 (336)
T 3lpz_A 127 KF-GDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTAPLYCARAVLPYLLVANVRA 205 (336)
T ss_dssp HH-SSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHTTCHHH
T ss_pred hc-CCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhCCHHH
Confidence 53 33334556788899999999999999988872 1112222221122344444444444 44788999999
Q ss_pred HHHHHHHHHHhhhhcccC----------------cccCCChhhHH---HHhhchhhHHHHHHHHHHHHHHHHcCCCCHHH
Q psy597 438 AEILYKQVLTRAHEREFG----------------ACDGDNKPIWQ---DRQKNKAKNREKYYQRALEIYELKLGPDDSNV 498 (546)
Q Consensus 438 A~~~~~~al~~~~~~~~~----------------~~~~~~~~~~~---~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~ 498 (546)
|...+....+........ ...+..+..+. ....+. ...|....+.|...+..+.+..
T Consensus 206 A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLLNFl~lLllt~q~~~----~~lF~~L~~~Y~~~l~rd~~~~ 281 (336)
T 3lpz_A 206 ANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLLNFISMLLLSVQKGS----PDLFRQLKSKYEANLNELNGIW 281 (336)
T ss_dssp HHHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHHHHHHHHHHHHHSCC----HHHHHHHHHHTHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHhhcCCCccccccccCCcccccCCCCchHHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHHhcHHHH
Confidence 999887766654221110 00111112222 122222 3456666666665555443366
Q ss_pred HHHHHHHHHHHHHcC
Q psy597 499 AKTKNNLASCYLKQG 513 (546)
Q Consensus 499 ~~~~~~La~~y~~~g 513 (546)
...+..+|.+|+...
T Consensus 282 ~~~L~~IG~~YFgi~ 296 (336)
T 3lpz_A 282 DTALELIAEMYFGIQ 296 (336)
T ss_dssp HHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHcCCC
Confidence 778889999998664
No 234
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.85 E-value=0.03 Score=56.25 Aligned_cols=108 Identities=19% Similarity=0.094 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 334 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGP 413 (546)
Q Consensus 334 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~ 413 (546)
...++..+|..|...|+++.|.+.|.++.... .........+..+..++...+++..+..++.++..+.... +
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~-----~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~--~ 202 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKA-----ISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKG--G 202 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHH-----TCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC--C
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcC--C
Confidence 45678899999999999999999999988765 2235567888888999999999999999999998775443 3
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 414 DDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 414 ~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
+...........|.++...++|.+|..+|-.++..
T Consensus 203 d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 203 DWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp CTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 44445566667788888999999999999888764
No 235
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=95.81 E-value=1.3 Score=41.78 Aligned_cols=157 Identities=11% Similarity=0.007 Sum_probs=97.5
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYK-EAEPLCKRALEIRE 366 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~~ 366 (546)
........++.-+..+...|++..|.++..-.++.+.+. +..+ .......+..++.....-+ .=..+..+++....
T Consensus 48 ~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~--~~~~-~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~ 124 (312)
T 2wpv_A 48 SYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLA--EVKV-DDISVARLVRLIAELDPSEPNLKDVITGMNNWSI 124 (312)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCCC-SHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHc--CCCC-CHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHh
Confidence 344555666666677777777777777776666666664 2111 1233444555544433211 22567777777766
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH------------HHHHHHhcCCCChHHHHHHHHHHH-HHHHcC
Q psy597 367 KVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRA------------LEIYELKLGPDDSNVAKTKNNLAS-CYLKQG 433 (546)
Q Consensus 367 ~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~a------------l~~~~~~~~~~~~~~~~~~~~La~-~y~~~g 433 (546)
+..+ .....+..+..+|..|+..|++.+|..+|-.+ .+.+.. .+.+.|.....+...+. .|+..|
T Consensus 125 ~~g~-~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~-~~~~~~~e~dlf~~RaVL~yL~l~ 202 (312)
T 2wpv_A 125 KFSE-YKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQ-VDDIEDSTVAEFFSRLVFNYLFIS 202 (312)
T ss_dssp HTSS-CTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHH-TTCCCHHHHHHHHHHHHHHHHHTT
T ss_pred hcCC-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHh-cCCCCcchHHHHHHHHHHHHHHhc
Confidence 6522 23445678899999999999999999987421 111111 11135666666655554 477899
Q ss_pred CHHHHHHHHHHHHHhh
Q psy597 434 KYKEAEILYKQVLTRA 449 (546)
Q Consensus 434 ~~~eA~~~~~~al~~~ 449 (546)
+...|...+....+..
T Consensus 203 n~~~A~~~~~~f~~~~ 218 (312)
T 2wpv_A 203 NISFAHESKDIFLERF 218 (312)
T ss_dssp BHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999998877654
No 236
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.55 E-value=0.04 Score=55.29 Aligned_cols=110 Identities=13% Similarity=0.055 Sum_probs=88.3
Q ss_pred hhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q psy597 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 369 (546)
Q Consensus 290 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 369 (546)
.....++..+|..|...|+++.|.+.|.++...+ .........+..+..++...+++..+..++.++.......
T Consensus 128 ~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~-----~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~- 201 (429)
T 4b4t_R 128 LEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKA-----ISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKG- 201 (429)
T ss_dssp CCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHH-----TCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcC-
Confidence 3345678889999999999999999999988765 2234557889999999999999999999999997775432
Q ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 370 GKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406 (546)
Q Consensus 370 ~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 406 (546)
++...........|.++...++|..|-.+|-.++..
T Consensus 202 -~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 202 -GDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp -CCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 344444566667788888999999999999887665
No 237
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.33 E-value=0.28 Score=52.33 Aligned_cols=123 Identities=15% Similarity=0.113 Sum_probs=83.9
Q ss_pred hhc-HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHHHhcCC---C------
Q psy597 306 QNK-YKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYG---KRGKYKEAEPLCKRALEIREKVLGK---E------ 372 (546)
Q Consensus 306 ~g~-~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~~~~~~~---~------ 372 (546)
.++ ++.|+.++++.... .|... ++...+.+.. ...+--+|+....++++........ .
T Consensus 261 t~~~~~~a~~~le~L~~~--------~p~~~-~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKK--------DPIHD-IYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp CGGGHHHHHHHHHHHHHH--------CGGGH-HHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred cccHHHHHHHHHHHHHhh--------CCchh-HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 445 57899999887654 23222 2222222221 2234456777777777532211100 0
Q ss_pred -ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy597 373 -HPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQV 445 (546)
Q Consensus 373 -~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~a 445 (546)
.+.....+..-+..+...|+|+-|+.+.++|+.. .|....+|..|+.+|..+|+|+.|+-.+..+
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--------aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--------ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--------CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 1233445666788888999999999999999999 8999999999999999999999999777655
No 238
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=94.75 E-value=0.21 Score=54.52 Aligned_cols=106 Identities=12% Similarity=-0.039 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q psy597 332 AAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKL 411 (546)
Q Consensus 332 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~ 411 (546)
.....+|+.+-..|.+.|+.++|..+|.+..+...+-. .....+|+.|-..|++.|++++|...|++..+.
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~----~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~----- 194 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRK----LLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA----- 194 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHT----TCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCC----CCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----
Confidence 34456789999999999999999999988765432211 224678999999999999999999999998764
Q ss_pred CCCChHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHh
Q psy597 412 GPDDSNVAKTKNNLASCYLKQGKY-KEAEILYKQVLTR 448 (546)
Q Consensus 412 ~~~~~~~~~~~~~La~~y~~~g~~-~eA~~~~~~al~~ 448 (546)
+-.| ...+|+.+-.++.+.|+. ++|..+|++....
T Consensus 195 -G~~P-DvvTYntLI~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 195 -GLTP-DLLSYAAALQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp -TCCC-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred -CCCC-cHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 3344 456788888899999985 7888999887764
No 239
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.71 E-value=0.25 Score=39.78 Aligned_cols=69 Identities=10% Similarity=0.016 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhh
Q psy597 376 VAKQLNNLALLCQNQSKY---EEVERYYQRALEIYELKLGPDDS-NVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451 (546)
Q Consensus 376 ~~~~~~~la~~~~~~g~~---~eA~~~~~~al~~~~~~~~~~~~-~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~ 451 (546)
...+.+++|+++....+. ..++..++..+.. +| ..-.+++.||..+.+.|+|.+|..+.+.++.+.|.
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~--------~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH--------CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--------CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 457788999999887765 3577777766654 44 57889999999999999999999999999998655
Q ss_pred c
Q psy597 452 R 452 (546)
Q Consensus 452 ~ 452 (546)
+
T Consensus 111 N 111 (134)
T 3o48_A 111 N 111 (134)
T ss_dssp C
T ss_pred C
Confidence 3
No 240
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.62 E-value=0.43 Score=50.88 Aligned_cols=89 Identities=20% Similarity=0.171 Sum_probs=66.8
Q ss_pred hcHHHHHHHHHHHHHHHHHhc---CCC-------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHH
Q psy597 307 NKYKEAANLLNDALTIREKTL---GEN-------HAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDV 376 (546)
Q Consensus 307 g~~~~A~~~~~~al~~~~~~~---g~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 376 (546)
.+--+|+..+.++++...... ... .+.....+..-+..+...|+|+-|+.+.++|+... |..
T Consensus 299 ~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a--------Pse 370 (754)
T 4gns_B 299 TKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA--------LDS 370 (754)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------SSC
T ss_pred hhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC--------chh
Confidence 345667777777775322110 011 12234456666888889999999999999999995 999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy597 377 AKQLNNLALLCQNQSKYEEVERYYQRA 403 (546)
Q Consensus 377 ~~~~~~la~~~~~~g~~~eA~~~~~~a 403 (546)
..+|..|+.+|..+|+|+.|+-.+.-+
T Consensus 371 F~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 371 FESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 999999999999999999999887655
No 241
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=94.32 E-value=0.54 Score=51.44 Aligned_cols=108 Identities=13% Similarity=0.031 Sum_probs=85.0
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
........++.+-..|...|+.++|..+|.+......+-. .|. ..+|+.|-..|.+.|++++|..+|.+..+.
T Consensus 122 ~~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~---~Pd-vvTYNtLI~Glck~G~~~eA~~Lf~eM~~~--- 194 (1134)
T 3spa_A 122 QLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRK---LLT-LDMYNAVMLGWARQGAFKELVYVLFMVKDA--- 194 (1134)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHT---TCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT---
T ss_pred HHHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCC---CCC-HhHHHHHHHHHHhCCCHHHHHHHHHHHHHc---
Confidence 4556677899999999999999999999988765432221 122 568999999999999999999999998765
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHH
Q psy597 368 VLGKEHPDVAKQLNNLALLCQNQSKY-EEVERYYQRALEI 406 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~~~g~~-~eA~~~~~~al~~ 406 (546)
+-.| ...+|+.+-.++.+.|+. ++|..+|++..+.
T Consensus 195 ---G~~P-DvvTYntLI~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 195 ---GLTP-DLLSYAAALQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp ---TCCC-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred ---CCCC-cHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 2234 466778888888898985 7889999988775
No 242
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=94.27 E-value=0.97 Score=37.87 Aligned_cols=99 Identities=20% Similarity=0.141 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----------
Q psy597 295 MLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI---------- 364 (546)
Q Consensus 295 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------- 364 (546)
.-..++.+++..|+|..|+-++... ..+.+.+.-+.||....+|..|+..++..++-
T Consensus 35 Y~lL~~I~LyyngEY~R~Lf~L~~l-------------NT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~ 101 (242)
T 3kae_A 35 YRMLMSIVLYLNGEYTRALFHLHKL-------------NTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDA 101 (242)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTC-------------CBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCH
T ss_pred HHhhhhhhhhhcchHhHHHHHHHhc-------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccccc
Confidence 3456788888999998887665431 12445667788999999999999999998832
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 365 REKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406 (546)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 406 (546)
.-+.+--+..+.-..+..+|.++...|+.++|+.+|.....+
T Consensus 102 ~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~ 143 (242)
T 3kae_A 102 RIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK 143 (242)
T ss_dssp HHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence 111111223445567888999999999999999999999887
No 243
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.25 E-value=0.45 Score=38.30 Aligned_cols=64 Identities=16% Similarity=0.101 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 335 AATLNNLAVLYGKRGKY---KEAEPLCKRALEIREKVLGKEHP-DVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406 (546)
Q Consensus 335 ~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 406 (546)
..+.+++|+++.+..+. .+++.+++..+.. +| ..-.+++.||..+++.|+|++|..+.+..+++
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~--------~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH--------CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--------CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 57888999999888765 4577777776654 24 57889999999999999999999999999998
No 244
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=94.25 E-value=3.7 Score=38.65 Aligned_cols=194 Identities=12% Similarity=-0.031 Sum_probs=121.8
Q ss_pred HHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q psy597 304 RDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNL 383 (546)
Q Consensus 304 ~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 383 (546)
...|+|-+|-..++.....+.+. .......+.++.-+..+.+.|++..|.++..-.++..++..- +........+
T Consensus 24 I~~G~yYEAhQ~~Rtl~~Ry~~~--~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~---~~~~~~~~rl 98 (312)
T 2wpv_A 24 IKAGDYYEAHQTLRTIANRYVRS--KSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEV---KVDDISVARL 98 (312)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---CCSHHHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCC---CCCHHHHHHH
Confidence 34577777777777766665554 445556667777778888889999988888888877766522 2223345566
Q ss_pred HHHHHHcCCH-HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCCh
Q psy597 384 ALLCQNQSKY-EEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNK 462 (546)
Q Consensus 384 a~~~~~~g~~-~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~ 462 (546)
..++.....- ..=..+.++++....+..+ .....+..+..+|..|++.|++.+|..+|--.-
T Consensus 99 ~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~-~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~---------------- 161 (312)
T 2wpv_A 99 VRLIAELDPSEPNLKDVITGMNNWSIKFSE-YKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT---------------- 161 (312)
T ss_dssp HHHHTTCCTTCTTHHHHHHHHHHHHHHTSS-CTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC----------------
T ss_pred HHHHHHCCCCCchHHHHHHHHHHHHhhcCC-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC----------------
Confidence 6666553322 2336778888888766532 234456788999999999999999998874211
Q ss_pred hhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHhh
Q psy597 463 PIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLAS-CYLKQGKYKEAEILYKQVLTRAH 530 (546)
Q Consensus 463 ~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~-~y~~~g~~~~A~~~~~~al~~~~ 530 (546)
.+.+..+..-..+.+ .....+.|.....+...+. .|...|+...|...+....+...
T Consensus 162 ----------~~s~~~~a~~l~~w~-~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~~~~ 219 (312)
T 2wpv_A 162 ----------HDSMIKYVDLLWDWL-CQVDDIEDSTVAEFFSRLVFNYLFISNISFAHESKDIFLERFI 219 (312)
T ss_dssp ----------HHHHHHHHHHHHHHH-HHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHH
T ss_pred ----------CccHHHHHHHHHHHH-HhcCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Confidence 111111122222222 2221124555555544443 56789999999999998877653
No 245
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=94.08 E-value=0.31 Score=30.81 Aligned_cols=47 Identities=34% Similarity=0.410 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q psy597 100 KQKLRTQVRRLVQENAWLRDELANTQQKLQSSEQANSQLEEEKKHLE 146 (546)
Q Consensus 100 ~~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~~~~~qlee~~~~l~ 146 (546)
..+|-.||.-|..||..||.||.+....+.+.|.......+-.++++
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq 51 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQ 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHc
Confidence 35678899999999999999999999999988888777777766653
No 246
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=93.74 E-value=0.2 Score=50.82 Aligned_cols=80 Identities=20% Similarity=0.282 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q psy597 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPD 414 (546)
Q Consensus 335 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~ 414 (546)
..++..||.+......+..|..+|.+|..+. |..+..++.||.+....|+.-+|+-+|-+++..
T Consensus 152 hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~--------P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~-------- 215 (497)
T 1ya0_A 152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLV--------PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV-------- 215 (497)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS--------
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHHHHhC--------CCCCchHHHHHHHHhcccccHHHHHHHHHHHhc--------
Confidence 3477889999999999999999999999994 999999999999999999999999999998864
Q ss_pred ChHHHHHHHHHHHHHH
Q psy597 415 DSNVAKTKNNLASCYL 430 (546)
Q Consensus 415 ~~~~~~~~~~La~~y~ 430 (546)
......+..||..++.
T Consensus 216 ~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 216 KFPFPAASTNLQKALS 231 (497)
T ss_dssp SBCCHHHHHHHHHHHH
T ss_pred CCCChhHHHHHHHHHH
Confidence 2223444555555544
No 247
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.62 E-value=1.2 Score=43.83 Aligned_cols=128 Identities=14% Similarity=0.035 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHH--HhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChh
Q psy597 214 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAA--ETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPD 291 (546)
Q Consensus 214 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a--~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (546)
....+...|......|+.+.|...+.+|+.++.... +... ..+...... . -...
T Consensus 114 ~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~--L~~~~~~~w~~~~r~----------~------------l~~~ 169 (388)
T 2ff4_A 114 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPV--LDDLRDFQFVEPFAT----------A------------LVED 169 (388)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSST--TGGGTTSTTHHHHHH----------H------------HHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCC--CCCCCchhHHHHHHH----------H------------HHHH
Confidence 444555556666678999999999999998763221 0000 000000000 0 0123
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 371 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 371 (546)
...+...++..+...|++.+++..+..++.. +|..-.++..+-.++...|+..+|+..|++........+|-
T Consensus 170 ~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~--------~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~ 241 (388)
T 2ff4_A 170 KVLAHTAKAEAEIACGRASAVIAELEALTFE--------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGI 241 (388)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3455677788899999999999999999877 56556788899999999999999999999999887766665
Q ss_pred CC
Q psy597 372 EH 373 (546)
Q Consensus 372 ~~ 373 (546)
++
T Consensus 242 ~P 243 (388)
T 2ff4_A 242 DP 243 (388)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 248
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.55 E-value=0.49 Score=38.61 Aligned_cols=72 Identities=11% Similarity=0.038 Sum_probs=56.3
Q ss_pred hHHHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q psy597 374 PDVAKQLNNLALLCQNQSKYE---EVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAH 450 (546)
Q Consensus 374 ~~~~~~~~~la~~~~~~g~~~---eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~ 450 (546)
.....+.+++|+++....+.. +++..++..+.. +....-.+++.||..++++|+|.+|..+.+.++++.|
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~-------~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP 108 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 108 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-------CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 345677889999999877655 566666666553 1225778899999999999999999999999999865
Q ss_pred hc
Q psy597 451 ER 452 (546)
Q Consensus 451 ~~ 452 (546)
.+
T Consensus 109 ~n 110 (144)
T 1y8m_A 109 NN 110 (144)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 249
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=92.80 E-value=1 Score=36.75 Aligned_cols=66 Identities=15% Similarity=0.096 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 334 VAATLNNLAVLYGKRGKYK---EAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406 (546)
Q Consensus 334 ~~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 406 (546)
...+.+++|+++....+.. +++.+++..+... +...-.+++.||..+++.|+|++|..+.+..+++
T Consensus 38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~-------~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-------ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC-------CSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-------ccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4678899999999887654 5777777766531 2257788999999999999999999999999998
No 250
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.75 E-value=1.5 Score=43.03 Aligned_cols=105 Identities=13% Similarity=0.043 Sum_probs=80.5
Q ss_pred HHHHhhcHHHHHHHHHHHHHHHHHhcCC---CCH-----------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 302 VYRDQNKYKEAANLLNDALTIREKTLGE---NHA-----------AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 302 ~~~~~g~~~~A~~~~~~al~~~~~~~g~---~~~-----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
.....|+...|...+.+|+.+++-.+-. +.+ ....+...++..+...|++.+|+..+..++..
T Consensus 124 ~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~--- 200 (388)
T 2ff4_A 124 HAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFE--- 200 (388)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---
Confidence 3344578888999999998876322111 111 12345566788889999999999999999887
Q ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q psy597 368 VLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPD 414 (546)
Q Consensus 368 ~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~ 414 (546)
+|..-.++..+-.++...|+..+|+..|+++...+..-+|-+
T Consensus 201 -----~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~ 242 (388)
T 2ff4_A 201 -----HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGID 242 (388)
T ss_dssp -----STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCC
T ss_pred -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 577778899999999999999999999999999877766644
No 251
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=92.74 E-value=1.1 Score=48.52 Aligned_cols=26 Identities=8% Similarity=0.057 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy597 378 KQLNNLALLCQNQSKYEEVERYYQRA 403 (546)
Q Consensus 378 ~~~~~la~~~~~~g~~~eA~~~~~~a 403 (546)
..|..+|..+...|+++.|+.+|.++
T Consensus 682 ~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 682 MKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 45566666666666666666666654
No 252
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.44 E-value=0.72 Score=46.52 Aligned_cols=150 Identities=10% Similarity=-0.015 Sum_probs=65.1
Q ss_pred HHHHHHhhcHHHHHHHHHHHH--HHHHHhc-CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------HHHH-h
Q psy597 300 ALVYRDQNKYKEAANLLNDAL--TIREKTL-GENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALE-------IREK-V 368 (546)
Q Consensus 300 a~~~~~~g~~~~A~~~~~~al--~~~~~~~-g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~~~~-~ 368 (546)
-..+...+++++|..+-...+ ....... ..-+...+.+|+..+.++...|+............. ..+. .
T Consensus 143 ~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~ 222 (523)
T 4b4t_S 143 QLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIAS 222 (523)
T ss_dssp ------------------------------------------------------------CHHHHHHHHTHHHHHHHHCC
T ss_pred HHHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHh
Confidence 344556788998888877655 2211110 011445677888888888888887664332222222 1111 1
Q ss_pred cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 369 LGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 369 ~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
...|....+..++.+-..|...+.|+.|..+..++.-. .. ...+...+..++.+|.++..+++|.+|..++..|+..
T Consensus 223 lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP--~~-~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 223 LKHDNETKAMLINLILRDFLNNGEVDSASDFISKLEYP--HT-DVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp SCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSC--TT-TSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred cccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCC--cc-cCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 22345567888889999999999999999999987411 00 0113345777889999999999999999999999987
Q ss_pred hhhc
Q psy597 449 AHER 452 (546)
Q Consensus 449 ~~~~ 452 (546)
+|..
T Consensus 300 ap~~ 303 (523)
T 4b4t_S 300 APHN 303 (523)
T ss_dssp CSCS
T ss_pred CCcc
Confidence 6653
No 253
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=91.92 E-value=0.71 Score=33.74 Aligned_cols=33 Identities=21% Similarity=0.313 Sum_probs=28.3
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhh
Q psy597 83 AQVMTALAGHLQNVEAEKQKLRTQVRRLVQENA 115 (546)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (546)
.+++..|.+.+..++.|++.||++|..+..+..
T Consensus 19 ~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ 51 (83)
T 2xdj_A 19 SQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLN 51 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 478888999999999999999999998877763
No 254
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=91.69 E-value=1.6 Score=35.47 Aligned_cols=64 Identities=22% Similarity=0.152 Sum_probs=55.1
Q ss_pred HHHHHHHH--HhhhhhHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q psy597 82 EAQVMTAL--AGHLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSSEQANSQLEEEKKHL 145 (546)
Q Consensus 82 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~~~~~qlee~~~~l 145 (546)
-.-||++| +.-+-.+..+...|+.++..+..+..-|.++|..++-++..+.+.+..+.+++..+
T Consensus 57 r~aVLaALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l 122 (138)
T 3hnw_A 57 LRTDMMYLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKY 122 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577765 77788888999999999999999999999999999999999999988888877654
No 255
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=91.69 E-value=5.3 Score=33.50 Aligned_cols=182 Identities=13% Similarity=0.093 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--H-------
Q psy597 336 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALE--I------- 406 (546)
Q Consensus 336 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~--~------- 406 (546)
..-..++.+++..|.|..|+-++.. -..+.+.+.-+.||....+|..|+..++..+. +
T Consensus 34 eY~lL~~I~LyyngEY~R~Lf~L~~-------------lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d 100 (242)
T 3kae_A 34 EYRMLMSIVLYLNGEYTRALFHLHK-------------LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVD 100 (242)
T ss_dssp CTHHHHHHHHHHTTCHHHHHHHHHT-------------CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCC
T ss_pred HHHhhhhhhhhhcchHhHHHHHHHh-------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccc
Confidence 3445678888999999988766532 33466667788899999999999999999883 1
Q ss_pred -HHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhccc------CcccCCChhhHHHHhhchhhHHHHH
Q psy597 407 -YELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREF------GACDGDNKPIWQDRQKNKAKNREKY 479 (546)
Q Consensus 407 -~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~A~~~ 479 (546)
--+.+--+..+....+..+|.++...|+.++|+.+|.......+-.+. ....+....-.--+..|+-.--..+
T Consensus 101 ~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnliyeN~vp~~~d~~~i~~~~~~~i~~~y 180 (242)
T 3kae_A 101 ARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENLLLENKVPQKRDKENVRQTGRRGIEEEY 180 (242)
T ss_dssp HHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHTTCCCCCC-----------CHHHHH
T ss_pred cccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHHHhhcCCCcccchHHHHhhhhccchhhh
Confidence 011111122344566788999999999999999999998875431100 0000000000000111111111222
Q ss_pred HHHHHHHHHH-------HcCCCCHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Q psy597 480 YQRALEIYEL-------KLGPDDSNVAK-TKNNLASCYLKQGKYKEAEILYKQVLTRAH 530 (546)
Q Consensus 480 ~~~Al~~~~~-------~~~~~~~~~~~-~~~~La~~y~~~g~~~~A~~~~~~al~~~~ 530 (546)
+.......+. .....-|.... ...+.+..|+..|-.++...+|....+..|
T Consensus 181 ~~d~~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP 239 (242)
T 3kae_A 181 VSDSIEFHESLSPSLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDP 239 (242)
T ss_dssp HHHHHHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hhhHHHHHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCC
Confidence 3333322221 01111344333 234567889999999999999998777544
No 256
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.58 E-value=0.35 Score=48.76 Aligned_cols=148 Identities=12% Similarity=0.038 Sum_probs=65.0
Q ss_pred HHHHcCCHHHHHHHHHHHHH--HHHHh-cCCCChHHHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHHHHHhc-C
Q psy597 344 LYGKRGKYKEAEPLCKRALE--IREKV-LGKEHPDVAKQLNNLALLCQNQSKYEEVERY-------YQRALEIYELKL-G 412 (546)
Q Consensus 344 ~~~~~g~~~~A~~~~~~al~--~~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~-------~~~al~~~~~~~-~ 412 (546)
.+...+++++|..+....+. ..... --.-++-.+.+|+.++.++...|+....... -...+..++... .
T Consensus 145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr 224 (523)
T 4b4t_S 145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLK 224 (523)
T ss_dssp ----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSC
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcc
Confidence 45567889999888876652 21110 0011344567788888888888876653221 112233333332 2
Q ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcC
Q psy597 413 PDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLG 492 (546)
Q Consensus 413 ~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~ 492 (546)
.|....+..++.+-+.|...+.|+.|..+..++. .|...
T Consensus 225 ~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~--------------------------------------- 263 (523)
T 4b4t_S 225 HDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTD--------------------------------------- 263 (523)
T ss_dssp SSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTT---------------------------------------
T ss_pred cCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCccc---------------------------------------
Confidence 4455677888889999999999999999888763 22110
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Q psy597 493 PDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 532 (546)
Q Consensus 493 ~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~~ 532 (546)
..+......++.+|.++.-+++|.+|..++..|+..+|..
T Consensus 264 ~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 264 VSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred CCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 0124456778899999999999999999999999876543
No 257
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=91.10 E-value=0.78 Score=46.52 Aligned_cols=64 Identities=17% Similarity=0.238 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 377 AKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 377 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
..++..||.+......+..|..+|.+|..+ .|.....++.||.+....|+.-+|+-+|-+++..
T Consensus 152 hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~--------~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~ 215 (497)
T 1ya0_A 152 QHCLVHLGDIARYRNQTSQAESYYRHAAQL--------VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV 215 (497)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHHHHh--------CCCCCchHHHHHHHHhcccccHHHHHHHHHHHhc
Confidence 346788999999999999999999999999 8999999999999999999999999999988753
No 258
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=91.10 E-value=4.3 Score=43.80 Aligned_cols=26 Identities=15% Similarity=0.096 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHH
Q psy597 294 TMLNILALVYRDQNKYKEAANLLNDA 319 (546)
Q Consensus 294 ~~~~~la~~~~~~g~~~~A~~~~~~a 319 (546)
..|..+|..+...|+++.|+.+|.++
T Consensus 682 ~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 682 MKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 45667777777777777777777665
No 259
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=91.04 E-value=8.2 Score=34.47 Aligned_cols=57 Identities=21% Similarity=0.128 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhh
Q psy597 393 YEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK-QGKYKEAEILYKQVLTRA 449 (546)
Q Consensus 393 ~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~-~g~~~eA~~~~~~al~~~ 449 (546)
.+.|...|+.|.++....++|.+|.......|.+..|+. .|+.++|..+.++++..+
T Consensus 146 ~e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd~A 203 (234)
T 2br9_A 146 AENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDA 203 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 367889999999999888889999888888888888776 799999999999888754
No 260
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=90.68 E-value=9.4 Score=34.53 Aligned_cols=57 Identities=21% Similarity=0.128 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhh
Q psy597 393 YEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK-QGKYKEAEILYKQVLTRA 449 (546)
Q Consensus 393 ~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~-~g~~~eA~~~~~~al~~~ 449 (546)
.+.|...|+.|.++....++|.+|.......|.+..|+. .++.++|..+.++++..+
T Consensus 172 ~e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd~A 229 (261)
T 3ubw_A 172 AENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDA 229 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 367889999999999888889999888888888888776 799999999998888753
No 261
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=90.65 E-value=8.4 Score=34.42 Aligned_cols=58 Identities=22% Similarity=0.149 Sum_probs=49.0
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHhh
Q psy597 473 AKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK-QGKYKEAEILYKQVLTRAH 530 (546)
Q Consensus 473 ~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~-~g~~~~A~~~~~~al~~~~ 530 (546)
.+.|...|+.|..+....+++.+|.......+.+..|+. .|++++|....++|+.-.-
T Consensus 146 ~e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd~Ai 204 (234)
T 2br9_A 146 AENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAI 204 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 356788899999999888899999888888888888776 7999999999888887553
No 262
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=90.59 E-value=2.9 Score=35.64 Aligned_cols=102 Identities=18% Similarity=0.166 Sum_probs=66.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Q psy597 344 LYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKN 423 (546)
Q Consensus 344 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~ 423 (546)
+....|+++.|.+..+.. +....|..||......|+++-|+.+|.++-+. .
T Consensus 14 LAL~lg~l~~A~e~a~~l-------------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~----------------~ 64 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL-------------NDSITWERLIQEALAQGNASLAEMIYQTQHSF----------------D 64 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH-------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH----------------H
T ss_pred HHHhcCCHHHHHHHHHHh-------------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH----------------H
Confidence 345789999998886543 12457899999999999999999999987443 2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHH
Q psy597 424 NLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRA 483 (546)
Q Consensus 424 ~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~A 483 (546)
.+..+|...|+.+.-...-+.+... ...+.....+...|+++++.+.|.+.
T Consensus 65 ~L~~Ly~~tg~~e~L~kla~iA~~~---------g~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 65 KLSFLYLVTGDVNKLSKMQNIAQTR---------EDFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHC---------ccHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 3445566667765544444443321 11222333466777777777766554
No 263
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=90.56 E-value=9.8 Score=34.53 Aligned_cols=57 Identities=23% Similarity=0.185 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhh
Q psy597 393 YEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK-QGKYKEAEILYKQVLTRA 449 (546)
Q Consensus 393 ~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~-~g~~~eA~~~~~~al~~~ 449 (546)
.+.|...|+.|.++....++|.+|.......|.+..|+. +++.++|..+.++++.-+
T Consensus 151 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~A 208 (260)
T 1o9d_A 151 AESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA 208 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 357889999999999888889999888888888888776 799999999998888653
No 264
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=90.44 E-value=5.1 Score=34.09 Aligned_cols=101 Identities=12% Similarity=0.082 Sum_probs=66.8
Q ss_pred HHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Q psy597 303 YRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNN 382 (546)
Q Consensus 303 ~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 382 (546)
....|+++.|.+..+.. + . ...|..+|......|+++-|+.+|.++-... .
T Consensus 15 AL~lg~l~~A~e~a~~l---------~-~---~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~----------------~ 65 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL---------N-D---SITWERLIQEALAQGNASLAEMIYQTQHSFD----------------K 65 (177)
T ss_dssp HHHTTCHHHHHHHHHHH---------C-C---HHHHHHHHHHHHHTTCHHHHHHHHHHTTCHH----------------H
T ss_pred HHhcCCHHHHHHHHHHh---------C-C---HHHHHHHHHHHHHcCChHHHHHHHHHhCCHH----------------H
Confidence 34678999888876543 1 1 4579999999999999999999999875442 3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy597 383 LALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQV 445 (546)
Q Consensus 383 la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~a 445 (546)
+..+|...|+.+.-....+.+... ++ ++....+++.+|++++++++|.+.
T Consensus 66 L~~Ly~~tg~~e~L~kla~iA~~~-------g~------~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 66 LSFLYLVTGDVNKLSKMQNIAQTR-------ED------FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHT-------TC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHC-------cc------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 444566667765544333333221 12 122335567888888888887654
No 265
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=90.31 E-value=9.9 Score=34.18 Aligned_cols=57 Identities=25% Similarity=0.229 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhh
Q psy597 393 YEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK-QGKYKEAEILYKQVLTRA 449 (546)
Q Consensus 393 ~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~-~g~~~eA~~~~~~al~~~ 449 (546)
.+.|...|+.|.++....++|.+|.......|.+..|+. +++.++|..+.++++..+
T Consensus 147 ~~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd~A 204 (248)
T 3uzd_A 147 VESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDA 204 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 367899999999999888889999888888888888776 799999999999888754
No 266
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=89.38 E-value=12 Score=33.88 Aligned_cols=56 Identities=16% Similarity=0.103 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhh
Q psy597 393 YEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK-QGKYKEAEILYKQVLTRA 449 (546)
Q Consensus 393 ~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~-~g~~~eA~~~~~~al~~~ 449 (546)
.+.|...|+.|.++. ..++|.+|.......|.+..|+. +|+.++|..+.++++..+
T Consensus 172 ~e~a~~aY~~A~~iA-~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~A 228 (260)
T 2npm_A 172 AEDALKAYKDATVVA-KDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFEMA 228 (260)
T ss_dssp HHHHHHHHHHHHHHH-TTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 367889999999999 77888899888888888888776 799999999999988754
No 267
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=89.26 E-value=6 Score=36.07 Aligned_cols=118 Identities=8% Similarity=0.028 Sum_probs=85.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCChhhH
Q psy597 386 LCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIW 465 (546)
Q Consensus 386 ~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~ 465 (546)
-....|++++|+......++. .|..+.....|..+++-.|+++.|..-++.+.++.++...
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~--------~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~----------- 66 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKA--------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP----------- 66 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH-----------
T ss_pred HHHhCCCHHHHHHHHHHHHHh--------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH-----------
Confidence 355789999999999999887 8999999999999999999999999999999887654311
Q ss_pred HHHhhchhhHHHHHHHHHHH---HHHHHcC-------CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Q psy597 466 QDRQKNKAKNREKYYQRALE---IYELKLG-------PDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 532 (546)
Q Consensus 466 ~~~~~~~~~~A~~~~~~Al~---~~~~~~~-------~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~~ 532 (546)
....|..++. .-.+.+. ...|........-+......|+.++|..+-.+|++..|..
T Consensus 67 ----------~a~~yr~lI~aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~ 133 (273)
T 1zbp_A 67 ----------GASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 133 (273)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred ----------HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence 1112333321 1112221 1133345555556667777899999999999999987654
No 268
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=88.23 E-value=14 Score=33.01 Aligned_cols=56 Identities=18% Similarity=0.195 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Q psy597 393 YEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK-QGKYKEAEILYKQVLTR 448 (546)
Q Consensus 393 ~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~-~g~~~eA~~~~~~al~~ 448 (546)
.+.|...|+.|.++....++|.+|.......|.+..|+. .++.++|..+.++++.-
T Consensus 149 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd~ 205 (236)
T 3iqu_A 149 IDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFDE 205 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 467899999999999888889999888888888888774 69999999998888764
No 269
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=88.21 E-value=13 Score=32.81 Aligned_cols=61 Identities=15% Similarity=0.022 Sum_probs=50.1
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhh
Q psy597 389 NQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYL-KQGKYKEAEILYKQVLTRA 449 (546)
Q Consensus 389 ~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~-~~g~~~eA~~~~~~al~~~ 449 (546)
..|+.+.|...|+.|.++..+.++|.+|.......|.+..|+ -+++.++|..+.++++...
T Consensus 137 ~~g~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~~ 198 (227)
T 2o8p_A 137 GLCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKIL 198 (227)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 356789999999999999988777778876667777776665 5789999999999998753
No 270
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=87.47 E-value=20 Score=33.97 Aligned_cols=190 Identities=14% Similarity=0.076 Sum_probs=113.7
Q ss_pred HHhhcH---HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Q psy597 304 RDQNKY---KEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQL 380 (546)
Q Consensus 304 ~~~g~~---~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 380 (546)
...|+| -+|-..++.....+-+. .......+.++.=+..+.+.|++..|.++..-.++.+.+..-+ ++ ....
T Consensus 23 I~~G~y~~~YEAHQ~~RTi~~Ry~~~--k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~--~~-~~~~ 97 (336)
T 3lpz_A 23 IAEGQPEEQYEAAQETRLVAARYSKQ--GNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQR--VD-GASR 97 (336)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCC--CC-HHHH
T ss_pred HhCCCCccccHHHHHHHHHHHHHHhh--cCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCC--CC-HHHH
Confidence 345666 66666666655554443 4455556666666777778888888888887777777665221 21 2445
Q ss_pred HHHHHHHHHcCCH-HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccC
Q psy597 381 NNLALLCQNQSKY-EEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDG 459 (546)
Q Consensus 381 ~~la~~~~~~g~~-~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~ 459 (546)
..+..++.....- ..=..+.++++....+. +......+..+..+|..|++.+++.+|..+|- +.
T Consensus 98 ~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~-g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--lg------------ 162 (336)
T 3lpz_A 98 GKLLGCLRLFQPGEPVRKRFVKEMIDWSKKF-GDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--LG------------ 162 (336)
T ss_dssp HHHHHHHTTSCTTCHHHHHHHHHHHHHHHHH-SSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--TS------------
T ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--hc------------
Confidence 5566666554432 23356778888877663 33334456778889999999999999998873 11
Q ss_pred CChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHh
Q psy597 460 DNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNN-LASCYLKQGKYKEAEILYKQVLTRA 529 (546)
Q Consensus 460 ~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~-La~~y~~~g~~~~A~~~~~~al~~~ 529 (546)
.-+.+ ..|-..+--|.... .+.....+.. ....|...++...|...+....+..
T Consensus 163 ------------~~~s~-~~~a~mL~ew~~~~---~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~l 217 (336)
T 3lpz_A 163 ------------TKESP-EVLARMEYEWYKQD---ESHTAPLYCARAVLPYLLVANVRAANTAYRIFTSAL 217 (336)
T ss_dssp ------------CTTHH-HHHHHHHHHHHHTS---CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ------------CCchH-HHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 00111 11112221222221 2333333333 3445778999999999888877655
No 271
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=86.66 E-value=1.5 Score=30.24 Aligned_cols=36 Identities=25% Similarity=0.487 Sum_probs=29.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHhhhhcHHHHH
Q psy597 87 TALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDELA 122 (546)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la 122 (546)
..|-..+..++.+...|+.+|..|..|+.||++.|.
T Consensus 26 ~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 26 EALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346677788888999999999999999999887764
No 272
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=85.68 E-value=20 Score=40.57 Aligned_cols=130 Identities=11% Similarity=0.046 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh---------------cCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy597 295 MLNILALVYRDQNKYKEAANLLNDALTIREKT---------------LGENHAAVAATLNNLAVLYGKRGKYKEAEPLCK 359 (546)
Q Consensus 295 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---------------~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 359 (546)
..+.+|.++...|++++|..+|.++-.-.... ...........|..+..++...|.++.++.+..
T Consensus 844 ~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~ 923 (1139)
T 4fhn_B 844 AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSL 923 (1139)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45889999999999999999998873211000 000111123567788889999999999999999
Q ss_pred HHHHHHHHhcCCCChH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHH
Q psy597 360 RALEIREKVLGKEHPD-VAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKE 437 (546)
Q Consensus 360 ~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~e 437 (546)
.|++.. +.+++. ....|.++-..+...|+|++|...+...-. ....-.++..|....+..|..+.
T Consensus 924 lAi~~~----~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd---------~~~r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 924 LADASK----ETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST---------TPLKKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHC----CSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH---------SSSCHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHhc----cCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC---------HHHHHHHHHHHHHHHHhCCChhh
Confidence 999763 223333 334678888889999999999877743321 12223444555555555555443
No 273
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.28 E-value=26 Score=34.11 Aligned_cols=130 Identities=7% Similarity=-0.047 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC---------CChHHHHHHHHH
Q psy597 313 ANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK---------EHPDVAKQLNNL 383 (546)
Q Consensus 313 ~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~~~l 383 (546)
+..|+..+.-+... -+.-..+. .+..+.....+.++|.+++.+......+..+. .......+...+
T Consensus 59 ~~ly~~fi~~f~~k--in~L~lv~---~~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i 133 (393)
T 4b4t_O 59 LRLYDNFVSKFYDK--INQLSVVK---YLLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEI 133 (393)
T ss_dssp HHHHHHHHHHHHHH--SCSHHHHH---TTHHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--cCHHHHHH---HHHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHH
Confidence 45556655555433 11222221 23445567789999999998775544332211 112345677788
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 384 ALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 447 (546)
Q Consensus 384 a~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~ 447 (546)
+..|...|+.++|..+++++-.......+.+.......+...+..|...+++..+....-..+.
T Consensus 134 ~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~ 197 (393)
T 4b4t_O 134 ARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLS 197 (393)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 9999999999999999999998887765555556777777788888889998887766555554
No 274
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=84.36 E-value=12 Score=33.06 Aligned_cols=180 Identities=11% Similarity=0.038 Sum_probs=102.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-CchhHHHhhHHHHHhhhhhhH-HHHHHHHHHHHhccCCCCChhHHHHHH
Q psy597 220 NLVIQYASQGRYEVAVPLCKQALEDLEKTS-GKYEAAETLEDCALRSRKESY-DIVKQAKVAQILGSGGHDHPDVATMLN 297 (546)
Q Consensus 220 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~a~~~~~~~l~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~ 297 (546)
.++....+.++|++...+.+++.+.+...+ .-..+-+.++..+....-... ..+........- ...... ..
T Consensus 11 ~~AKlaeqaeRyddM~~~mk~v~~~~~~~~~eLt~EERnLLSvAYKNvig~rR~swRiissiEqk---ek~~~~----~~ 83 (227)
T 2o8p_A 11 YRAQVFEWGGCFDKMFEALKSLIYLSEFENSEFDDEERHLLTLCIKHKISDYRTMTSQVLQEQTK---QLNNDE----LV 83 (227)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---SCSCHH----HH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHhhcccHHHHHHHHHHHHH---HcCCHH----HH
Confidence 678888899999999999999887321111 112222333333332111111 111111111100 111111 11
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHHHHHhcCCC
Q psy597 298 ILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYG-----KRGKYKEAEPLCKRALEIREKVLGKE 372 (546)
Q Consensus 298 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~-----~~g~~~~A~~~~~~al~~~~~~~~~~ 372 (546)
.+..-|... =-.+=...+...+.+..+.+-+........+-..|..|. ..|+.+.|...|+.|.++..+..++.
T Consensus 84 ~~i~~yr~k-ie~EL~~iC~dil~lld~~Lip~aEskVFY~KMKGDYyRYlAE~~~g~~e~a~~aY~~A~~iA~~~L~pt 162 (227)
T 2o8p_A 84 KICSEYVFS-LRKDIKAFLQSFEDCVDRLVEKSFFSKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFTLLCEHPDKI 162 (227)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred HHHHHHHHH-HHHHHHHHHhhHHHHHHHhccCcHHHHHHHHHHhhhHHHHHHHHccccHHHHHHHHHHHHHHHHhhCCCC
Confidence 122222211 123334566777777766554443222333334454443 35778999999999999998877777
Q ss_pred ChHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHH
Q psy597 373 HPDVAKQLNNLALLCQ-NQSKYEEVERYYQRALEIY 407 (546)
Q Consensus 373 ~~~~~~~~~~la~~~~-~~g~~~eA~~~~~~al~~~ 407 (546)
||-......|.+..|+ -.+++++|....++|+++.
T Consensus 163 hPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~~ 198 (227)
T 2o8p_A 163 EQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKIL 198 (227)
T ss_dssp GGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 8877777777777666 4899999999999998864
No 275
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=83.50 E-value=0.79 Score=24.08 Aligned_cols=24 Identities=38% Similarity=0.598 Sum_probs=17.1
Q ss_pred HHHHHHhhhhcHHHHHHHHHHHHH
Q psy597 107 VRRLVQENAWLRDELANTQQKLQS 130 (546)
Q Consensus 107 ~~~~~~~~~~l~~~la~~~~~l~~ 130 (546)
+|||.|.|..|.+|++.+.-.+..
T Consensus 2 irrlkqknarlkqeiaaleyeiaa 25 (28)
T 3ra3_B 2 IRRLKQKNARLKQEIAALEYEIAA 25 (28)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHH
Confidence 678888888888888776655543
No 276
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=82.68 E-value=24 Score=31.95 Aligned_cols=55 Identities=22% Similarity=0.242 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHH
Q psy597 310 KEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGK-RGKYKEAEPLCKRALEIR 365 (546)
Q Consensus 310 ~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~ 365 (546)
+.|...|++|.+++ ..+.+.+|.......+.+..|+. +++.++|..+.++|+.-.
T Consensus 173 e~a~~aY~~A~~iA-~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~A 228 (260)
T 2npm_A 173 EDALKAYKDATVVA-KDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFEMA 228 (260)
T ss_dssp HHHHHHHHHHHHHH-TTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 57889999999999 77889999888888888887776 799999999999988765
No 277
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=81.87 E-value=10 Score=30.83 Aligned_cols=63 Identities=19% Similarity=0.226 Sum_probs=52.8
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q psy597 83 AQVMTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSSEQANSQLEEEKKHL 145 (546)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~~~~~qlee~~~~l 145 (546)
.+.+..|-..+..++.....|...++.-...++-++||+..++-.+...+..+..++++.+.|
T Consensus 67 ~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~L 129 (152)
T 3a7p_A 67 LNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQL 129 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777777777777778899999999999999999999999999987653
No 278
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=81.69 E-value=4.2 Score=26.37 Aligned_cols=35 Identities=23% Similarity=0.317 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHh
Q psy597 101 QKLRTQVRRLVQENAWLRDELANTQQKLQSSEQAN 135 (546)
Q Consensus 101 ~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~~~~ 135 (546)
=+|++||..|++||.|+..-|..-|..-...|.-+
T Consensus 13 YaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~v 47 (56)
T 2w6b_A 13 YALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLV 47 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999888777665555444444433
No 279
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=81.67 E-value=30 Score=31.31 Aligned_cols=57 Identities=23% Similarity=0.202 Sum_probs=48.0
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHh
Q psy597 473 AKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK-QGKYKEAEILYKQVLTRA 529 (546)
Q Consensus 473 ~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~-~g~~~~A~~~~~~al~~~ 529 (546)
.+.+...|+.|..+....+++.+|.......+.+..|+. .+++++|..+.++|+.-.
T Consensus 151 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~A 208 (260)
T 1o9d_A 151 AESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA 208 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 346788899999999888899999988888888888776 699999999888887654
No 280
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=81.58 E-value=8.4 Score=28.04 Aligned_cols=52 Identities=8% Similarity=0.029 Sum_probs=42.4
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHhh
Q psy597 85 VMTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSSEQANS 136 (546)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~~~~~ 136 (546)
.+.+...-+..+..+.+.|+.+|++|...++-+..++..++++....|..+.
T Consensus 14 ~~~~~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD 65 (83)
T 2xdj_A 14 ISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQID 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556677788888999999999999999999999999888888887765
No 281
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=81.35 E-value=4.8 Score=28.30 Aligned_cols=51 Identities=29% Similarity=0.343 Sum_probs=37.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy597 94 QNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSSEQANSQLEEEKKH 144 (546)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~~~~~qlee~~~~ 144 (546)
+++..-|..|=+.|..|.-++.-|+.|+...++...+.+..+..++++.+.
T Consensus 26 NaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElkr 76 (77)
T 2w83_C 26 NALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELRK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455666778888999999999999999999999999999999999988653
No 282
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.19 E-value=27 Score=33.99 Aligned_cols=107 Identities=9% Similarity=0.018 Sum_probs=76.9
Q ss_pred HHHHHhhcHHHHHHHHHHHHHHHHHhcCC---------CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q psy597 301 LVYRDQNKYKEAANLLNDALTIREKTLGE---------NHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 371 (546)
Q Consensus 301 ~~~~~~g~~~~A~~~~~~al~~~~~~~g~---------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 371 (546)
.+.....+..+|.+++.+.........+. .......+...++..|...|+.++|..+++++-.......+.
T Consensus 84 ~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~ 163 (393)
T 4b4t_O 84 ASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSI 163 (393)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCc
Confidence 44556678899999988775443322111 112345667788999999999999999999998887776555
Q ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy597 372 EHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIY 407 (546)
Q Consensus 372 ~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 407 (546)
+....+..+...+..|...+++..+...+-..+..+
T Consensus 164 ~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~ 199 (393)
T 4b4t_O 164 PLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTL 199 (393)
T ss_dssp SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Confidence 545667777778888889999988777766666543
No 283
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=80.31 E-value=4.3 Score=29.68 Aligned_cols=44 Identities=16% Similarity=0.288 Sum_probs=36.5
Q ss_pred cCHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhcHHHHHH
Q psy597 80 LNEAQVMTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDELAN 123 (546)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~ 123 (546)
++-+.++..-..|+..++.+.+.|+.++..|.++|..|+..|..
T Consensus 36 ~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 36 ASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55567777778888999999999999999999999888777754
No 284
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=79.28 E-value=12 Score=29.42 Aligned_cols=51 Identities=24% Similarity=0.430 Sum_probs=38.0
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHH
Q psy597 84 QVMTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSSEQA 134 (546)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~~~ 134 (546)
.++..|=+++..+++|...-+.+.....-+|..||.+++.+.........+
T Consensus 40 ~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~~~~~~~~~ 90 (120)
T 3i00_A 40 RVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRRQREDTEKA 90 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 377788888999999998888888888889999999998774444444333
No 285
>1vf6_A PALS-1, PALS1-associated tight junction protein; L27 domain, heterodimer, four-helical bundle, coiled-coil, hydrophobic packing interactions; 2.10A {Homo sapiens} SCOP: a.194.1.1
Probab=78.99 E-value=8.5 Score=27.43 Aligned_cols=62 Identities=24% Similarity=0.356 Sum_probs=43.9
Q ss_pred hHHHHHHHHhHhhhHHHHHhhhhhccCCCchHHHHHHHHhhHHHHHcCcCHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q psy597 32 KTVQQGLEALKNEHTSILNSLSETQHGGPVEEEKRNMVKNSLEIIELGLNEAQVMTALAGHLQNVEAEKQKLRTQVRRLV 111 (546)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (546)
-+|.|.||.|+.- |.+. +.--.+||..+++.-|.-- |.+|+-+++.-.+.|+.||...-
T Consensus 3 ~rvLq~leRLQ~K-------L~er--Gd~s~~ekLs~lk~~LqSP------------LF~qILtlQqSikqLk~Qvn~~p 61 (83)
T 1vf6_A 3 LQVLQVLDRLKMK-------LQEK--GDTSQNEKLSMFYETLKSP------------LFNQILTLQQSIKQLKGQLNHIL 61 (83)
T ss_dssp --CHHHHHHHHHH-------HHHH--TCCTTHHHHHHHHHHHHCH------------HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHH-------HHHc--cccchHhHHHHHHHHHhCH------------HHHHHHHHHHHHHHHHHhhccCC
Confidence 4577777777654 2221 2334489999998776655 89999999999999999999876
Q ss_pred Hhh
Q psy597 112 QEN 114 (546)
Q Consensus 112 ~~~ 114 (546)
-++
T Consensus 62 ~~~ 64 (83)
T 1vf6_A 62 ESG 64 (83)
T ss_dssp C--
T ss_pred ccc
Confidence 555
No 286
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=78.92 E-value=4.5 Score=29.92 Aligned_cols=45 Identities=20% Similarity=0.260 Sum_probs=37.0
Q ss_pred cCHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhcHHHHHHH
Q psy597 80 LNEAQVMTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDELANT 124 (546)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~ 124 (546)
.+-+.++..-..|+..++.+.+++..++..|.++|..|+.+|..+
T Consensus 41 ~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 41 APKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344566777778889999999999999999999998888887654
No 287
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=77.63 E-value=5.2 Score=27.20 Aligned_cols=36 Identities=22% Similarity=0.305 Sum_probs=23.8
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhcHHHH
Q psy597 86 MTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDEL 121 (546)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 121 (546)
+..|-.-+..++.+...|+.+|..|..++.||+..|
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555566667777777777777777777776544
No 288
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=77.59 E-value=4.2 Score=28.53 Aligned_cols=38 Identities=24% Similarity=0.352 Sum_probs=23.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHH
Q psy597 91 GHLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKL 128 (546)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~l 128 (546)
.|+..+|.++..|+.....+..+|.-|+.++..++..+
T Consensus 29 ~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 29 DHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666666666655544
No 289
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=77.24 E-value=2.8 Score=47.52 Aligned_cols=120 Identities=12% Similarity=0.027 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHH
Q psy597 216 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATM 295 (546)
Q Consensus 216 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 295 (546)
...+.+|.++...|++++|..+|.++-................. .+.............
T Consensus 843 ~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~---------------------~~~~~~~~~~~l~~Y 901 (1139)
T 4fhn_B 843 IAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQ---------------------EIAEKYHHQNLLSCY 901 (1139)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHH---------------------HHHHTTTSCCSSHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccc---------------------cccccccccccHHHH
Confidence 34588999999999999999999887432111100000000000 000001122233455
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy597 296 LNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAA-VAATLNNLAVLYGKRGKYKEAEPLCKR 360 (546)
Q Consensus 296 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~ 360 (546)
|..+..++...+.++.++.....|+... +.+++. ....|.++-..+...|+|++|...+..
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~----~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~ 963 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASK----ETDDEDLSIAITHETLKTACAAGKFDAAHVALMV 963 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHC----CSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhc----cCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 7777788888999999999999998763 233343 344678888899999999999877643
No 290
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=77.11 E-value=41 Score=30.17 Aligned_cols=57 Identities=25% Similarity=0.233 Sum_probs=48.4
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHh
Q psy597 473 AKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK-QGKYKEAEILYKQVLTRA 529 (546)
Q Consensus 473 ~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~-~g~~~~A~~~~~~al~~~ 529 (546)
.+.+...|+.|..+....+++.+|.......+.+..|+. .+++++|....++|+.-+
T Consensus 147 ~~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd~A 204 (248)
T 3uzd_A 147 VESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDA 204 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 356788899999999888999999988888888887776 799999999988887754
No 291
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=76.64 E-value=43 Score=30.22 Aligned_cols=57 Identities=23% Similarity=0.164 Sum_probs=48.6
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHh
Q psy597 473 AKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK-QGKYKEAEILYKQVLTRA 529 (546)
Q Consensus 473 ~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~-~g~~~~A~~~~~~al~~~ 529 (546)
.+.+...|+.|..+....+++.+|.......+.+..|+. .+++++|....++|++-+
T Consensus 172 ~e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd~A 229 (261)
T 3ubw_A 172 AENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDA 229 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 356788899999999888999999988888888888776 699999999988888754
No 292
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=76.38 E-value=35 Score=37.32 Aligned_cols=127 Identities=15% Similarity=0.081 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q psy597 295 MLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAA-VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEH 373 (546)
Q Consensus 295 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 373 (546)
+...||.+|...++ +++.+.+...+.. ++.. ...+-..+|.++...|+-+....++..+.+. .
T Consensus 457 AaLGLGla~~GS~~-eev~e~L~~~L~d-------d~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~-------~- 520 (963)
T 4ady_A 457 ASLGIGLAAMGSAN-IEVYEALKEVLYN-------DSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET-------Q- 520 (963)
T ss_dssp HHHHHHHHSTTCCC-HHHHHHHHHHHHT-------CCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC-------S-
T ss_pred HHHHHHHHhcCCCC-HHHHHHHHHHHhc-------CCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc-------C-
Confidence 44456666655554 3444555444431 1221 1245556677777777766555555544421 1
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHH-HHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy597 374 PDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNV-AKTKNNLASCYLKQGKYKEAEILYKQ 444 (546)
Q Consensus 374 ~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~-~~~~~~La~~y~~~g~~~eA~~~~~~ 444 (546)
.+...-...+|..+...|+.+.+....+..... .+|.. ..+-..+|..|...|+...-..++..
T Consensus 521 ~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~-------~dp~vRygaa~alglAyaGTGn~~aIq~LL~~ 585 (963)
T 4ady_A 521 HGNITRGLAVGLALINYGRQELADDLITKMLAS-------DESLLRYGGAFTIALAYAGTGNNSAVKRLLHV 585 (963)
T ss_dssp CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC-------SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC-------CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 122222234444444556665555554443322 12222 22234456666666664333334433
No 293
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=75.63 E-value=43 Score=31.73 Aligned_cols=54 Identities=20% Similarity=0.158 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy597 354 AEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELK 410 (546)
Q Consensus 354 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~ 410 (546)
++.+|.+|+...+..+++.| ..-|..+|-.+++.+++.+|+.++-.|-...+..
T Consensus 276 ~l~L~~~AI~sa~~yY~n~H---vYPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~Y 329 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHH---IYPYTYLGGYYYRKKKYYEAIASWVDAGYVAGKY 329 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHhccCC---ccchhhhhhhhhhcchHHHHHHHHHHHHHHHHHc
Confidence 88999999999988887765 4456778899999999999999999988876544
No 294
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=74.67 E-value=41 Score=30.51 Aligned_cols=74 Identities=22% Similarity=0.198 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHHHHHhhc----------HHHHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHH-HcCCHHHHHHH
Q psy597 291 DVATMLNILALVYRDQNK----------YKEAANLLNDALTIREKTL--GENHAAVAATLNNLAVLYG-KRGKYKEAEPL 357 (546)
Q Consensus 291 ~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~--g~~~~~~~~~~~~la~~~~-~~g~~~~A~~~ 357 (546)
..+..+-..|..|+..-. -+.|...|++|.++....+ .+.+|.......+.+..|+ -+++.++|..+
T Consensus 140 skVFY~KMKGDYyRYlAE~~~g~erk~~~e~a~~aYq~A~eiA~~~L~~~pThPiRLGLaLNfSVFyYEIln~p~~Ac~l 219 (268)
T 3efz_A 140 ARAFCIKLKGDLMRYKAEILKDEEKNQCIKQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKF 219 (268)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred hHHHHHhccchHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 334444455777765422 4678899999999998877 7889988888888888777 47999999999
Q ss_pred HHHHHHH
Q psy597 358 CKRALEI 364 (546)
Q Consensus 358 ~~~al~~ 364 (546)
.++|++-
T Consensus 220 Ak~AFde 226 (268)
T 3efz_A 220 ANRAIQA 226 (268)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 9999876
No 295
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=74.63 E-value=26 Score=34.69 Aligned_cols=102 Identities=10% Similarity=0.099 Sum_probs=63.3
Q ss_pred HHhhhhhHHHHHHHHhHhhhHHHHHhhhhhccCCCchHHHHHHHHhhHHHHHcCcCHHHHHHHHHhhhhhHHHHHHHHHH
Q psy597 26 EIMTNTKTVQQGLEALKNEHTSILNSLSETQHGGPVEEEKRNMVKNSLEIIELGLNEAQVMTALAGHLQNVEAEKQKLRT 105 (546)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (546)
-|...=+.|-..++-||++...+-.+-..+ ..+...+.++|++.+.... +.......+-..|+..++-|+.
T Consensus 54 lLdkqErDltkrINELKnqLEdlsKnsKds---eqy~k~~~E~Lr~rq~q~~------dNdNtynE~S~ELRRrIqyLKe 124 (562)
T 3ghg_A 54 LIDEVNQDFTNRINKLKNSLFEYQKNNKDS---HSLTTNIMEILRGDFSSAN------NRDNTYNRVSEDLRSRIEVLKR 124 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHH---HHHHHHHHHTTSSHHHHHH------HHHHHHHHTTHHHHHHHHHHHH
T ss_pred hHHhhcCcHHHHHHHHHHHHHHHHhhchhH---HHHHHHHHHHHHHHHHhhh------ccchhHHHHHHHHHHHHHHHHH
Confidence 445555677777888888777763332222 2344566666666665553 1222233333467777777776
Q ss_pred HHHHHHHhhhhcHHHHHHHHHHHHHHHHHhh
Q psy597 106 QVRRLVQENAWLRDELANTQQKLQSSEQANS 136 (546)
Q Consensus 106 ~~~~~~~~~~~l~~~la~~~~~l~~~~~~~~ 136 (546)
.|..-.+..+=|+..|++...+++++|..+.
T Consensus 125 kVdnQlsnIrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 125 KVIEKVQHIQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666667777888888888888887764
No 296
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=74.13 E-value=48 Score=29.50 Aligned_cols=57 Identities=19% Similarity=0.194 Sum_probs=47.8
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHh
Q psy597 473 AKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK-QGKYKEAEILYKQVLTRA 529 (546)
Q Consensus 473 ~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~-~g~~~~A~~~~~~al~~~ 529 (546)
.+.+...|+.|..+....+++.+|.......+.+..|+. .+++++|....++|++-.
T Consensus 149 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd~A 206 (236)
T 3iqu_A 149 IDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFDEA 206 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 456788899999999888999999988888888888775 699999999888887644
No 297
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=73.77 E-value=5 Score=27.41 Aligned_cols=37 Identities=16% Similarity=0.312 Sum_probs=26.7
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhcHHHH
Q psy597 85 VMTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDEL 121 (546)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 121 (546)
-+..|-.-+..++.+...|+.+|..|..++.+|+..|
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777788888888888888888888887665
No 298
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=73.28 E-value=34 Score=31.12 Aligned_cols=55 Identities=15% Similarity=0.182 Sum_probs=47.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 344 LYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406 (546)
Q Consensus 344 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 406 (546)
...+.|++++|+......++. .|..+.....+..+++-.|+++.|..-++-+.++
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~--------~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKA--------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHh--------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 356779999999999998877 4888999999999999999999999988877665
No 299
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=73.17 E-value=45 Score=28.82 Aligned_cols=72 Identities=13% Similarity=0.123 Sum_probs=55.1
Q ss_pred CCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 286 GHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 364 (546)
Q Consensus 286 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 364 (546)
-.+++....+|...+..+ ..+...++..+|.-.... +-....+..|...|..+...|++.+|..+|+.+++.
T Consensus 73 YkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~------~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~ 144 (202)
T 3esl_A 73 YRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNK------GIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN 144 (202)
T ss_dssp GTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHH------TSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHC------CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 346788888888877765 234456777788776554 334455778899999999999999999999999986
No 300
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=72.58 E-value=18 Score=37.75 Aligned_cols=131 Identities=10% Similarity=0.088 Sum_probs=82.6
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChH
Q psy597 296 LNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPD 375 (546)
Q Consensus 296 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 375 (546)
....+.......+.+.|...+....... . -+..........+|.-....+...++...+.++... ..+..
T Consensus 217 ~~~~~~~rlar~d~~~A~~~~~~~~~~~--~--~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 286 (618)
T 1qsa_A 217 MAAVAFASVARQDAENARLMIPSLAQAQ--Q--LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR------SQSTS 286 (618)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHT--T--CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT------CCCHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHhhhhcc--C--CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc------CCChH
Confidence 3444555566678888988887765421 1 223333445555665566666456667777664432 22222
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 376 VAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 447 (546)
Q Consensus 376 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~ 447 (546)
. .-...+. ....|+++.|..+|.+.-. .........+.+|..+...|+.++|..+|.++..
T Consensus 287 ~--~e~~~r~-Alr~~d~~~a~~~~~~l~~--------~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 287 L--IERRVRM-ALGTGDRRGLNTWLARLPM--------EAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp H--HHHHHHH-HHHHTCHHHHHHHHHHSCT--------TGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred H--HHHHHHH-HHHCCCHHHHHHHHHHccc--------cccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 2 2223333 3456999999998865432 1334577789999999999999999999998765
No 301
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=72.50 E-value=18 Score=26.13 Aligned_cols=39 Identities=23% Similarity=0.386 Sum_probs=29.3
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhcHHHHH
Q psy597 84 QVMTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDELA 122 (546)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la 122 (546)
.++..-..|+..++.+.+++..+.+.|..+|..|+..|.
T Consensus 40 ~iL~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 40 SLLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555677788888888888888888888877776664
No 302
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=71.78 E-value=79 Score=34.57 Aligned_cols=139 Identities=13% Similarity=0.111 Sum_probs=81.7
Q ss_pred hhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGE--NHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367 (546)
Q Consensus 290 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 367 (546)
....-+++.+|.++...++ ++..++...+.......|. .......+...||.+|...++- ++.+.+...+..
T Consensus 410 ~ik~GAllaLGli~ag~~~--~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~e-ev~e~L~~~L~d--- 483 (963)
T 4ady_A 410 FIKGGSLYGLGLIYAGFGR--DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANI-EVYEALKEVLYN--- 483 (963)
T ss_dssp HHHHHHHHHHHHHTTTTTH--HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCH-HHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHhcCCCcH--HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHhc---
Confidence 3467778888888877764 5777777766542100000 0223345666888888877763 455555555542
Q ss_pred hcCCCChH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy597 368 VLGKEHPD-VAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 446 (546)
Q Consensus 368 ~~~~~~~~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al 446 (546)
+++. ...+-..+|.++...|+-+.....+..+.+- ......-...+|..+...|+.+.+....+...
T Consensus 484 ----d~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~--------~~e~vrR~aalgLGll~~g~~e~~~~li~~L~ 551 (963)
T 4ady_A 484 ----DSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET--------QHGNITRGLAVGLALINYGRQELADDLITKML 551 (963)
T ss_dssp ----CCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC--------SCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHH
T ss_pred ----CCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc--------CcHHHHHHHHHHHHhhhCCChHHHHHHHHHHH
Confidence 1222 2245667888888889877666666555432 22233333445555566788776666655544
No 303
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=70.31 E-value=62 Score=31.30 Aligned_cols=54 Identities=11% Similarity=0.053 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy597 354 AEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELK 410 (546)
Q Consensus 354 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~ 410 (546)
++.+|.+++...+..+++.| ..-|..+|-.+++.+++.+|+.++-.|-...+..
T Consensus 298 ~~~L~~~AI~sa~~~Y~n~H---vYPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~~Y 351 (550)
T 3u84_A 298 PLTLYHKGIASAKTYYRDEH---IYPYMYLAGYHCRNRNVREALQAWADTATVIQDY 351 (550)
T ss_dssp HHHHHHHHHHHHHHHSTTCC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHhccCC---ccceeecchhhhhcchHHHHHHHHHHHHHHHHHc
Confidence 88899999999988877665 4457778999999999999999999988876544
No 304
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=68.67 E-value=68 Score=29.03 Aligned_cols=95 Identities=15% Similarity=0.020 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHHHHc-----C-----CHHHHHHHHHHHHHHHHHhc--CCCChHHH
Q psy597 354 AEPLCKRALEIREKVLGKE--HPDVAKQLNNLALLCQNQ-----S-----KYEEVERYYQRALEIYELKL--GPDDSNVA 419 (546)
Q Consensus 354 A~~~~~~al~~~~~~~~~~--~~~~~~~~~~la~~~~~~-----g-----~~~eA~~~~~~al~~~~~~~--~~~~~~~~ 419 (546)
=...|..++.+..+.+-+. .+.....+-..|..|... | -.+.|...|+.|.++....+ +|.+|...
T Consensus 117 L~~iC~diL~llD~~Lip~a~~~skVFY~KMKGDYyRYlAE~~~g~erk~~~e~a~~aYq~A~eiA~~~L~~~pThPiRL 196 (268)
T 3efz_A 117 ILLESEDVIRIIDDNLLMYSEEGARAFCIKLKGDLMRYKAEILKDEEKNQCIKQAVEFYEDALQRERSFLEKYPSDPLYL 196 (268)
T ss_dssp HHHHHHHHHHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHCTTGGGCHHHH
T ss_pred HHHHHHHHHHHHHHhhcccCCchhHHHHHhccchHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHH
Confidence 3455666666655543221 121222222336555432 1 14678899999999998878 88899888
Q ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHHh
Q psy597 420 KTKNNLASCYL-KQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 420 ~~~~~La~~y~-~~g~~~eA~~~~~~al~~ 448 (546)
....|.+..|+ -+++.++|..+.++++.-
T Consensus 197 GLaLNfSVFyYEIln~p~~Ac~lAk~AFde 226 (268)
T 3efz_A 197 ATILNYTILKYDLLGNPEGAMKFANRAIQA 226 (268)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 88888888877 479999999999999875
No 305
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=68.65 E-value=5.2 Score=21.53 Aligned_cols=24 Identities=33% Similarity=0.567 Sum_probs=18.4
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHH
Q psy597 88 ALAGHLQNVEAEKQKLRTQVRRLV 111 (546)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~ 111 (546)
.|-..|.++|+|..+|.+.|..|-
T Consensus 3 qlnallasleaenkqlkakveell 26 (31)
T 1p9i_A 3 QLNALLASLEAENKQLKAKVEELL 26 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567788999999998888764
No 306
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=68.27 E-value=14 Score=21.56 Aligned_cols=31 Identities=23% Similarity=0.313 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhhhhcHHHHHHHHHHHHHHH
Q psy597 102 KLRTQVRRLVQENAWLRDELANTQQKLQSSE 132 (546)
Q Consensus 102 ~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~ 132 (546)
+|.+.|..|-.+|..|-+|++-++..++.++
T Consensus 5 QLE~kVEeLl~~~~~Le~EV~RL~~ll~~~e 35 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENEVARLEKENAECE 35 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcccc
Confidence 4566666666677666666666666665554
No 307
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=68.16 E-value=76 Score=30.08 Aligned_cols=96 Identities=14% Similarity=0.114 Sum_probs=65.3
Q ss_pred hHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcC
Q psy597 416 SNVAKTKNNLASCYLKQG---KYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLG 492 (546)
Q Consensus 416 ~~~~~~~~~La~~y~~~g---~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~ 492 (546)
.........|-++++..| +|.-|+-.+-..-++.|..+.. .++..|.+|+...+..++
T Consensus 232 ~El~~LQq~LLWLLyD~GhL~rYPmALgnLgDLEe~~pt~gr~-------------------~~l~L~~~AI~sa~~yY~ 292 (472)
T 3re2_A 232 IQLSQLQQELLWLLYDMGHIKTYPMAIANLGDLEEISPTPGRP-------------------PAEELFKEAITVAKREYS 292 (472)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHSCCTTSC-------------------CHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHhccchhhCchhhcchhhHHhcCCCCCCC-------------------CHHHHHHHHHHHHHHHhc
Confidence 344555556666666665 5677777777776665543221 256778888888777776
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhc
Q psy597 493 PDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHERE 533 (546)
Q Consensus 493 ~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~~~ 533 (546)
..+ ..-|..+|-.|++.+++.+|+.++-.|-.....-.
T Consensus 293 n~H---vYPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~YN 330 (472)
T 3re2_A 293 DHH---IYPYTYLGGYYYRKKKYYEAIASWVDAGYVAGKYN 330 (472)
T ss_dssp TCC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSC
T ss_pred cCC---ccchhhhhhhhhhcchHHHHHHHHHHHHHHHHHcC
Confidence 544 34456688899999999999999988877665433
No 308
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=67.57 E-value=7.5 Score=28.56 Aligned_cols=39 Identities=21% Similarity=0.321 Sum_probs=26.4
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHH
Q psy597 88 ALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQ 126 (546)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~ 126 (546)
.+..-+..++.|...|+.+|..|..|..+|+.-|..+..
T Consensus 40 e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~ 78 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPE 78 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcH
Confidence 345566677788888888888888888777776655433
No 309
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=67.37 E-value=21 Score=22.64 Aligned_cols=47 Identities=30% Similarity=0.389 Sum_probs=32.4
Q ss_pred hhHHHHHHHHhHhhhHHHHHhhhhhccCCCchHHHHHHHHhhHHHHHcCcCHHHHHHHHHhhhh
Q psy597 31 TKTVQQGLEALKNEHTSILNSLSETQHGGPVEEEKRNMVKNSLEIIELGLNEAQVMTALAGHLQ 94 (546)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (546)
-.+..+..|+||.|.+.+-..|..+. .-|.++|. |+.-|..+..|++
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS--------------~~lskLE~---ets~mKevlk~lq 51 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNS--------------NHLTKLET---EASNMKEVLKQLQ 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhH--------------HHHHHHHh---hhhhHHHHHHHHc
Confidence 35677888999999988888887753 33444543 5666666666665
No 310
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=67.08 E-value=70 Score=28.53 Aligned_cols=109 Identities=18% Similarity=0.271 Sum_probs=47.3
Q ss_pred hHHhhhhhHHHHHHHHhHhhhHHHHHhhhhhccCCCchHHHHHHHHhhHHHHHcCcCHHH-HHHHHHhhhhhHHHHHHHH
Q psy597 25 EEIMTNTKTVQQGLEALKNEHTSILNSLSETQHGGPVEEEKRNMVKNSLEIIELGLNEAQ-VMTALAGHLQNVEAEKQKL 103 (546)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 103 (546)
+.+......+...++.++.+...+-..+... ..+...+...++.+..-+.+.+ -+..+...+..++.+...+
T Consensus 16 ~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (284)
T 1c1g_A 16 ENALDRADEAEADKKAAEDRSKQLEDELVSL-------QKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASL 88 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555544444443332 2333333333333332222211 1223344444444444555
Q ss_pred HHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHhhhHHH
Q psy597 104 RTQVRRLVQENAWLRDELANTQQKLQSSEQANSQLEE 140 (546)
Q Consensus 104 ~~~~~~~~~~~~~l~~~la~~~~~l~~~~~~~~qlee 140 (546)
...+..+..+..-+..++..+...+......+..++.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 125 (284)
T 1c1g_A 89 NRRIQLFEEELDRAQERLATALQKLEEAEKAADESER 125 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555554444444444444444444444444433
No 311
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=67.00 E-value=69 Score=30.99 Aligned_cols=97 Identities=13% Similarity=0.112 Sum_probs=65.9
Q ss_pred CChhHHHHHHHHHHHHHHhh---cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQN---KYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 364 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 364 (546)
+.......-..|=++++..| +|.-|+-.+-+.-++.+.. ....++.+|.+|+..
T Consensus 237 Ds~el~~lQq~LLWlLyd~Ghl~~YPmALgnLgDLEei~pt~-----------------------grp~~~~Lf~~AI~~ 293 (489)
T 4gq4_A 237 DSLELLQLQQKLLWLLYDLGHLERYPMALGNLADLEELEPTP-----------------------GRPDPLTLYHKGIAS 293 (489)
T ss_dssp ECHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHSCCT-----------------------TSCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhccchhhcchhhhcccCHhhcCCCC-----------------------CCCCHHHHHHHHHHH
Confidence 34445555555566666655 4455555555444432111 112456899999999
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy597 365 REKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELK 410 (546)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~ 410 (546)
.+..+.+.| ...|..+|-.+++.+++.+|+.++..+-......
T Consensus 294 ar~~Y~~~h---vYPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~Y 336 (489)
T 4gq4_A 294 AKTYYRDEH---IYPYMYLAGYHCRNRNVREALQAWADTATVIQDY 336 (489)
T ss_dssp HHHHSTTCC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS
T ss_pred HHHhcccCc---ccceeecchHHHHhhhHHHHHHHhhhhhhhhhhc
Confidence 998887766 5567788999999999999999999998876544
No 312
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=66.01 E-value=25 Score=35.18 Aligned_cols=53 Identities=11% Similarity=0.171 Sum_probs=36.5
Q ss_pred hHHhhhhhHHHHHHHHhHhhhHHHHHhhhhhccC---CCchHHHHHHHHhhHHHHH
Q psy597 25 EEIMTNTKTVQQGLEALKNEHTSILNSLSETQHG---GPVEEEKRNMVKNSLEIIE 77 (546)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 77 (546)
..++.+..++.++|+.+..+-+.+|..+.....+ ..+.+.|..-+++++-.++
T Consensus 362 ~~vl~G~~t~eeal~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 417 (471)
T 3mq9_A 362 INAASGRQTVDEALKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVE 417 (471)
T ss_dssp HHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHH
Confidence 4567777888999999999999999887665433 2333555555555555554
No 313
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=65.39 E-value=50 Score=29.07 Aligned_cols=67 Identities=10% Similarity=0.100 Sum_probs=48.7
Q ss_pred CCCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 286 GHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 364 (546)
Q Consensus 286 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 364 (546)
..+++....+|...+.. . +.+..+|.-.... +-....+..|...|..+...|++.+|..+|+.+++.
T Consensus 113 YknD~RyLklWl~Ya~~---~---~~p~~if~~L~~~------~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 179 (223)
T 4aez_C 113 YKDDVRYLRIWMQYVNY---I---DEPVELFSFLAHH------HIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRM 179 (223)
T ss_dssp GTTCHHHHHHHHHHHTT---C---SCHHHHHHHHHHT------TCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHc---c---CCHHHHHHHHHHC------CcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 34677777777777763 1 3455566555432 223445778889999999999999999999999986
No 314
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=65.25 E-value=95 Score=30.04 Aligned_cols=96 Identities=10% Similarity=0.035 Sum_probs=64.8
Q ss_pred hHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcC
Q psy597 416 SNVAKTKNNLASCYLKQG---KYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLG 492 (546)
Q Consensus 416 ~~~~~~~~~La~~y~~~g---~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~ 492 (546)
.........|-++++..| +|.-|+-.+-..-++.|..+.. .++..|.+|+...+..+.
T Consensus 254 ~el~~LQq~LLWlLyd~GhL~rYPmALgnLgDLEe~~pt~gr~-------------------~~~~L~~~AI~sa~~~Y~ 314 (550)
T 3u84_A 254 LELLQLQQKLLWLLYDLGHLERYPMALGNLADLEELEPTPGRP-------------------DPLTLYHKGIASAKTYYR 314 (550)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHSCCTTCC-------------------CHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHhccchhhCchhhcchhhHhhcCCCCCCC-------------------CHHHHHHHHHHHHHHHhc
Confidence 344455556666666665 5677777777776665543221 256778888888777776
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhc
Q psy597 493 PDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHERE 533 (546)
Q Consensus 493 ~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~~~ 533 (546)
..+ ..-|..+|-.|++.+++.+|+.++-.|-.....-.
T Consensus 315 n~H---vYPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~~YN 352 (550)
T 3u84_A 315 DEH---IYPYMYLAGYHCRNRNVREALQAWADTATVIQDYN 352 (550)
T ss_dssp TCC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSC
T ss_pred cCC---ccceeecchhhhhcchHHHHHHHHHHHHHHHHHcC
Confidence 544 34456688899999999999999888877665433
No 315
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=64.95 E-value=7.7 Score=25.48 Aligned_cols=18 Identities=22% Similarity=0.420 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy597 97 EAEKQKLRTQVRRLVQEN 114 (546)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~ 114 (546)
..|.+.|+..+..|..++
T Consensus 25 k~E~~eLk~k~~~L~~~~ 42 (53)
T 2yy0_A 25 RLELAEMKEKYEAIVEEN 42 (53)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333334444443333333
No 316
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=64.25 E-value=1.1e+02 Score=30.53 Aligned_cols=102 Identities=14% Similarity=0.163 Sum_probs=57.4
Q ss_pred hHHHHHHHHhHhhhHHHHHhhhhhccCC-----CchHHHHHHHHhhHHHHHcCcCHHHHHHHHHhhhhhHHHHHHHHHHH
Q psy597 32 KTVQQGLEALKNEHTSILNSLSETQHGG-----PVEEEKRNMVKNSLEIIELGLNEAQVMTALAGHLQNVEAEKQKLRTQ 106 (546)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (546)
+..-++++..+.+|..+-..+....... .-..+....+++..+.++ .....+-.-...++++....+.+
T Consensus 370 ~~le~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 443 (487)
T 3oja_A 370 KALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYE------EMYVEQQSVQNNAIRDWDMYQHK 443 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCCCSSCCCHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHhhchhhhcccccccCcHHHHHHHHHHHH------HHHHHHHHHhhcchhhhhhhhhH
Confidence 4566788888888888888876654321 112234444444444443 12222333333445555556666
Q ss_pred HHHHHHhhhhcHHHHHHHHHHHHHHHHHhhhHH
Q psy597 107 VRRLVQENAWLRDELANTQQKLQSSEQANSQLE 139 (546)
Q Consensus 107 ~~~~~~~~~~l~~~la~~~~~l~~~~~~~~qle 139 (546)
+..+.++|+-++.++.+....+..+.+.+..+-
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (487)
T 3oja_A 444 ETQLAEENARLKKLNGEADLALASANATLQELV 476 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHH
Confidence 666666666666666666666655555554443
No 317
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=64.04 E-value=83 Score=32.37 Aligned_cols=39 Identities=28% Similarity=0.272 Sum_probs=16.3
Q ss_pred HHHHHHHHhhhhcHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy597 105 TQVRRLVQENAWLRDELANTQQKLQSSEQANSQLEEEKK 143 (546)
Q Consensus 105 ~~~~~~~~~~~~l~~~la~~~~~l~~~~~~~~qlee~~~ 143 (546)
.+.+.+.++..-+...+...+.++.+..+.......+++
T Consensus 537 ~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~ 575 (597)
T 3oja_B 537 KETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVK 575 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444444444444433333
No 318
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=61.42 E-value=22 Score=23.81 Aligned_cols=38 Identities=21% Similarity=0.319 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHhhhH
Q psy597 101 QKLRTQVRRLVQENAWLRDELANTQQKLQSSEQANSQL 138 (546)
Q Consensus 101 ~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~~~~~ql 138 (546)
=.|+.||..|.++|.|+..-++.-|..-..++..+..+
T Consensus 10 YalkDev~eLk~e~k~~k~~le~eqraRk~LE~~vrk~ 47 (61)
T 3l4f_A 10 YALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKV 47 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999988888887777766666666554
No 319
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=59.67 E-value=25 Score=25.92 Aligned_cols=36 Identities=22% Similarity=0.134 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy597 375 DVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELK 410 (546)
Q Consensus 375 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~ 410 (546)
..+-.+...+..+...|+|++|+.+.++|.......
T Consensus 13 n~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~eA 48 (97)
T 2crb_A 13 NLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEA 48 (97)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 346677788999999999999999999998875544
No 320
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=59.46 E-value=24 Score=20.61 Aligned_cols=31 Identities=19% Similarity=0.312 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhhhhcHHHHHHHHHHHHHH
Q psy597 101 QKLRTQVRRLVQENAWLRDELANTQQKLQSS 131 (546)
Q Consensus 101 ~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~ 131 (546)
-+|.+-|..|-.+|..|-++++-++..++.+
T Consensus 4 nQLE~KVEeLl~~~~~Le~eV~RLk~ll~~~ 34 (36)
T 1kd8_B 4 KQLKAKVEELKSKLWHLKNKVARLKKKNAEC 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhccc
Confidence 3567777788888877777777777766654
No 321
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=59.36 E-value=23 Score=25.35 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=11.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHh
Q psy597 91 GHLQNVEAEKQKLRTQVRRLVQE 113 (546)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~ 113 (546)
.-|+.+|...+.|+.+|+.|.++
T Consensus 13 ~klq~~E~rN~~Le~~v~~le~~ 35 (79)
T 3cvf_A 13 QKVQDLETRNAELEHQLRAMERS 35 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHH
Confidence 33444555555555555544433
No 322
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=59.26 E-value=51 Score=24.36 Aligned_cols=26 Identities=27% Similarity=0.457 Sum_probs=15.5
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHhhh
Q psy597 90 AGHLQNVEAEKQKLRTQVRRLVQENA 115 (546)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (546)
...+..+++++.+|+++..+|.++|.
T Consensus 64 ~~~v~eLe~everL~~ENq~L~~e~~ 89 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLLTENE 89 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666664
No 323
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=58.16 E-value=23 Score=26.06 Aligned_cols=35 Identities=31% Similarity=0.341 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Q psy597 497 NVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 531 (546)
Q Consensus 497 ~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~ 531 (546)
+.+..+...+..+...|+|++|+++.++|.....+
T Consensus 13 n~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~e 47 (97)
T 2crb_A 13 NLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSE 47 (97)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 34667778899999999999999999999876544
No 324
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=57.84 E-value=2 Score=30.91 Aligned_cols=39 Identities=26% Similarity=0.390 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhccCCCCC
Q psy597 501 TKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDG 539 (546)
Q Consensus 501 ~~~~La~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 539 (546)
-...+|+=|...|+|+.|+.+|+.+++..........+|
T Consensus 14 e~~k~ARe~Al~GnYdta~~yY~g~~~qI~k~l~~~~d~ 52 (78)
T 2rpa_A 14 ENVKLAREYALLGNYDSAMVYYQGVLDQMNKYLYSVKDT 52 (78)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSCH
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 345788889999999999999999999876655544443
No 325
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=57.63 E-value=28 Score=23.65 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHhhhhcHHHHH
Q psy597 102 KLRTQVRRLVQENAWLRDELA 122 (546)
Q Consensus 102 ~~~~~~~~~~~~~~~l~~~la 122 (546)
.|..+|..|..+|..|..++.
T Consensus 27 ~Le~~v~~L~~~n~~L~~ei~ 47 (63)
T 2wt7_A 27 TLQAETDQLEDEKSALQTEIA 47 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 326
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=57.24 E-value=48 Score=24.13 Aligned_cols=32 Identities=19% Similarity=0.157 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 213 ARLRTLHNLVIQYASQGRYEVAVPLCKQALED 244 (546)
Q Consensus 213 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 244 (546)
..++.+..-|..++..++|.+|..+|+++...
T Consensus 51 ~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~ 82 (106)
T 2vkj_A 51 KKARSLIAEGKDLFETANYGEALVFFEKALNL 82 (106)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHHHcc
Confidence 57888999999999999999999999999863
No 327
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=57.10 E-value=31 Score=28.83 Aligned_cols=66 Identities=14% Similarity=0.188 Sum_probs=48.3
Q ss_pred CCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 287 HDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 364 (546)
Q Consensus 287 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 364 (546)
.+++....+|...+... + .+..+|...... +-....+..|...|..+...|++.+|..+|..+++.
T Consensus 60 knD~RyLklWl~ya~~~---~---~p~~if~~L~~~------~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~ 125 (164)
T 2wvi_A 60 YSDPRFLNLWLKLGRLC---N---EPLDMYSYLHNQ------GIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQ 125 (164)
T ss_dssp TTCHHHHHHHHHHHHHC---S---CHHHHHHHHHHT------TSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHhc---C---CHHHHHHHHHHC------CcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 36777888887777653 3 355555554432 223445778889999999999999999999999986
No 328
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=56.59 E-value=51 Score=23.51 Aligned_cols=49 Identities=24% Similarity=0.350 Sum_probs=28.4
Q ss_pred HHHhhhhhHHHHH---HHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy597 88 ALAGHLQNVEAEK---QKLRTQVRRLVQENAWLRDELANTQQKLQSSEQANSQLEEEKK 143 (546)
Q Consensus 88 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~~~~~qlee~~~ 143 (546)
++-+...++++|+ |-++..+++...+|. .++.+|+.++.....+..++.
T Consensus 11 ~~leLQSALeaEIqAKQ~i~EELs~vr~~ni-------~~eskL~eae~rn~eL~~e~~ 62 (81)
T 1wt6_A 11 TLRELQEALEEEVLTRQSLSREMEAIRTDNQ-------NFASQLREAEARNRDLEAHVR 62 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 3447778888885 456666666666664 444455555554444444433
No 329
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=56.18 E-value=31 Score=23.45 Aligned_cols=37 Identities=30% Similarity=0.371 Sum_probs=26.6
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhcHHHHH
Q psy597 86 MTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDELA 122 (546)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la 122 (546)
+..|-.-+..++.+...|+.+|..|..+..+|..-|.
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666677777888888888888888877776553
No 330
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=56.00 E-value=27 Score=25.77 Aligned_cols=37 Identities=32% Similarity=0.308 Sum_probs=28.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHH
Q psy597 93 LQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQ 129 (546)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~l~ 129 (546)
...+|.++..|+.++..|.+||.-+..|+....+++.
T Consensus 50 ~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~ 86 (90)
T 2wt7_B 50 KHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSE 86 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788888888999999888877777777766654
No 331
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=55.90 E-value=1.5e+02 Score=28.72 Aligned_cols=97 Identities=10% Similarity=0.056 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhhhhcccCcccCCChhhHHHHhhchhhHHHHHHHHHHHHHHHHcCC
Q psy597 417 NVAKTKNNLASCYLKQG---KYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGP 493 (546)
Q Consensus 417 ~~~~~~~~La~~y~~~g---~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~ 493 (546)
........|-++++..| +|.-|+-.+-..-++.+.... ..+...|.+|+...+..+..
T Consensus 240 el~~lQq~LLWlLyd~Ghl~~YPmALgnLgDLEei~pt~gr-------------------p~~~~Lf~~AI~~ar~~Y~~ 300 (489)
T 4gq4_A 240 ELLQLQQKLLWLLYDLGHLERYPMALGNLADLEELEPTPGR-------------------PDPLTLYHKGIASAKTYYRD 300 (489)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHSCCTTS-------------------CCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHhccchhhcchhhhcccCHhhcCCCCCC-------------------CCHHHHHHHHHHHHHHhccc
Confidence 34444555555555544 567777777776666554322 13456788888888877765
Q ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhccC
Q psy597 494 DDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFG 535 (546)
Q Consensus 494 ~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 535 (546)
.+ ..-|..+|-.+.+.+++.+|+.++.++-.....-.+.
T Consensus 301 ~h---vYPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~YnY~ 339 (489)
T 4gq4_A 301 EH---IYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYC 339 (489)
T ss_dssp CC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCC
T ss_pred Cc---ccceeecchHHHHhhhHHHHHHHhhhhhhhhhhcccc
Confidence 44 4456678888899999999999998887776554443
No 332
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=55.79 E-value=14 Score=26.53 Aligned_cols=35 Identities=23% Similarity=0.340 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q psy597 215 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTS 249 (546)
Q Consensus 215 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 249 (546)
.--...+|+-|...|+|+.|+.+|+.+++...+..
T Consensus 12 i~e~~k~ARe~Al~GnYdta~~yY~g~~~qI~k~l 46 (78)
T 2rpa_A 12 IVENVKLAREYALLGNYDSAMVYYQGVLDQMNKYL 46 (78)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 34456789999999999999999999998766544
No 333
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=55.17 E-value=13 Score=24.89 Aligned_cols=31 Identities=10% Similarity=0.178 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcHHHHHHHHH
Q psy597 96 VEAEKQKLRTQVRRLVQENAWLRDELANTQQ 126 (546)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~ 126 (546)
|.++...+-..+..|..+|..|+.++..+..
T Consensus 25 VD~FLd~v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 25 VNEFLAQVRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555666666666666666666555443
No 334
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=54.89 E-value=15 Score=25.12 Aligned_cols=29 Identities=24% Similarity=0.413 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHhhhhcHHHHHHHHHHH
Q psy597 100 KQKLRTQVRRLVQENAWLRDELANTQQKL 128 (546)
Q Consensus 100 ~~~~~~~~~~~~~~~~~l~~~la~~~~~l 128 (546)
...|..+|..|..+|..|..++..+.+.+
T Consensus 32 ~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 32 MKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666667777766666666555443
No 335
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=54.45 E-value=17 Score=26.12 Aligned_cols=35 Identities=14% Similarity=0.270 Sum_probs=29.7
Q ss_pred cCHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhh
Q psy597 80 LNEAQVMTALAGHLQNVEAEKQKLRTQVRRLVQEN 114 (546)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (546)
++-+.++..-..|+..++.+.+.|+.++..|.++|
T Consensus 46 ~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~~~n 80 (80)
T 1hlo_A 46 ASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQN 80 (80)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 55667777788889999999999999999998876
No 336
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=53.84 E-value=18 Score=20.64 Aligned_cols=27 Identities=11% Similarity=0.195 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhhhhcHHHHHHHHHHH
Q psy597 102 KLRTQVRRLVQENAWLRDELANTQQKL 128 (546)
Q Consensus 102 ~~~~~~~~~~~~~~~l~~~la~~~~~l 128 (546)
+|.+-|..|-++|..|.+|++-++.-+
T Consensus 4 QLEdKvEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 566777778888877777777665544
No 337
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=53.54 E-value=14 Score=23.25 Aligned_cols=26 Identities=31% Similarity=0.786 Sum_probs=21.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhcH
Q psy597 93 LQNVEAEKQKLRTQVRRLVQENAWLR 118 (546)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~l~ 118 (546)
+..+|....+.+..+.+|-.+|.||=
T Consensus 16 ~eeler~lrk~kk~iKklEdeNPWLG 41 (50)
T 1a92_A 16 LEELERDLRKLKKKIKKLEEDNPWLG 41 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTHH
T ss_pred HHHHHHHHHHHHHHHHhhhccCCchh
Confidence 45567777888899999999999984
No 338
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=53.39 E-value=1e+02 Score=27.11 Aligned_cols=82 Identities=10% Similarity=0.037 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC
Q psy597 355 EPLCKRALEIREKVL-GKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQG 433 (546)
Q Consensus 355 ~~~~~~al~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g 433 (546)
..++++++..+.... =.+++....+|..++... +.+...|.-.... +-....+..|...|..+...|
T Consensus 97 ~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~~------~~p~~if~~L~~~------~IG~~~AlfYe~wA~~lE~~g 164 (223)
T 4aez_C 97 VTLLERCTREFVRNPLYKDDVRYLRIWMQYVNYI------DEPVELFSFLAHH------HIGQESSIFYEEYANYFESRG 164 (223)
T ss_dssp HHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTTC------SCHHHHHHHHHHT------TCSTTBHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcccccccCCHHHHHHHHHHHHcc------CCHHHHHHHHHHC------CcchhHHHHHHHHHHHHHHcC
Confidence 355666665542210 035677888888777642 3555666555443 224456778889999999999
Q ss_pred CHHHHHHHHHHHHHh
Q psy597 434 KYKEAEILYKQVLTR 448 (546)
Q Consensus 434 ~~~eA~~~~~~al~~ 448 (546)
++.+|..+|+.++..
T Consensus 165 ~~~~A~~Vy~~Gi~~ 179 (223)
T 4aez_C 165 LFQKADEVYQKGKRM 179 (223)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc
Confidence 999999999999986
No 339
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=52.86 E-value=44 Score=21.64 Aligned_cols=37 Identities=19% Similarity=0.330 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHhhh
Q psy597 101 QKLRTQVRRLVQENAWLRDELANTQQKLQSSEQANSQ 137 (546)
Q Consensus 101 ~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~~~~~q 137 (546)
..|+.++..|...|.-|-..|....+.+......|..
T Consensus 12 ~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~ 48 (51)
T 3m91_A 12 HQLEARIDSLAARNSKLMETLKEARQQLLALREEVDR 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777766666665555555555554443
No 340
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=52.83 E-value=18 Score=23.87 Aligned_cols=27 Identities=26% Similarity=0.295 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHhhhhcHHHHHHHHH
Q psy597 100 KQKLRTQVRRLVQENAWLRDELANTQQ 126 (546)
Q Consensus 100 ~~~~~~~~~~~~~~~~~l~~~la~~~~ 126 (546)
...|..+|..|..+|.-|+.++..+++
T Consensus 24 ~~~LE~~v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 24 VKSLENRVAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666677777666666665544
No 341
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=52.43 E-value=13 Score=26.71 Aligned_cols=34 Identities=24% Similarity=0.363 Sum_probs=23.3
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHhhhhcHHHH
Q psy597 88 ALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDEL 121 (546)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 121 (546)
.+..-+..++.|...|+.+|..|..|..+|+.-|
T Consensus 40 e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll 73 (78)
T 1gu4_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566677777777777777777777766544
No 342
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=51.66 E-value=37 Score=24.63 Aligned_cols=31 Identities=19% Similarity=0.239 Sum_probs=24.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy597 380 LNNLALLCQNQSKYEEVERYYQRALEIYELK 410 (546)
Q Consensus 380 ~~~la~~~~~~g~~~eA~~~~~~al~~~~~~ 410 (546)
+...|.-+-..|++++|+.+|..+++.+...
T Consensus 22 lv~~Ave~D~~g~y~eAl~lY~~aie~l~~a 52 (83)
T 2w2u_A 22 YAINAVKADKEGNAEEAITNYKKAIEVLAQL 52 (83)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 3445556678999999999999999986553
No 343
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=51.25 E-value=31 Score=25.00 Aligned_cols=35 Identities=23% Similarity=0.229 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 213 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEK 247 (546)
Q Consensus 213 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 247 (546)
..+..+...|...-..|+|++|+.+|.++++.+..
T Consensus 17 ~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~ 51 (83)
T 2w2u_A 17 EMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQ 51 (83)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 44566777888889999999999999999997554
No 344
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=51.15 E-value=42 Score=27.57 Aligned_cols=81 Identities=10% Similarity=-0.032 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCC
Q psy597 314 NLLNDALTIREKT-LGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSK 392 (546)
Q Consensus 314 ~~~~~al~~~~~~-~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 392 (546)
.++++++..+... .=.+++....+|...+... +++..+|.-.... +-....+..|...|..+...|+
T Consensus 49 ~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~------~dp~~if~~L~~~------~IG~~~AlfYe~wA~~lE~~g~ 116 (152)
T 4a1g_A 49 TLLEHLMKEFLDKKKYHNDPRFISYCLKFAEYN------SDLHQFFEFLYNH------GIGTLSSPLYIAWAGHLEAQGE 116 (152)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTTB------SCHHHHHHHHHTT------TTTTTBHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhc------CCHHHHHHHHHHC------CCcHHHHHHHHHHHHHHHHcCC
Confidence 4455555544221 0045777788887777653 3366666665443 1124567788899999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy597 393 YEEVERYYQRALEI 406 (546)
Q Consensus 393 ~~eA~~~~~~al~~ 406 (546)
+.+|...|+.+++.
T Consensus 117 ~~~A~~Vy~~Gi~~ 130 (152)
T 4a1g_A 117 LQHASAVLQRGIQN 130 (152)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999999985
No 345
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=50.93 E-value=30 Score=28.43 Aligned_cols=66 Identities=11% Similarity=0.086 Sum_probs=47.5
Q ss_pred CCChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 287 HDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 364 (546)
Q Consensus 287 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 364 (546)
.+++....+|...+... +++...|.-.... +-....+..|...|..+...|++.+|..+|+.+++.
T Consensus 65 knD~RyLklWl~ya~~~------~dp~~if~~L~~~------~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 130 (152)
T 4a1g_A 65 HNDPRFISYCLKFAEYN------SDLHQFFEFLYNH------GIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN 130 (152)
T ss_dssp TTCHHHHHHHHHHHTTB------SCHHHHHHHHHTT------TTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHhc------CCHHHHHHHHHHC------CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 36677777777766543 2356666555432 223445778888999999999999999999999876
No 346
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=50.87 E-value=37 Score=22.87 Aligned_cols=35 Identities=20% Similarity=0.190 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHH
Q psy597 99 EKQKLRTQVRRLVQENAWLRDELANTQQKLQSSEQ 133 (546)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~~ 133 (546)
..+.|...|..|..+|..|..++..++..+....+
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777666666666555544443
No 347
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=49.40 E-value=32 Score=22.48 Aligned_cols=31 Identities=19% Similarity=0.247 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHhhhhcHHHHHHHHHHH
Q psy597 98 AEKQKLRTQVRRLVQENAWLRDELANTQQKL 128 (546)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~l~~~la~~~~~l 128 (546)
++..+|+.++..|.+.+.-|..+++.+..++
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666655555555444443
No 348
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=49.05 E-value=80 Score=23.53 Aligned_cols=49 Identities=16% Similarity=0.310 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy597 95 NVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSSEQANSQLEEEKK 143 (546)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~~~~~qlee~~~ 143 (546)
.+..+..+|+.++...-.+..-|...|..-+..-..++....+++.++.
T Consensus 9 ~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE 57 (97)
T 2eqb_B 9 QLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVE 57 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444445555555555555555544
No 349
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=49.04 E-value=43 Score=20.44 Aligned_cols=33 Identities=27% Similarity=0.466 Sum_probs=20.1
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHhhhhcHHHH
Q psy597 89 LAGHLQNVEAEKQKLRTQVRRLVQENAWLRDEL 121 (546)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 121 (546)
|-.-...++.-...|..-|..|..||..||+=|
T Consensus 8 LE~r~k~le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 8 LENRVKDLENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 333444455555666677777777777776543
No 350
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=48.95 E-value=17 Score=25.70 Aligned_cols=30 Identities=17% Similarity=0.205 Sum_probs=26.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Q psy597 503 NNLASCYLKQGKYKEAEILYKQVLTRAHER 532 (546)
Q Consensus 503 ~~La~~y~~~g~~~~A~~~~~~al~~~~~~ 532 (546)
..+|+.+...|++++|..+|-+|+..+++.
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP 50 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQP 50 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 468999999999999999999999988653
No 351
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=48.92 E-value=67 Score=35.90 Aligned_cols=24 Identities=13% Similarity=0.195 Sum_probs=11.7
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHH
Q psy597 88 ALAGHLQNVEAEKQKLRTQVRRLV 111 (546)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~ 111 (546)
.|...+..++.|+++||.|+..|.
T Consensus 1020 ~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1020 ETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555544444
No 352
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=48.86 E-value=44 Score=20.52 Aligned_cols=38 Identities=32% Similarity=0.427 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHh
Q psy597 98 AEKQKLRTQVRRLVQENAWLRDELANTQQKLQSSEQAN 135 (546)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~~~~ 135 (546)
.|..||..-|.||-.+|.-|-..++++...+...+..+
T Consensus 17 kenaklenivarlendnanlekdianlekdianlerdv 54 (56)
T 3he4_A 17 KENAKLENIVARLENDNANLEKDIANLEKDIANLERDV 54 (56)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcchHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhh
Confidence 46678888899999999777777777666666655544
No 353
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=48.84 E-value=1.4e+02 Score=28.92 Aligned_cols=106 Identities=16% Similarity=0.158 Sum_probs=52.8
Q ss_pred hHHhhhhhHHHHHHHHhHhhhHHHHHhhhhhccCCCchHHHHHHHHhhHHHHHcCcCHHHHHHHHHhhhhhHHHHHHHHH
Q psy597 25 EEIMTNTKTVQQGLEALKNEHTSILNSLSETQHGGPVEEEKRNMVKNSLEIIELGLNEAQVMTALAGHLQNVEAEKQKLR 104 (546)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (546)
+-+.+.-+.|-..|+.|++.-..|-++=.++ .+....|+.++..-+.-..+ ..-.+...-..|-.|+.+++
T Consensus 27 d~L~kye~~V~~~l~~L~~~l~~isn~Ts~~-------~~~v~~ik~~~~~~q~~~~~--n~~~~~q~Skkml~~~~~~~ 97 (411)
T 3ghg_C 27 DFLSTYQTKVDKDLQSLEDILHQVENKTSEV-------KQLIKAIQLTYNPDESSKPN--MIDAATLKSRKMLEEIMKYE 97 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHCTTTCCCTT--CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccchhhHHHHHHHHHHHHHhhhhHH-------HHHHHHHHHhhccccCCCCc--chhhHHHHHHHHHHHHHHHH
Confidence 3455566777778888877777776664443 34444444443322211110 11112222223444555555
Q ss_pred HHHHHHHHhhhhcHHHHHHHHHHHHHHHHHhhhHH
Q psy597 105 TQVRRLVQENAWLRDELANTQQKLQSSEQANSQLE 139 (546)
Q Consensus 105 ~~~~~~~~~~~~l~~~la~~~~~l~~~~~~~~qle 139 (546)
..+.+.-....-|+..+.....+++...+.+.+++
T Consensus 98 ~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~ 132 (411)
T 3ghg_C 98 ASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLE 132 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555554455545555555555555555544
No 354
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=48.73 E-value=45 Score=27.80 Aligned_cols=66 Identities=14% Similarity=0.216 Sum_probs=49.2
Q ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 371 KEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 371 ~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
.+++....+|..++..+ ++ +...|...... +-....+..|...|..+...|++.+|.++|..++..
T Consensus 60 knD~RyLklWl~ya~~~---~~---p~~if~~L~~~------~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~ 125 (164)
T 2wvi_A 60 YSDPRFLNLWLKLGRLC---NE---PLDMYSYLHNQ------GIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQ 125 (164)
T ss_dssp TTCHHHHHHHHHHHHHC---SC---HHHHHHHHHHT------TSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHhc---CC---HHHHHHHHHHC------CcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 45678888888888764 33 45555554433 224456778888999999999999999999999985
No 355
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=48.07 E-value=95 Score=24.11 Aligned_cols=32 Identities=25% Similarity=0.339 Sum_probs=24.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q psy597 380 LNNLALLCQNQSKYEEVERYYQRALEIYELKL 411 (546)
Q Consensus 380 ~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~ 411 (546)
+...|.-.-..|+|++|+.+|..+++++....
T Consensus 21 lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~al 52 (117)
T 2cpt_A 21 LASKAAQEDKAGNYEEALQLYQHAVQYFLHVV 52 (117)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHHH
Confidence 33444555677999999999999999887654
No 356
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=47.53 E-value=2.2e+02 Score=35.99 Aligned_cols=76 Identities=14% Similarity=0.253 Sum_probs=59.5
Q ss_pred HHHHHHHhhHHHHHcCcCHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy597 64 EKRNMVKNSLEIIELGLNEAQVMTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSSEQANSQLEEEKK 143 (546)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~~~~~qlee~~~ 143 (546)
++...+...++.-+. -+...-..|..++...++|+++......|-+-|..++..++.++..++..+..|..|+.
T Consensus 2014 ~~l~~ae~~l~~~~~------~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~ 2087 (3245)
T 3vkg_A 2014 EEVEQLENAANELKL------KQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERG 2087 (3245)
T ss_dssp HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 344444445544432 33445567888999999999999999999999999999999999999999998888877
Q ss_pred HH
Q psy597 144 HL 145 (546)
Q Consensus 144 ~l 145 (546)
.+
T Consensus 2088 RW 2089 (3245)
T 3vkg_A 2088 RW 2089 (3245)
T ss_dssp HH
T ss_pred cH
Confidence 43
No 357
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=47.12 E-value=39 Score=24.44 Aligned_cols=34 Identities=26% Similarity=0.360 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 214 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEK 247 (546)
Q Consensus 214 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 247 (546)
.+..+...|...-..|+|++|+.+|.++++.+..
T Consensus 10 ~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~ 43 (83)
T 2v6y_A 10 MARKYAILAVKADKEGKVEDAITYYKKAIEVLSQ 43 (83)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 4556777888888999999999999999987554
No 358
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=47.02 E-value=47 Score=24.00 Aligned_cols=30 Identities=27% Similarity=0.458 Sum_probs=23.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy597 381 NNLALLCQNQSKYEEVERYYQRALEIYELK 410 (546)
Q Consensus 381 ~~la~~~~~~g~~~eA~~~~~~al~~~~~~ 410 (546)
...|.-.-..|+|++|+.+|..+++.+...
T Consensus 15 v~~Ave~D~~g~y~eAl~lY~~aie~l~~~ 44 (83)
T 2v6y_A 15 AILAVKADKEGKVEDAITYYKKAIEVLSQI 44 (83)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 344455567899999999999999986553
No 359
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=46.87 E-value=66 Score=27.16 Aligned_cols=35 Identities=11% Similarity=0.158 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHH
Q psy597 98 AEKQKLRTQVRRLVQENAWLRDELANTQQKLQSSE 132 (546)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~ 132 (546)
.|.-.|..|++...+++.-|+.+|+..........
T Consensus 27 ~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~ 61 (190)
T 4emc_A 27 NENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELK 61 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 33333334444444444444444444444443333
No 360
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=46.78 E-value=28 Score=20.04 Aligned_cols=27 Identities=11% Similarity=0.183 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHhhhhcHHHHHHHHHHH
Q psy597 102 KLRTQVRRLVQENAWLRDELANTQQKL 128 (546)
Q Consensus 102 ~~~~~~~~~~~~~~~l~~~la~~~~~l 128 (546)
+|.+.|..|-++|..|.+|++-++.-+
T Consensus 5 QLEdKVEeLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 5 QIEXKLEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 456666777777766666666555443
No 361
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=46.08 E-value=2.7e+02 Score=28.77 Aligned_cols=129 Identities=9% Similarity=0.093 Sum_probs=74.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhcccCcccCCC
Q psy597 382 NLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDN 461 (546)
Q Consensus 382 ~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~ 461 (546)
.++.......+.+.|...+.+..... .-+..........+|.-+...+...++..++........... ....
T Consensus 219 ~~~~~rlar~d~~~A~~~~~~~~~~~----~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~e~ 290 (618)
T 1qsa_A 219 AVAFASVARQDAENARLMIPSLAQAQ----QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTS----LIER 290 (618)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHT----TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHH----HHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHhhhhcc----CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChH----HHHH
Confidence 33444455568888888887665421 111233334444555555555646677777776543211110 0111
Q ss_pred hhhHHHHhhchhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 462 KPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 527 (546)
Q Consensus 462 ~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~ 527 (546)
...+ ....+++..|...+...- ..........+.+|..+...|+.++|..+|+++..
T Consensus 291 ~~r~-Alr~~d~~~a~~~~~~l~--------~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 291 RVRM-ALGTGDRRGLNTWLARLP--------MEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHH-HHHHTCHHHHHHHHHHSC--------TTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHH-HHHCCCHHHHHHHHHHcc--------ccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 1222 334467766666553321 22334567789999999999999999999998864
No 362
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=45.68 E-value=2.6e+02 Score=28.49 Aligned_cols=60 Identities=22% Similarity=0.192 Sum_probs=38.6
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy597 85 VMTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSSEQANSQLEEEKKH 144 (546)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~~~~~qlee~~~~ 144 (546)
++..+....+..+.+.++++.++....++-+-+..+...+..++...++.+..+.++..+
T Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~ 569 (597)
T 3oja_B 510 VFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSL 569 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHH
Confidence 344445555666666666666666666666666677777777777777777666666554
No 363
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=45.47 E-value=91 Score=27.47 Aligned_cols=56 Identities=21% Similarity=0.252 Sum_probs=44.1
Q ss_pred CHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHhh
Q psy597 81 NEAQVMTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSSEQANS 136 (546)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~~~~~ 136 (546)
+|..+-.-|+..++.+.+....|...+.+...|+.-++..|+...+.+.++.....
T Consensus 161 sde~Ik~yLa~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~ 216 (228)
T 3q0x_A 161 NDSVVKQFLAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYD 216 (228)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57888888999999999999999999999888887777777777666655544433
No 364
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=45.31 E-value=42 Score=24.58 Aligned_cols=39 Identities=21% Similarity=0.260 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHhhhHH
Q psy597 101 QKLRTQVRRLVQENAWLRDELANTQQKLQSSEQANSQLE 139 (546)
Q Consensus 101 ~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~~~~~qle 139 (546)
+.+...+..|.++|..|+.++..+...++.....+.++.
T Consensus 39 ~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p 77 (87)
T 1hjb_A 39 LETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLP 77 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 455667888899998888888777777666666655543
No 365
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=44.64 E-value=1.3e+02 Score=24.69 Aligned_cols=60 Identities=22% Similarity=0.362 Sum_probs=48.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q psy597 87 TALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSSEQANSQLEEEKKHLE 146 (546)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~~~~~qlee~~~~l~ 146 (546)
..+.+-+.+++..-.+--.....+-....+|.+.|...-.+...++..|..++..+..++
T Consensus 52 ~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lE 111 (155)
T 2efr_A 52 KTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLE 111 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777887777777777778888888889999999999999999999998887653
No 366
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=44.06 E-value=16 Score=21.61 Aligned_cols=30 Identities=23% Similarity=0.309 Sum_probs=24.6
Q ss_pred ccCChhHHhhhhhHHHHHHHHhHhhhHHHH
Q psy597 20 TVMNQEEIMTNTKTVQQGLEALKNEHTSIL 49 (546)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (546)
++||=+|+....-....-|+.|++|-++++
T Consensus 6 e~mTLeEtkeQi~~l~~kl~~LkeEKHQLF 35 (38)
T 2l5g_A 6 ERMSLEETKEQILKLEEKLLALQEEKHQLF 35 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457778888888888889999999987765
No 367
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=42.94 E-value=34 Score=24.45 Aligned_cols=37 Identities=19% Similarity=0.242 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHhhh
Q psy597 101 QKLRTQVRRLVQENAWLRDELANTQQKLQSSEQANSQ 137 (546)
Q Consensus 101 ~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~~~~~q 137 (546)
+.+...+..|.++|..|+.++..+...+......+.|
T Consensus 39 ~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~q 75 (78)
T 1gu4_A 39 LETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555678888899988888887776666655554444
No 368
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=42.75 E-value=27 Score=26.05 Aligned_cols=30 Identities=17% Similarity=0.205 Sum_probs=26.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Q psy597 503 NNLASCYLKQGKYKEAEILYKQVLTRAHER 532 (546)
Q Consensus 503 ~~La~~y~~~g~~~~A~~~~~~al~~~~~~ 532 (546)
..+|..+...|+++.|+.+|-+|+..+++.
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP 53 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQP 53 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 368999999999999999999999988764
No 369
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=41.86 E-value=78 Score=31.38 Aligned_cols=100 Identities=13% Similarity=0.054 Sum_probs=63.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHHH
Q psy597 218 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLN 297 (546)
Q Consensus 218 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 297 (546)
...+-.+|++.++..-+...++. ++...... ... .-.....+..++
T Consensus 179 ~n~L~kiYFkl~~~~lckni~k~-i~~~~~~p-~~~--------------------------------~~p~~q~v~Y~Y 224 (455)
T 3t5v_B 179 VNKLNNIYFRIESPQLCSNIFKN-FQPKSMLA-HFN--------------------------------EYQLDQQIEYRY 224 (455)
T ss_dssp HHHHHHHHHHSSCCTTHHHHHHT-HHHHCCCS-CGG--------------------------------GSCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH-hccCCCCc-Chh--------------------------------hCCccceEeeeH
Confidence 34556789999999999888844 33211000 000 112346778899
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHH-HHHhcCC--CCHHHHHHHHHHHHHHHHcCCH
Q psy597 298 ILALVYRDQNKYKEAANLLNDALTI-REKTLGE--NHAAVAATLNNLAVLYGKRGKY 351 (546)
Q Consensus 298 ~la~~~~~~g~~~~A~~~~~~al~~-~~~~~g~--~~~~~~~~~~~la~~~~~~g~~ 351 (546)
.+|.++...++|.+|.+.+..|+.. +....+. .......++..+--+-.-+|++
T Consensus 225 YlGr~~~~~~~y~~A~~~L~~A~~~lcp~~~~~~~~~~n~~~ILkyLIpv~LLlG~~ 281 (455)
T 3t5v_B 225 LLGRYYLLNSQVHNAFVQFNEAFQSLLNLPLTNQAITRNGTRILNYMIPTGLILGKM 281 (455)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHhcCCccccchhhhhHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999998 7542100 0122334455555555556765
No 370
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=41.18 E-value=40 Score=19.37 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHhhhhcHHHHHHHH
Q psy597 102 KLRTQVRRLVQENAWLRDELANTQ 125 (546)
Q Consensus 102 ~~~~~~~~~~~~~~~l~~~la~~~ 125 (546)
+|...|..|-.+|.-|.+|++-+.
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk 27 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 455666777777766666665444
No 371
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=40.92 E-value=95 Score=30.77 Aligned_cols=75 Identities=8% Similarity=0.063 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--cC-CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hhhc
Q psy597 377 AKQLNNLALLCQNQSKYEEVERYYQRALEIYELK--LG-PDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR-AHER 452 (546)
Q Consensus 377 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~--~~-~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~-~~~~ 452 (546)
....+++-.+|++.|+..-+...++.. +...-. .. -.....+..++.+|.++...++|.+|.+.+..|+.. ++..
T Consensus 176 l~l~n~L~kiYFkl~~~~lckni~k~i-~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 176 LYLVNKLNNIYFRIESPQLCSNIFKNF-QPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHHHSSCCTTHHHHHHTH-HHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHh-ccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 344556678999999999998888544 331100 00 011256778889999999999999999999999998 7643
No 372
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=40.52 E-value=35 Score=19.68 Aligned_cols=27 Identities=15% Similarity=0.384 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhhhhcHHHHHHHHHHH
Q psy597 102 KLRTQVRRLVQENAWLRDELANTQQKL 128 (546)
Q Consensus 102 ~~~~~~~~~~~~~~~l~~~la~~~~~l 128 (546)
+|.+-|..|-++|..|.+|++-++.-+
T Consensus 5 QLEdKvEeLl~~~~~L~~EV~RLk~lL 31 (34)
T 2bni_A 5 QIEDKLEEILSKGHHICNELARIKKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 466677777777777777776655443
No 373
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=40.40 E-value=60 Score=23.46 Aligned_cols=35 Identities=20% Similarity=0.150 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 213 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEK 247 (546)
Q Consensus 213 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 247 (546)
..+..+...|.-.-..|+|++|+.+|..+++.+..
T Consensus 11 ~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~ 45 (85)
T 2v6x_A 11 TKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLML 45 (85)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 45566777888888999999999999999997544
No 374
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=40.13 E-value=53 Score=18.92 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhhhhcHHHHHHHHHHH
Q psy597 102 KLRTQVRRLVQENAWLRDELANTQQKL 128 (546)
Q Consensus 102 ~~~~~~~~~~~~~~~l~~~la~~~~~l 128 (546)
+|.+-|..|-.+|..|-++++-++.-+
T Consensus 5 QLEdkVEeLl~~~~~Le~eV~RL~~ll 31 (34)
T 2hy6_A 5 QLADAVEELASANYHLANAVARLAKAV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 566677777777766666666555443
No 375
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=39.88 E-value=54 Score=18.90 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHhhhhcHHHHHHHHH
Q psy597 102 KLRTQVRRLVQENAWLRDELANTQQ 126 (546)
Q Consensus 102 ~~~~~~~~~~~~~~~l~~~la~~~~ 126 (546)
+|..-|..|-++|.-|.+|++-++.
T Consensus 5 QLE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 5 QLEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 4555566666666555555554443
No 376
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=39.76 E-value=40 Score=29.24 Aligned_cols=37 Identities=14% Similarity=0.155 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Q psy597 496 SNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 532 (546)
Q Consensus 496 ~~~~~~~~~La~~y~~~g~~~~A~~~~~~al~~~~~~ 532 (546)
.......+.+|.++...++|.+|.+.+..|+...++.
T Consensus 11 ~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~ 47 (203)
T 3t5x_A 11 AQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS 47 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh
Confidence 4567788899999999999999999999999987754
No 377
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=39.35 E-value=1.6e+02 Score=32.43 Aligned_cols=70 Identities=14% Similarity=0.123 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHH-----------------HHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Q psy597 294 TMLNILALVYRDQNKYKEAANLLNDALTIR-----------------EKTLGENHAAVAATLNNLAVLYGKRGKYKEAEP 356 (546)
Q Consensus 294 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----------------~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~ 356 (546)
..-+.+|.+|...|++++|..+|++|-.-. ... +........|.....++...+-++-++.
T Consensus 841 ~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~--e~~~~~~~YY~hV~~LFE~~~a~~~vi~ 918 (950)
T 4gq2_M 841 IAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY--HHQNLLSCYYLHLSKKLFEESAYIDALE 918 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHT--TTCSHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcc--cccchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 345889999999999999999998865211 000 1112233467777888888888888888
Q ss_pred HHHHHHHHH
Q psy597 357 LCKRALEIR 365 (546)
Q Consensus 357 ~~~~al~~~ 365 (546)
+.+.|+...
T Consensus 919 fA~lAI~~~ 927 (950)
T 4gq2_M 919 FSLLADASK 927 (950)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHhhc
Confidence 888888753
No 378
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=39.14 E-value=25 Score=26.73 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhc
Q psy597 95 NVEAEKQKLRTQVRRLVQENAWL 117 (546)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~l 117 (546)
.+..+|+.|..|++.|..+|.||
T Consensus 87 kl~~eKe~L~~ql~~Lq~q~~~l 109 (110)
T 2v4h_A 87 KLVEKKEYLQEQLEQLQREFNKL 109 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHhHHHHHHHHHHHHHHHHHhc
Confidence 35556777777777777777776
No 379
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=39.10 E-value=79 Score=23.57 Aligned_cols=46 Identities=17% Similarity=0.260 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy597 99 EKQKLRTQVRRLVQENAWLRDELANTQQKLQSSEQANSQLEEEKKH 144 (546)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~~~~~qlee~~~~ 144 (546)
+..++|.++++|..++.-...++..++..+..-...-...+..++.
T Consensus 6 ~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ 51 (97)
T 2eqb_B 6 NYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADK 51 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666666666665555555555555443
No 380
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=38.94 E-value=49 Score=36.48 Aligned_cols=109 Identities=12% Similarity=-0.022 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHH
Q psy597 214 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVA 293 (546)
Q Consensus 214 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 293 (546)
++-.-+.+|.+|...|++++|..+|++|-........... ... ...++ +.. .+......
T Consensus 839 t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~-~~~-~~~~l------------------l~~-~e~~~~~~ 897 (950)
T 4gq2_M 839 DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFA-VLR-EFQEI------------------AEK-YHHQNLLS 897 (950)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCG-GGH-HHHHH------------------HHH-TTTCSHHH
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCccccc-chh-hhhhc------------------cCc-ccccchhH
Confidence 3344588999999999999999999887421100000000 000 00000 000 11222344
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHH
Q psy597 294 TMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHA-AVAATLNNLAVLYGK 347 (546)
Q Consensus 294 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~-~~~~~~~~la~~~~~ 347 (546)
..|.....++...+-++-++...+.|+.... .+++ .....+..+-.....
T Consensus 898 ~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~----~dd~~l~~~l~~r~f~~a~a 948 (950)
T 4gq2_M 898 CYYLHLSKKLFEESAYIDALEFSLLADASKE----TDDEDLSIAITHETLKTACA 948 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC----SCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcc----cCCccchHHHHHHHHHHHhh
Confidence 5677888888889999999999999987642 2333 333445554444433
No 381
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=38.77 E-value=45 Score=23.48 Aligned_cols=28 Identities=18% Similarity=0.215 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy597 296 LNILALVYRDQNKYKEAANLLNDALTIR 323 (546)
Q Consensus 296 ~~~la~~~~~~g~~~~A~~~~~~al~~~ 323 (546)
-..+|..+...|++++|..+|-+|+..+
T Consensus 20 eV~~GE~L~~~g~~~~~~~hf~nAl~Vc 47 (73)
T 3ax2_A 20 EIQLGEELLAQGDYEKGVDHLTNAIAVC 47 (73)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHc
Confidence 4568999999999999999999999886
No 382
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=38.64 E-value=55 Score=18.89 Aligned_cols=28 Identities=14% Similarity=0.183 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhhhhcHHHHHHHHHHHH
Q psy597 102 KLRTQVRRLVQENAWLRDELANTQQKLQ 129 (546)
Q Consensus 102 ~~~~~~~~~~~~~~~l~~~la~~~~~l~ 129 (546)
+|.+.|..|-.++..|-+|++-++.-|+
T Consensus 5 QledKvEel~~~~~~l~nEv~Rl~~lLg 32 (34)
T 2r2v_A 5 QVADKLEEVASKLYHNANELARVAKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 4556677777777666666666655543
No 383
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=38.13 E-value=66 Score=23.95 Aligned_cols=28 Identities=18% Similarity=0.215 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy597 296 LNILALVYRDQNKYKEAANLLNDALTIR 323 (546)
Q Consensus 296 ~~~la~~~~~~g~~~~A~~~~~~al~~~ 323 (546)
-..+|..+...|+++.|+.+|-+|+.++
T Consensus 23 eV~lGE~L~~~g~~e~av~Hf~nAl~Vc 50 (95)
T 1om2_A 23 EIQLGEELLAQGDYEKGVDHLTNAIAVC 50 (95)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHc
Confidence 3568999999999999999999999887
No 384
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=38.06 E-value=84 Score=28.33 Aligned_cols=54 Identities=11% Similarity=0.148 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q psy597 93 LQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSSEQANSQLEEEKKHLE 146 (546)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~~~~~qlee~~~~l~ 146 (546)
||.++.+..+|+.....|-.+-.-|.++++.+...+......+..++..++.++
T Consensus 13 LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e 66 (256)
T 3na7_A 13 ISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNE 66 (256)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 385
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=37.57 E-value=64 Score=23.87 Aligned_cols=35 Identities=11% Similarity=0.246 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 213 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEK 247 (546)
Q Consensus 213 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 247 (546)
..+..+...|.-.-..|+|++|+.+|..+++.+..
T Consensus 13 ~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~ 47 (93)
T 1wfd_A 13 TAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQ 47 (93)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 34556778888889999999999999999997654
No 386
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=37.18 E-value=1.1e+02 Score=21.87 Aligned_cols=19 Identities=32% Similarity=0.477 Sum_probs=8.2
Q ss_pred HHHhhhhcHHHHHHHHHHH
Q psy597 110 LVQENAWLRDELANTQQKL 128 (546)
Q Consensus 110 ~~~~~~~l~~~la~~~~~l 128 (546)
|.++|.-|++|.+.-+.++
T Consensus 53 L~~en~qLk~E~~~wq~Rl 71 (81)
T 2jee_A 53 LERENNHLKEQQNGWQERL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444
No 387
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=36.62 E-value=1.2e+02 Score=21.99 Aligned_cols=35 Identities=20% Similarity=0.279 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q psy597 377 AKQLNNLALLCQNQSKYEEVERYYQRALEIYELKL 411 (546)
Q Consensus 377 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~ 411 (546)
+..+...|.-.-..|+|++|+.+|..+++.+....
T Consensus 16 A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~al 50 (86)
T 4a5x_A 16 AATVLKRAVELDSESRYPQALVCYQEGIDLLLQVL 50 (86)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 34455566667789999999999999999876653
No 388
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=36.58 E-value=87 Score=20.34 Aligned_cols=26 Identities=8% Similarity=0.113 Sum_probs=12.5
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHh
Q psy597 88 ALAGHLQNVEAEKQKLRTQVRRLVQE 113 (546)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (546)
.|++.++.+-.++.+|..+|.-|..+
T Consensus 8 ~Lss~V~~L~~kVdqLssdV~al~~~ 33 (52)
T 1jcd_A 8 QASSDAQTANAKADQASNDANAARSD 33 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555544444443
No 389
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=36.56 E-value=1.6e+02 Score=23.54 Aligned_cols=51 Identities=14% Similarity=0.164 Sum_probs=25.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHhhhHHHH
Q psy597 91 GHLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSSEQANSQLEEE 141 (546)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~~~~~qlee~ 141 (546)
..+...+.|...|.-++..+.-.+.-+..++..++..+......+..++.+
T Consensus 82 ~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~ 132 (138)
T 3hnw_A 82 LDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETE 132 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555555555555555555555433
No 390
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=36.27 E-value=99 Score=20.91 Aligned_cols=39 Identities=21% Similarity=0.314 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHH
Q psy597 94 QNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSSE 132 (546)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~ 132 (546)
+.-..+.+.|..++..|.++|.-|..+++.++...+...
T Consensus 19 ~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 19 QKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455667777788888888766666666555544433
No 391
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=36.18 E-value=77 Score=27.40 Aligned_cols=61 Identities=13% Similarity=0.027 Sum_probs=44.4
Q ss_pred ChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHH
Q psy597 289 HPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYK 352 (546)
Q Consensus 289 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~ 352 (546)
....+...+.+|.++...++|.+|.+.+..|+..++.. .......++..+--+-.-+|++.
T Consensus 10 ~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~---~~~~k~~IL~yLIp~~Ll~G~iP 70 (203)
T 3t5x_A 10 TAQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS---SQKNKRMILIYLLPVKMLLGHMP 70 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT---CHHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh---HHHHHHHHHHHHHHHHHHcCCCC
Confidence 35667888999999999999999999999999886432 12334445555555556667754
No 392
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=36.15 E-value=88 Score=20.31 Aligned_cols=35 Identities=6% Similarity=0.145 Sum_probs=24.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHH
Q psy597 92 HLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQ 126 (546)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~ 126 (546)
.+..+..+++.|-.+|..|..+..-++.++...+.
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~ 39 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAARSDAQAAKD 39 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667778888888888888877777765553333
No 393
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=36.08 E-value=1.4e+02 Score=33.29 Aligned_cols=18 Identities=22% Similarity=0.381 Sum_probs=6.7
Q ss_pred hHHHHHHHHHHHHHHHHH
Q psy597 95 NVEAEKQKLRTQVRRLVQ 112 (546)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~ 112 (546)
.++.+..+++.++.++..
T Consensus 988 ~L~~e~~~l~~~~~~~~k 1005 (1080)
T 2dfs_A 988 SLQEEIAKLRKELHQTQT 1005 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 394
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=35.85 E-value=2.1e+02 Score=24.61 Aligned_cols=86 Identities=12% Similarity=0.093 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCC
Q psy597 356 PLCKRALEIREKVLG-KEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGK 434 (546)
Q Consensus 356 ~~~~~al~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~ 434 (546)
.++++++..+..... .++|....+|..++..+ ..+...++...|.-.... +-....+..|...|..+...|+
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~------~IG~~~AlfYe~wA~~lE~~g~ 130 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNK------GIGTKLSLFYEEFSKLLENAQF 130 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHH------TSSTTBHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHC------CCcHHHHHHHHHHHHHHHHcCC
Confidence 466776665532210 35688888888888876 234466888888776654 2245567788899999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy597 435 YKEAEILYKQVLTR 448 (546)
Q Consensus 435 ~~eA~~~~~~al~~ 448 (546)
+.+|..+|+.+++.
T Consensus 131 ~~~A~~Vy~~GI~~ 144 (202)
T 3esl_A 131 FLEAKVLLELGAEN 144 (202)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999999985
No 395
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=35.81 E-value=1.2e+02 Score=21.75 Aligned_cols=43 Identities=26% Similarity=0.427 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy597 101 QKLRTQVRRLVQENAWLRDELANTQQKLQSSEQANSQLEEEKK 143 (546)
Q Consensus 101 ~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~~~~~qlee~~~ 143 (546)
+-|+..|..|.++|.-|..+...++..-........++.++..
T Consensus 23 ~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~ 65 (81)
T 2jee_A 23 TLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQN 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 3344455555555544444444444433334444444444433
No 396
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=35.54 E-value=2e+02 Score=24.26 Aligned_cols=43 Identities=14% Similarity=0.088 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHhhhHH
Q psy597 97 EAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSSEQANSQLE 139 (546)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~~~~~qle 139 (546)
+-.+++|..++.+|.+++.-..+|+..++.+++..+.....++
T Consensus 19 d~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~ 61 (190)
T 4emc_A 19 DLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELK 61 (190)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 3345666667777777776666667777777766666664333
No 397
>1et1_A Parathyroid hormone; helical dimer, hormone/growth factor complex; 0.90A {Homo sapiens} SCOP: j.15.1.1 PDB: 1hpy_A 1zwa_A 1hph_A 1zwb_A 1zwd_A 1zwc_A 1zwe_A 1hth_A* 1fvy_A 3c4m_C*
Probab=35.43 E-value=67 Score=18.71 Aligned_cols=20 Identities=35% Similarity=0.524 Sum_probs=16.1
Q ss_pred cCHHHHHHHHHhhhhhHHHH
Q psy597 80 LNEAQVMTALAGHLQNVEAE 99 (546)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~ 99 (546)
.+|.|.|-..+.|++.++..
T Consensus 2 VSE~QLMHd~gr~~q~~~R~ 21 (34)
T 1et1_A 2 VSEIQLMHNLGKHLNSMERV 21 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHH
Confidence 46889999999998877653
No 398
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=34.92 E-value=1e+02 Score=24.95 Aligned_cols=54 Identities=17% Similarity=0.192 Sum_probs=38.9
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy597 387 CQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 448 (546)
Q Consensus 387 ~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~~~eA~~~~~~al~~ 448 (546)
+..+|+-++=...+...+. +.+..+..+..+|.+|.+.|+..+|.+++.+|-+.
T Consensus 101 lv~~~KkDqLdki~~~~l~--------n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 101 LVIQGKRDKLEEIGREILK--------NNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHTTCHHHHHHHHHHHC----------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHhccHhHHHHHHHHHhc--------cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 3456666655555544322 24445778899999999999999999999998874
No 399
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=34.09 E-value=37 Score=23.10 Aligned_cols=30 Identities=20% Similarity=0.287 Sum_probs=12.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhcHHHH
Q psy597 92 HLQNVEAEKQKLRTQVRRLVQENAWLRDEL 121 (546)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 121 (546)
|+..++.+...|..+...|..+..-|+.+|
T Consensus 31 ~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 31 RMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444433
No 400
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=32.56 E-value=1.4e+02 Score=21.40 Aligned_cols=45 Identities=16% Similarity=0.188 Sum_probs=34.1
Q ss_pred HHHHHHHHhhHHHHHcCcCHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhc
Q psy597 63 EEKRNMVKNSLEIIELGLNEAQVMTALAGHLQNVEAEKQKLRTQVRRLVQENAWL 117 (546)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 117 (546)
-.|..+|....+-|. .|-...+.++.++..|+.++..|.+....|
T Consensus 36 ~sK~~iL~~Ai~YI~----------~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 36 ASRAQILDKATEYIQ----------YMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp CCHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 468888888887663 466777778888888888888887776544
No 401
>1bwx_A Parathyroid hormone; peptide hormone, solution structure; NMR {Homo sapiens} SCOP: j.15.1.1 PDB: 1zwf_A 1zwg_A* 2l1x_A
Probab=32.23 E-value=26 Score=21.03 Aligned_cols=20 Identities=35% Similarity=0.524 Sum_probs=17.1
Q ss_pred cCHHHHHHHHHhhhhhHHHH
Q psy597 80 LNEAQVMTALAGHLQNVEAE 99 (546)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~ 99 (546)
.+|.|.|-.+..|++.++..
T Consensus 2 VSe~QLMHd~g~~~q~~~R~ 21 (39)
T 1bwx_A 2 VSEIQLMHNLGKHLNSMERV 21 (39)
T ss_dssp CSSHHHHHHTTSSCSSHHHH
T ss_pred chHHHHHHHhhHHHHHHHHH
Confidence 46899999999999988764
No 402
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=32.13 E-value=1.4e+02 Score=21.41 Aligned_cols=33 Identities=24% Similarity=0.288 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy597 378 KQLNNLALLCQNQSKYEEVERYYQRALEIYELK 410 (546)
Q Consensus 378 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~ 410 (546)
..+...|.-.-..|++++|+.+|..+++.+...
T Consensus 14 ~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~a 46 (85)
T 2v6x_A 14 IELVQKAIDLDTATQYEEAYTAYYNGLDYLMLA 46 (85)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 334445555667899999999999999987654
No 403
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=31.68 E-value=57 Score=18.85 Aligned_cols=25 Identities=12% Similarity=0.292 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHhhhhcHHHHHHHHH
Q psy597 102 KLRTQVRRLVQENAWLRDELANTQQ 126 (546)
Q Consensus 102 ~~~~~~~~~~~~~~~l~~~la~~~~ 126 (546)
+|...|..|-.+|..|.+|++-+..
T Consensus 5 QLEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 5 QIEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4666777777777777777665544
No 404
>1zb1_A BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking, protein transport; 1.95A {Saccharomyces cerevisiae}
Probab=31.40 E-value=3.6e+02 Score=25.88 Aligned_cols=120 Identities=11% Similarity=0.068 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHhhc------HHHHHHHHHHHHHHHHHh--------cCCCCHHHHHHHHHHHHHHHHcCCHHHHH-
Q psy597 291 DVATMLNILALVYRDQNK------YKEAANLLNDALTIREKT--------LGENHAAVAATLNNLAVLYGKRGKYKEAE- 355 (546)
Q Consensus 291 ~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~~~~--------~g~~~~~~~~~~~~la~~~~~~g~~~~A~- 355 (546)
..+.+++++|.+|...+. ...|..+|++|.-++.-. ..+-++....++..+.......--+.+|+
T Consensus 121 E~a~vLfNlaal~s~~A~~~~r~~lk~A~~~fq~AAG~f~~l~~~~~~~~~~Dls~~~l~~L~~l~LAQAQE~~~~Kai~ 200 (392)
T 1zb1_A 121 EKSCTLFNIAVIFTQIARENINEDYKNSIANLTKAFSCFEYLSENFLNSPSVDLQSENTRFLANICHAEAQELFVLKLLN 200 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHHHHHHHCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred -------------------HHHHHHHHHHHHhcCC----------------CChHHHHHHHHHHHHHHHcCCHHHHHHHH
Q psy597 356 -------------------PLCKRALEIREKVLGK----------------EHPDVAKQLNNLALLCQNQSKYEEVERYY 400 (546)
Q Consensus 356 -------------------~~~~~al~~~~~~~~~----------------~~~~~~~~~~~la~~~~~~g~~~eA~~~~ 400 (546)
.+|..+.......... .....+.+++..|..+...+++.+|+.++
T Consensus 201 ~~~~~~k~~liAkLa~~~~~~Y~~a~~~l~~~~~~~~~~~~~~w~~~v~~K~~~~~A~A~y~~a~~~~e~~k~GeaIa~L 280 (392)
T 1zb1_A 201 DQISSKQYTLISKLSRATCNLFQKCHDFMKEIDDDVAIYGEPKWKTTVTCKLHFYKSLSAYYHGLHLEEENRVGEAIAFL 280 (392)
T ss_dssp STTGGGCHHHHHHHHHHHHHHHHHHHHHHHSCCCTTTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred ccccCCchhHHHHHHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHH
Q ss_pred HHHHHHHHHh
Q psy597 401 QRALEIYELK 410 (546)
Q Consensus 401 ~~al~~~~~~ 410 (546)
+.|.+.....
T Consensus 281 ~~A~~~l~~a 290 (392)
T 1zb1_A 281 DFSMQQLISS 290 (392)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
No 405
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=31.04 E-value=41 Score=22.74 Aligned_cols=31 Identities=16% Similarity=0.238 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHhhhhcHHHHHHHHHHHH
Q psy597 99 EKQKLRTQVRRLVQENAWLRDELANTQQKLQ 129 (546)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~l~~~la~~~~~l~ 129 (546)
..+.|...|..|..+|..|..++..+...+.
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~ 53 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVA 53 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777666666655554443
No 406
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=30.96 E-value=28 Score=23.00 Aligned_cols=18 Identities=17% Similarity=0.302 Sum_probs=7.9
Q ss_pred hhHHHHHHHHHHHHHHHH
Q psy597 94 QNVEAEKQKLRTQVRRLV 111 (546)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~ 111 (546)
..++.|...|+.++..|.
T Consensus 32 ~~L~~eN~~L~~~~~~L~ 49 (55)
T 1dh3_A 32 AVLENQNKTLIEELKALK 49 (55)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 407
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=30.83 E-value=2e+02 Score=22.69 Aligned_cols=41 Identities=20% Similarity=0.444 Sum_probs=26.7
Q ss_pred HHHHHHHHhhhhcHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q psy597 105 TQVRRLVQENAWLRDELANTQQKLQSSEQANSQLEEEKKHL 145 (546)
Q Consensus 105 ~~~~~~~~~~~~l~~~la~~~~~l~~~~~~~~qlee~~~~l 145 (546)
....+|...-.+|-..+..+..++..-+.....+...++.+
T Consensus 69 E~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkl 109 (129)
T 2fxo_A 69 ERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKL 109 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666777777777777777766666666644
No 408
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=30.22 E-value=1.6e+02 Score=21.59 Aligned_cols=33 Identities=15% Similarity=0.223 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy597 378 KQLNNLALLCQNQSKYEEVERYYQRALEIYELK 410 (546)
Q Consensus 378 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~ 410 (546)
..+...|.-.-..|+|++|+.+|..+++.+...
T Consensus 16 i~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~a 48 (93)
T 1wfd_A 16 VAVLKRAVELDAESRYQQALVCYQEGIDMLLQV 48 (93)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 334455566677899999999999999987765
No 409
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=29.58 E-value=89 Score=19.11 Aligned_cols=20 Identities=20% Similarity=0.406 Sum_probs=9.0
Q ss_pred hhhhhHHHHHHHHHHHHHHH
Q psy597 91 GHLQNVEAEKQKLRTQVRRL 110 (546)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~ 110 (546)
..+..|.+|..|-+.++..|
T Consensus 9 qkI~kVdrEI~Kte~kI~~l 28 (42)
T 2l5g_B 9 QNMDRVDREITMVEQQISKL 28 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433
No 410
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=29.49 E-value=3.5e+02 Score=26.83 Aligned_cols=35 Identities=14% Similarity=0.040 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy597 310 KEAANLLNDALTIREKTLGENHAAVAATLNNLAVL 344 (546)
Q Consensus 310 ~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~ 344 (546)
++|+++|++|+...++....+++.....+..++..
T Consensus 449 ~kAi~~Y~~Ai~~L~k~~~tdd~~~v~~~~~~ak~ 483 (526)
T 2wb7_A 449 QGAIDEYKAAINDLQKAAQQDDYQMFLNYLNAAKK 483 (526)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHhhh
Confidence 45666666666666666545566555555555543
No 411
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=29.40 E-value=1.5e+02 Score=20.86 Aligned_cols=48 Identities=17% Similarity=0.140 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy597 96 VEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSSEQANSQLEEEKK 143 (546)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~~~~~qlee~~~ 143 (546)
++.|.+.++..|..|-.+...++.+++...+..+..-.-.-.++.++.
T Consensus 3 l~~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIa 50 (74)
T 2xv5_A 3 SARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIH 50 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666555555555555544333333333333334444443
No 412
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=28.89 E-value=95 Score=23.00 Aligned_cols=67 Identities=15% Similarity=0.037 Sum_probs=44.0
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy597 298 ILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 368 (546)
Q Consensus 298 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 368 (546)
..|..++..|+|-+|-+.++..-...+.. .......-+....|......|+. |...+.+++......
T Consensus 6 ~~~~~lfn~g~~~eaHEvlE~~W~~~~~~--~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~~L~~~ 72 (94)
T 2cwy_A 6 EEVLGLWRAGRYYEVHEVLEPYWLKATGE--ERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEARLEGL 72 (94)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCHH--HHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCCCc--hHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHHHhC
Confidence 34677788899999999999887653110 00112223333444555678888 999999999876544
No 413
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=28.63 E-value=4.4e+02 Score=26.01 Aligned_cols=39 Identities=26% Similarity=0.280 Sum_probs=20.6
Q ss_pred hHHHHHHHHhHhhhHHHHHhhhhhccCCCchHHHHHHHHhhHHHHH
Q psy597 32 KTVQQGLEALKNEHTSILNSLSETQHGGPVEEEKRNMVKNSLEIIE 77 (546)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (546)
+.|-..|+.|++.-.+|-++-.+. .+...+|+.+++..+
T Consensus 96 ~~V~~~LqeLe~~l~~lsn~Ts~~-------~~~i~~Iq~slk~~Q 134 (464)
T 1m1j_B 96 KTVKPVLRDLKDRVAKFSDTSTTM-------YQYVNMIDNKLVKTQ 134 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred hhhHhHHHHHHHHHHHHhhhhhHH-------HHHHHHHHHHhhccc
Confidence 335556666666665555443332 344555666655443
No 414
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=28.03 E-value=1.3e+02 Score=23.39 Aligned_cols=30 Identities=33% Similarity=0.420 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhcHHHHHHHHH
Q psy597 97 EAEKQKLRTQVRRLVQENAWLRDELANTQQ 126 (546)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~l~~~la~~~~ 126 (546)
+++...||.||..+..+|..|.-++.+++.
T Consensus 19 e~~I~~LR~qid~~~~e~a~l~leldn~~~ 48 (119)
T 3ol1_A 19 EEEMRELRRQVDQLTNDKARVEVERDNLAE 48 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444433
No 415
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=27.66 E-value=2.7e+02 Score=24.15 Aligned_cols=18 Identities=22% Similarity=0.464 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy597 97 EAEKQKLRTQVRRLVQEN 114 (546)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~ 114 (546)
+.+...|..++++|.++.
T Consensus 138 ~~~~~~L~~e~~~l~~~~ 155 (213)
T 1ik9_A 138 QAKNEHLQKENERLLRDW 155 (213)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 416
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=27.62 E-value=1.6e+02 Score=20.70 Aligned_cols=52 Identities=17% Similarity=0.236 Sum_probs=38.9
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHhh
Q psy597 85 VMTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSSEQANS 136 (546)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~~~~~ 136 (546)
+|.++-.-++++..++..+...+..+.+|-.++...|....-..+..+....
T Consensus 3 ~m~aiKkkmqaLk~Ekdna~e~~e~lE~ERdFYf~KLRdiE~l~q~~e~e~~ 54 (75)
T 3mtu_A 3 SMDAIKKKMQMLKLDKENALDRAEQAEADKDFYFGKLRNIELICQENEGEND 54 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhH
Confidence 4566666777788888888888888888888888888777777776655443
No 417
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=27.57 E-value=71 Score=31.64 Aligned_cols=35 Identities=17% Similarity=0.079 Sum_probs=30.1
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy597 331 HAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 365 (546)
Q Consensus 331 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 365 (546)
......++..+|.+|...|+|++|..++++++...
T Consensus 186 r~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~~ 220 (454)
T 3myv_A 186 RMNKYAARALLARIYLYHDDNRKAFDLADQLIKDA 220 (454)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred eecHHHHHHHHHHHHHhcccHHHHHHHHHHHHhCC
Confidence 44556788899999999999999999999999754
No 418
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=27.43 E-value=1.6e+02 Score=20.63 Aligned_cols=39 Identities=28% Similarity=0.284 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy597 102 KLRTQVRRLVQENAWLRDELANTQQKLQSSEQANSQLEEEKK 143 (546)
Q Consensus 102 ~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~~~~~qlee~~~ 143 (546)
+|..-+..|.---+||.-|...+|++| .+.+.++|...+
T Consensus 11 ~LE~sld~LQTrfARLLaEy~ssQ~KL---KqRit~LE~~~~ 49 (74)
T 3swf_A 11 RMESSVDLLQTRFARILAEYESMQQKL---KQRLTKVEKFLK 49 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhc
Confidence 333333333333444444445555444 444444444433
No 419
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=27.33 E-value=83 Score=31.16 Aligned_cols=36 Identities=14% Similarity=0.176 Sum_probs=30.7
Q ss_pred CChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy597 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIR 323 (546)
Q Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 323 (546)
.......++..+|.+|...|+|++|..+.++++...
T Consensus 185 gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~~ 220 (454)
T 3myv_A 185 GRMNKYAARALLARIYLYHDDNRKAFDLADQLIKDA 220 (454)
T ss_dssp TSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CeecHHHHHHHHHHHHHhcccHHHHHHHHHHHHhCC
Confidence 345666788899999999999999999999998753
No 420
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=27.26 E-value=1.9e+02 Score=21.44 Aligned_cols=71 Identities=21% Similarity=0.333 Sum_probs=38.7
Q ss_pred HHHHhhHHHHHcCcCHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy597 67 NMVKNSLEIIELGLNEAQVMTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSSEQANSQLEEEKK 143 (546)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~~~~~qlee~~~ 143 (546)
..+...|..+..- |+ .|...|..++.++..+..++..+..+...|..+=.............+..++.+..
T Consensus 7 ~~l~~eL~~l~~e--E~----~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~ 77 (96)
T 3q8t_A 7 EQLQRELKELALE--EE----RLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELK 77 (96)
T ss_dssp HHHHHHHHHHHHH--HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HH----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555421 22 35566677777777777777777777666655444444444444444444444433
No 421
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=26.81 E-value=92 Score=30.90 Aligned_cols=35 Identities=20% Similarity=0.310 Sum_probs=30.4
Q ss_pred ChhHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q psy597 289 HPDVATMLNILALVYRDQNKYKEAANLLNDALTIR 323 (546)
Q Consensus 289 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 323 (546)
......++..+|.+|...|+|++|..+.++++...
T Consensus 192 r~tk~aa~allArvyL~~~~~~~A~~~a~~vi~~~ 226 (461)
T 3kez_A 192 KVNRWAAMTLLSRVYLYKGEYNEALTMAENAIKGA 226 (461)
T ss_dssp SCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred eeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 45667788899999999999999999999998753
No 422
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=26.61 E-value=1.4e+02 Score=27.88 Aligned_cols=21 Identities=14% Similarity=0.060 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHhhhHH
Q psy597 119 DELANTQQKLQSSEQANSQLE 139 (546)
Q Consensus 119 ~~la~~~~~l~~~~~~~~qle 139 (546)
..|...+.++++..+.+.+++
T Consensus 33 ~~l~~~~~~i~~l~~~i~~l~ 53 (323)
T 1lwu_C 33 EMWRVNQQFVTRLQQQLVDIR 53 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333334455555555555444
No 423
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=26.55 E-value=2.7e+02 Score=22.94 Aligned_cols=69 Identities=7% Similarity=-0.065 Sum_probs=47.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC-C--hHHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy597 339 NNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKE-H--PDVAKQL-NNLALLCQNQSKYEEVERYYQRALEIYELK 410 (546)
Q Consensus 339 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~--~~~~~~~-~~la~~~~~~g~~~eA~~~~~~al~~~~~~ 410 (546)
+.-|..++..|+|-+|-+.++.+-... .+++ . ...+.+. ...|..+...|+...|...+.+++..+...
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~---~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~~~ 108 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNY---GRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRGV 108 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTT---CSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 455677778899999999988876542 0000 0 1223344 445666778999999999999999986554
No 424
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=26.44 E-value=75 Score=31.56 Aligned_cols=35 Identities=23% Similarity=0.314 Sum_probs=30.2
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy597 331 HAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 365 (546)
Q Consensus 331 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 365 (546)
......++..+|.+|...|+|++|..++++++...
T Consensus 192 r~tk~aa~allArvyL~~~~~~~A~~~a~~vi~~~ 226 (461)
T 3kez_A 192 KVNRWAAMTLLSRVYLYKGEYNEALTMAENAIKGA 226 (461)
T ss_dssp SCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred eeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 45556788899999999999999999999999753
No 425
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=25.98 E-value=1.9e+02 Score=21.04 Aligned_cols=49 Identities=20% Similarity=0.314 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH-HHHHHHHH
Q psy597 376 VAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTK-NNLASCYL 430 (546)
Q Consensus 376 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~-~~La~~y~ 430 (546)
.+.....-|.-++..++|.+|...|+++... .++|..-.++ +.++.|--
T Consensus 52 ~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~------ten~~i~ki~~fyl~ec~k 101 (106)
T 2vkj_A 52 KARSLIAEGKDLFETANYGEALVFFEKALNL------SDNEEIKKIASFYLEECRK 101 (106)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHcc------ccCHHHHHHHHHHHHHHHH
Confidence 3555666677788999999999999999987 5567666555 56666543
No 426
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=25.64 E-value=2.1e+02 Score=21.42 Aligned_cols=56 Identities=14% Similarity=0.194 Sum_probs=38.5
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHhhhhc------HHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy597 88 ALAGHLQNVEAEKQKLRTQVRRLVQENAWL------RDELANTQQKLQSSEQANSQLEEEKK 143 (546)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l------~~~la~~~~~l~~~~~~~~qlee~~~ 143 (546)
+++..+...|.+-..+.+++++.+....-+ +..+...+..+.+++.-+.|.+-+..
T Consensus 12 ~mSelFe~YE~df~~l~~~i~~kl~~i~~~~~~e~rk~~i~~ie~~ldEA~eLl~qMelE~r 73 (102)
T 2qyw_A 12 ASSEHFEKLHEIFRGLLEDLQGVPERLLGTAGTEEKKKLVRDFDEKQQEANETLAEMEEELR 73 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347888888888888888888887765433 24455566666666666666665554
No 427
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=25.46 E-value=1.2e+02 Score=25.75 Aligned_cols=44 Identities=18% Similarity=0.180 Sum_probs=27.3
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHH
Q psy597 82 EAQVMTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKL 128 (546)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~l 128 (546)
.+.++..|..++ =...+.|+.++.+|.++|.-|+.|....+.++
T Consensus 139 p~e~i~elid~~---ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~ql 182 (184)
T 3w03_C 139 PAEVIRELICYC---LDTIAENQAKNEHLQKENERLLRDWNDVQGRF 182 (184)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555443332 23456778888888888877777776655554
No 428
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=25.28 E-value=1.5e+02 Score=21.20 Aligned_cols=35 Identities=20% Similarity=0.247 Sum_probs=22.5
Q ss_pred cCHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhh
Q psy597 80 LNEAQVMTALAGHLQNVEAEKQKLRTQVRRLVQEN 114 (546)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (546)
++-+.++..-..|+..++.+.+.|+.++..|....
T Consensus 39 ~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~ 73 (82)
T 1am9_A 39 LNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAV 73 (82)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666777777777777666666665544
No 429
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=24.89 E-value=2.4e+02 Score=21.77 Aligned_cols=35 Identities=23% Similarity=0.124 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh
Q psy597 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKT 326 (546)
Q Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 326 (546)
.+..+...|.-.-..|+|++|+.+|..+++.+...
T Consensus 17 kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~a 51 (117)
T 2cpt_A 17 KAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHV 51 (117)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence 34455666777778899999999999999987654
No 430
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=24.23 E-value=84 Score=31.15 Aligned_cols=41 Identities=17% Similarity=0.057 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCC
Q psy597 394 EEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGK 434 (546)
Q Consensus 394 ~eA~~~~~~al~~~~~~~~~~~~~~~~~~~~La~~y~~~g~ 434 (546)
+.|+.+|++|++.+++....+++.....+.+++..|...|+
T Consensus 449 ~kAi~~Y~~Ai~~L~k~~~tdd~~~v~~~~~~ak~yE~aGD 489 (526)
T 2wb7_A 449 QGAIDEYKAAINDLQKAAQQDDYQMFLNYLNAAKKHEMAGD 489 (526)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHhhhhhhccH
Confidence 56777888888888877777888888888888876555444
No 431
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=24.23 E-value=1.9e+02 Score=28.13 Aligned_cols=39 Identities=23% Similarity=0.292 Sum_probs=28.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHH
Q psy597 94 QNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSSE 132 (546)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~ 132 (546)
..++.|...|+.++..|.+++.++..++..+.+++.+.+
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 44 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSN 44 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777777777777777777776665433
No 432
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=24.14 E-value=1.3e+02 Score=22.18 Aligned_cols=67 Identities=16% Similarity=0.019 Sum_probs=43.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHHHHHHH
Q psy597 220 NLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNIL 299 (546)
Q Consensus 220 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l 299 (546)
..|..++..|+|=+|-+.++......+... .....+-+....
T Consensus 6 ~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~--------------------------------------~~~~qGLIq~Av 47 (94)
T 2cwy_A 6 EEVLGLWRAGRYYEVHEVLEPYWLKATGEE--------------------------------------RRLLQGVILLAA 47 (94)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCHHH--------------------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCCCch--------------------------------------HHHHHHHHHHHH
Confidence 356677888999999888888776321000 111233344445
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHHh
Q psy597 300 ALVYRDQNKYKEAANLLNDALTIREKT 326 (546)
Q Consensus 300 a~~~~~~g~~~~A~~~~~~al~~~~~~ 326 (546)
|..+...|+. |...+.+++......
T Consensus 48 a~~h~~~gn~--a~~ll~~a~~~L~~~ 72 (94)
T 2cwy_A 48 ALHQRRLGRP--GLRNLRKAEARLEGL 72 (94)
T ss_dssp HHHHHHTTCC--CHHHHHHHHHHHTTC
T ss_pred HHHHHHcCcH--HHHHHHHHHHHHHhC
Confidence 5666677887 999999999876554
No 433
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=24.13 E-value=2.8e+02 Score=22.18 Aligned_cols=17 Identities=6% Similarity=0.098 Sum_probs=6.4
Q ss_pred HHhhhhhHHHHHHHHHH
Q psy597 89 LAGHLQNVEAEKQKLRT 105 (546)
Q Consensus 89 ~~~~~~~~~~~~~~~~~ 105 (546)
|..++..++.+.+.|+.
T Consensus 86 L~~~~~~l~~~i~~L~~ 102 (142)
T 3gp4_A 86 LKKQRIELKNRIDVMQE 102 (142)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 434
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=23.83 E-value=1e+02 Score=17.90 Aligned_cols=21 Identities=19% Similarity=0.332 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHhhhhcH
Q psy597 98 AEKQKLRTQVRRLVQENAWLR 118 (546)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~l~ 118 (546)
...+..+.+|..|...|.-|.
T Consensus 7 rKn~a~qqDIddlkrQN~~Le 27 (34)
T 1a93_B 7 RKNDTHQQDIDDLKRQNALLE 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhHhhHHHHHHHHHHHH
Confidence 334444444444444444333
No 435
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=23.63 E-value=1.9e+02 Score=20.23 Aligned_cols=40 Identities=25% Similarity=0.413 Sum_probs=26.0
Q ss_pred hHHHHHHHHhhHHHHHcCcCHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q psy597 62 EEEKRNMVKNSLEIIELGLNEAQVMTALAGHLQNVEAEKQKLRTQVRRL 110 (546)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (546)
.+||.+.+..+|+.+.. -++..|...++-.+||+.-|..|
T Consensus 5 lEEKv~~LE~sld~LQT---------rfARLLaEy~ssQ~KLKqRit~L 44 (74)
T 3swf_A 5 LEEKVTRMESSVDLLQT---------RFARILAEYESMQQKLKQRLTKV 44 (74)
T ss_dssp HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999888743 35555555666666665444433
No 436
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=23.49 E-value=1.5e+02 Score=19.06 Aligned_cols=28 Identities=18% Similarity=0.190 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHhhhhcHHHHHHHH
Q psy597 98 AEKQKLRTQVRRLVQENAWLRDELANTQ 125 (546)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~l~~~la~~~ 125 (546)
++.+.|-++..+|.....-.|++|..+.
T Consensus 16 ~~l~~L~~rN~rL~~~L~~AR~el~~Lk 43 (51)
T 3m91_A 16 ARIDSLAARNSKLMETLKEARQQLLALR 43 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444333344443333
No 437
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=23.37 E-value=1.8e+02 Score=23.58 Aligned_cols=33 Identities=21% Similarity=0.184 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy597 332 AAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 364 (546)
Q Consensus 332 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 364 (546)
+..+..+..+|.+|.+.|+..+|.+++.+|-+.
T Consensus 122 ~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 122 EVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 334678899999999999999999999998765
No 438
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=23.18 E-value=1.3e+02 Score=34.10 Aligned_cols=21 Identities=19% Similarity=0.237 Sum_probs=8.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhh
Q psy597 94 QNVEAEKQKLRTQVRRLVQEN 114 (546)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~ 114 (546)
..++.++++++.++..+..+.
T Consensus 916 ~~l~~~~~~Le~~l~ele~el 936 (1184)
T 1i84_S 916 VRLAAKKQELEEILHEMEARI 936 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444443333
No 439
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=22.83 E-value=5.2e+02 Score=24.96 Aligned_cols=26 Identities=4% Similarity=0.046 Sum_probs=14.6
Q ss_pred hhhHHHHHHHHhHhhhHHHHHhhhhh
Q psy597 30 NTKTVQQGLEALKNEHTSILNSLSET 55 (546)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (546)
.++.+++-|+.+.++-..++..++..
T Consensus 42 ~LE~~l~elsn~ts~v~~Lvk~iq~~ 67 (409)
T 1m1j_C 42 EIEGLLQQATNSTGSIEYLIQHIKTI 67 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455555566666666666665554
No 440
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=22.64 E-value=1.5e+02 Score=18.64 Aligned_cols=14 Identities=36% Similarity=0.501 Sum_probs=8.6
Q ss_pred HHHHHHHHhhHHHH
Q psy597 63 EEKRNMVKNSLEII 76 (546)
Q Consensus 63 ~~~~~~~~~~~~~~ 76 (546)
+||.+.+..+||.+
T Consensus 4 Eekv~~Le~~ld~L 17 (46)
T 3swy_A 4 EEKVEQLGSSLDTL 17 (46)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 56666666666655
No 441
>2r17_C Vacuolar protein sorting-associated protein 35; protein transport, membrane, phosphorylation; 2.80A {Homo sapiens}
Probab=22.48 E-value=4.6e+02 Score=24.11 Aligned_cols=152 Identities=15% Similarity=0.155 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHhhc---HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHh
Q psy597 294 TMLNILALVYRDQNK---YKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKY--KEAEPLCKRALEIREKV 368 (546)
Q Consensus 294 ~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~g~~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~ 368 (546)
..+..-|.+--..|- -+-|-+.|.+|+.+++.... ++.....+...+...+.....+ +.-..+..++.....+.
T Consensus 100 rL~Lq~A~~ad~~~~~~~e~iaYEFf~qAf~iYEe~Is-dSk~Q~~al~~ii~tL~~~~~f~~enye~L~tk~t~~askL 178 (298)
T 2r17_C 100 RLFLQGALAAGEIGFENHETVAYEFMSQAFSLYEDEIS-DSKAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAASKL 178 (298)
T ss_dssp HHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCccchhHHHHHHHHHHHHHHHhhcc-chHHHHHHHHHHHHHHHHccCCCHhhHHHHHHHHHHHHHhc
Confidence 333333444444444 56778899999999988543 3444455555555555565554 22222333333333333
Q ss_pred cCCCChHHHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH---HHHHHHHHHcCCH
Q psy597 369 LGKEHPDVAKQLNNLALLCQN----------QSKYEEVERYYQRALEIYELKLGPDDSNVAKTK---NNLASCYLKQGKY 435 (546)
Q Consensus 369 ~~~~~~~~~~~~~~la~~~~~----------~g~~~eA~~~~~~al~~~~~~~~~~~~~~~~~~---~~La~~y~~~g~~ 435 (546)
. ..|+.+.+.+.-+.+++. ..+-+..++++++++++...... .......+ .+.-..|+..|+.
T Consensus 179 L--KK~dQcraV~~cshLfW~~~~~~~~~~~~rd~krVleCLqkaLkiA~~~~d--~~~~v~LfveILn~ylyff~~g~~ 254 (298)
T 2r17_C 179 L--KKPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCMD--PSLQVQLFIEILNRYIYFYEKEND 254 (298)
T ss_dssp S--SHHHHHHHHHHTHHHHHTCBCTTTTTCBCCCHHHHHHHHHHHHHHHHHSCC--HHHHHHHHHHHHHHHHHHHTTTCT
T ss_pred c--CcHHHHHHHHHHHHHhcCCCccccchhhccchHHHHHHHHHHHHHHHHHhC--hhhHHHHHHHHHHHHHhhhhCCCC
Confidence 2 237788888888888874 24778999999999999877632 22222222 2333445566665
Q ss_pred HHHHHHHHHHHHhhh
Q psy597 436 KEAEILYKQVLTRAH 450 (546)
Q Consensus 436 ~eA~~~~~~al~~~~ 450 (546)
.-..+++...+++..
T Consensus 255 ~Vt~~~in~LI~lI~ 269 (298)
T 2r17_C 255 AVTIQVLNQLIQKIR 269 (298)
T ss_dssp TSCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHH
Confidence 545555555555544
No 442
>3fxd_A Protein ICMQ; helix bundle, helix-turn-helix, unknown function; 2.10A {Legionella pneumophila} PDB: 3fxe_A
Probab=22.40 E-value=43 Score=21.96 Aligned_cols=33 Identities=27% Similarity=0.418 Sum_probs=21.1
Q ss_pred hHHHHHhhhhhccCCCchHHHHHH---HHhhHHHHHcC
Q psy597 45 HTSILNSLSETQHGGPVEEEKRNM---VKNSLEIIELG 79 (546)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 79 (546)
...||..|.+.+..+| +||++. |-++|..|..+
T Consensus 10 ~~aILkaLdeaIe~GP--We~SNFLRvIGKnL~eIRd~ 45 (57)
T 3fxd_A 10 KETILKALNDAIEKGP--WDKSNFLRVIGKKLIAIRDR 45 (57)
T ss_dssp HHHHHHHHHHHHHHSC--TTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC--chHHHHHHHHHHhHHHHHHH
Confidence 4567778877764433 677665 44677777654
No 443
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=22.36 E-value=3.3e+02 Score=22.43 Aligned_cols=76 Identities=9% Similarity=-0.003 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCchhHHHhhHHHHHhhhhhhHHHHHHHHHHHHhccCCCCChhHHH
Q psy597 215 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVAT 294 (546)
Q Consensus 215 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 294 (546)
..--+..|..++..|+|=+|-+.++.+....+... . ......+-
T Consensus 32 ~~~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~---~---------------------------------er~~lqGL 75 (161)
T 2ijq_A 32 LRRAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGN---T---------------------------------ESKFLHGM 75 (161)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSS---H---------------------------------HHHHHHHH
T ss_pred ccHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCc---h---------------------------------HHHHHHHH
Confidence 33445677788888999999988887765211000 0 00112233
Q ss_pred HH-HHHHHHHHHhhcHHHHHHHHHHHHHHHHHh
Q psy597 295 ML-NILALVYRDQNKYKEAANLLNDALTIREKT 326 (546)
Q Consensus 295 ~~-~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 326 (546)
+. ...|..+...|+..-|...+.+++......
T Consensus 76 IQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~~~ 108 (161)
T 2ijq_A 76 VQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRGV 108 (161)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 33 445666777899999999999999876543
No 444
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=22.32 E-value=2.2e+02 Score=20.50 Aligned_cols=35 Identities=26% Similarity=0.294 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q psy597 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 369 (546)
Q Consensus 335 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 369 (546)
+..+...|.-.-..|+|++|+.+|..+++.+....
T Consensus 16 A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~al 50 (86)
T 4a5x_A 16 AATVLKRAVELDSESRYPQALVCYQEGIDLLLQVL 50 (86)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 33445556666788999999999999999875543
No 445
>2a9u_A Ubiquitin carboxyl-terminal hydrolase 8; coil-COIL, protease, SH3-binding, thiol protease, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: a.118.23.1
Probab=22.11 E-value=2.5e+02 Score=22.69 Aligned_cols=42 Identities=17% Similarity=0.134 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Q psy597 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAK 378 (546)
Q Consensus 335 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 378 (546)
+..+...|.+|...|+.+.|--+|-+-+.+..++ +.||+.-.
T Consensus 42 a~~L~r~A~~y~~EGd~E~AYilymRy~~L~~kI--pkHpdyk~ 83 (144)
T 2a9u_A 42 ALKIFKTAEECRLDRDEERAYVLYMKYVTVYNLI--KKRPDFKQ 83 (144)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TTSHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH--hcCcchhh
Confidence 4456677899999999999999999999988766 66776543
No 446
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=22.09 E-value=3.9e+02 Score=30.19 Aligned_cols=17 Identities=18% Similarity=0.223 Sum_probs=6.7
Q ss_pred hhhhhHHHHHHHHHHHH
Q psy597 91 GHLQNVEAEKQKLRTQV 107 (546)
Q Consensus 91 ~~~~~~~~~~~~~~~~~ 107 (546)
..+..++.++.+++.++
T Consensus 885 ~~l~~Le~e~~~l~~~L 901 (1184)
T 1i84_S 885 QKHTQLCEEKNLLQEKL 901 (1184)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333444444444333
No 447
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=21.83 E-value=2.4e+02 Score=20.55 Aligned_cols=53 Identities=25% Similarity=0.272 Sum_probs=30.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q psy597 93 LQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSSEQANSQLEEEKKHL 145 (546)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~~~~~qlee~~~~l 145 (546)
+...+..+..|..+...|.++-.-|..++++...+.......-.+++..++.+
T Consensus 30 l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el 82 (89)
T 3bas_A 30 LAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARL 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555556666666666666666666555543
No 448
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=21.57 E-value=3.3e+02 Score=22.16 Aligned_cols=58 Identities=24% Similarity=0.244 Sum_probs=41.3
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy597 86 MTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSSEQANSQLEEEKK 143 (546)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~~~~~qlee~~~ 143 (546)
...|..+...+++|...=+.-++-|..-...+...++....++.+...-+.....-++
T Consensus 81 ~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkk 138 (152)
T 4fla_A 81 CLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRK 138 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3448888888888887777777777777777777777777777666666655544444
No 449
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=21.56 E-value=5.3e+02 Score=25.65 Aligned_cols=41 Identities=17% Similarity=0.097 Sum_probs=19.3
Q ss_pred HHHHhhhhcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy597 109 RLVQENAWLRDELANTQQKLQSSEQANSQLEEEKKHLEFMS 149 (546)
Q Consensus 109 ~~~~~~~~l~~~la~~~~~l~~~~~~~~qlee~~~~l~~~~ 149 (546)
.|.+...-|+.+|.+.-++++.++..|..+-..++.|+..-
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445554444555555555554444444444333
No 450
>1k1f_A Breakpoint cluster region protein; oligomerization, coiled coil, BCR-ABL kinase, transferase; 2.20A {Homo sapiens} SCOP: a.147.1.1
Probab=21.43 E-value=1.4e+02 Score=20.20 Aligned_cols=37 Identities=27% Similarity=0.316 Sum_probs=23.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHH
Q psy597 92 HLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKL 128 (546)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~l 128 (546)
.+..+|.|..+-++-||+|-++-.-=|.-+-.+|.-|
T Consensus 27 ~vgdiEqeLe~Ck~sIrrLE~evn~ErFrmIYLQTlL 63 (72)
T 1k1f_A 27 SVGDIEQELERAKASIRRLEQEVNQERFRMIYLQTLL 63 (72)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3566777888888889988888654344443334333
No 451
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.36 E-value=2.1e+02 Score=22.09 Aligned_cols=28 Identities=21% Similarity=0.144 Sum_probs=21.2
Q ss_pred HcCCHHHHHHHHHHHHHHhhhhccCCCC
Q psy597 511 KQGKYKEAEILYKQVLTRAHEREFGACD 538 (546)
Q Consensus 511 ~~g~~~~A~~~~~~al~~~~~~~~~~~~ 538 (546)
..|+.+.|+.+|++.+.......-.++.
T Consensus 34 E~g~k~~Al~lYk~GI~eLe~Gl~I~~~ 61 (116)
T 2dl1_A 34 ELGQKEEAKNYYKQGIGHLLRGISISSK 61 (116)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred hcCCHHHHHHHHHHHHHHHHHhcccccc
Confidence 3589999999999998887666555543
No 452
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=21.20 E-value=2e+02 Score=20.85 Aligned_cols=43 Identities=19% Similarity=0.187 Sum_probs=26.3
Q ss_pred HHHHHHHHhhHHHHHcCcCHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhh
Q psy597 63 EEKRNMVKNSLEIIELGLNEAQVMTALAGHLQNVEAEKQKLRTQVRRLVQENA 115 (546)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (546)
.-|..+|.+..+=|.. |-.....++.++..|+.+...|.+...
T Consensus 41 ~sK~~iL~~A~~YI~~----------L~~~~~~l~~~~~~L~~~n~~L~~rl~ 83 (88)
T 1nkp_A 41 APKVVILKKATAYILS----------VQAEEQKLISEEDLLRKRREQLKHKLE 83 (88)
T ss_dssp CCHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688899998887743 444445555555555555555555443
No 453
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=21.17 E-value=3e+02 Score=21.60 Aligned_cols=18 Identities=33% Similarity=0.374 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHhhh
Q psy597 120 ELANTQQKLQSSEQANSQ 137 (546)
Q Consensus 120 ~la~~~~~l~~~~~~~~q 137 (546)
++...+..+...+..+.+
T Consensus 78 ~l~~~q~~i~~lE~eL~~ 95 (131)
T 3tnu_A 78 QLAQIQEMIGSVEEQLAQ 95 (131)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 454
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.15 E-value=2.9e+02 Score=21.33 Aligned_cols=28 Identities=18% Similarity=0.246 Sum_probs=17.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy597 383 LALLCQNQSKYEEVERYYQRALEIYELK 410 (546)
Q Consensus 383 la~~~~~~g~~~eA~~~~~~al~~~~~~ 410 (546)
-|.-.-..|+.+.|+.+|++.+..+.+-
T Consensus 28 ~AL~~DE~g~k~~Al~lYk~GI~eLe~G 55 (116)
T 2dl1_A 28 KGLNTDELGQKEEAKNYYKQGIGHLLRG 55 (116)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhcCCHHHHHHHHHHHHHHHHHh
Confidence 3333334477778888887777766554
No 455
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=21.15 E-value=2e+02 Score=21.85 Aligned_cols=37 Identities=16% Similarity=0.120 Sum_probs=30.9
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 211 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEK 247 (546)
Q Consensus 211 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 247 (546)
+..+++....-|....+.|+|++|...++++-+.+..
T Consensus 16 ~aG~ArS~~~eAl~~Ak~g~fe~A~~~l~eA~~~l~~ 52 (105)
T 2e2a_A 16 YAGDARSKLLEALKAAENGDFAKADSLVVEAGSCIAE 52 (105)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 3567888899999999999999999999998775443
No 456
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=21.00 E-value=1.9e+02 Score=21.53 Aligned_cols=25 Identities=28% Similarity=0.279 Sum_probs=15.2
Q ss_pred hhHHHHHHHHhHhhhHHHHHhhhhh
Q psy597 31 TKTVQQGLEALKNEHTSILNSLSET 55 (546)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (546)
..+-++.|+.=.+||...+..|...
T Consensus 20 l~~q~~~l~~~~~e~~~~~~EL~~l 44 (107)
T 1fxk_A 20 ISVQKQTVEMQINETQKALEELSRA 44 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3444555666666777777776553
No 457
>1y4c_A Maltose binding protein fused with designed helical protein; de novo designed helical protein, maltose binding protein fusion, de novo protein; HET: GLC; 1.90A {Escherichia coli}
Probab=20.91 E-value=2.5e+02 Score=28.00 Aligned_cols=108 Identities=25% Similarity=0.330 Sum_probs=52.2
Q ss_pred HHhhhhhHHHHHHHHhHhhhHHHHHhhhhhccCCCchHHHHHHHHhhHHHHHcCcCHHHHHHHHHhhhhhHHHHHHHHHH
Q psy597 26 EIMTNTKTVQQGLEALKNEHTSILNSLSETQHGGPVEEEKRNMVKNSLEIIELGLNEAQVMTALAGHLQNVEAEKQKLRT 105 (546)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (546)
+++.+..++.+.|+.+..+-+.++..-.... .--++.+ .|-|.+.+.+.|||--..-+..|..--.-..+|+.
T Consensus 349 ~vl~G~~tpeeAl~~~~~~~~~~l~~~~~~~--~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (494)
T 1y4c_A 349 NAASGRQTVDEALKDAQTNSSSNNNNNNNNN--NLGIEGR-----SSEELLKIALQEAQKTLQQAQELAKKGGGEEQLKR 421 (494)
T ss_dssp HHHHTSSCHHHHHHHHHHHHCC------------CHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHhccCCcc--ccCCCCc-----cHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHH
Confidence 4556666777777777777666665544332 1122333 26666666676776554444333221111122222
Q ss_pred HHHHHHHhhhhcHHHHHH--------HHHHHHHHHHHhhhHHHH
Q psy597 106 QVRRLVQENAWLRDELAN--------TQQKLQSSEQANSQLEEE 141 (546)
Q Consensus 106 ~~~~~~~~~~~l~~~la~--------~~~~l~~~~~~~~qlee~ 141 (546)
-++| ...|-|--.||+. +.+.|+.+.+.+.|..|.
T Consensus 422 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (494)
T 1y4c_A 422 ALKR-ADRNLWAAQELAKKGGGGEELLKQALQQAQQLLRQAQEL 464 (494)
T ss_dssp HHHH-HHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHh-hhhhhHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 3446688888764 456666666666555443
No 458
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=20.89 E-value=1.3e+02 Score=17.21 Aligned_cols=26 Identities=12% Similarity=0.155 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHhhhhcHHHHHHHHHH
Q psy597 102 KLRTQVRRLVQENAWLRDELANTQQK 127 (546)
Q Consensus 102 ~~~~~~~~~~~~~~~l~~~la~~~~~ 127 (546)
+|.+.|..|-.+|..|-+|++-++.-
T Consensus 4 QLEdKVEell~~~~~le~EV~Rl~~l 29 (33)
T 2wq1_A 4 QLEDKIEENTSKIYHNTNEIARNTKL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 45666777777776666666555443
No 459
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=20.84 E-value=2e+02 Score=21.68 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy597 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEK 247 (546)
Q Consensus 212 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 247 (546)
..+++....-+....+.|+|++|...++++-+.+..
T Consensus 15 aG~Ars~~~eAl~~Ak~g~fe~A~~~l~eA~~~l~~ 50 (103)
T 1wcr_A 15 SGQARSLAYAALKQAKQGDFAAAKAMMDQSRMALNE 50 (103)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 567888899999999999999999999998775443
No 460
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=20.30 E-value=3e+02 Score=21.13 Aligned_cols=45 Identities=27% Similarity=0.391 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q psy597 94 QNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSSEQANSQLEEEKKHL 145 (546)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~l~~~~~~~~qlee~~~~l 145 (546)
.+++.++.+-+.+|..|. +|+..+-++|+.+...+.++-.+...+
T Consensus 60 ~SL~~ekaq~q~~vqeLq-------gEI~~Lnq~Lq~a~ae~erlr~~~~~~ 104 (121)
T 3mq7_A 60 ASLDAEKAQGQKKVEELE-------GEITTLNHKLQDASAEVERLRRENQVL 104 (121)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhchhh
Confidence 344444433344444444 455566667777777777766655443
No 461
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=20.29 E-value=2.2e+02 Score=19.58 Aligned_cols=41 Identities=22% Similarity=0.312 Sum_probs=31.2
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhcHHHHHHH
Q psy597 84 QVMTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDELANT 124 (546)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~ 124 (546)
.++..|-.+|..-+.|..+|+.-+.--.++-.-|.||+-.+
T Consensus 18 ~~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiisl 58 (75)
T 3a7o_A 18 NTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISG 58 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHh
Confidence 36677888888888888888887777777777777777544
No 462
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=20.21 E-value=81 Score=28.13 Aligned_cols=41 Identities=22% Similarity=0.312 Sum_probs=0.0
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHH
Q psy597 86 MTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQ 126 (546)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~ 126 (546)
+..|...+..+.+...+|...++++.++...|+.|+..+++
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 463
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Probab=20.18 E-value=5.7e+02 Score=24.81 Aligned_cols=29 Identities=21% Similarity=0.166 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy597 335 AATLNNLAVLYGKRGKYKEAEPLCKRALE 363 (546)
Q Consensus 335 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 363 (546)
...+..|+..+...|+|.+|.-++..+..
T Consensus 11 ~~wl~~La~~h~~~~n~~EAa~cl~~~aa 39 (428)
T 2wm9_A 11 KTWLDSMARIHVKNGDLSEAAMCYVHVTA 39 (428)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45567899999999999999988875544
No 464
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=20.11 E-value=1.5e+02 Score=22.53 Aligned_cols=38 Identities=13% Similarity=0.198 Sum_probs=21.8
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHhhhhcHHHHHHHHHH
Q psy597 90 AGHLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQK 127 (546)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~ 127 (546)
+..+..+.+|..+|..+-+.|-+-..|++..|.++...
T Consensus 5 ~~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lted 42 (106)
T 2aze_B 5 GGRLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSED 42 (106)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34455666666666666666666666666555555443
Done!