RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy597
(546 letters)
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium
(SGC), motor PR transport protein; 2.80A {Homo sapiens}
Length = 311
Score = 349 bits (898), Expect = e-118
Identities = 217/324 (66%), Positives = 238/324 (73%), Gaps = 43/324 (13%)
Query: 208 GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRK 267
GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSG
Sbjct: 20 GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSG----------------- 62
Query: 268 ESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTL 327
HDHPDVATMLNILALVYRDQNKYK+AANLLNDAL IREKTL
Sbjct: 63 -------------------HDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103
Query: 328 GENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLC 387
G++H AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK+HPDVAKQLNNLALLC
Sbjct: 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLC 163
Query: 388 QNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 447
QNQ KYEEVE YYQRALEIY+ KLGPDD NVAKTKNNLASCYLKQGK+K+AE LYK++LT
Sbjct: 164 QNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223
Query: 448 RAHEREFGACDGDNKPIWQD-----RQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTK 502
RAHEREFG+ D +NKPIW K K K+ + + + D V T
Sbjct: 224 RAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG--WYKACKVDSPTVTTTL 281
Query: 503 NNLASCYLKQGKYKEAEILYKQVL 526
NL + Y +QGK++ AE L + +
Sbjct: 282 KNLGALYRRQGKFEAAETLEEAAM 305
Score = 220 bits (563), Expect = 1e-67
Identities = 75/303 (24%), Positives = 111/303 (36%), Gaps = 77/303 (25%)
Query: 208 GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEK----------TS-------- 249
G++ P L+ L + Y Q +Y+ A L AL EK +
Sbjct: 62 GHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLY 121
Query: 250 ---GKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQ 306
GKY+ AE L AL R++ G DHPDVA LN LAL+ ++Q
Sbjct: 122 GKRGKYKEAEPLCKRALEIREKVL---------------GKDHPDVAKQLNNLALLCQNQ 166
Query: 307 NKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI-R 365
KY+E AL I + LG + VA T NNLA Y K+GK+K+AE L K L
Sbjct: 167 GKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAH 226
Query: 366 EKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNL 425
E+ G + + + + K ++ + + + D V T NL
Sbjct: 227 EREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG--WYKACKVDSPTVTTTLKNL 284
Query: 426 ASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALE 485
+ Y +QGK++ AE + A+
Sbjct: 285 GALYRRQGKFEAAE--------------------------------------TLEEAAMR 306
Query: 486 IYE 488
+
Sbjct: 307 SRK 309
Score = 217 bits (555), Expect = 1e-66
Identities = 80/211 (37%), Positives = 102/211 (48%), Gaps = 38/211 (18%)
Query: 316 LNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPD 375
+ + + G A TL+NL + Y +G+Y+ A PLCK+ALE EK G +HPD
Sbjct: 8 SSGRENLYFQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPD 67
Query: 376 VAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKY 435
VA LN LAL+ ++Q+KY++ AL I E LG D VA T NNLA Y K+GKY
Sbjct: 68 VATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKY 127
Query: 436 KEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDD 495
KEA E +RALEI E LG D
Sbjct: 128 KEA--------------------------------------EPLCKRALEIREKVLGKDH 149
Query: 496 SNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
+VAK NNLA QGKY+E E Y++ L
Sbjct: 150 PDVAKQLNNLALLCQNQGKYEEVEYYYQRAL 180
Score = 129 bits (327), Expect = 6e-34
Identities = 37/177 (20%), Positives = 62/177 (35%), Gaps = 37/177 (20%)
Query: 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKT---------------------SG 250
P + L+NL + +QG+YE ++ALE + G
Sbjct: 150 PDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQG 209
Query: 251 KYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYK 310
K++ AETL L E + G + + + K K
Sbjct: 210 KFKQAETLYKEILTRAHE-----------REFG---SVDDENKPIWMHAEEREECKGKQK 255
Query: 311 EAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367
+ + K + V TL NL LY ++GK++ AE L + A+ R++
Sbjct: 256 DGTSFG--EYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics,
structural genomics conso SGC, microtubule, motor
protein, phosphoprotein; 2.70A {Homo sapiens} PDB:
3ceq_A
Length = 283
Score = 340 bits (874), Expect = e-114
Identities = 187/317 (58%), Positives = 212/317 (66%), Gaps = 43/317 (13%)
Query: 215 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVK 274
+ + H+ + AVPLCKQALEDLEKTSG
Sbjct: 1 MGSSHHHHHHSSGLVPRGSAVPLCKQALEDLEKTSG------------------------ 36
Query: 275 QAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAV 334
HDHPDVATMLNILALVYRDQNKYKEAA+LLNDAL IREKTLG++H AV
Sbjct: 37 ------------HDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAV 84
Query: 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYE 394
AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK HPDVAKQLNNLALLCQNQ K E
Sbjct: 85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAE 144
Query: 395 EVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREF 454
EVE YY+RALEIY +LGPDD NVAKTKNNLASCYLKQGKY++AE LYK++LTRAHE+EF
Sbjct: 145 EVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEF 204
Query: 455 GACDGDNKPIWQD-----RQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCY 509
G+ +GDNKPIW K+K ++ Y + + D V T +L + Y
Sbjct: 205 GSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGS--WYKACKVDSPTVNTTLRSLGALY 262
Query: 510 LKQGKYKEAEILYKQVL 526
+QGK + A L
Sbjct: 263 RRQGKLEAAHTLEDCAS 279
Score = 227 bits (580), Expect = 1e-70
Identities = 72/236 (30%), Positives = 98/236 (41%), Gaps = 39/236 (16%)
Query: 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYD 271
PA TL+NL + Y +G+Y+ A PLCK+ALE EK GK
Sbjct: 82 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK-------------------- 121
Query: 272 IVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENH 331
HPDVA LN LAL+ ++Q K +E AL I LG +
Sbjct: 122 ----------------FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDD 165
Query: 332 AAVAATLNNLAVLYGKRGKYKEAEPLCKRAL-EIREKVLGKEHPDVAKQLNNLALLCQNQ 390
VA T NNLA Y K+GKY++AE L K L EK G + D + +++
Sbjct: 166 PNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESK 225
Query: 391 SKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 446
K + Y + + D V T +L + Y +QGK + A L
Sbjct: 226 DKRRDSAPYGEYGS--WYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCAS 279
Score = 130 bits (329), Expect = 2e-34
Identities = 36/176 (20%), Positives = 57/176 (32%), Gaps = 37/176 (21%)
Query: 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKT---------------------SG 250
P + L+NL + +QG+ E ++ALE G
Sbjct: 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQG 183
Query: 251 KYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYK 310
KY+ AETL L E G + D + ++K +
Sbjct: 184 KYQDAETLYKEILTRAHEKE--------------FGSVNGDNKPIWMHAEEREESKDKRR 229
Query: 311 EAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE 366
++A K + V TL +L LY ++GK + A L A R+
Sbjct: 230 DSAPYGEYGS--WYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNRK 283
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat,
protein-protein interaction, protein-binding, PR
binding; 2.30A {Mus musculus}
Length = 338
Score = 165 bits (421), Expect = 8e-47
Identities = 51/343 (14%), Positives = 101/343 (29%), Gaps = 88/343 (25%)
Query: 216 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLE------------DCAL 263
L Y Y A+ L + A+ D A+
Sbjct: 44 AIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAI 103
Query: 264 RSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQ----------------- 306
+ DI ++ +D A L L VY +
Sbjct: 104 VCCQRHLDISREL----------NDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPE 153
Query: 307 ---NKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALE 363
N + A +L + L++ + AA NL + G +++A ++ L
Sbjct: 154 DVRNALQAAVDLYEENLSLVTAL--GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL 211
Query: 364 IREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKN 423
I ++ + + +NL ++E YY++ L + +L D + A++
Sbjct: 212 IAKEF--GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLAR-QLK-DRAVEAQSCY 267
Query: 424 NLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRA 483
+L + Y Y++A Y+ +
Sbjct: 268 SLGNTYTLLQDYEKAI--------------------------------------DYHLKH 289
Query: 484 LEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
L I + +L D + +L + Y G + +A ++ L
Sbjct: 290 LAIAQ-ELK-DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330
Score = 160 bits (406), Expect = 1e-44
Identities = 49/334 (14%), Positives = 95/334 (28%), Gaps = 106/334 (31%)
Query: 213 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDI 272
A L + G V + A++
Sbjct: 3 ASCLELALEGERLCKSGDCRAGVSFFEAAVQ----------------------------- 33
Query: 273 VKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHA 332
G D ++ + + L Y + Y +A + LT+ +
Sbjct: 34 -----------VGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--GDQL 80
Query: 333 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSK 392
A NL G + EA C+R L+I ++ + A+ L NL + + K
Sbjct: 81 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL--NDKVGEARALYNLGNVYHAKGK 138
Query: 393 --------------------YEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ 432
+ Y+ L + LG D + + NL + +
Sbjct: 139 SFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVT-ALG-DRAAQGRAFGNLGNTHYLL 196
Query: 433 GKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLG 492
G +++A +++ L I + + G
Sbjct: 197 GNFRDA--------------------------------------VIAHEQRLLIAK-EFG 217
Query: 493 PDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
D + + +NL + Y+ G+++ A YK+ L
Sbjct: 218 -DKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 250
Score = 126 bits (319), Expect = 2e-32
Identities = 36/216 (16%), Positives = 73/216 (33%), Gaps = 28/216 (12%)
Query: 332 AAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQS 391
+A L K G + + A+++ ++ ++ + L
Sbjct: 2 SASCLELALEGERLCKSGDCRAGVSFFEAAVQVGT----EDLKTLSAIYSQLGNAYFYLH 57
Query: 392 KYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL----- 446
Y + Y+ L + +G D AK NL + G + EA + ++ L
Sbjct: 58 DYAKALEYHHHDLTLAR-TIG-DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRE 115
Query: 447 TRAHEREFGACD---------GDNKPIWQDRQKNKA-KNREKYYQRALEIYE------LK 490
E A G + + + ++ Q A+++YE
Sbjct: 116 LNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTA 175
Query: 491 LGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
LG D + + NL + + G +++A I ++Q L
Sbjct: 176 LG-DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 210
Score = 48.0 bits (115), Expect = 4e-06
Identities = 11/112 (9%), Positives = 24/112 (21%), Gaps = 42/112 (37%)
Query: 416 SNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKN 475
S K G +
Sbjct: 2 SASCLELALEGERLCKSGDCRAGV------------------------------------ 25
Query: 476 REKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 527
+++ A+++ D ++ + L + Y Y +A + LT
Sbjct: 26 --SFFEAAVQVGT----EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT 71
Score = 32.2 bits (74), Expect = 0.43
Identities = 4/36 (11%), Positives = 8/36 (22%)
Query: 496 SNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 531
S K G + ++ + E
Sbjct: 2 SASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE 37
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle
orientation, asymmetric CEL divisions; 2.10A {Drosophila
melanogaster}
Length = 411
Score = 167 bits (425), Expect = 1e-46
Identities = 50/341 (14%), Positives = 100/341 (29%), Gaps = 103/341 (30%)
Query: 203 QQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCA 262
QQ + + L + + G V + A++
Sbjct: 36 QQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQ------------------- 76
Query: 263 LRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTI 322
+G D ++ + + L Y Y +A LT+
Sbjct: 77 ---------------------AGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTL 115
Query: 323 REKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNN 382
+ + A + NL G++ EA C+R L + ++ + + L N
Sbjct: 116 AKSM--NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQL--GDRLSEGRALYN 171
Query: 383 LALLCQNQSKY-----------------EEVERYYQRALEIYELKLGPDDSNVAKTKNNL 425
L + + K+ +YQ L++ LG D + NL
Sbjct: 172 LGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMR-DLG-DRGAQGRACGNL 229
Query: 426 ASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALE 485
+ Y G ++ A +++Q L
Sbjct: 230 GNTYYLLGDFQAA--------------------------------------IEHHQERLR 251
Query: 486 IYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
I + G D + + +NL + ++ G++++A YK+ L
Sbjct: 252 IAR-EFG-DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL 290
Score = 161 bits (409), Expect = 2e-44
Identities = 43/254 (16%), Positives = 87/254 (34%), Gaps = 33/254 (12%)
Query: 216 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETL---------------ED 260
++ NL GR++ A C++ L + + L +
Sbjct: 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQR 186
Query: 261 CALRSRKESYDIVKQA--------KVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEA 312
+ + + + +A K+ + LG D L Y ++ A
Sbjct: 187 NPGKFGDDVKEALTRAVEFYQENLKLMRDLG----DRGAQGRACGNLGNTYYLLGDFQAA 242
Query: 313 ANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKE 372
+ L I + + AA +NL + G++++A KR L + ++ E
Sbjct: 243 IEHHQERLRIAREF--GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVEL--GE 298
Query: 373 HPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ 432
A+ +L ++ Y+ R L I + +LG D A+ +L + +
Sbjct: 299 REVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQ-ELG-DRIGEARACWSLGNAHSAI 356
Query: 433 GKYKEAEILYKQVL 446
G ++ A +Q L
Sbjct: 357 GGHERALKYAEQHL 370
Score = 129 bits (326), Expect = 5e-33
Identities = 28/238 (11%), Positives = 65/238 (27%), Gaps = 46/238 (19%)
Query: 296 LNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAE 355
L+ A + ++ + + +++ L G +
Sbjct: 9 LSASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGV 68
Query: 356 PLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDD 415
+ A++ ++ ++ + L Y + +Y++ L + + + D
Sbjct: 69 AFFQAAIQAGT----EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAK-SMN-DR 122
Query: 416 SNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKN 475
AK+ NL + G++ EA
Sbjct: 123 LGEAKSSGNLGNTLKVMGRFDEA------------------------------------- 145
Query: 476 REKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHERE 533
+R L + +LG D + + NL + Y +GK+ K
Sbjct: 146 -AICCERHLTLAR-QLG-DRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALT 200
Score = 122 bits (307), Expect = 2e-30
Identities = 29/191 (15%), Positives = 60/191 (31%), Gaps = 42/191 (21%)
Query: 216 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQ 275
R NL Y G ++ A+ ++ L
Sbjct: 224 RACGNLGNTYYLLGDFQAAIEHHQERLR-------------------------------- 251
Query: 276 AKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVA 335
+A+ G D + L + ++++AA L + + LGE A
Sbjct: 252 --IAREFG----DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVE-LGEREV-EA 303
Query: 336 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEE 395
+ +L Y ++ A R L I +++ + A+ +L +E
Sbjct: 304 QSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL--GDRIGEARACWSLGNAHSAIGGHER 361
Query: 396 VERYYQRALEI 406
+Y ++ L++
Sbjct: 362 ALKYAEQHLQL 372
Score = 101 bits (253), Expect = 2e-23
Identities = 26/193 (13%), Positives = 54/193 (27%), Gaps = 44/193 (22%)
Query: 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYE 394
++L+ A G ++ + +L N
Sbjct: 6 MSSLSASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCR 65
Query: 395 EVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREF 454
++Q A++ D ++ + L + Y G Y +A
Sbjct: 66 AGVAFFQAAIQAGT----EDLRTLSAIYSQLGNAYFYLGDYNKA---------------- 105
Query: 455 GACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGK 514
+Y++ L + + + D AK+ NL + G+
Sbjct: 106 ----------------------MQYHKHDLTLAK-SMN-DRLGEAKSSGNLGNTLKVMGR 141
Query: 515 YKEAEILYKQVLT 527
+ EA I ++ LT
Sbjct: 142 FDEAAICCERHLT 154
Score = 52.3 bits (126), Expect = 2e-07
Identities = 19/124 (15%), Positives = 36/124 (29%), Gaps = 18/124 (14%)
Query: 412 GPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQD---- 467
GP S + + + L G + + + +
Sbjct: 1 GPLGSMSSLSASAENVSSLGLGSGGGGTNSHDGNSQQGSG------SDGGSSMCLELALE 54
Query: 468 --RQKNKAKNRE--KYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYK 523
R N R ++Q A++ D ++ + L + Y G Y +A +K
Sbjct: 55 GERLCNAGDCRAGVAFFQAAIQAGT----EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHK 110
Query: 524 QVLT 527
LT
Sbjct: 111 HDLT 114
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR,
cell polarity, asymmetric CEL division, mitotic spindle
orientation; 2.60A {Homo sapiens}
Length = 406
Score = 165 bits (419), Expect = 8e-46
Identities = 49/342 (14%), Positives = 100/342 (29%), Gaps = 88/342 (25%)
Query: 217 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLE------------DCALR 264
L Y Y A+ L + A+ D A+
Sbjct: 49 IYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIV 108
Query: 265 SRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQ------------------ 306
+ DI ++ +D A L L VY +
Sbjct: 109 CCQRHLDISREL----------NDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEE 158
Query: 307 --NKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 364
+ + A + + L++ + AA NL + G +++A ++ L I
Sbjct: 159 VRDALQAAVDFYEENLSLVTAL--GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 216
Query: 365 REKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNN 424
++ + + +NL ++E YY++ L + +L D + A++ +
Sbjct: 217 AKEF--GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLAR-QLK-DRAVEAQSCYS 272
Query: 425 LASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRAL 484
L + Y Y++A Y+ + L
Sbjct: 273 LGNTYTLLQDYEKA--------------------------------------IDYHLKHL 294
Query: 485 EIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
I + +L D + +L + Y G + +A ++ L
Sbjct: 295 AIAQ-ELN-DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 334
Score = 158 bits (401), Expect = 2e-43
Identities = 40/239 (16%), Positives = 74/239 (30%), Gaps = 28/239 (11%)
Query: 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGK 347
L + + + A+ + E+ ++A + L Y
Sbjct: 4 SMEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGT----EDLKTLSAIYSQLGNAYFY 59
Query: 348 RGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIY 407
Y +A L + + + AK NL + ++E QR L+I
Sbjct: 60 LHDYAKALEYHHHDLTLARTI--GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDIS 117
Query: 408 ELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQD 467
+L D A+ NL + Y +GK R+
Sbjct: 118 R-ELN-DKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRD-------------- 161
Query: 468 RQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
A +Y+ L + LG D + + NL + + G +++A I ++Q L
Sbjct: 162 -ALQAA---VDFYEENLSLVT-ALG-DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 214
Score = 155 bits (395), Expect = 2e-42
Identities = 48/331 (14%), Positives = 95/331 (28%), Gaps = 106/331 (32%)
Query: 216 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQ 275
L + G V + A++
Sbjct: 10 LELALEGERLCKSGDCRAGVSFFEAAVQ-------------------------------- 37
Query: 276 AKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVA 335
G D ++ + + L Y + Y +A + LT+ + A
Sbjct: 38 --------VGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--GDQLGEA 87
Query: 336 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSK--- 392
NL G + EA C+R L+I ++ + A+ L NL + + K
Sbjct: 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISREL--NDKVGEARALYNLGNVYHAKGKSFG 145
Query: 393 -----------------YEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKY 435
+ +Y+ L + LG D + + NL + + G +
Sbjct: 146 CPGPQDVGEFPEEVRDALQAAVDFYEENLSLVT-ALG-DRAAQGRAFGNLGNTHYLLGNF 203
Query: 436 KEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDD 495
++A +++ L I + + G D
Sbjct: 204 RDA--------------------------------------VIAHEQRLLIAK-EFG-DK 223
Query: 496 SNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
+ + +NL + Y+ G+++ A YK+ L
Sbjct: 224 AAERRAYSNLGNAYIFLGEFETASEYYKKTL 254
Score = 144 bits (366), Expect = 2e-38
Identities = 41/318 (12%), Positives = 85/318 (26%), Gaps = 85/318 (26%)
Query: 210 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKES 269
+ + + AV ++ L +
Sbjct: 142 KSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTAL--------------------- 180
Query: 270 YDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGE 329
D L + +++A L I ++
Sbjct: 181 -----------------GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--G 221
Query: 330 NHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQN 389
+ AA +NL Y G+++ A K+ L + ++ K+ A+ +L
Sbjct: 222 DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGNTYTL 279
Query: 390 QSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRA 449
YE+ Y+ + L I + +L D + +L + Y G + +A
Sbjct: 280 LQDYEKAIDYHLKHLAIAQ-ELN-DRIGEGRACWSLGNAYTALGNHDQA----------- 326
Query: 450 HEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCY 509
+ ++ LEI ++G D S + NL+
Sbjct: 327 ---------------------------MHFAEKHLEISR-EVG-DKSGELTARLNLSDLQ 357
Query: 510 LKQGK-YKEAEILYKQVL 526
+ G Y + +
Sbjct: 358 MVLGLSYSTNNSIMSENT 375
Score = 118 bits (299), Expect = 2e-29
Identities = 39/236 (16%), Positives = 67/236 (28%), Gaps = 34/236 (14%)
Query: 216 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLE------------DCAL 263
R NL + G + AV +Q L ++ K + A
Sbjct: 188 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247
Query: 264 RSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIR 323
K++ + +Q D A L Y Y++A + L I
Sbjct: 248 EYYKKTLLLARQL----------KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 297
Query: 324 EKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKE-----HPDVAK 378
++ + +L Y G + +A ++ LEI +V K +++
Sbjct: 298 QEL--NDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSD 355
Query: 379 QLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGK 434
L L + +L KLG S N+ L K
Sbjct: 356 LQMVLGLSYSTNNSIMSENTEIDSSLNGVRPKLGRRHSM-----ENMELMKLTPEK 406
Score = 110 bits (278), Expect = 1e-26
Identities = 31/204 (15%), Positives = 54/204 (26%), Gaps = 46/204 (22%)
Query: 330 NHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQN 389
+ A L K G + + A+++ + + ++ + L
Sbjct: 4 SMEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE----DLKTLSAIYSQLGNAYFY 59
Query: 390 QSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRA 449
Y + Y+ L + +G D AK NL + G + EA
Sbjct: 60 LHDYAKALEYHHHDLTLAR-TIG-DQLGEAKASGNLGNTLKVLGNFDEAI---------- 107
Query: 450 HEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCY 509
QR L+I +L D A+ NL + Y
Sbjct: 108 ----------------------------VCCQRHLDISR-ELN-DKVGEARALYNLGNVY 137
Query: 510 LKQGKYKEAEILYKQVLTRAHERE 533
+GK R+
Sbjct: 138 HAKGKSFGCPGPQDVGEFPEEVRD 161
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, no structural genomics consortium,
NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Length = 203
Score = 146 bits (371), Expect = 3e-41
Identities = 28/228 (12%), Positives = 66/228 (28%), Gaps = 45/228 (19%)
Query: 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGK 347
+ +L VY +++ EA +K+ +H A L+ + ++
Sbjct: 21 HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKS--GDHTAEHRALHQVGMVERM 78
Query: 348 RGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIY 407
G + A E+ L ++ + +A + + + Y+++L
Sbjct: 79 AGNWDAARRCFLEERELLAS-LPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYA 137
Query: 408 ELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQD 467
+ + D +A L ++ EA
Sbjct: 138 Q-QAD-DQVAIACAFRGLGDLAQQEKNLLEA----------------------------- 166
Query: 468 RQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKY 515
++++ RA +I+ +L D V + L +
Sbjct: 167 ---------QQHWLRARDIFA-ELE-DSEAVNELMTRLNGLEHHHHHH 203
Score = 137 bits (347), Expect = 6e-38
Identities = 34/220 (15%), Positives = 65/220 (29%), Gaps = 43/220 (19%)
Query: 216 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQ 275
L YA R++ A + +
Sbjct: 27 GARFMLGYVYAFMDRFDEARASFQALQQ-------------------------------- 54
Query: 276 AKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVA 335
AQ G DH L+ + +V R + A + + L E+ A +
Sbjct: 55 --QAQKSG----DHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLAS-LPEDPLAAS 107
Query: 336 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEE 395
A +A + G A +++L ++ + +A L L Q + E
Sbjct: 108 ANAYEVATVALHFGDLAGARQEYEKSLVYAQQA--DDQVAIACAFRGLGDLAQQEKNLLE 165
Query: 396 VERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKY 435
++++ RA +I+ +L D V + L +
Sbjct: 166 AQQHWLRARDIFA-ELE-DSEAVNELMTRLNGLEHHHHHH 203
Score = 99.3 bits (248), Expect = 3e-24
Identities = 20/179 (11%), Positives = 45/179 (25%), Gaps = 43/179 (24%)
Query: 353 EAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLG 412
EA + + + + L + +++E +Q + + K G
Sbjct: 4 EAHDYALAERQAQALL--AHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQ-KSG 60
Query: 413 PDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNK 472
D + + + + G + A
Sbjct: 61 -DHTAEHRALHQVGMVERMAGNWDAAR--------------------------------- 86
Query: 473 AKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 531
+ + E+ L D + +A+ L G A Y++ L A +
Sbjct: 87 -----RCFLEERELLA-SLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQ 139
>3q15_A PSP28, response regulator aspartate phosphatase H;
tetratricopeptide repeat, 3-helix bundle, phosphorelay
signa transduction, phosphatase; 2.19A {Bacillus
subtilis}
Length = 378
Score = 146 bits (371), Expect = 2e-39
Identities = 56/321 (17%), Positives = 110/321 (34%), Gaps = 24/321 (7%)
Query: 215 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVK 274
+ H L++ Y G+ P + LE +E K L+ +L R K
Sbjct: 58 MCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLT--GLLKYYSLFFRGMYEFDQK 115
Query: 275 QAKVA--------QILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKT 326
+ A + L D + A +A Y + + + AL I +
Sbjct: 116 EYVEAIGYYREAEKELPFVS-DDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNH 174
Query: 327 LGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALL 386
+ +L +A Y Y +A P + ALE+ + + +A L N+A
Sbjct: 175 PLYSIR-TIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI--QNDRFIAISLLNIANS 231
Query: 387 CQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 446
+ ++Q+A ++ K + K L+ K G+ ++A ++ L
Sbjct: 232 YDRSGDDQMAVEHFQKAAKVSREK---VPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGL 288
Query: 447 TRAHEREFGACDGDNKPIWQD-RQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNL 505
R K ++ + K E+ L +E K + + +
Sbjct: 289 DHITARS----HKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN--LHAYIEACARSA 342
Query: 506 ASCYLKQGKYKEAEILYKQVL 526
A+ + +++A Y++VL
Sbjct: 343 AAVFESSCHFEQAAAFYRKVL 363
Score = 126 bits (318), Expect = 3e-32
Identities = 41/321 (12%), Positives = 95/321 (29%), Gaps = 57/321 (17%)
Query: 224 QYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALR---------SRKESYDIVK 274
+ Q A L + +D+++ + R K +
Sbjct: 21 KMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPT 80
Query: 275 QAKVAQILGSGGHDHPDVATMLNIL--ALVYRDQNKYKEAANLLNDALTIREKTLGENHA 332
++ + + + + ++ + DQ +Y EA +A +
Sbjct: 81 VTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFV--SDDI 138
Query: 333 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSK 392
A +A Y + + +AL+I + + L +A +
Sbjct: 139 EKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQN-HPLYSIRTIQSLFVIAGNYDDFKH 197
Query: 393 YEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 452
Y++ + + ALE+ +D +A + N+A+ Y + G + A
Sbjct: 198 YDKALPHLEAALELAMDI--QNDRFIAISLLNIANSYDRSGDDQMAV------------- 242
Query: 453 EFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ 512
+++Q+A ++ K + K L+ K
Sbjct: 243 -------------------------EHFQKAAKVSREK---VPDLLPKVLFGLSWTLCKA 274
Query: 513 GKYKEAEILYKQVLTRAHERE 533
G+ ++A ++ L R
Sbjct: 275 GQTQKAFQFIEEGLDHITARS 295
Score = 69.5 bits (170), Expect = 6e-13
Identities = 25/165 (15%), Positives = 55/165 (33%), Gaps = 6/165 (3%)
Query: 209 YEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKE 268
+L N+ Y G ++AV ++A + + +
Sbjct: 216 QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAG 275
Query: 269 SYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLG 328
Q + H + L VY++ ++ ++D L+ EK
Sbjct: 276 QTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERK----IHDLLSYFEK--K 329
Query: 329 ENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEH 373
HA + A + A ++ +++A ++ L+ +E +L E
Sbjct: 330 NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGEC 374
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell
division, protein binding; 1.10A {Mus musculus}
Length = 164
Score = 138 bits (349), Expect = 1e-38
Identities = 28/159 (17%), Positives = 58/159 (36%), Gaps = 6/159 (3%)
Query: 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGK 347
L + +++A L I ++ + AA +NL Y
Sbjct: 4 SRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERIAYSNLGNAYIF 61
Query: 348 RGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIY 407
G+++ A K+ L + ++ K+ A+ +L YE+ Y+ + L I
Sbjct: 62 LGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 119
Query: 408 ELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 446
+ +L D + +L + Y G + +A ++ L
Sbjct: 120 Q-ELK-DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156
Score = 124 bits (313), Expect = 2e-33
Identities = 31/197 (15%), Positives = 66/197 (33%), Gaps = 44/197 (22%)
Query: 330 NHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQN 389
+ AA NL + G +++A ++ L I ++ + +NL
Sbjct: 4 SRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERIAYSNLGNAYIF 61
Query: 390 QSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRA 449
++E YY++ L + +L D + A++ +L + Y Y++A
Sbjct: 62 LGEFETASEYYKKTLLLAR-QLK-DRAVEAQSCYSLGNTYTLLQDYEKA----------- 108
Query: 450 HEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCY 509
Y+ + L I + +L D + +L + Y
Sbjct: 109 ---------------------------IDYHLKHLAIAQ-ELK-DRIGEGRACWSLGNAY 139
Query: 510 LKQGKYKEAEILYKQVL 526
G + +A ++ L
Sbjct: 140 TALGNHDQAMHFAEKHL 156
Score = 91.8 bits (229), Expect = 6e-22
Identities = 28/165 (16%), Positives = 51/165 (30%), Gaps = 24/165 (14%)
Query: 216 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLE------------DCAL 263
R NL + G + AV +Q L ++ K + A
Sbjct: 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETAS 69
Query: 264 RSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIR 323
K++ + +Q D A L Y Y++A + L I
Sbjct: 70 EYYKKTLLLARQL----------KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 119
Query: 324 EKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 368
++ ++ +L Y G + +A ++ LEI +V
Sbjct: 120 QEL--KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 162
Score = 35.6 bits (83), Expect = 0.014
Identities = 7/34 (20%), Positives = 16/34 (47%)
Query: 494 DDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 527
+ + NL + + G +++A I ++Q L
Sbjct: 4 SRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL 37
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide
repeat, response regulator helix-turn-HELX binding,
3-helix bundle; 2.30A {Bacillus subtilis}
Length = 383
Score = 139 bits (353), Expect = 7e-37
Identities = 34/240 (14%), Positives = 93/240 (38%), Gaps = 10/240 (4%)
Query: 287 HDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYG 346
D + A ++ Y + + + A I ++ N + + A +
Sbjct: 137 KDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIR-LLQCHSLFATNFL 195
Query: 347 KRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406
+Y++A ++A + E K+ + + L N+ L +QS+YE+ Y++RA+ +
Sbjct: 196 DLKQYEDAISHFQKAYSMAEAE--KQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAV 253
Query: 407 YELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQ 466
+E + ++ + + + K GK +A + + + + + + + +
Sbjct: 254 FE-ESN-ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKS 311
Query: 467 DRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
+ + + LE L +++ ++A Y ++ +++A + +V
Sbjct: 312 LYLSGPDEEAIQGFFDFLESKMLY-----ADLEDFAIDVAKYYHERKNFQKASAYFLKVE 366
Score = 124 bits (312), Expect = 2e-31
Identities = 36/321 (11%), Positives = 98/321 (30%), Gaps = 58/321 (18%)
Query: 224 QYASQGRYEVAVPLCKQALEDLEKTSGKYEAAE-----------TLEDCALRSRKESYDI 272
Y + A L ++ ++L++ + LE + +
Sbjct: 21 MYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQ 80
Query: 273 VKQAKVAQILGSGGHDHPDVATMLN--ILALVYRDQNKYKEAANLLNDALTIREKTLGEN 330
+ + + + + + DQ +Y A A + ++
Sbjct: 81 PRLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFV--KD 138
Query: 331 HAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQ 390
A ++ Y + + ++A EI ++ + + + + A +
Sbjct: 139 RIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA-YNIRLLQCHSLFATNFLDL 197
Query: 391 SKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAH 450
+YE+ ++Q+A + E + +T N+ C Q +Y++A
Sbjct: 198 KQYEDAISHFQKAYSMAE-AEK-QPQLMGRTLYNIGLCKNSQSQYEDA------------ 243
Query: 451 EREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYL 510
Y++RA+ ++E + ++ + + +
Sbjct: 244 --------------------------IPYFKRAIAVFE-ESN-ILPSLPQAYFLITQIHY 275
Query: 511 KQGKYKEAEILYKQVLTRAHE 531
K GK +A + + + + +
Sbjct: 276 KLGKIDKAHEYHSKGMAYSQK 296
Score = 110 bits (277), Expect = 1e-26
Identities = 30/244 (12%), Positives = 81/244 (33%), Gaps = 34/244 (13%)
Query: 216 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSG-KYEAAETLE------------DCA 262
+ Y + ++ +QA E ++ + + A
Sbjct: 144 EFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDA 203
Query: 263 LRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTI 322
+ +++Y + + K + L + L Q++Y++A A+ +
Sbjct: 204 ISHFQKAYSMAEAEK----------QPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAV 253
Query: 323 REKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNN 382
E++ ++ + ++ K GK +A + + +K + + L +
Sbjct: 254 FEES--NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKS 311
Query: 383 LALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILY 442
L EE + + LE L +++ ++A Y ++ +++A +
Sbjct: 312 LY----LSGPDEEAIQGFFDFLESKMLY-----ADLEDFAIDVAKYYHERKNFQKASAYF 362
Query: 443 KQVL 446
+V
Sbjct: 363 LKVE 366
Score = 74.9 bits (184), Expect = 1e-14
Identities = 19/203 (9%), Positives = 55/203 (27%), Gaps = 55/203 (27%)
Query: 216 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLE------------DCAL 263
+ + +YE A+ ++A E TL + A+
Sbjct: 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAI 244
Query: 264 RSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIR 323
K + + +++ P + ++ ++ K +A + +
Sbjct: 245 PYFKRAIAVFEESN----------ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYS 294
Query: 324 EKTLGENHAA---------------------------------VAATLNNLAVLYGKRGK 350
+K + + + ++A Y +R
Sbjct: 295 QKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKN 354
Query: 351 YKEAEPLCKRALEIREKVLGKEH 373
+++A + ++R+ + G
Sbjct: 355 FQKASAYFLKVEQVRQLIQGGVS 377
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
110; OGT, glcnac, nucleoporin, O-linked glycosylation,
TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP:
a.118.8.1
Length = 388
Score = 123 bits (310), Expect = 6e-31
Identities = 50/333 (15%), Positives = 99/333 (29%), Gaps = 82/333 (24%)
Query: 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALE-------------DLEKTSGKYEAAETL 258
P L L + R + + A++ ++ K G+ + A
Sbjct: 30 PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAI-- 87
Query: 259 EDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLND 318
E Y ++ PD LA + A
Sbjct: 88 ---------EHYR-----HALRL-------KPDFIDGYINLAAALVAAGDMEGAVQAYVS 126
Query: 319 ALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAK 378
AL + ++L L G+ +EA+ +A+E + P+ A
Sbjct: 127 ALQYNPD--------LYCVRSDLGNLLKALGRLEEAKACYLKAIETQ--------PNFAV 170
Query: 379 QLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEA 438
+NL + Q + ++++A+ + D N NL + + + A
Sbjct: 171 AWSNLGCVFNAQGEIWLAIHHFEKAVTL--------DPNFLDAYINLGNVLKEARIFDRA 222
Query: 439 EILYKQVLTRAHEREFGACDGDNKPIWQDR-----QKNKAKNREKYYQRALEIYELKLGP 493
Y + L + ++ + + ++ Y+RA+E+
Sbjct: 223 VAAYLRAL---------SLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL------- 266
Query: 494 DDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
+ NLA+ ++G EAE Y L
Sbjct: 267 -QPHFPDAYCNLANALKEKGSVAEAEDCYNTAL 298
Score = 122 bits (309), Expect = 9e-31
Identities = 64/327 (19%), Positives = 106/327 (32%), Gaps = 82/327 (25%)
Query: 218 LHNLVIQYASQGRYEVAVPLCKQALE-------------DLEKTSGKYEAAETLEDCALR 264
NL + G E AV AL+ +L K G+ E A+
Sbjct: 104 YINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAK-------- 155
Query: 265 SRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIRE 324
Y K + P+ A + L V+ Q + A + A+T+
Sbjct: 156 ---ACYL-----KAIET-------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP 200
Query: 325 KTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLA 384
NL + + + A RAL + P+ A NLA
Sbjct: 201 N--------FLDAYINLGNVLKEARIFDRAVAAYLRALSLS--------PNHAVVHGNLA 244
Query: 385 LLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQ 444
+ Q + Y+RA+E+ + NLA+ ++G EAE Y
Sbjct: 245 CVYYEQGLIDLAIDTYRRAIEL--------QPHFPDAYCNLANALKEKGSVAEAEDCYNT 296
Query: 445 VLTRAHEREFGACDGDNKPIWQDR-----QKNKAKNREKYYQRALEIYELKLGPDDSNVA 499
L + + ++ + + Y++ALE+ A
Sbjct: 297 AL---------RLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--------FPEFA 339
Query: 500 KTKNNLASCYLKQGKYKEAEILYKQVL 526
+NLAS +QGK +EA + YK+ +
Sbjct: 340 AAHSNLASVLQQQGKLQEALMHYKEAI 366
Score = 120 bits (304), Expect = 4e-30
Identities = 53/327 (16%), Positives = 96/327 (29%), Gaps = 82/327 (25%)
Query: 218 LHNLVIQYASQGRYEVAVPLCKQALED-------------LEKTSGKYEAAETLEDCALR 264
L + G +E A C Q + + + +
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSA-------- 53
Query: 265 SRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIRE 324
+ +P +A + L VY+++ + +EA AL ++
Sbjct: 54 ---HFST-----LAIKQ-------NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKP 98
Query: 325 KTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLA 384
NLA G + A AL+ PD+ ++L
Sbjct: 99 D--------FIDGYINLAAALVAAGDMEGAVQAYVSALQYN--------PDLYCVRSDLG 142
Query: 385 LLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQ 444
L + + EE + Y +A+E N A +NL + QG+ A +++
Sbjct: 143 NLLKALGRLEEAKACYLKAIET--------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEK 194
Query: 445 VLTRAHEREFGACDGDNKPIWQDR-----QKNKAKNREKYYQRALEIYELKLGPDDSNVA 499
+ D + + + + Y RAL + N A
Sbjct: 195 AV---------TLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--------SPNHA 237
Query: 500 KTKNNLASCYLKQGKYKEAEILYKQVL 526
NLA Y +QG A Y++ +
Sbjct: 238 VVHGNLACVYYEQGLIDLAIDTYRRAI 264
Score = 108 bits (273), Expect = 6e-26
Identities = 54/313 (17%), Positives = 96/313 (30%), Gaps = 82/313 (26%)
Query: 219 HNLVIQYASQGRYEVAVPLCKQALE-------------DLEKTSGKYEAAETLEDCALRS 265
+L + GR E A +A+E + G+ A
Sbjct: 139 SDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAI--------- 189
Query: 266 RKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREK 325
++ K + P+ L V ++ + A AL++
Sbjct: 190 --HHFE-----KAVTL-------DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN 235
Query: 326 TLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLAL 385
A NLA +Y ++G A +RA+E++ P NLA
Sbjct: 236 --------HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ--------PHFPDAYCNLAN 279
Query: 386 LCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQV 445
+ + E E Y AL + A + NNLA+ +QG +EA LY++
Sbjct: 280 ALKEKGSVAEAEDCYNTALRL--------CPTHADSLNNLANIKREQGNIEEAVRLYRKA 331
Query: 446 LTRAHEREFGACDGDNKPIWQDR-----QKNKAKNREKYYQRALEIYELKLGPDDSNVAK 500
L + + Q+ K + +Y+ A+ I A
Sbjct: 332 L---------EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--------SPTFAD 374
Query: 501 TKNNLASCYLKQG 513
+N+ + +
Sbjct: 375 AYSNMGNTLKEMQ 387
Score = 29.4 bits (67), Expect = 2.9
Identities = 25/133 (18%), Positives = 39/133 (29%), Gaps = 52/133 (39%)
Query: 217 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQA 276
+L+NL QG E AV L ++ALE +
Sbjct: 307 SLNNLANIKREQGNIEEAVRLYRKALE----------------------------V---- 334
Query: 277 KVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAA 336
P+ A + LA V + Q K +EA +A+ I A
Sbjct: 335 ------------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT--------FAD 374
Query: 337 TLNNLAVLYGKRG 349
+N+ +
Sbjct: 375 AYSNMGNTLKEMQ 387
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein
superhelix, transc activator; 1.45A {Escherichia coli}
SCOP: a.118.8.2
Length = 373
Score = 122 bits (306), Expect = 1e-30
Identities = 41/320 (12%), Positives = 84/320 (26%), Gaps = 25/320 (7%)
Query: 225 YASQGRYEVAVPLCKQALEDLEKTSGKYEA-AETLEDCALRSRKESYDIVKQAKVAQILG 283
+ G + A L K ALE+L A ++ L + E + + + +
Sbjct: 24 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMA 83
Query: 284 SGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAV 343
L + + Q + A A + + E + A
Sbjct: 84 RQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQ 143
Query: 344 LYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRA 403
L + EAE + +E+ + + L L + + R
Sbjct: 144 LLWAWARLDEAEASARSGIEVLSSY---QPQQQLQCLAMLIQCSLARGDLDNARSQLNRL 200
Query: 404 LEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKP 463
+ ++ + G A + + N
Sbjct: 201 ENLLG-NGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP---------EFANNH 250
Query: 464 IWQDRQKNKAKNR---------EKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGK 514
Q + +N A+ + E + E D + + L Y + G+
Sbjct: 251 FLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSD--LNRNLLLLNQLYWQAGR 308
Query: 515 YKEAEILYKQVLTRAHEREF 534
+A+ + L A+ F
Sbjct: 309 KSDAQRVLLDALKLANRTGF 328
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein
structure initiative, PSI, center for eukaryotic
structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Length = 307
Score = 108 bits (271), Expect = 2e-26
Identities = 34/278 (12%), Positives = 74/278 (26%), Gaps = 59/278 (21%)
Query: 249 SGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNK 308
+ K A A + K S D+ A+ A+ +++ +
Sbjct: 4 AQKISEAHEHIAKAEKYLKTS------------FMKWKPDYDSAASEYAKAAVAFKNAKQ 51
Query: 309 YKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 368
++A + HAA A ++ + EA ++A + +
Sbjct: 52 LEQAKDAYLQEAEAHANNRSLFHAAKA--FEQAGMMLKDLQRMPEAVQYIEKASVMYVE- 108
Query: 369 LGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASC 428
A L+ L + + YQ+A ++E A+ +
Sbjct: 109 -NGTPDTAAMALDRAGKLMEPL-DLSKAVHLYQQAAAVFE--NEERLRQAAELIGKASRL 164
Query: 429 YLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYE 488
++Q K+ EA Q+ +Y+
Sbjct: 165 LVRQQKFDEA--------------------------------------AASLQKEKSMYK 186
Query: 489 LKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
++ + K L + Y A+ ++
Sbjct: 187 -EME-NYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222
Score = 94.6 bits (235), Expect = 1e-21
Identities = 30/214 (14%), Positives = 72/214 (33%), Gaps = 11/214 (5%)
Query: 218 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCA--LRSRKESYDIVKQ 275
+ + + + E A Q E + AA+ E L+ + + V+
Sbjct: 39 YAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQY 98
Query: 276 AKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVA 335
+ A ++ A L+ + + +A +L A + E E A
Sbjct: 99 IEKASVMYVENGTPDTAAMALDRAGKLM-EPLDLSKAVHLYQQAAAVFENE--ERLRQAA 155
Query: 336 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEE 395
+ + L ++ K+ EA ++ + +++ + +P K+ L+ +++ Y
Sbjct: 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM--ENYPTCYKKCIAQVLVQLHRADYVA 213
Query: 396 VERYYQRALEIYELKLGPDDSNVAKTKNNLASCY 429
++ + + I S +L Y
Sbjct: 214 AQKCVRESYSIPGF----SGSEDCAALEDLLQAY 243
Score = 93.8 bits (233), Expect = 2e-21
Identities = 29/229 (12%), Positives = 66/229 (28%), Gaps = 48/229 (20%)
Query: 306 QNKYKEAANLLNDALTIREKTL---GENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRAL 362
K EA + A + + ++ + A+ AV + + ++A+ +
Sbjct: 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEA 63
Query: 363 EIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTK 422
E + AK ++ ++ + E +Y ++A +Y PD A
Sbjct: 64 EAHANN--RSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPD--TAAMAL 119
Query: 423 NNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQR 482
+ + +A YQ+
Sbjct: 120 DRAGKLM-EPLDLSKAV--------------------------------------HLYQQ 140
Query: 483 ALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 531
A ++E A+ + ++Q K+ EA ++ + E
Sbjct: 141 AAAVFEN--EERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKE 187
Score = 50.3 bits (120), Expect = 7e-07
Identities = 23/174 (13%), Positives = 43/174 (24%), Gaps = 44/174 (25%)
Query: 217 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQA 276
+ + AV L +QA E
Sbjct: 117 MALDRAGKLMEPLDLSKAVHLYQQAAAVFENE---------------------------- 148
Query: 277 KVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAA 336
A ++ + + Q K+ EAA L ++ ++ EN+
Sbjct: 149 ----------ERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM--ENYPTCYK 196
Query: 337 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQ 390
++ R Y A+ + + I G + L +L Q
Sbjct: 197 KCIAQVLVQLHRADYVAAQKCVRESYSI----PGFSGSEDCAALEDLLQAYDEQ 246
Score = 39.5 bits (92), Expect = 0.002
Identities = 11/104 (10%), Positives = 24/104 (23%), Gaps = 9/104 (8%)
Query: 430 LKQGKYKEAEILYKQ-------VLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQR 482
+ K EA + + A K + + + + Y +
Sbjct: 2 IAAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQ 61
Query: 483 ALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
E + + AK + EA ++
Sbjct: 62 EAEAHA-NNR-SLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKAS 103
Score = 31.8 bits (72), Expect = 0.48
Identities = 13/130 (10%), Positives = 31/130 (23%), Gaps = 42/130 (32%)
Query: 216 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQ 275
+ Q +++ A ++ ++
Sbjct: 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEME-------------------------- 189
Query: 276 AKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVA 335
++P LV + Y A + ++ +I G + +
Sbjct: 190 ------------NYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSI----PGFSGSEDC 233
Query: 336 ATLNNLAVLY 345
A L +L Y
Sbjct: 234 AALEDLLQAY 243
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein
structure initiative, northeast structural genomics
consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Length = 272
Score = 99.3 bits (248), Expect = 2e-23
Identities = 30/249 (12%), Positives = 70/249 (28%), Gaps = 44/249 (17%)
Query: 289 HPDVATMLNILALVYRDQNKYKEA---ANLLNDALTIREKTLGENHAAVAATLNNLAVLY 345
+ + N A+ Y + KY A + + +A +
Sbjct: 33 KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKA--------KSADFEYYGKIL 84
Query: 346 GKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALE 405
K+G+ A + A++ + N+ + +Y ++ +
Sbjct: 85 MKKGQDSLAIQQYQAAVDR--------DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR 136
Query: 406 IYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIW 465
+ K L Y +Y +A+ + +VL + +
Sbjct: 137 P--------TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL---------KPNIYIGY 179
Query: 466 QDR--------QKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKE 517
R K + YY++ +E+ + + +A Y +
Sbjct: 180 LWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239
Query: 518 AEILYKQVL 526
A+ +K +L
Sbjct: 240 ADAAWKNIL 248
Score = 78.1 bits (193), Expect = 3e-16
Identities = 33/233 (14%), Positives = 70/233 (30%), Gaps = 40/233 (17%)
Query: 299 LALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLC 358
A N Y EA + N + + N AV Y + KY A+
Sbjct: 9 YADFLFKNNNYAEAIEVFNKLEAKKYNS--------PYIYNRRAVCYYELAKYDLAQ--- 57
Query: 359 KRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNV 418
+ +E + + + + + + YQ A++ D+
Sbjct: 58 -KDIETYFSKV-NATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDR--------DTTR 107
Query: 419 AKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREK 478
+ S + +G + A ++ + + ++ + +A K
Sbjct: 108 LDMYGQIGSYFYNKGNFPLAIQYMEKQI---------RPTTTDPKVFYEL--GQAYYYNK 156
Query: 479 YYQRALEIYE--LKLGPDDSNVAKTKNNLASCYLKQG---KYKEAEILYKQVL 526
Y +A + L+L P+ A Q K A+ Y++++
Sbjct: 157 EYVKADSSFVKVLELKPNI---YIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206
Score = 67.3 bits (165), Expect = 1e-12
Identities = 16/149 (10%), Positives = 38/149 (25%), Gaps = 19/149 (12%)
Query: 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLY---G 346
+ L Y +Y +A + L ++ A
Sbjct: 139 TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI--------YIGYLWRARANAAQD 190
Query: 347 KRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406
K A+P ++ +E+ K ++ + +A + + ++ L +
Sbjct: 191 PDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL 250
Query: 407 YELKLGPDDSNVAKTKNNLASCYLKQGKY 435
D K + L +
Sbjct: 251 --------DPTNKKAIDGLKMKLEHHHHH 271
Score = 39.2 bits (92), Expect = 0.002
Identities = 19/180 (10%), Positives = 38/180 (21%), Gaps = 55/180 (30%)
Query: 217 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQA 276
+ L Y Y A + LE
Sbjct: 144 VFYELGQAYYYNKEYVKADSSFVKVLE--------------------------------- 170
Query: 277 KVAQILGSGGHDHPDVATMLNILALVYRDQN---KYKEAANLLNDALTIREKTLGENHAA 333
P++ A Q+ K A + + +
Sbjct: 171 -----------LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDE 219
Query: 334 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKY 393
+ +A Y +A+ K L + P K ++ L + ++ +
Sbjct: 220 LIEANEYIAYYYTINRDKVKADAAWKNILALD--------PTNKKAIDGLKMKLEHHHHH 271
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin
ligase; 2.60A {Schizosaccharomyces pombe}
Length = 597
Score = 101 bits (253), Expect = 8e-23
Identities = 43/326 (13%), Positives = 82/326 (25%), Gaps = 73/326 (22%)
Query: 218 LHNLVIQYASQGRYEVAVPLCKQALE----DLE---------KTSGKYEAAETLEDCALR 264
L + R+ + + + LE +L+ SG+
Sbjct: 308 LLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLY-------- 359
Query: 265 SRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIRE 324
+ + HP+ A + + Y NK EA + + T+
Sbjct: 360 ---LISN-----DLVDR-------HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDP 404
Query: 325 KTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLA 384
+ A + G++ +A A + L
Sbjct: 405 QF--------GPAWIGFAHSFAIEGEHDQAISAYTTAARLF--------QGTHLPYLFLG 448
Query: 385 LLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQ 444
+ Y Q + ++ D + N L + + A ++
Sbjct: 449 MQHMQLGNILLANEYLQSSYALF-----QYDPLLL---NELGVVAFNKSDMQTAINHFQN 500
Query: 445 VLTRAHEREFGACDGDNKPIWQDRQKNKAK--NREKYYQRALEIYE--LKLGPDDSNVAK 500
L N+ W N + K Y A++ L L +D A
Sbjct: 501 AL------LLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTND---AN 551
Query: 501 TKNNLASCYLKQGKYKEAEILYKQVL 526
+A YL + A + L
Sbjct: 552 VHTAIALVYLHKKIPGLAITHLHESL 577
Score = 81.4 bits (201), Expect = 2e-16
Identities = 50/329 (15%), Positives = 91/329 (27%), Gaps = 48/329 (14%)
Query: 209 YEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDC-----AL 263
+I L Y G Y A L + ++ +Y AA L AL
Sbjct: 111 LDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGAL 170
Query: 264 RSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIR 323
E+ K K A L A+M + VY + + + A +AL +
Sbjct: 171 NLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD 230
Query: 324 EKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNL 383
K + L + + L++ KE + L L
Sbjct: 231 AKC--------YEAFDQLVSNHLLTADEEWDL-----VLKLNYSTYSKEDAAFLRSLYML 277
Query: 384 ALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYK 443
L + Y ++ S++ A + ++ + +
Sbjct: 278 KLNKTSHEDELRRAEDYLSSINGL-----EKSSDL---LLCKADTLFVRSRFIDVLAITT 329
Query: 444 QVLTRAHERE-----FGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNV 498
++L A + + +KNK ++ + P+
Sbjct: 330 KILEIDPYNLDVYPLHLAS------LHESGEKNKL---YLISNDLVDRH-----PEK--- 372
Query: 499 AKTKNNLASCYLKQGKYKEAEILYKQVLT 527
A T + YL K EA + + T
Sbjct: 373 AVTWLAVGIYYLCVNKISEARRYFSKSST 401
Score = 37.5 bits (87), Expect = 0.010
Identities = 25/179 (13%), Positives = 49/179 (27%), Gaps = 48/179 (26%)
Query: 348 RGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIY 407
+ +YK A + ++ L+I +P+ A LA + Y + +
Sbjct: 97 QQQYKCAAFVGEKVLDI------TGNPNDAF---WLAQVYCCTGDYARAKCLLTKEDLY- 146
Query: 408 ELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQD 467
+ + + A C +K ++ A L + +
Sbjct: 147 --------NRSSACRYLAAFCLVKLYDWQGALNLLGET---------------------N 177
Query: 468 RQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
+ KN K + I A Y + A+ YK+ L
Sbjct: 178 PFRKDEKNANKLLMQDGGI---------KLEASMCYLRGQVYTNLSNFDRAKECYKEAL 227
Score = 30.6 bits (69), Expect = 1.6
Identities = 16/90 (17%), Positives = 31/90 (34%), Gaps = 14/90 (15%)
Query: 429 YLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYE 488
L Q +YK A + ++VL G+ + + Y RA +
Sbjct: 94 ALMQQQYKCAAFVGEKVL---------DITGNPNDAF---WLAQVYCCTGDYARAKCLLT 141
Query: 489 LKLGPDDSNVAKTKNNLASCYLKQGKYKEA 518
+ + S+ + A C +K ++ A
Sbjct: 142 KEDLYNRSSAC--RYLAAFCLVKLYDWQGA 169
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis,
TPR, superhelix, protein binding; HET: MSE; 2.00A
{Pseudomonas aeruginosa} PDB: 2fi7_A
Length = 252
Score = 96.2 bits (240), Expect = 1e-22
Identities = 38/237 (16%), Positives = 67/237 (28%), Gaps = 68/237 (28%)
Query: 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRG 349
+ L L Y + ++A L AL I A LAV++
Sbjct: 34 DEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS--------SADAHAALAVVFQTEM 85
Query: 350 KYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYEL 409
+ K A+ ++AL A+ LNN Q +YEE + A +
Sbjct: 86 EPKLADEEYRKALASD--------SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQD--- 134
Query: 410 KLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQ 469
++ NL L+ K +A
Sbjct: 135 ---TLYPERSRVFENLGLVSLQMKKPAQA------------------------------- 160
Query: 470 KNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
++Y++++L + + N +A K+ +Y A Y
Sbjct: 161 -------KEYFEKSLRL--------NRNQPSVALEMADLLYKEREYVPARQYYDLFA 202
Score = 83.1 bits (206), Expect = 4e-18
Identities = 38/235 (16%), Positives = 68/235 (28%), Gaps = 66/235 (28%)
Query: 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYD 271
L + Y +G E A ++ALE
Sbjct: 34 DEARDAYIQLGLGYLQRGNTEQAKVPLRKALE---------------------------- 65
Query: 272 IVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENH 331
P A LA+V++ + + K A AL +
Sbjct: 66 ----------------IDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRN----- 104
Query: 332 AAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQS 391
A LNN ++ +Y+EA A + P+ ++ NL L+
Sbjct: 105 ---ARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLY------PERSRVFENLGLVSLQMK 155
Query: 392 KYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 446
K + + Y++++L + + N +A K+ +Y A Y
Sbjct: 156 KPAQAKEYFEKSLRL--------NRNQPSVALEMADLLYKEREYVPARQYYDLFA 202
Score = 57.7 bits (140), Expect = 1e-09
Identities = 21/151 (13%), Positives = 49/151 (32%), Gaps = 31/151 (20%)
Query: 381 NNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEI 440
++ + + + + + K + L YL++G ++A++
Sbjct: 8 HHHSSGLVPRGSHMGDQNPLK------TDKGRDEA---RDAYIQLGLGYLQRGNTEQAKV 58
Query: 441 LYKQVLTRAHEREFGACDGDNKPIWQDR-----QKNKAKNREKYYQRALEIYELKLGPDD 495
++ L D + + + K ++ Y++AL D
Sbjct: 59 PLRKAL---------EIDPSSADAHAALAVVFQTEMEPKLADEEYRKALAS--------D 101
Query: 496 SNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
S A+ NN +Q +Y+EA +
Sbjct: 102 SRNARVLNNYGGFLYEQKRYEEAYQRLLEAS 132
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting
complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin,
ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Length = 330
Score = 97.4 bits (243), Expect = 2e-22
Identities = 45/312 (14%), Positives = 94/312 (30%), Gaps = 42/312 (13%)
Query: 218 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAK 277
+ +L ++ +++ L +E K + K + K
Sbjct: 25 VVSLAERHYYNCDFKMCYKLTSVVME---KDPFHASCLPVHIGTLVELNKANELFYLSHK 81
Query: 278 VAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAA-NLLNDALTIREKTLGENHAAVAA 336
+ + +P + Y E A L+ A T+ KT G
Sbjct: 82 LVDL-------YPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAW----- 128
Query: 337 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEV 396
+ ++ +A A ++ + + L + +
Sbjct: 129 --IAYGHSFAVESEHDQAMAAYFTAAQLM--------KGCHLPMLYIGLEYGLTNNSKLA 178
Query: 397 ERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGA 456
ER++ +AL I P+D V + + + G++K AE + L +
Sbjct: 179 ERFFSQALSIA-----PEDPFVM---HEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEV 230
Query: 457 CDGDNKPIWQDRQKNKAKNREKYYQRALEIYE--LKLGPDDSNVAKTKNNLASCYLKQGK 514
+P+ + K Y AL+ + L L P + A T + + + G
Sbjct: 231 TVDKWEPLL--NNLGHVCRKLKKYAEALDYHRQALVLIPQN---ASTYSAIGYIHSLMGN 285
Query: 515 YKEAEILYKQVL 526
++ A + L
Sbjct: 286 FENAVDYFHTAL 297
Score = 87.0 bits (216), Expect = 7e-19
Identities = 30/155 (19%), Positives = 51/155 (32%), Gaps = 17/155 (10%)
Query: 289 HPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAV-AATLNNLAVLYGK 347
P+ +++ + +V ++K A DAL + E LNNL + K
Sbjct: 189 APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRK 248
Query: 348 RGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIY 407
KY EA ++AL + P A + + + +E Y+ AL +
Sbjct: 249 LKKYAEALDYHRQALVLI--------PQNASTYSAIGYIHSLMGNFENAVDYFHTALGL- 299
Query: 408 ELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILY 442
+ + L C EA I
Sbjct: 300 -------RRDDTFSVTMLGHCIEMYIGDSEAYIGA 327
Score = 83.1 bits (206), Expect = 1e-17
Identities = 34/265 (12%), Positives = 73/265 (27%), Gaps = 50/265 (18%)
Query: 287 HDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYG 346
++ DV + LA + +K L + + HA+ L
Sbjct: 19 QENLDV---VVSLAERHYYNCDFKMCYKLTSVVMEKDP-----FHASC---LPVHIGTLV 67
Query: 347 KRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSK-YEEVERYYQRALE 405
+ K E L + +++ +P + E RY +A
Sbjct: 68 ELNKANELFYLSHKLVDL--------YPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATT 119
Query: 406 IYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIW 465
+ + + + ++ +A Y
Sbjct: 120 L--------EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAA---------QLMKGCHLPM 162
Query: 466 -----QDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEI 520
+ N +K E+++ +AL I P+D V + + + G++K AE
Sbjct: 163 LYIGLEYGLTNNSKLAERFFSQALSIA-----PEDPFVM---HEVGVVAFQNGEWKTAEK 214
Query: 521 LYKQVLTRAHEREFGACDGDNKPIW 545
+ L + +P+
Sbjct: 215 WFLDALEKIKAIGNEVTVDKWEPLL 239
Score = 65.4 bits (160), Expect = 9e-12
Identities = 35/225 (15%), Positives = 64/225 (28%), Gaps = 45/225 (20%)
Query: 307 NKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE 366
+ K + ++ +++ L EN + +LA + +K L +E
Sbjct: 2 SYNKPSETVIPESV----DGLQEN----LDVVVSLAERHYYNCDFKMCYKLTSVVMEK-- 51
Query: 367 KVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLA 426
P A L +K E+ + +++Y P + + +
Sbjct: 52 ------DPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-----PSN---PVSWFAVG 97
Query: 427 SCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNRE-----KYYQ 481
YL G E Y L++A + P W + A E Y
Sbjct: 98 CYYLMVGHKNEHARRY---LSKATT-----LEKTYGPAWIAYGHSFAVESEHDQAMAAYF 149
Query: 482 RALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
A ++ + Y K AE + Q L
Sbjct: 150 TAAQL--------MKGCHLPMLYIGLEYGLTNNSKLAERFFSQAL 186
Score = 61.9 bits (151), Expect = 1e-10
Identities = 33/191 (17%), Positives = 59/191 (30%), Gaps = 43/191 (22%)
Query: 218 LHNLVIQYASQGRYEVAVPLCKQALE-------------DLEKTSGKYEAAETLEDCALR 264
+ + ++Y ++A QAL + +G+++ AE AL
Sbjct: 162 MLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALE 221
Query: 265 SRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIRE 324
K + V +LN L V R KY EA + AL +
Sbjct: 222 KIKAIGNEVTV--------------DKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIP 267
Query: 325 KTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLA 384
+ A+T + + ++ G ++ A AL +R D + L
Sbjct: 268 QN--------ASTYSAIGYIHSLMGNFENAVDYFHTALGLR--------RDDTFSVTMLG 311
Query: 385 LLCQNQSKYEE 395
+ E
Sbjct: 312 HCIEMYIGDSE 322
Score = 61.5 bits (150), Expect = 1e-10
Identities = 19/179 (10%), Positives = 52/179 (29%), Gaps = 28/179 (15%)
Query: 349 GKY-KEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIY 407
G Y K +E + +++ +E+ DV + +LA ++ + +E
Sbjct: 1 GSYNKPSETVIPESVDGL-----QENLDV---VVSLAERHYYNCDFKMCYKLTSVVMEKD 52
Query: 408 ELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQD 467
P ++ ++ K E L +++ +
Sbjct: 53 -----PFHASCL---PVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWF---AVGCYYL 101
Query: 468 RQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
+K ++ +Y +A + + + + ++ +A Y
Sbjct: 102 MVGHKNEHARRYLSKATTL--------EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAA 152
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein;
secretin, TPR repeat, type IV pilus, bacterail
virulence; 1.54A {Neisseria meningitidis}
Length = 225
Score = 94.3 bits (235), Expect = 4e-22
Identities = 44/242 (18%), Positives = 72/242 (29%), Gaps = 69/242 (28%)
Query: 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGK 347
V+ + LA+ Y Y++A + DAL K A +Y
Sbjct: 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK--------NELAWLVRAEIYQY 54
Query: 348 RGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNL-ALLCQNQSKYEEVERYYQRALEI 406
+A+ ++AL I+ PD A+ NN LC ++ E Y+ +AL
Sbjct: 55 LKVNDKAQESFRQALSIK--------PDSAEINNNYGWFLCGRLNRPAESMAYFDKALAD 106
Query: 407 YELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQ 466
P N C KQG++ A
Sbjct: 107 ------PTYPTPYIANLNKGICSAKQGQFGLA---------------------------- 132
Query: 467 DRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
E Y +R+L LA + G+ +A+ +K+
Sbjct: 133 ----------EAYLKRSLAA--------QPQFPPAFKELARTKMLAGQLGDADYYFKKYQ 174
Query: 527 TR 528
+R
Sbjct: 175 SR 176
Score = 65.7 bits (161), Expect = 2e-12
Identities = 34/249 (13%), Positives = 67/249 (26%), Gaps = 61/249 (24%)
Query: 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALE-------------DLEKTSGKYEAAETL 258
L ++Y Y A + AL+ ++ + + A+
Sbjct: 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQ-- 62
Query: 259 EDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQ-NKYKEAANLLN 317
ES+ + I PD A + N + N+ E+ +
Sbjct: 63 ---------ESFR-----QALSI-------KPDSAEINNNYGWFLCGRLNRPAESMAYFD 101
Query: 318 DALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVA 377
AL N + K+G++ AE KR+L + P
Sbjct: 102 KALADPTY------PTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ--------PQFP 147
Query: 378 KQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKE 437
LA + + + Y+++ E ++L +
Sbjct: 148 PAFKELARTKMLAGQLGDADYYFKKYQSRVE----------VLQADDLLLGWKIAKALGN 197
Query: 438 AEILYKQVL 446
A+ Y+
Sbjct: 198 AQAAYEYEA 206
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT
protein-protein interactions, protein binding; 2.00A
{Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A
3asg_A 3ash_A 3as8_A 3asf_A
Length = 186
Score = 92.5 bits (231), Expect = 6e-22
Identities = 34/237 (14%), Positives = 58/237 (24%), Gaps = 70/237 (29%)
Query: 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRG 349
+ + +Y +A LL V +L + Y K G
Sbjct: 5 DIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-----AFDVDV---ALHLGIAYVKTG 56
Query: 350 KYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYEL 409
L +R+L PD K L L KY+ + E
Sbjct: 57 AVDRGTELLERSLADA--------PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA--- 105
Query: 410 KLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQ 469
+ + L G++ EA
Sbjct: 106 -----NPINFNVRFRLGVALDNLGRFDEA------------------------------- 129
Query: 470 KNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
++ AL + N K +A Y + G+++EA +K+
Sbjct: 130 -------IDSFKIALGL--------RPNEGKVHRAIAFSYEQMGRHEEALPHFKKAN 171
Score = 68.6 bits (169), Expect = 9e-14
Identities = 38/201 (18%), Positives = 63/201 (31%), Gaps = 52/201 (25%)
Query: 219 HNLVIQYASQGRYEVAVPLCKQALE----DLE---------KTSGKYEAAETLEDCALRS 265
+ I +A GRY AV L +Q + D++ +G +
Sbjct: 12 RDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGT--------- 62
Query: 266 RKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREK 325
E + + PD + +L L Y KY A LL
Sbjct: 63 --ELLE-----RSLAD-------APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPI 108
Query: 326 TLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLAL 385
L V G++ EA K AL +R P+ K +A
Sbjct: 109 --------NFNVRFRLGVALDNLGRFDEAIDSFKIALGLR--------PNEGKVHRAIAF 152
Query: 386 LCQNQSKYEEVERYYQRALEI 406
+ ++EE ++++A E+
Sbjct: 153 SYEQMGRHEEALPHFKKANEL 173
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP:
k.38.1.1
Length = 243
Score = 92.6 bits (231), Expect = 2e-21
Identities = 30/231 (12%), Positives = 64/231 (27%), Gaps = 46/231 (19%)
Query: 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRG 349
+ A A + N+ + A + AL + A +Y +
Sbjct: 54 KEDAIPYINFANLLSSVNELERALAFYDKALELDSS--------AATAYYGAGNVYVVKE 105
Query: 350 KYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYEL 409
YKEA+ + ++AL + L + + + Y QRA+E+
Sbjct: 106 MYKEAKDMFEKALRAG--------MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--- 154
Query: 410 KLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDR- 468
+ N + + C +G EA + V D + + +
Sbjct: 155 -----NENDTEARFQFGMCLANEGMLDEALSQFAAVT---------EQDPGHADAFYNAG 200
Query: 469 ----QKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKY 515
K + + +A++I + + +
Sbjct: 201 VTYAYKENREKALEMLDKAIDI--------QPDHMLALHAKKLLGHHHHHH 243
Score = 84.1 bits (209), Expect = 1e-18
Identities = 38/226 (16%), Positives = 78/226 (34%), Gaps = 49/226 (21%)
Query: 306 QNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 365
+ + ++ L+ + + T + G Y++A +A+E
Sbjct: 5 HHHHHHSSGLVPRGSHMA-----------SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN 53
Query: 366 EKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNL 425
+ A N A L + ++ E +Y +ALE+ DS+ A
Sbjct: 54 --------KEDAIPYINFANLLSSVNELERALAFYDKALEL--------DSSAATAYYGA 97
Query: 426 ASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDR-----QKNKAKNREKYY 480
+ Y+ + YKEA+ ++++ L +N ++ + + K Y
Sbjct: 98 GNVYVVKEMYKEAKDMFEKAL---------RAGMENGDLFYMLGTVLVKLEQPKLALPYL 148
Query: 481 QRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
QRA+E+ + N + + C +G EA + V
Sbjct: 149 QRAVEL--------NENDTEARFQFGMCLANEGMLDEALSQFAAVT 186
Score = 73.3 bits (181), Expect = 6e-15
Identities = 27/230 (11%), Positives = 54/230 (23%), Gaps = 60/230 (26%)
Query: 219 HNLVIQYASQGRYEVAVPLCKQALE-------------DLEKTSGKYEAAETLEDCALRS 265
N +S E A+ +ALE ++ Y+ A+
Sbjct: 61 INFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAK--------- 111
Query: 266 RKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREK 325
+ ++ K + + + +L V + K A L A+ + E
Sbjct: 112 --DMFE-----KALRA-------GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN 157
Query: 326 TLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLAL 385
+ G EA E P A N +
Sbjct: 158 --------DTEARFQFGMCLANEGMLDEALSQFAAVTEQD--------PGHADAFYNAGV 201
Query: 386 LCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKY 435
+ E+ +A++I + + +
Sbjct: 202 TYAYKENREKALEMLDKAIDI--------QPDHMLALHAKKLLGHHHHHH 243
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha
helix, antivirus, antiviral protein; 2.80A {Homo
sapiens}
Length = 472
Score = 94.6 bits (235), Expect = 7e-21
Identities = 37/242 (15%), Positives = 79/242 (32%), Gaps = 16/242 (6%)
Query: 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTI-REKTLGENHAAVAATLNNLAVLYG 346
+ ATM N+LA + + + + A L A + +++ + T N A +Y
Sbjct: 46 NREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYY 105
Query: 347 KRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNL--ALLCQNQSKYEEVERYYQRAL 404
G+ + + + + EK + + L ++ E + +++AL
Sbjct: 106 HMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKAL 165
Query: 405 EIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPI 464
E P + + + A +Q + + ++ K
Sbjct: 166 EKK-----PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLH 220
Query: 465 WQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQ 524
+ + EK + ALE V + A Y ++ + +A L K+
Sbjct: 221 KMREEGEEEGEGEKLVEEALEK--------APGVTDVLRSAAKFYRRKDEPDKAIELLKK 272
Query: 525 VL 526
L
Sbjct: 273 AL 274
Score = 94.2 bits (234), Expect = 9e-21
Identities = 47/338 (13%), Positives = 99/338 (29%), Gaps = 47/338 (13%)
Query: 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLED-----CALRSR 266
+ + L +G+ E A+ ++A E +++ +L
Sbjct: 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHM 107
Query: 267 KESYD----IVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTI 322
D + K V + S + N+ + A AL
Sbjct: 108 GRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK 167
Query: 323 REKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNN 382
+ + + L + + A ++A+ + +PD
Sbjct: 168 K-----PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL--------NPDNQYLKVL 214
Query: 383 LALLCQNQSK----YEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEA 438
LAL + E E+ + ALE V + A Y ++ + +A
Sbjct: 215 LALKLHKMREEGEEEGEGEKLVEEALEK--------APGVTDVLRSAAKFYRRKDEPDKA 266
Query: 439 EILYKQVLTRAHEREF-----GACDGDNKPIWQDRQKNKAKNREK---YYQRALEIYE-- 488
L K+ L + G C + ++N + K A+ +
Sbjct: 267 IELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKA 326
Query: 489 LKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
+ + + + LAS + +Y+EAE +++
Sbjct: 327 DEANDNL---FRVCSILASLHALADQYEEAEYYFQKEF 361
Score = 91.5 bits (227), Expect = 8e-20
Identities = 48/337 (14%), Positives = 108/337 (32%), Gaps = 62/337 (18%)
Query: 225 YASQGRYEVAVPLCKQALE----DLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQ 280
+ E A ++ALE + E TSG A+ L++ + + D ++QA
Sbjct: 148 KCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDN--WPPSQNAIDPLRQAI--- 202
Query: 281 ILGSGGHDHPDVATML-NILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLN 339
D+ + +L L + + + E L+ +AL L
Sbjct: 203 ---RLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGV--------TDVLR 251
Query: 340 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSK------- 392
+ A Y ++ + +A L K+ALE P+ A + + +
Sbjct: 252 SAAKFYRRKDEPDKAIELLKKALEY--------IPNNAYLHCQIGCCYRAKVFQVMNLRE 303
Query: 393 -----YEEVERYYQRALEIYE--LKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQV 445
++ A+ + + + + + LAS + +Y+EAE +++
Sbjct: 304 NGMYGKRKLLELIGHAVAHLKKADEANDNL---FRVCSILASLHALADQYEEAEYYFQKE 360
Query: 446 LTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYE----------------L 489
++ +Q Q ++ ++I +
Sbjct: 361 FSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAK 420
Query: 490 KLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
+ ++ + LA K ++A+ ++ L
Sbjct: 421 MRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGL 457
Score = 75.0 bits (184), Expect = 2e-14
Identities = 36/227 (15%), Positives = 79/227 (34%), Gaps = 16/227 (7%)
Query: 307 NKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE 366
N + +L + + +T +N A N LA L +G+ + A ++A E+ +
Sbjct: 23 NLMEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQ 82
Query: 367 KVLGKE-HPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNL 425
+ + N A + + + +V+ Y + + E P +
Sbjct: 83 QEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEE 142
Query: 426 ASCYLK--QGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRA 483
LK + + A++ +++ L + G ++ ++N ++A
Sbjct: 143 GWTRLKCGGNQNERAKVCFEKAL-EKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQA 201
Query: 484 LEIYELKLGPDDSNVAKTKNNLASCYLK----QGKYKEAEILYKQVL 526
+ + PD+ K LA K + E E L ++ L
Sbjct: 202 IRLN-----PDN---QYLKVLLALKLHKMREEGEEEGEGEKLVEEAL 240
Score = 62.3 bits (151), Expect = 2e-10
Identities = 42/306 (13%), Positives = 87/306 (28%), Gaps = 55/306 (17%)
Query: 218 LHNLVIQYASQGRYEVAVPLCKQALE-DLEKTSGKYEAAETLEDCALRSRKESYDIVKQA 276
L + + + A+ +QA+ + + K A L +E
Sbjct: 178 LAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVE 237
Query: 277 KVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAA 336
+ + P V +L A YR +++ +A LL AL A
Sbjct: 238 EALEK-------APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNN--------AY 282
Query: 337 TLNNLAVLYGKRGK------------YKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLA 384
+ Y + ++ L A+ +K + + ++ + + LA
Sbjct: 283 LHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKAD-EANDNLFRVCSILA 341
Query: 385 LLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGK-YKEAEILYK 443
L +YEE E Y+Q+ + L Q K +A +
Sbjct: 342 SLHALADQYEEAEYYFQKEFS-----KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFI 396
Query: 444 QVL------TRAHEREFGACDGDNKPIWQD--------------RQKNKAKNREKYYQRA 483
+ + + + + ++ K + ++ +R
Sbjct: 397 EGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERG 456
Query: 484 LEIYEL 489
LE L
Sbjct: 457 LESGSL 462
Score = 33.8 bits (77), Expect = 0.16
Identities = 17/132 (12%), Positives = 34/132 (25%), Gaps = 18/132 (13%)
Query: 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALED-----------------LEKTSGKYEA 254
R L +A +YE A ++ +
Sbjct: 331 DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDK 390
Query: 255 AETLEDCALRSRKESYDIVKQAKVAQ-ILGSGGHDHPDVATMLNILALVYRDQNKYKEAA 313
A ++ ++S + K Q I + + L++LA + K ++A
Sbjct: 391 AIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQAD 450
Query: 314 NLLNDALTIREK 325
L
Sbjct: 451 EDSERGLESGSL 462
Score = 29.1 bits (65), Expect = 3.8
Identities = 7/52 (13%), Positives = 16/52 (30%)
Query: 494 DDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIW 545
+ A N LA +G+ + A ++ + + + W
Sbjct: 46 NREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTW 97
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein
transport; 3.00A {Saccharomyces cerevisiae}
Length = 514
Score = 94.0 bits (234), Expect = 1e-20
Identities = 58/414 (14%), Positives = 117/414 (28%), Gaps = 61/414 (14%)
Query: 129 QSSEQANSQLEEEKKHLEFMSSIRKYDSDIQGDENSGDQKSDKHKQDDPVVDLFPDEDND 188
S E + ++ + D+ Q + + K P +
Sbjct: 108 ASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQE---NLPSVTSM 164
Query: 189 DRNNLSPTPPSQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKT 248
P FA + + L NL S Y+ A +A E+
Sbjct: 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNL--YKRSPESYDKADESFTKAARLFEEQ 222
Query: 249 SGKYEAAETLEDC---ALRSRKESYDIVKQAKVA--------QILGSGGHDHPDVATMLN 297
K E L++ +L + A ++ P V +
Sbjct: 223 LDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL-------FPRVNS-YI 274
Query: 298 ILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPL 357
+AL+ D+N E N + AL + ++ + + Y +A
Sbjct: 275 YMALIMADRNDSTEYYNYFDKALKLDSN--------NSSVYYHRGQMNFILQNYDQAGKD 326
Query: 358 CKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSN 417
+A E+ P+ LA L ++K+++ E + A
Sbjct: 327 FDKAKEL--------DPENIFPYIQLACLAYRENKFDDCETLFSEAKRK--------FPE 370
Query: 418 VAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREF-----GACDGDNKPIWQDRQKNK 472
+ N A + + +A Y + ++ + G + ++
Sbjct: 371 APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVEN 430
Query: 473 AKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
++A ++ D + K LA L+Q EA L+++
Sbjct: 431 FIEATNLLEKASKL--------DPRSEQAKIGLAQMKLQQEDIDEAITLFEESA 476
Score = 69.4 bits (170), Expect = 1e-12
Identities = 43/350 (12%), Positives = 84/350 (24%), Gaps = 69/350 (19%)
Query: 219 HNLVIQYASQGRYEVAVPLCKQALE--------------------DLEKTSGKYEAAETL 258
NL Y S G + V + +ALE
Sbjct: 43 SNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLN 102
Query: 259 EDCALRSRKESYDIV-----------KQAKVAQILGSGGHDHPDVATMLNILALVYRDQN 307
D S + + K + + A
Sbjct: 103 GDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162
Query: 308 KYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367
+ LT N A + Y +A+ +A + E+
Sbjct: 163 SMASFFGIFKPELTF-ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEE 221
Query: 368 VL------GKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKT 421
L K +A L + + ++ ++A+E++ P +
Sbjct: 222 QLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF-----PR----VNS 272
Query: 422 KNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDR-----QKNKAKNR 476
+A + E + + L D +N ++ R
Sbjct: 273 YIYMALIMADRNDSTEYYNYFDKAL---------KLDSNNSSVYYHRGQMNFILQNYDQA 323
Query: 477 EKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
K + +A E+ D LA ++ K+ + E L+ +
Sbjct: 324 GKDFDKAKEL--------DPENIFPYIQLACLAYRENKFDDCETLFSEAK 365
Score = 69.4 bits (170), Expect = 1e-12
Identities = 33/244 (13%), Positives = 63/244 (25%), Gaps = 23/244 (9%)
Query: 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGK 347
+ A L + KY +A N AL ++E +NL+ Y
Sbjct: 1 EKDKYALALKDKGNQFFRNKKYDDAIKYYNWALELKED---------PVFYSNLSACYVS 51
Query: 348 RGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIY 407
G K+ + +ALE+ PD +K L A + K+ +
Sbjct: 52 VGDLKKVVEMSTKALEL--------KPDYSKVLLRRASANEGLGKFADAMFDLSVL---- 99
Query: 408 ELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQD 467
L +D++ + K KE E
Sbjct: 100 SLNGDFNDAS-IEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENL 158
Query: 468 RQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 527
+ ++ L ++++ Y +A+ + +
Sbjct: 159 PSVTSMASFFGIFKPELTFANYD-ESNEADKELMNGLSNLYKRSPESYDKADESFTKAAR 217
Query: 528 RAHE 531
E
Sbjct: 218 LFEE 221
Score = 61.3 bits (149), Expect = 4e-10
Identities = 32/316 (10%), Positives = 73/316 (23%), Gaps = 65/316 (20%)
Query: 218 LHNLVIQYASQGRYEVAVPLCKQA--LEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQ 275
L G++ A+ D S + L A+ KE + +
Sbjct: 76 LLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDT 135
Query: 276 AKVAQILGSGGHD----HPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENH 331
A S + K + +++ E +
Sbjct: 136 ATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESN---EADKELMN 192
Query: 332 AAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQS 391
+ + +A L + L+ + K +A L + + ++
Sbjct: 193 GLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDE-KLKEKLAISLEHTGIFKFLKN 251
Query: 392 KYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451
++A+E++ P + +A + E
Sbjct: 252 DPLGAHEDIKKAIELF-----PR----VNSYIYMALIMADRNDSTEYY------------ 290
Query: 452 REFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK 511
Y+ +AL++ DSN + +
Sbjct: 291 --------------------------NYFDKALKL--------DSNNSSVYYHRGQMNFI 316
Query: 512 QGKYKEAEILYKQVLT 527
Y +A + +
Sbjct: 317 LQNYDQAGKDFDKAKE 332
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown
function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Length = 275
Score = 90.4 bits (225), Expect = 2e-20
Identities = 42/254 (16%), Positives = 72/254 (28%), Gaps = 40/254 (15%)
Query: 276 AKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVA 335
A++ QIL S + A +L ++Y A N + AL IR
Sbjct: 26 ARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM--------P 77
Query: 336 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEE 395
N L + + G + A LE+ P N + + +
Sbjct: 78 EVFNYLGIYLTQAGNFDAAYEAFDSVLELD--------PTYNYAHLNRGIALYYGGRDKL 129
Query: 396 VERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFG 455
+ + D N L K + K+A+ + KQ ++
Sbjct: 130 AQDDLLAFYQD--------DPNDPFRSLWLYLAEQKLDE-KQAKEVLKQHFEKSD----- 175
Query: 456 ACDGDNKPIWQDRQKNKAKNREK-YYQRALEIYE--LKLGPDDSNVAKTKNNLASCYLKQ 512
+ W + E+ +R L ++T L YL
Sbjct: 176 ----KEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHL---SETNFYLGKYYLSL 228
Query: 513 GKYKEAEILYKQVL 526
G A L+K +
Sbjct: 229 GDLDSATALFKLAV 242
Score = 62.3 bits (152), Expect = 6e-11
Identities = 35/242 (14%), Positives = 64/242 (26%), Gaps = 58/242 (23%)
Query: 218 LHNLVIQYASQGRYEVAVPLCKQALE-------------DLEKTSGKYEAAETLEDCALR 264
L+ + Y S G +A QAL +G ++AA
Sbjct: 46 LYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAY-------- 97
Query: 265 SRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIRE 324
E++D V ++ P + + K A + L
Sbjct: 98 ---EAFD-----SVLEL-------DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP 142
Query: 325 KTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLA 384
L + K + + E L + + KE L
Sbjct: 143 N--------DPFRSLWLYLAEQKLDEKQAKEVLKQHF-----EKSDKEQWGWNIVEFYLG 189
Query: 385 LLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQ 444
+ Q+ E ++ + ++++T L YL G A L+K
Sbjct: 190 NI-SEQTLMERLKADATDNTSL--------AEHLSETNFYLGKYYLSLGDLDSATALFKL 240
Query: 445 VL 446
+
Sbjct: 241 AV 242
Score = 51.5 bits (124), Expect = 2e-07
Identities = 24/152 (15%), Positives = 42/152 (27%), Gaps = 20/152 (13%)
Query: 377 AKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYK 436
++ LA+ Q + E + ++ L L D A+ Y G
Sbjct: 5 WRKSEVLAVPLQPTLQQEVILARMEQILASRALT----DDERAQLLYERGVLYDSLGLRA 60
Query: 437 EAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYE--LKLGPD 494
A + Q L A D ++ + + A E ++ L+L P
Sbjct: 61 LARNDFSQAL---------AIRPDMPEVFNYL--GIYLTQAGNFDAAYEAFDSVLELDPT 109
Query: 495 DSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
N G+ K A+
Sbjct: 110 Y---NYAHLNRGIALYYGGRDKLAQDDLLAFY 138
Score = 45.4 bits (108), Expect = 2e-05
Identities = 24/189 (12%), Positives = 51/189 (26%), Gaps = 34/189 (17%)
Query: 219 HNLVIQYASQGRYEVAVPLCKQALE----DLEKTSGKYEAAETLEDC-ALRSRKESYDIV 273
N I GR ++A + D ++ Y A + L++ A K+ ++
Sbjct: 115 LNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174
Query: 274 KQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAA 333
+ + + L + +Q + D ++ E
Sbjct: 175 DK------------EQWGWNIVEFYLGNIS-EQTLMERLKADATDNTSLAEH-------- 213
Query: 334 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKY 393
++ T L Y G A L K A+ + L +
Sbjct: 214 LSETNFYLGKYYLSLGDLDSATALFKLAVANN--------VHNFVEHRYALLELSLLGQD 265
Query: 394 EEVERYYQR 402
++ +
Sbjct: 266 QDDLAESDQ 274
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria
translocation, allosteric REG phosphoprotein, TPR
repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae}
PDB: 3fp3_A 3fp4_A 3lca_A
Length = 537
Score = 92.1 bits (229), Expect = 6e-20
Identities = 38/327 (11%), Positives = 76/327 (23%), Gaps = 89/327 (27%)
Query: 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALE------------DLEKTSGKYEAAETLE 259
L I + + A L ++++ +
Sbjct: 240 ENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFF--- 296
Query: 260 DCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDA 319
+ + K + +P+ +Y YK A A
Sbjct: 297 --------KFFQ-----KAVDL-------NPEYPPTYYHRGQMYFILQDYKNAKEDFQKA 336
Query: 320 LTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQ 379
++ + LA L K+GK+ E+E P + +
Sbjct: 337 QSLNPE--------NVYPYIQLACLLYKQGKFTESEAFFNETKLK--------FPTLPEV 380
Query: 380 LNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAE 439
A + ++ ++ + Y A + + K + K
Sbjct: 381 PTFFAEILTDRGDFDTAIKQYDIAKRL--------EEVQEKIHVGIGPLIGKATILARQ- 431
Query: 440 ILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVA 499
+ + K K +A E+ D
Sbjct: 432 ---------------------SSQDPTQLDEEKFNAAIKLLTKACEL--------DPRSE 462
Query: 500 KTKNNLASCYLKQGKYKEAEILYKQVL 526
+ K LA L+ K EA L++
Sbjct: 463 QAKIGLAQLKLQMEKIDEAIELFEDSA 489
Score = 87.5 bits (217), Expect = 2e-18
Identities = 40/336 (11%), Positives = 95/336 (28%), Gaps = 55/336 (16%)
Query: 219 HNLVIQYASQGRYEVAVPLCKQALE-------------DLEKTSGKY-EAAETLEDCALR 264
N+ Y S G E + +ALE ++ G + +A L +L
Sbjct: 63 SNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLN 122
Query: 265 SRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIRE 324
+ I + + + +++ + V + + L +
Sbjct: 123 GDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSS 182
Query: 325 KTLGENHAAVAATLNN---------LAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPD 375
N+ A L++ ++ + L +
Sbjct: 183 VNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDD-PLREN 241
Query: 376 VAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKY 435
A L + ++ + + Q ++ ++ P + LA +
Sbjct: 242 AALALCYTGIFHFLKNNLLDAQVLLQESINLH-----PT----PNSYIFLALTLADKENS 292
Query: 436 KEAEILYKQVLTRAHEREFGACDGDNKPIWQDR-----QKNKAKNREKYYQRALEIYELK 490
+E +++ + + + P + R KN ++ +Q+A +
Sbjct: 293 QEFFKFFQKAV---------DLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL---- 339
Query: 491 LGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
+ LA KQGK+ E+E + +
Sbjct: 340 ----NPENVYPYIQLACLLYKQGKFTESEAFFNETK 371
Score = 86.3 bits (214), Expect = 4e-18
Identities = 27/306 (8%), Positives = 85/306 (27%), Gaps = 35/306 (11%)
Query: 224 QYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILG 283
+ + A+ + + L E + + T ++ +
Sbjct: 132 PMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDT 191
Query: 284 SGGHDHPDVATMLN-ILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLA 342
+ + + + + ++ ++ + L+ A L
Sbjct: 192 AYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDD-PLRENAALALCYTG 250
Query: 343 VLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQR 402
+ + + +A+ L + ++ + LAL ++ +E +++Q+
Sbjct: 251 IFHFLKNNLLDAQVLLQESINLHPT---------PNSYIFLALTLADKENSQEFFKFFQK 301
Query: 403 ALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNK 462
A+++ + T + Y YK A+ +++ + + +N
Sbjct: 302 AVDL--------NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQ---------SLNPENV 344
Query: 463 PIWQDRQKNKAKNREKYYQRALEIYE--LKLGPDDSNVAKTKNNLASCYLKQGKYKEAEI 520
+ Q ++ + + + P + A +G + A
Sbjct: 345 YPY--IQLACLLYKQGKFTESEAFFNETKLKFPTL---PEVPTFFAEILTDRGDFDTAIK 399
Query: 521 LYKQVL 526
Y
Sbjct: 400 QYDIAK 405
Score = 84.4 bits (209), Expect = 2e-17
Identities = 33/227 (14%), Positives = 59/227 (25%), Gaps = 36/227 (15%)
Query: 308 KYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367
+ + + A A L N + + EA + A+E+
Sbjct: 2 SHMNGEPDIAQLKGLSP----SQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIEL--- 54
Query: 368 VLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLAS 427
P+ +N++ + E+V + +ALEI + +K AS
Sbjct: 55 -----DPNEPVFYSNISACYISTGDLEKVIEFTTKALEI--------KPDHSKALLRRAS 101
Query: 428 CYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIY 487
G + +A + D D I ++N K K L
Sbjct: 102 ANESLGNFTDAMFDLSVLSLNG--------DFDGASIEPMLERNLNKQAMKVLNENLSKD 153
Query: 488 ELKLGPDDSNVAKTKNNLAS--------CYLKQGKYKEAEILYKQVL 526
E + + + Y A L L
Sbjct: 154 EGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDAL 200
Score = 73.2 bits (180), Expect = 7e-14
Identities = 28/238 (11%), Positives = 56/238 (23%), Gaps = 22/238 (9%)
Query: 289 HPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKR 348
P+ + ++ Y ++ AL I+ + L A
Sbjct: 55 DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD--------HSKALLRRASANESL 106
Query: 349 GKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYE 408
G + +A + P + + LN A+ N E + + R ++
Sbjct: 107 GNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLN----ENLSKDEGRGSQVLP 162
Query: 409 LKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDR 468
+ S Y A L L
Sbjct: 163 SNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDAL---------QRLYSATDEGYLV 213
Query: 469 QKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
+ Y L P N A + + +A++L ++ +
Sbjct: 214 ANDLLTKSTDMYHSLLSANT-VDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESI 270
Score = 69.4 bits (170), Expect = 1e-12
Identities = 28/177 (15%), Positives = 51/177 (28%), Gaps = 58/177 (32%)
Query: 349 GKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYE 408
G + EP + + + A QL N + E +YYQ A+E+
Sbjct: 1 GSHMNGEPDIAQLKGLSPS----QRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIEL-- 54
Query: 409 LKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDR 468
D N +N+++CY+ G ++
Sbjct: 55 ------DPNEPVFYSNISACYISTGDLEKV------------------------------ 78
Query: 469 QKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQV 525
++ +ALEI + +K AS G + +A +
Sbjct: 79 --------IEFTTKALEI--------KPDHSKALLRRASANESLGNFTDAMFDLSVL 119
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR
protein, peroxin 5, PEX5, PTS1 binding domain,
protein-peptide complex, receptor; 2.00A {Trypanosoma
brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Length = 327
Score = 89.3 bits (222), Expect = 9e-20
Identities = 34/239 (14%), Positives = 54/239 (22%), Gaps = 43/239 (17%)
Query: 299 LALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLC 358
L EAA +L + + K A
Sbjct: 27 EGLSMLKLANLAEAALAFEAVCQAAP-----EREEA---WRSLGLTQAENEKDGLAIIAL 78
Query: 359 KRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI-------YELKL 411
A + P LA+ N+ + L + L
Sbjct: 79 NHARMLD--------PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNL 130
Query: 412 GPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKN 471
D + + +Y+E L L P +
Sbjct: 131 QADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM-------------NPNDAQLHAS 177
Query: 472 K--AKNREKYYQRALEIYE--LKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
N Y A ++L PDD A+ N L + + +EA Y + L
Sbjct: 178 LGVLYNLSNNYDSAAANLRRAVELRPDD---AQLWNKLGATLANGNRPQEALDAYNRAL 233
Score = 88.9 bits (221), Expect = 1e-19
Identities = 42/249 (16%), Positives = 72/249 (28%), Gaps = 45/249 (18%)
Query: 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRG 349
P+ L L + K A LN A + AV LAV +
Sbjct: 52 PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-----PKDIAV---HAALAVSHTNEH 103
Query: 350 KYKEAEPLCKRALEIREK-------VLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQR 402
A + L + + L + + + ++Y E
Sbjct: 104 NANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHA 163
Query: 403 ALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNK 462
ALE+ P+D A+ +L Y Y A ++ + D+
Sbjct: 164 ALEMN-----PND---AQLHASLGVLYNLSNNYDSAAANLRRAV---------ELRPDDA 206
Query: 463 PIWQDR---QKNKAKNRE--KYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKE 517
+W N + +E Y RAL+I + + N+A Y +Y
Sbjct: 207 QLWNKLGATLANGNRPQEALDAYNRALDI--------NPGYVRVMYNMAVSYSNMSQYDL 258
Query: 518 AEILYKQVL 526
A + +
Sbjct: 259 AAKQLVRAI 267
Score = 86.6 bits (215), Expect = 8e-19
Identities = 52/290 (17%), Positives = 92/290 (31%), Gaps = 53/290 (18%)
Query: 219 HNLVIQYASQGRYEVAVPLCKQALE----DLE---------KTSGKYEAAETLEDCALRS 265
+L + A + +A+ A D+ AA L S
Sbjct: 59 RSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLS 118
Query: 266 RKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREK 325
+ + + A + + + + N+Y+E LL+ AL +
Sbjct: 119 QPQYEQLGSVNLQADVDIDDLN--------VQSEDFFFAAPNEYRECRTLLHAALEMN-- 168
Query: 326 TLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLAL 385
N A + +L VLY Y A +RA+E+R PD A+ N L
Sbjct: 169 ---PNDAQL---HASLGVLYNLSNNYDSAAANLRRAVELR--------PDDAQLWNKLGA 214
Query: 386 LCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQV 445
N ++ +E Y RAL+I + + N+A Y +Y A +
Sbjct: 215 TLANGNRPQEALDAYNRALDI--------NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRA 266
Query: 446 LT---RAHEREFGACDGDNKPIWQDRQK-----NKAKNREKYYQRALEIY 487
+ A + +W + N+ E Y + +E +
Sbjct: 267 IYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPF 316
Score = 82.3 bits (204), Expect = 2e-17
Identities = 25/206 (12%), Positives = 47/206 (22%), Gaps = 29/206 (14%)
Query: 329 ENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQ 388
N + K EA + + P+ + +L L
Sbjct: 15 NNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAA--------PEREEAWRSLGLTQA 66
Query: 389 NQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 448
K A + D LA + + A + L
Sbjct: 67 ENEKDGLAIIALNHARML--------DPKDIAVHAALAVSHTNEHNANAALASLRAWLLS 118
Query: 449 ------AHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYE--LKLGPDDSNVAK 500
A + Q + Y+ + L++ P+D A+
Sbjct: 119 QPQYEQLGSVNLQADVDIDDLNVQSE--DFFFAAPNEYRECRTLLHAALEMNPND---AQ 173
Query: 501 TKNNLASCYLKQGKYKEAEILYKQVL 526
+L Y Y A ++ +
Sbjct: 174 LHASLGVLYNLSNNYDSAAANLRRAV 199
Score = 71.6 bits (176), Expect = 8e-14
Identities = 40/251 (15%), Positives = 82/251 (32%), Gaps = 39/251 (15%)
Query: 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALE----DLEKTSGKYEAAETLEDCALRSRK 267
P + L + + ++ A+ + L + S +A ++D ++S
Sbjct: 86 PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSED 145
Query: 268 ESYDIVKQ--------AKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDA 319
+ + ++ +P+ A + L ++Y N Y AA L A
Sbjct: 146 FFFAAPNEYRECRTLLHAALEM-------NPNDAQLHASLGVLYNLSNNYDSAAANLRRA 198
Query: 320 LTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQ 379
+ +R A N L + +EA RAL+I P +
Sbjct: 199 VELRPD--------DAQLWNKLGATLANGNRPQEALDAYNRALDIN--------PGYVRV 242
Query: 380 LNNLALLCQNQSKYEEVERYYQRALEI---YELKLGPDDSNVAKT-KNNLASCYLKQGKY 435
+ N+A+ N S+Y+ + RA+ + G ++ + +
Sbjct: 243 MYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRP 302
Query: 436 KEAEILYKQVL 446
E+ Y Q +
Sbjct: 303 DLVELTYAQNV 313
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase
110 kDa subunit...; thiocarbamate crosslink, covalent
inhibitor, gylcosyltransfe inhibitor, O-GLCNAC
transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A*
3pe4_A*
Length = 723
Score = 91.0 bits (225), Expect = 2e-19
Identities = 51/245 (20%), Positives = 86/245 (35%), Gaps = 37/245 (15%)
Query: 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRG 349
P A LN LA + R+Q +EA L AL + + AA +NLA + ++G
Sbjct: 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE--------FAAAHSNLASVLQQQG 57
Query: 350 KYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYEL 409
K +EA K A+ I P A +N+ + + + Y RA++I
Sbjct: 58 KLQEALMHYKEAIRIS--------PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI--- 106
Query: 410 KLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQ 469
+ A +NLAS + G EA Y+ L + C N +
Sbjct: 107 -----NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYC---NL-AHCLQI 157
Query: 470 KNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRA 529
+ ++ ++ + I D KN L S + +++ +
Sbjct: 158 VCDWTDYDERMKKLVSI-----VAD----QLEKNRLPSVHPHHSMLYPLSHGFRKAIAER 208
Query: 530 HEREF 534
H
Sbjct: 209 HGNLC 213
Score = 80.2 bits (197), Expect = 5e-16
Identities = 50/323 (15%), Positives = 92/323 (28%), Gaps = 75/323 (23%)
Query: 218 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAK 277
L+NL QG E AV L ++ALE
Sbjct: 12 LNNLANIKREQGNIEEAVRLYRKALEV--------------------------------- 38
Query: 278 VAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAAT 337
P+ A + LA V + Q K +EA +A+ I A
Sbjct: 39 -----------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF--------ADA 79
Query: 338 LNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVE 397
+N+ + + A RA++I P A +NLA + ++ E
Sbjct: 80 YSNMGNTLKEMQDVQGALQCYTRAIQIN--------PAFADAHSNLASIHKDSGNIPEAI 131
Query: 398 RYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGAC 457
Y+ AL++ + NLA C + + + K++++ ++
Sbjct: 132 ASYRTALKL--------KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNR 183
Query: 458 DGDNKPIW-------QDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYL 510
P +K A+ + + ++ + L Y+
Sbjct: 184 LPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVGYV 243
Query: 511 KQGKYKEAEILYKQVLTRAHERE 533
Q + H +
Sbjct: 244 SSDFGNHPTSHLMQSIPGMHNPD 266
Score = 61.0 bits (147), Expect = 5e-10
Identities = 36/243 (14%), Positives = 65/243 (26%), Gaps = 69/243 (28%)
Query: 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYD 271
P NL QG+ + A+ K+A+
Sbjct: 40 PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---------------------------- 71
Query: 272 IVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENH 331
P A + + ++ + A A+ I
Sbjct: 72 ----------------ISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQIN-------- 107
Query: 332 AAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQS 391
A A +NLA ++ G EA + AL+++ PD NLA Q
Sbjct: 108 PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK--------PDFPDAYCNLAHCLQIVC 159
Query: 392 KYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451
+ + + ++ + I D KN L S + +++ + H
Sbjct: 160 DWTDYDERMKKLVSI-----VAD----QLEKNRLPSVHPHHSMLYPLSHGFRKAIAERHG 210
Query: 452 REF 454
Sbjct: 211 NLC 213
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone,
endoplasmic reticulum, TPR repeat, UNF protein response;
2.51A {Mus musculus}
Length = 359
Score = 88.5 bits (220), Expect = 3e-19
Identities = 33/200 (16%), Positives = 62/200 (31%), Gaps = 29/200 (14%)
Query: 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYE 394
L G+ +A A++ PD A + K +
Sbjct: 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD--------PDNYIAYYRRATVFLAMGKSK 54
Query: 395 EVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL------TR 448
+ + + + + LKQGK EAE +K+VL
Sbjct: 55 AALPDLTKVIAL--------KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQE 106
Query: 449 AHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYE--LKLGPDDSNVAKTKNNLA 506
E E D + + + + Y A+ + L++ D A+ + A
Sbjct: 107 EKEAESQLVKADEMQRLRSQALDAFDGAD--YTAAITFLDKILEVCVWD---AELRELRA 161
Query: 507 SCYLKQGKYKEAEILYKQVL 526
C++K+G+ ++A K
Sbjct: 162 ECFIKEGEPRKAISDLKAAS 181
Score = 88.1 bits (219), Expect = 4e-19
Identities = 50/331 (15%), Positives = 98/331 (29%), Gaps = 57/331 (17%)
Query: 217 TLHNLVIQYASQGRYEVAVPLCKQALE---DLEKT----------SGKYEAAETLEDCAL 263
+ + + G+ + A+P + + D GK + AE L
Sbjct: 39 AYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVL 98
Query: 264 RSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIR 323
+S + K A+ D L AL D Y A L+ L +
Sbjct: 99 KSNPSEQE----EKEAE----SQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC 150
Query: 324 EKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNL 383
A A + K G+ ++A K A +++ D + +
Sbjct: 151 --------VWDAELRELRAECFIKEGEPRKAISDLKAASKLK--------SDNTEAFYKI 194
Query: 384 ALLCQNQSKYEEVERYYQRALEI----YELKLGPDDSNVAKTKNNLASCYLKQGKYKEAE 439
+ L +E + L++ A ++ G+Y +A
Sbjct: 195 STLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDAT 254
Query: 440 ILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAK--NREKYYQRALEIYE--LKLGPDD 495
Y+ V+ + ++ ++++ A+ I L++ PD+
Sbjct: 255 SKYESVMKT---------EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDN 305
Query: 496 SNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
+ A YL + Y EA Y+
Sbjct: 306 ---VNALKDRAEAYLIEEMYDEAIQDYEAAQ 333
Score = 86.9 bits (216), Expect = 8e-19
Identities = 54/282 (19%), Positives = 94/282 (33%), Gaps = 61/282 (21%)
Query: 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRG 349
PD A V+ K K A L + ++ A L K+G
Sbjct: 34 PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD--------FTAARLQRGHLLLKQG 85
Query: 350 KYKEAEPLCKRALEIR------EKVLGK-EHPDVAKQLNNLALLCQNQSKYEEVERYYQR 402
K EAE K+ L+ ++ + D ++L + AL + + Y + +
Sbjct: 86 KLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDK 145
Query: 403 ALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL------TRAH------ 450
LE+ A+ + A C++K+G+ ++A K T A
Sbjct: 146 ILEV--------CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTL 197
Query: 451 EREFG-------------ACDGDNKPIWQDRQKNKAKNREKY----------YQRALEIY 487
+ G D D+K + ++ K N+ Y A Y
Sbjct: 198 YYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKY 257
Query: 488 E--LKLGPDDSNV-AKTKNNLASCYLKQGKYKEAEILYKQVL 526
E +K P + ++K + C+ K K EA + +VL
Sbjct: 258 ESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVL 299
Score = 82.3 bits (204), Expect = 3e-17
Identities = 30/240 (12%), Positives = 73/240 (30%), Gaps = 39/240 (16%)
Query: 296 LNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAE 355
L + +A + + A+ A ++ GK K A
Sbjct: 6 HLELGKKLLAAGQLADALSQFHAAVDGDPDN--------YIAYYRRATVFLAMGKSKAAL 57
Query: 356 PLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI-------YE 408
P + + ++ D L Q K +E E +++ L+ E
Sbjct: 58 PDLTKVIALK--------MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKE 109
Query: 409 LKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDR 468
+ ++ + + A Y A ++L + + + R
Sbjct: 110 AESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKIL---------EVCVWDAELRELR 160
Query: 469 QKNKAKNREKYYQRALEIYE--LKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
+ +E ++A+ + KL D+ + +++ Y + G ++ + ++ L
Sbjct: 161 --AECFIKEGEPRKAISDLKAASKLKSDN---TEAFYKISTLYYQLGDHELSLSEVRECL 215
Score = 70.0 bits (172), Expect = 4e-13
Identities = 31/239 (12%), Positives = 63/239 (26%), Gaps = 44/239 (18%)
Query: 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALE-------------DLEKTSGKYEAAETL 258
+ +G A+ K A + L G +E + +
Sbjct: 151 VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSE 210
Query: 259 EDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLND 318
L+ ++ K + L L A +Y +A +
Sbjct: 211 VRECLKLDQDHKRCFAHYKQVKKLNK-----------LIESAEELIRDGRYTDATSKYES 259
Query: 319 ALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAK 378
+ + + + K K EA +C L++ PD
Sbjct: 260 VMKTE----PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME--------PDNVN 307
Query: 379 QLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKE 437
L + A + Y+E + Y+ A E + N + + L + ++
Sbjct: 308 ALKDRAEAYLIEEMYDEAIQDYEAAQEH--------NENDQQIREGLEKAQRLLKQSQK 358
Score = 65.4 bits (160), Expect = 1e-11
Identities = 39/299 (13%), Positives = 91/299 (30%), Gaps = 47/299 (15%)
Query: 193 LSPTPPSQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALE-DLEKTSGK 251
L P Q ++ + ++ L + + Y A+ + LE + +
Sbjct: 98 LKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELR 157
Query: 252 YEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKE 311
AE +++ +K A +++ D ++ +Y ++
Sbjct: 158 ELRAECFI--KEGEPRKAISDLKAA--SKL-------KSDNTEAFYKISTLYYQLGDHEL 206
Query: 312 AANLLNDALTI----REKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367
+ + + + L + + L A + G+Y +A + ++
Sbjct: 207 SLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--- 263
Query: 368 VLGKEHPDVA----KQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKN 423
P VA + + K E R L++ + +
Sbjct: 264 -----EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM--------EPDNVNALK 310
Query: 424 NLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQR 482
+ A YL + Y EA Y+ + +++ I + + KA+ K Q+
Sbjct: 311 DRAEAYLIEEMYDEAIQDYEAAQ---------EHNENDQQIREGLE--KAQRLLKQSQK 358
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A
{Thermus thermophilus}
Length = 217
Score = 84.1 bits (209), Expect = 1e-18
Identities = 39/248 (15%), Positives = 56/248 (22%), Gaps = 58/248 (23%)
Query: 299 LALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLC 358
L + +Y A L AL L LA K G A
Sbjct: 11 LGVQLYALGRYDAALTLFERALKENP-----QDPEA---LYWLARTQLKLGLVNPALENG 62
Query: 359 KRALEIREKVLGKEHPDVAKQLNNLA-----------LLCQNQSKYEEVERYYQRALEIY 407
K + P L+ + + E+ + A +
Sbjct: 63 KTLVART--------PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV- 113
Query: 408 ELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQD 467
+ A Y G+ +AE KQ L D I
Sbjct: 114 -------NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE----------DTPEIRSA 156
Query: 468 R-----QKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILY 522
+ Y +ALE + AS L +GK +EA
Sbjct: 157 LAELYLSMGRLDEALAQYAKALEQ--------APKDLDLRVRYASALLLKGKAEEAARAA 208
Query: 523 KQVLTRAH 530
H
Sbjct: 209 ALEHHHHH 216
Score = 74.9 bits (185), Expect = 1e-15
Identities = 33/204 (16%), Positives = 58/204 (28%), Gaps = 50/204 (24%)
Query: 339 NNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVER 398
L V G+Y A L +RAL+ P + L LA
Sbjct: 9 LRLGVQLYALGRYDAALTLFERALKEN--------PQDPEALYWLARTQLKLGLVNPALE 60
Query: 399 YYQRALEIYELKLGPDDSNVAKTKNNLASCYLK-----------QGKYKEAEILYKQVLT 447
+ + L+ Y+ +G ++A + K
Sbjct: 61 NGKTLVAR--------TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAE- 111
Query: 448 RAHEREFGACDGDNKPIWQDR-----QKNKAKNREKYYQRALEIYELKLGPDDSNVAKTK 502
+ P+ R + E ++AL + +D+ + +
Sbjct: 112 --------RVNPRYAPLHLQRGLVYALLGERDKAEASLKQALAL-------EDT--PEIR 154
Query: 503 NNLASCYLKQGKYKEAEILYKQVL 526
+ LA YL G+ EA Y + L
Sbjct: 155 SALAELYLSMGRLDEALAQYAKAL 178
Score = 74.1 bits (183), Expect = 2e-15
Identities = 45/255 (17%), Positives = 80/255 (31%), Gaps = 72/255 (28%)
Query: 220 NLVIQYASQGRYEVAVPLCKQALE-------------DLEKTSGKYEAAETLEDCALRSR 266
L +Q + GRY+ A+ L ++AL+ + G A
Sbjct: 10 RLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPAL---------- 59
Query: 267 KESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVY-----------RDQNKYKEAANL 315
E+ + P +L+ Y R + ++A ++
Sbjct: 60 -ENGK-----TLVAR-------TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSV 106
Query: 316 LNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPD 375
L DA + +A + ++Y G+ +AE K+AL + D
Sbjct: 107 LKDAERVNP-----RYAPL---HLQRGLVYALLGERDKAEASLKQALALE---------D 149
Query: 376 VAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKY 435
+ + LA L + + +E Y +ALE + AS L +GK
Sbjct: 150 TPEIRSALAELYLSMGRLDEALAQYAKALEQ--------APKDLDLRVRYASALLLKGKA 201
Query: 436 KEAEILYKQVLTRAH 450
+EA H
Sbjct: 202 EEAARAAALEHHHHH 216
Score = 64.9 bits (159), Expect = 4e-12
Identities = 29/164 (17%), Positives = 50/164 (30%), Gaps = 31/164 (18%)
Query: 374 PDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQG 433
+ L + +Y+ ++RAL+ P D + LA LK G
Sbjct: 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-----PQD---PEALYWLARTQLKLG 53
Query: 434 KYKEAEILYKQVLTRAHEREFGACDGDNKPIW---------QDRQKNKAKNREKYYQRAL 484
A K ++ A + RQ + + Y ++AL
Sbjct: 54 LVNPALENGKTLV---------ARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQAL 104
Query: 485 EIYE--LKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
+ + ++ P A Y G+ +AE KQ L
Sbjct: 105 SVLKDAERVNPRY---APLHLQRGLVYALLGERDKAEASLKQAL 145
Score = 61.8 bits (151), Expect = 4e-11
Identities = 35/220 (15%), Positives = 52/220 (23%), Gaps = 71/220 (32%)
Query: 219 HNLVIQYASQGRYEVAVPLCKQALE------------------------DLEKTSGKYEA 254
+ L G A+ K + D E+ G E
Sbjct: 43 YWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQ 102
Query: 255 AETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAAN 314
A ++ +P A + LVY + +A
Sbjct: 103 AL-----------SVLK-----DAERV-------NPRYAPLHLQRGLVYALLGERDKAEA 139
Query: 315 LLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHP 374
L AL + + + LA LY G+ EA +ALE P
Sbjct: 140 SLKQALALEDT---------PEIRSALAELYLSMGRLDEALAQYAKALEQA--------P 182
Query: 375 DVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPD 414
A + K EE A L+
Sbjct: 183 KDLDLRVRYASALLLKGKAEE-------AARAAALEHHHH 215
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A
{Saccharomyces cerevisiae}
Length = 258
Score = 84.5 bits (210), Expect = 1e-18
Identities = 32/239 (13%), Positives = 71/239 (29%), Gaps = 42/239 (17%)
Query: 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRG 349
+A + ++ EA N A + + + LNN A ++G
Sbjct: 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELHK-----DITY----LNNRAAAEYEKG 52
Query: 350 KYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYEL 409
+Y+ A A+E ++ ++ ++ +E Y
Sbjct: 53 EYETAISTLNDAVEQG--------REMRADYKVISKSFARIGNAYHKLGDLKKTIEYY-- 102
Query: 410 KLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQ 469
T++ A K ++ + + + R
Sbjct: 103 ---QKSL----TEHRTADILTKLRNAEKELKKAEAEA---------YVNPEKAEEA--RL 144
Query: 470 KNKAKNREKYYQRALEIYE--LKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
+ K + + A++ Y +K P+D A+ +N A+ K + EA + +
Sbjct: 145 EGKEYFTKSDWPNAVKAYTEMIKRAPED---ARGYSNRAAALAKLMSFPEAIADCNKAI 200
Score = 81.4 bits (202), Expect = 1e-17
Identities = 29/240 (12%), Positives = 74/240 (30%), Gaps = 42/240 (17%)
Query: 289 HPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKR 348
H D+ + N A ++ +Y+ A + LNDA+ + + A ++ + +
Sbjct: 35 HKDITYLNN-RAAAEYEKGEYETAISTLNDAVEQGRE--------MRADYKVISKSFARI 85
Query: 349 GKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYE 408
G K+ +E +K + + A + E+ + + +
Sbjct: 86 GNAYHKLGDLKKTIEYYQK---------SLTEHRTADILTKLRNAEKELKKAEAEAYV-- 134
Query: 409 LKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDR 468
+ A+ Y + + A Y +++ R ++ + +R
Sbjct: 135 ------NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR---------APEDARGYSNR 179
Query: 469 QKNKAKNREKYYQRALEIYE--LKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
A + + A+ ++ P+ + A+ + +Y A
Sbjct: 180 --AAALAKLMSFPEAIADCNKAIEKDPNF---VRAYIRKATAQIAVKEYASALETLDAAR 234
Score = 71.0 bits (175), Expect = 6e-14
Identities = 28/196 (14%), Positives = 60/196 (30%), Gaps = 34/196 (17%)
Query: 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYE 394
A + K ++ EA +A E+ H D+ LNN A + +YE
Sbjct: 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWEL--------HKDIT-YLNNRAAAEYEKGEYE 55
Query: 395 EVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREF 454
A+E + ++ + + G K+ +
Sbjct: 56 TAISTLNDAVEQ--------GREMRADYKVISKSFARIGNAYHKLGDLKKTIEY------ 101
Query: 455 GACDGDNKPIWQDRQKNKAKNREKYYQRALEIYE--LKLGPDDSNVAKTKNNLASCYLKQ 512
K + + R + + + ++ L+ E + P+ + A Y +
Sbjct: 102 -----YQKSLTEHRTAD-ILTKLRNAEKELKKAEAEAYVNPEKAEEA---RLEGKEYFTK 152
Query: 513 GKYKEAEILYKQVLTR 528
+ A Y +++ R
Sbjct: 153 SDWPNAVKAYTEMIKR 168
Score = 68.0 bits (167), Expect = 6e-13
Identities = 26/242 (10%), Positives = 50/242 (20%), Gaps = 61/242 (25%)
Query: 218 LHNLVIQYASQGRYEVAVPLCKQALE-------------DLEKTSGKYEAAETLEDCALR 264
L+N +G YE A+ A+E G
Sbjct: 41 LNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKL-------- 92
Query: 265 SRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIRE 324
+ T A + ++ +
Sbjct: 93 ---GDLKKTIEYY------------QKSLTEHR-TADILTKLRNAEKELKKAEAEAYVNP 136
Query: 325 KTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLA 384
+ A Y + + A ++ P+ A+ +N A
Sbjct: 137 E--------KAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--------APEDARGYSNRA 180
Query: 385 LLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQ 444
+ E +A+E D N + A+ + +Y A
Sbjct: 181 AALAKLMSFPEAIADCNKAIEK--------DPNFVRAYIRKATAQIAVKEYASALETLDA 232
Query: 445 VL 446
Sbjct: 233 AR 234
Score = 50.2 bits (121), Expect = 4e-07
Identities = 23/220 (10%), Positives = 44/220 (20%), Gaps = 68/220 (30%)
Query: 217 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQA 276
T H E + +
Sbjct: 107 TEHRTADILTKLRNAEKELKKAEAEAY--------------------------------- 133
Query: 277 KVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAA 336
+P+ A + Y ++ + A + + + A
Sbjct: 134 -----------VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED--------AR 174
Query: 337 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEV 396
+N A K + EA C +A+E P+ + A +Y
Sbjct: 175 GYSNRAAALAKLMSFPEAIADCNKAIEKD--------PNFVRAYIRKATAQIAVKEYASA 226
Query: 397 ERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYK 436
A D+ V + L +
Sbjct: 227 LETLDAARTK--------DAEVNNGSSAREIDQLYYKASQ 258
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex,
tetratricopeptide repeat, TPR, helical repeat, signaling
protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB:
2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Length = 368
Score = 85.9 bits (213), Expect = 2e-18
Identities = 48/330 (14%), Positives = 90/330 (27%), Gaps = 79/330 (23%)
Query: 219 HNLVIQYASQGRYEVAVPLCKQALE----DLE---------KTSGKYEAAETLEDCALRS 265
L A + +A+ ++ LE + A + LR
Sbjct: 102 QYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRY 161
Query: 266 RKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREK 325
+V A+ G + ++L + + E L A+ +
Sbjct: 162 TPAYAHLVTPAEEGAGGAGLGPSKRILGSLL--------SDSLFLEVKELFLAAVRLDPT 213
Query: 326 TLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLAL 385
+ L VL+ G+Y +A AL +R P+ N L
Sbjct: 214 S------IDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--------PNDYLLWNKLGA 259
Query: 386 LCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQV 445
N ++ EE Y+RALE+ +++ NL + G ++EA + +
Sbjct: 260 TLANGNQSEEAVAAYRRALEL--------QPGYIRSRYNLGISCINLGAHREAVEHFLEA 311
Query: 446 LTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNL 505
L + K+R + + + L
Sbjct: 312 L-----------------------NMQRKSRGPRGEGGAMSENI------------WSTL 336
Query: 506 ASCYLKQGKYKEAEILYKQVLTRAHEREFG 535
G+ + L+ FG
Sbjct: 337 RLALSMLGQSDAYGAADARDLS-TLLTMFG 365
Score = 85.5 bits (212), Expect = 3e-18
Identities = 38/250 (15%), Positives = 77/250 (30%), Gaps = 45/250 (18%)
Query: 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRG 349
P L + + A + L L ++ L LAV +
Sbjct: 95 PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD--------NQTALMALAVSFTNES 146
Query: 350 KYKEAEPLCKRALEIREK--------VLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQ 401
++A + + L G + L L + S + EV+ +
Sbjct: 147 LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSL-LSDSLFLEVKELFL 205
Query: 402 RALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDN 461
A+ + P + + L + G+Y +A + L + ++
Sbjct: 206 AAVRLD-----PTSID-PDVQCGLGVLFNLSGEYDKAVDCFTAAL---------SVRPND 250
Query: 462 KPIWQDR---QKNKAKNRE--KYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYK 516
+W N ++ E Y+RALE+ +++ NL + G ++
Sbjct: 251 YLLWNKLGATLANGNQSEEAVAAYRRALEL--------QPGYIRSRYNLGISCINLGAHR 302
Query: 517 EAEILYKQVL 526
EA + + L
Sbjct: 303 EAVEHFLEAL 312
Score = 84.7 bits (210), Expect = 6e-18
Identities = 43/264 (16%), Positives = 83/264 (31%), Gaps = 50/264 (18%)
Query: 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAA----------- 336
D+ D+ + + ++N ++ + L + G+ AV
Sbjct: 40 DYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQ--EGDLPNAVLLFEAAVQQDPKH 97
Query: 337 --TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYE 394
L + + A +R LE++ PD L LA+ N+S
Sbjct: 98 MEAWQYLGTTQAENEQELLAISALRRCLELK--------PDNQTALMALAVSFTNESLQR 149
Query: 395 EVERYYQRALEI--------YELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 446
+ + L + G + + +K L S L + E + L+ +
Sbjct: 150 QACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGS-LLSDSLFLEVKELFLAAV 208
Query: 447 TRAHEREFGACDGDNKPIWQDRQKNK--AKNREKYYQRALEIYE--LKLGPDDSNVAKTK 502
D + I D Q N Y +A++ + L + P+D
Sbjct: 209 ---------RLDPTS--IDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND---YLLW 254
Query: 503 NNLASCYLKQGKYKEAEILYKQVL 526
N L + + +EA Y++ L
Sbjct: 255 NKLGATLANGNQSEEAVAAYRRAL 278
Score = 79.7 bits (197), Expect = 3e-16
Identities = 37/253 (14%), Positives = 75/253 (29%), Gaps = 37/253 (14%)
Query: 218 LHNLVIQYASQGRYEVAVPLCKQALE----------DLEKTSGKYEAAETLEDCALRSRK 267
L L + + ++ A + + L E+ +G +
Sbjct: 135 LMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194
Query: 268 ESYDIVKQA--KVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREK 325
+ VK+ ++ D + L +++ +Y +A + AL++R
Sbjct: 195 SLFLEVKELFLAAVRL----DPTSID-PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN 249
Query: 326 TLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLAL 385
N L + +EA +RALE++ P + NL +
Sbjct: 250 --------DYLLWNKLGATLANGNQSEEAVAAYRRALELQ--------PGYIRSRYNLGI 293
Query: 386 LCQNQSKYEEVERYYQRALEI---YELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILY 442
C N + E ++ AL + G + + L G+
Sbjct: 294 SCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAAD 353
Query: 443 KQVLTRAHEREFG 455
+ L+ FG
Sbjct: 354 ARDLS-TLLTMFG 365
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat,
consensus protein, superhelix, de novo protein; 2.30A
{Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Length = 136
Score = 80.5 bits (200), Expect = 3e-18
Identities = 46/150 (30%), Positives = 61/150 (40%), Gaps = 24/150 (16%)
Query: 297 NILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEP 356
L Y Q Y EA AL + ++ A NL Y K+G Y EA
Sbjct: 5 YNLGNAYYKQGDYDEAIEYYQKALELDPRS--------AEAWYNLGNAYYKQGDYDEAIE 56
Query: 357 LCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDS 416
++ALE+ P A+ NL Q Y+E YYQ+ALE+ D
Sbjct: 57 YYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DP 100
Query: 417 NVAKTKNNLASCYLKQGKYKEAEILYKQVL 446
A+ NL + Y KQG Y EA Y++ L
Sbjct: 101 RSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130
Score = 77.8 bits (193), Expect = 2e-17
Identities = 55/192 (28%), Positives = 72/192 (37%), Gaps = 62/192 (32%)
Query: 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYE 394
A NL Y K+G Y EA ++ALE+ P A+ NL Q Y+
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYD 52
Query: 395 EVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREF 454
E YYQ+ALE+ D A+ NL + Y KQG Y EA
Sbjct: 53 EAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEA---------------- 88
Query: 455 GACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGK 514
+YYQ+ALE+ D A+ NL + Y KQG
Sbjct: 89 ----------------------IEYYQKALEL--------DPRSAEAWYNLGNAYYKQGD 118
Query: 515 YKEAEILYKQVL 526
Y EA Y++ L
Sbjct: 119 YDEAIEYYQKAL 130
Score = 62.4 bits (153), Expect = 5e-12
Identities = 35/118 (29%), Positives = 46/118 (38%), Gaps = 16/118 (13%)
Query: 289 HPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKR 348
P A L Y Q Y EA AL + ++ A NL Y K+
Sbjct: 31 DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS--------AEAWYNLGNAYYKQ 82
Query: 349 GKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406
G Y EA ++ALE+ P A+ NL Q Y+E YYQ+ALE+
Sbjct: 83 GDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132
Score = 37.4 bits (88), Expect = 0.003
Identities = 32/146 (21%), Positives = 44/146 (30%), Gaps = 52/146 (35%)
Query: 219 HNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKV 278
+NL Y QG Y+ A+ ++ALE
Sbjct: 39 YNLGNAYYKQGDYDEAIEYYQKALE----------------------------------- 63
Query: 279 AQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATL 338
P A L Y Q Y EA AL + ++ A
Sbjct: 64 ---------LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS--------AEAW 106
Query: 339 NNLAVLYGKRGKYKEAEPLCKRALEI 364
NL Y K+G Y EA ++ALE+
Sbjct: 107 YNLGNAYYKQGDYDEAIEYYQKALEL 132
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat,
TPR; 3.00A {Mus musculus}
Length = 365
Score = 83.2 bits (206), Expect = 2e-17
Identities = 38/247 (15%), Positives = 71/247 (28%), Gaps = 44/247 (17%)
Query: 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRG 349
P A L + + + A L L ++ N+ L LAV Y
Sbjct: 96 PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-----PNNLKA---LMALAVSYTNTS 147
Query: 350 KYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYE- 408
++A K ++ +P + N + + + E
Sbjct: 148 HQQDACEALKNWIKQ--------NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKEL 199
Query: 409 ----LKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPI 464
D + + L + G++ A + L ++ +
Sbjct: 200 YLEAAHQNGDMID-PDLQTGLGVLFHLSGEFNRAIDAFNAAL---------TVRPEDYSL 249
Query: 465 WQDR---QKNKAKNRE--KYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAE 519
W N ++ E + Y RALEI +++ NL + G Y+EA
Sbjct: 250 WNRLGATLANGDRSEEAVEAYTRALEI--------QPGFIRSRYNLGISCINLGAYREAV 301
Query: 520 ILYKQVL 526
+ L
Sbjct: 302 SNFLTAL 308
Score = 80.5 bits (199), Expect = 1e-16
Identities = 37/295 (12%), Positives = 85/295 (28%), Gaps = 39/295 (13%)
Query: 249 SGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNK 308
+ ++E A+ + + ++ + V + + +N
Sbjct: 2 AMEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENP 61
Query: 309 YKEAANLLNDALTIREKTLGENHAAVAA-------------TLNNLAVLYGKRGKYKEAE 355
+K+ + L + G+ + L + + + A
Sbjct: 62 FKDWPGAFEEGLKRLK--EGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAI 119
Query: 356 PLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDD 415
+R LE++ P+ K L LA+ N S ++ + ++ +
Sbjct: 120 VALQRCLELQ--------PNNLKALMALAVSYTNTSHQQDACEALKNWIKQ--------N 163
Query: 416 SNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNK--A 473
N + ++ + L E A + I D Q
Sbjct: 164 PKYKYLVKNKKGSPGLTRRMSKSPVDSSV-LEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222
Query: 474 KNREKYYQRALEIYE--LKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
+ + RA++ + L + P+D N L + + +EA Y + L
Sbjct: 223 FHLSGEFNRAIDAFNAALTVRPED---YSLWNRLGATLANGDRSEEAVEAYTRAL 274
Score = 79.3 bits (196), Expect = 4e-16
Identities = 45/283 (15%), Positives = 83/283 (29%), Gaps = 57/283 (20%)
Query: 219 HNLVIQYASQGRYEVAVPLCKQALE----DLE---------KTSGKYEAAETLEDCALRS 265
L I A + A+ ++ LE +L+ + + A ++
Sbjct: 103 QFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQ 162
Query: 266 RKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREK 325
+ +VK K + + ++ D + + L +A
Sbjct: 163 NPKYKYLVKNKKGSP-------------GLTRRMSKSPVDSSVLEGVKELYLEAAHQNGD 209
Query: 326 TLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLAL 385
L VL+ G++ A AL +R P+ N L
Sbjct: 210 ------MIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR--------PEDYSLWNRLGA 255
Query: 386 LCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQV 445
N + EE Y RALEI +++ NL + G Y+EA +
Sbjct: 256 TLANGDRSEEAVEAYTRALEI--------QPGFIRSRYNLGISCINLGAYREAVSNFLTA 307
Query: 446 LTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYE 488
L + ++ Q + N + AL + +
Sbjct: 308 L---------SLQRKSRNQQQVPHPAISGNIWAALRIALSLMD 341
Score = 67.0 bits (164), Expect = 3e-12
Identities = 39/245 (15%), Positives = 70/245 (28%), Gaps = 40/245 (16%)
Query: 218 LHNLVIQYASQGRYEVAVPLCKQALE-------------DLEKTSGKYEAAETLEDCALR 264
L L + Y + + A K ++ + + +
Sbjct: 136 LMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEG 195
Query: 265 SRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIRE 324
KE Y + A G D D + L +++ ++ A + N ALT+R
Sbjct: 196 V-KELYL-----EAAHQNG----DMID-PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRP 244
Query: 325 KTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLA 384
+ + N L + +EA RALEI+ P + NL
Sbjct: 245 E--------DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ--------PGFIRSRYNLG 288
Query: 385 LLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQ 444
+ C N Y E + AL + N+ + + L++
Sbjct: 289 ISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQA 348
Query: 445 VLTRA 449
Sbjct: 349 ANLGD 353
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing
protein, structur genomics, joint center for structural
genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Length = 208
Score = 80.2 bits (198), Expect = 2e-17
Identities = 27/202 (13%), Positives = 62/202 (30%), Gaps = 31/202 (15%)
Query: 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIRE--------KVLGKEHPDVAKQLNNLALL 386
+ + G+ +A ++ + + + K +K LAL
Sbjct: 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALA 63
Query: 387 CQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 446
+ Y++ +Y+ L+ N A + +G+ K+A +Y+++L
Sbjct: 64 YKKNRNYDKAYLFYKELLQK--------APNNVDCLEACAEMQVCRGQEKDALRMYEKIL 115
Query: 447 TRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYE--LKLGPDDSNVAKTKNN 504
+ DN N + ++ LE L +
Sbjct: 116 QL---------EADNLAANIFL-GNYYYLTAEQEKKKLETDYKKLSSPTKM---QYARYR 162
Query: 505 LASCYLKQGKYKEAEILYKQVL 526
L +Y++A ++V+
Sbjct: 163 DGLSKLFTTRYEKARNSLQKVI 184
Score = 72.5 bits (178), Expect = 7e-15
Identities = 27/231 (11%), Positives = 61/231 (26%), Gaps = 53/231 (22%)
Query: 217 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQA 276
+ V G+ AV +Q + + E
Sbjct: 6 EMLQKVSAAIEAGQNGQAVSYFRQTIA------LNIDRTE-------------------- 39
Query: 277 KVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAA 336
+ + + + LAL Y+ Y +A + L
Sbjct: 40 --MYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNN--------VD 89
Query: 337 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQS-KYEE 395
L A + RG+ K+A + ++ L++ D L + + ++
Sbjct: 90 CLEACAEMQVCRGQEKDALRMYEKILQL--------EADNLAANIFLGNYYYLTAEQEKK 141
Query: 396 VERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 446
+ L + + + L +Y++A ++V+
Sbjct: 142 KLETDYKKLSS--------PTKMQYARYRDGLSKLFTTRYEKARNSLQKVI 184
Score = 54.8 bits (132), Expect = 9e-09
Identities = 24/235 (10%), Positives = 50/235 (21%), Gaps = 70/235 (29%)
Query: 204 QVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCAL 263
N + L + Y Y+ A K+ L+
Sbjct: 43 WTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ-------------------- 82
Query: 264 RSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIR 323
P+ L A + + + K+A + L +
Sbjct: 83 ------------------------KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE 118
Query: 324 EKTLGENHAAVAATLNNLAVLYGKRG-KYKEAEPLCKRALEIREKVLGKEHPDVAKQLNN 382
A L Y + K+ + L +
Sbjct: 119 ADN--------LAANIFLGNYYYLTAEQEKKKLETDYKKLSS--------PTKMQYARYR 162
Query: 383 LALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKE 437
L ++YE+ Q+ + + P + + L + +
Sbjct: 163 DGLSKLFTTRYEKARNSLQKVILRF-----PST----EAQKTLDKILRIEKEVNR 208
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 83.2 bits (206), Expect = 3e-17
Identities = 36/236 (15%), Positives = 75/236 (31%), Gaps = 44/236 (18%)
Query: 297 NILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEP 356
+ + +N Y ++ + D L G+ +A
Sbjct: 7 HSSGVDLGTENLYFQS---MADV----------------EKHLELGKKLLAAGQLADALS 47
Query: 357 LCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDS 416
A++ PD A + K + + +++
Sbjct: 48 QFHAAVDG--------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL--------KM 91
Query: 417 NVAKTKNNLASCYLKQGKYKEAEILYKQVL----TRAHEREFGACDGDNKPIWQDRQKNK 472
+ + LKQGK EAE +K+VL + E+E + + + + R +
Sbjct: 92 DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQAL 151
Query: 473 AKNREKYYQRALEIYE--LKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
Y A+ + L++ D A+ + A C++K+G+ ++A K
Sbjct: 152 NAFGSGDYTAAIAFLDKILEVCVWD---AELRELRAECFIKEGEPRKAISDLKAAS 204
Score = 82.0 bits (203), Expect = 7e-17
Identities = 55/282 (19%), Positives = 91/282 (32%), Gaps = 61/282 (21%)
Query: 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRG 349
PD A V+ K K A L + ++ AA L K+G
Sbjct: 57 PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD----FTAA----RLQRGHLLLKQG 108
Query: 350 KYKEAEPLCKRALEI-------REKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQR 402
K EAE K+ L+ +E D ++L + AL Y + +
Sbjct: 109 KLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDK 168
Query: 403 ALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT--------------- 447
LE+ A+ + A C++K+G+ ++A K
Sbjct: 169 ILEV--------CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTL 220
Query: 448 ----------RAHEREFGACDGDNKPIWQDRQKNKAKNREKY----------YQRALEIY 487
+ RE D D+K + ++ K N+ Y A Y
Sbjct: 221 YYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKY 280
Query: 488 E--LKLGPDDSNV-AKTKNNLASCYLKQGKYKEAEILYKQVL 526
E +K P + ++K + C+ K K EA + +VL
Sbjct: 281 ESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVL 322
Score = 82.0 bits (203), Expect = 9e-17
Identities = 47/336 (13%), Positives = 97/336 (28%), Gaps = 67/336 (19%)
Query: 217 TLHNLVIQYASQGRYEVAVPLCKQALE---DLEKT----------SGKYEAAETLEDCAL 263
+ + + G+ + A+P + ++ D GK + AE L
Sbjct: 62 AYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVL 121
Query: 264 RSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIR 323
+S + + D L AL Y A L+ L +
Sbjct: 122 KSNPSENEEKEAQSQLI--------KSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC 173
Query: 324 EKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNL 383
A A + K G+ ++A K A +++ D + +
Sbjct: 174 VWD--------AELRELRAECFIKEGEPRKAISDLKAASKLK--------NDNTEAFYKI 217
Query: 384 ALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAK---------TKNNLASCYLKQGK 434
+ L +E + L++ D A ++ G+
Sbjct: 218 STLYYQLGDHELSLSEVRECLKLD-----QDHKRCFAHYKQVKKLNKLIESAEELIRDGR 272
Query: 435 YKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAK--NREKYYQRALEIYE--LK 490
Y +A Y+ V+ + ++ ++++ A+ + L+
Sbjct: 273 YTDATSKYESVM---------KTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQ 323
Query: 491 LGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
+ PD+ + A YL + Y EA Y+
Sbjct: 324 MEPDN---VNALKDRAEAYLIEEMYDEAIQDYETAQ 356
Score = 70.9 bits (174), Expect = 3e-13
Identities = 42/324 (12%), Positives = 85/324 (26%), Gaps = 73/324 (22%)
Query: 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALE-------------DLEKTSGKYEAAETL 258
+ +G A+ K A + L G +E + +
Sbjct: 174 VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSE 233
Query: 259 EDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLND 318
L+ ++ K + L L A +Y +A +
Sbjct: 234 VRECLKLDQDHKRCFAHYKQVKKLNK-----------LIESAEELIRDGRYTDATSKYES 282
Query: 319 ALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAK 378
+ + + + K K EA +C L++ PD
Sbjct: 283 VMKTE----PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--------EPDNVN 330
Query: 379 QLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEA 438
L + A + Y+E + Y+ A E + N + + L + ++
Sbjct: 331 ALKDRAEAYLIEEMYDEAIQDYETAQEH--------NENDQQIREGLEKAQRLLKQSQKR 382
Query: 439 EILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNV 498
+ + R K + + Y + AL+ + PD+
Sbjct: 383 DYYKILGV--------------------KRNAKKQEIIKAYRKLALQWH-----PDN--- 414
Query: 499 AKTKNNLASCYLKQGKYKEA-EIL 521
+ + K A E+L
Sbjct: 415 FQNEEEKKKAEKKFIDIAAAKEVL 438
Score = 48.5 bits (116), Expect = 3e-06
Identities = 22/133 (16%), Positives = 42/133 (31%), Gaps = 22/133 (16%)
Query: 399 YYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACD 458
++ +++ L + L L G+ +A + + D
Sbjct: 6 HHSSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAV---------DGD 56
Query: 459 GDNKPIWQDR-----QKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQG 513
DN + R K+K + +++ + + LKQG
Sbjct: 57 PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL--------KMDFTAARLQRGHLLLKQG 108
Query: 514 KYKEAEILYKQVL 526
K EAE +K+VL
Sbjct: 109 KLDEAEDDFKKVL 121
Score = 31.6 bits (72), Expect = 0.67
Identities = 5/50 (10%), Positives = 15/50 (30%)
Query: 477 EKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
++ +++ L + L L G+ +A + +
Sbjct: 4 HHHHSSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAV 53
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding
DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A
2kq5_A
Length = 499
Score = 81.3 bits (201), Expect = 2e-16
Identities = 26/341 (7%), Positives = 67/341 (19%), Gaps = 64/341 (18%)
Query: 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALE-------------DLEKTSGKYEAAETL 258
P ++ + + + + +P+ QA ++ + +
Sbjct: 69 PEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPV 128
Query: 259 EDCALRSRKESYD-IVKQAKVAQILGSGG----------HDHPDVATMLNILALVYRDQN 307
A E I Q L + P+ + +
Sbjct: 129 LCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALE 188
Query: 308 KYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367
+ +L A + + + + + P+ +A +
Sbjct: 189 TVQRLLPVLCQAHGLTPQQ--------VVAIASNGGGKQALETVQRLLPVLCQAHGLT-- 238
Query: 368 VLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLAS 427
P + + Q + + +A + P + +
Sbjct: 239 ------PQQVVAIASNGGGKQALETVQRLLPVLCQAHGLT-----PQQ---VVAIASNSG 284
Query: 428 CYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIY 487
+ + Q K + QR L +
Sbjct: 285 GKQALETVQRLLPVLCQAH---------GLTPQQVVAIASN--GGGKQALETVQRLLPVL 333
Query: 488 E--LKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
L P + + + Q
Sbjct: 334 CQAHGLTPQQ---VVAIASHDGGKQALETVQRLLPVLCQAH 371
Score = 78.3 bits (193), Expect = 2e-15
Identities = 22/330 (6%), Positives = 63/330 (19%), Gaps = 76/330 (23%)
Query: 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALE-------------DLEKTSGKYEAAETL 258
P ++ + + + + +P+ QA ++ +
Sbjct: 171 PEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLL-- 228
Query: 259 EDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLND 318
+ + P + + + +L
Sbjct: 229 ---------PVLC-----QAHGL-------TPQQVVAIASNGGGKQALETVQRLLPVLCQ 267
Query: 319 ALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAK 378
A + + + + + + P+ +A + P
Sbjct: 268 AHGLTPQQ--------VVAIASNSGGKQALETVQRLLPVLCQAHGLT--------PQQVV 311
Query: 379 QLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEA 438
+ + Q + + +A L P + +
Sbjct: 312 AIASNGGGKQALETVQRLLPVLCQAHG-----LTPQQ---VVAIASHDGGKQALETVQRL 363
Query: 439 EILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYE--LKLGPDDS 496
+ Q + K + QR L + L P+
Sbjct: 364 LPVLCQAH---------GLTPEQVVAIASNG--GGKQALETVQRLLPVLCQAHGLTPEQ- 411
Query: 497 NVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
+ + + Q
Sbjct: 412 --VVAIASHDGGKQALETVQRLLPVLCQAH 439
Score = 77.5 bits (191), Expect = 3e-15
Identities = 16/239 (6%), Positives = 42/239 (17%), Gaps = 40/239 (16%)
Query: 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRG 349
P + + + + +L A + + +
Sbjct: 273 PQQVVAIASNSGGKQALETVQRLLPVLCQAHGLT--------PQQVVAIASNGGGKQALE 324
Query: 350 KYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYEL 409
+ P+ +A + P + + Q + + +A +
Sbjct: 325 TVQRLLPVLCQAHGLT--------PQQVVAIASHDGGKQALETVQRLLPVLCQAHGL--- 373
Query: 410 KLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQ 469
+ + + Q +
Sbjct: 374 -----TPEQVVAIASNGGGKQALETVQRLLPVLCQAH---------GLTPEQVVAIASH- 418
Query: 470 KNKAKNREKYYQRALEIYE--LKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
+ K + QR L + L P + L
Sbjct: 419 -DGGKQALETVQRLLPVLCQAHGLTPQQ---VVAIASNGGGRPALESIVAQLSRPDPAL 473
Score = 72.9 bits (179), Expect = 8e-14
Identities = 21/232 (9%), Positives = 46/232 (19%), Gaps = 35/232 (15%)
Query: 297 NILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEP 356
+L + R EA + +ALT L + + + P
Sbjct: 37 QLLKIAKRGGVTAVEAVHAWRNALTGAPLNLTPEQVV---AIASHDGGKQALETVQRLLP 93
Query: 357 LCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDS 416
+ +A + P + + Q + + +A +
Sbjct: 94 VLCQAHGLT--------PQQVVAIASHDGGKQALETVQRLLPVLCQAHGL--------TP 137
Query: 417 NVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNR 476
+ + + Q + K
Sbjct: 138 EQVVAIASHDGGKQALETVQALLPVLCQAHGL---------TPEQVVAIASNG--GGKQA 186
Query: 477 EKYYQRALEIYE--LKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
+ QR L + L P + + + Q
Sbjct: 187 LETVQRLLPVLCQAHGLTPQQ---VVAIASNGGGKQALETVQRLLPVLCQAH 235
Score = 62.8 bits (153), Expect = 1e-10
Identities = 13/248 (5%), Positives = 44/248 (17%), Gaps = 60/248 (24%)
Query: 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALE-------------DLEKTSGKYEAAETL 258
P ++ + + + + +P+ QA ++ +
Sbjct: 273 PQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLL-- 330
Query: 259 EDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLND 318
P + + + +L
Sbjct: 331 ---------PVLCQAHGLT------------PQQVVAIASHDGGKQALETVQRLLPVLCQ 369
Query: 319 ALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAK 378
A + + + + + P+ +A + P+
Sbjct: 370 AHGLTPEQ--------VVAIASNGGGKQALETVQRLLPVLCQAHGLT--------PEQVV 413
Query: 379 QLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEA 438
+ + Q + + +A + +
Sbjct: 414 AIASHDGGKQALETVQRLLPVLCQAHGL--------TPQQVVAIASNGGGRPALESIVAQ 465
Query: 439 EILYKQVL 446
L
Sbjct: 466 LSRPDPAL 473
Score = 51.3 bits (123), Expect = 4e-07
Identities = 15/221 (6%), Positives = 43/221 (19%), Gaps = 57/221 (25%)
Query: 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALE-------------DLEKTSGKYEAAETL 258
P ++ + + + + +P+ QA ++ +
Sbjct: 307 PQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLL-- 364
Query: 259 EDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLND 318
+ + P+ + + + +L
Sbjct: 365 ---------PVLC-----QAHGL-------TPEQVVAIASNGGGKQALETVQRLLPVLCQ 403
Query: 319 ALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAK 378
A + + + + P+ +A + P
Sbjct: 404 AHGLT--------PEQVVAIASHDGGKQALETVQRLLPVLCQAHGLT--------PQQVV 447
Query: 379 QLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVA 419
+ + AL +D VA
Sbjct: 448 AIASNGGGRPALESIVAQLSRPDPALAAL-----TNDHLVA 483
Score = 45.5 bits (108), Expect = 4e-05
Identities = 21/186 (11%), Positives = 39/186 (20%), Gaps = 25/186 (13%)
Query: 344 LYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRA 403
+ + + E L A E+R P L + + E ++ A
Sbjct: 6 HHHQWSGARALEALLTVAGELRGP------PLQLDTGQLLKIAKRGGVTAVEAVHAWRNA 59
Query: 404 LEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKP 463
L L L P+ + + + Q
Sbjct: 60 LTGAPLNLTPEQ---VVAIASHDGGKQALETVQRLLPVLCQAH---------GLTPQQVV 107
Query: 464 IWQDRQKNKAKNREKYYQRALEIYE--LKLGPDDSNVAKTKNNLASCYLKQGKYKEAEIL 521
K + QR L + L P+ + + +
Sbjct: 108 AIASHDG--GKQALETVQRLLPVLCQAHGLTPEQ---VVAIASHDGGKQALETVQALLPV 162
Query: 522 YKQVLT 527
Q
Sbjct: 163 LCQAHG 168
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like
repeat, protein transport; 2.90A {Saccharomyces
cerevisiae} SCOP: a.118.8.1
Length = 292
Score = 77.0 bits (189), Expect = 8e-16
Identities = 35/211 (16%), Positives = 64/211 (30%), Gaps = 10/211 (4%)
Query: 281 ILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNN 340
GS + + A + A +YR + + A + A ++K E+ A T
Sbjct: 25 FSGSDSYKFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEA--GNTYVE 82
Query: 341 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSK-YEEVERY 399
+ G A + A++I + A L + +N Y +
Sbjct: 83 AYKCFKSGGNSVNAVDSLENAIQIFTH--RGQFRRGANFKFELGEILENDLHDYAKAIDC 140
Query: 400 YQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRA---HEREFGA 456
Y+ A E Y + K A G+Y EA +Y +++ + ++
Sbjct: 141 YELAGEWYAQD--QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198
Query: 457 CDGDNKPIWQDRQKNKAKNREKYYQRALEIY 487
D K A + Q
Sbjct: 199 KDYFLKKGLCQLAATDAVAAARTLQEGQSED 229
Score = 66.2 bits (161), Expect = 4e-12
Identities = 32/221 (14%), Positives = 58/221 (26%), Gaps = 24/221 (10%)
Query: 227 SQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGG 286
++E A LC QA A ++ A D K+A
Sbjct: 29 DSYKFEEAADLCVQAATIYRLRKELNLAGDSFLKAA--------DYQKKAG--------- 71
Query: 287 HDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLA-VLY 345
+ + ++ A + L +A+ I T A L +L
Sbjct: 72 -NEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI--FTHRGQFRRGANFKFELGEILE 128
Query: 346 GKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALE 405
Y +A + A E + + K A L +Y E Y + ++
Sbjct: 129 NDLHDYAKAIDCYELAGEWYAQ--DQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK 186
Query: 406 IYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 446
+ ++ C L A ++
Sbjct: 187 SS-MGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ 226
Score = 63.1 bits (153), Expect = 4e-11
Identities = 25/203 (12%), Positives = 48/203 (23%), Gaps = 45/203 (22%)
Query: 328 GENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLC 387
A A +Y R + A +A + ++K +
Sbjct: 30 SYKFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKA--GNEDEAGNTYVEAYKCF 87
Query: 388 QNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ-GKYKEAEILYKQVL 446
++ + A++I+ + A K L Y +A
Sbjct: 88 KSGGNSVNAVDSLENAIQIFTHRGQFR--RGANFKFELGEILENDLHDYAKAI------- 138
Query: 447 TRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLA 506
Y+ A E Y + K A
Sbjct: 139 -------------------------------DCYELAGEWYAQD--QSVALSNKCFIKCA 165
Query: 507 SCYLKQGKYKEAEILYKQVLTRA 529
G+Y EA +Y +++ +
Sbjct: 166 DLKALDGQYIEASDIYSKLIKSS 188
Score = 55.8 bits (134), Expect = 9e-09
Identities = 27/186 (14%), Positives = 53/186 (28%), Gaps = 6/186 (3%)
Query: 225 YASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCA--LRSRKESYDIVKQAKVAQIL 282
Y + +A +A + +K + EA T + +S S + V + A +
Sbjct: 47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI 106
Query: 283 GSGGHDHPDVATMLNILALVYR-DQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNL 341
+ A L + D + Y +A + A + ++ A
Sbjct: 107 FTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD--QSVALSNKCFIKC 164
Query: 342 AVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQ 401
A L G+Y EA + + ++ + L + R Q
Sbjct: 165 ADLKALDGQYIEASDIYSKLIK-SSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQ 223
Query: 402 RALEIY 407
Sbjct: 224 EGQSED 229
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A
{Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Length = 125
Score = 69.3 bits (171), Expect = 1e-14
Identities = 44/146 (30%), Positives = 57/146 (39%), Gaps = 24/146 (16%)
Query: 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGK 347
D + A L Y Q Y EA AL + A NL Y K
Sbjct: 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN--------AEAWYNLGNAYYK 55
Query: 348 RGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIY 407
+G Y EA ++ALE+ P+ A+ NL Q Y+E YYQ+ALE+
Sbjct: 56 QGDYDEAIEYYQKALELD--------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL- 106
Query: 408 ELKLGPDDSNVAKTKNNLASCYLKQG 433
D N A+ K NL + KQG
Sbjct: 107 -------DPNNAEAKQNLGNAKQKQG 125
Score = 69.0 bits (170), Expect = 2e-14
Identities = 39/112 (34%), Positives = 52/112 (46%), Gaps = 16/112 (14%)
Query: 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYE 394
A NL Y K+G Y EA ++ALE+ P+ A+ NL Q Y+
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PNNAEAWYNLGNAYYKQGDYD 60
Query: 395 EVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 446
E YYQ+ALE+ D N A+ NL + Y KQG Y EA Y++ L
Sbjct: 61 EAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 104
Score = 56.2 bits (137), Expect = 5e-10
Identities = 44/153 (28%), Positives = 58/153 (37%), Gaps = 54/153 (35%)
Query: 374 PDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQG 433
+ A+ NL Q Y+E YYQ+ALE+ D N A+ NL + Y KQG
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQG 57
Query: 434 KYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGP 493
Y EA +YYQ+ALE+
Sbjct: 58 DYDEAI--------------------------------------EYYQKALEL------- 72
Query: 494 DDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
D N A+ NL + Y KQG Y EA Y++ L
Sbjct: 73 -DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 104
Score = 40.1 bits (95), Expect = 2e-04
Identities = 38/171 (22%), Positives = 51/171 (29%), Gaps = 60/171 (35%)
Query: 220 NLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVA 279
NL Y QG Y+ A+ ++ALE +
Sbjct: 14 NLGNAYYKQGDYDEAIEYYQKALE----------------------------L------- 38
Query: 280 QILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLN 339
P+ A L Y Q Y EA AL + A
Sbjct: 39 ---------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN--------AEAWY 81
Query: 340 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQ 390
NL Y K+G Y EA ++ALE+ P+ A+ NL Q Q
Sbjct: 82 NLGNAYYKQGDYDEAIEYYQKALELD--------PNNAEAKQNLGNAKQKQ 124
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte
oxidase factor, SH3 domain, repeat, TPR repeat cell
cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1
PDB: 1wm5_A 1e96_B*
Length = 213
Score = 69.7 bits (171), Expect = 9e-14
Identities = 30/204 (14%), Positives = 55/204 (26%), Gaps = 49/204 (24%)
Query: 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYE 394
A +L N VL + +K A ++ N+ +
Sbjct: 6 AISLWNEGVLAADKKDWKGALDAFSAVQ-----------DPHSRICFNIGCMYTILKNMT 54
Query: 395 EVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREF 454
E E+ + R++ D ++A Y + KY A K+ L
Sbjct: 55 EAEKAFTRSINR--------DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEAL-------- 98
Query: 455 GACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGK 514
+ + Y L+ + N+A Y K+ +
Sbjct: 99 --------------IQLRGNQLIDYKILGLQFKL--------FACEVLYNIAFMYAKKEE 136
Query: 515 YKEAEILYKQVLTRAHEREFGACD 538
+K+AE + E D
Sbjct: 137 WKKAEEQLALATSMKSEPRHSKID 160
Score = 65.1 bits (159), Expect = 2e-12
Identities = 27/171 (15%), Positives = 54/171 (31%), Gaps = 27/171 (15%)
Query: 296 LNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAE 355
L ++ D+ +K A + + + H+ + N+ +Y EAE
Sbjct: 9 LWNEGVLAADKKDWKGALDAFSAVQ--------DPHSRI---CFNIGCMYTILKNMTEAE 57
Query: 356 PLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI--------Y 407
R++ +A +L KY+ + + AL Y
Sbjct: 58 KAFTRSINRD--------KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDY 109
Query: 408 ELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACD 458
++ + N+A Y K+ ++K+AE + E D
Sbjct: 110 KILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKID 160
Score = 50.1 bits (120), Expect = 4e-07
Identities = 29/159 (18%), Positives = 54/159 (33%), Gaps = 23/159 (14%)
Query: 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRG 349
+ + + +Y EA ++ + H AVA +LY +
Sbjct: 34 DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR------DKHLAVA--YFQRGMLYYQTE 85
Query: 350 KYKEAEPLCKRALEIRE-------KVLGKEH-PDVAKQLNNLALLCQNQSKYEEVERYYQ 401
KY A K AL K+LG + + L N+A + + ++++ E
Sbjct: 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLA 145
Query: 402 RALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEI 440
A + + + +K + C KQ Y+ I
Sbjct: 146 LATSMK-----SEPRH-SKIDKAME-CVWKQKLYEPVVI 177
Score = 28.5 bits (64), Expect = 4.5
Identities = 26/165 (15%), Positives = 43/165 (26%), Gaps = 52/165 (31%)
Query: 211 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESY 270
R N+ Y A +++
Sbjct: 33 QDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--------------------------R 66
Query: 271 DIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIRE------ 324
D +A ++Y KY A L +AL
Sbjct: 67 D------------------KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLID 108
Query: 325 -KTLGENHAAVAA-TLNNLAVLYGKRGKYKEAEPLCKRALEIREK 367
K LG A L N+A +Y K+ ++K+AE A ++ +
Sbjct: 109 YKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153
>3k9i_A BH0479 protein; putative protein binding protein, structural
genomics, joint for structural genomics, JCSG; 2.71A
{Bacillus halodurans}
Length = 117
Score = 65.9 bits (161), Expect = 2e-13
Identities = 24/146 (16%), Positives = 51/146 (34%), Gaps = 35/146 (23%)
Query: 346 GKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALE 405
G G +A P ++A+ G + D+A+ L + +Y + E ++
Sbjct: 1 GVLGLEAQAVPYYEKAIA-----SGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVK 55
Query: 406 IYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIW 465
+ P+ + A G+Y++ L +++ A D++ I
Sbjct: 56 QF-----PNH---QALRVFYAMVLYNLGRYEQGVELLLKII---------AETSDDETI- 97
Query: 466 QDRQKNKAKNREKYYQRALEIYELKL 491
+ Y++A+ Y KL
Sbjct: 98 ------------QSYKQAILFYADKL 111
Score = 53.2 bits (128), Expect = 6e-09
Identities = 21/144 (14%), Positives = 41/144 (28%), Gaps = 32/144 (22%)
Query: 306 QNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 365
+A A+ G +A L + G+Y++AE + ++
Sbjct: 3 LGLEAQAVPYYEKAIA-----SGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ- 56
Query: 366 EKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNL 425
P+ A++ N +YE+ + + DD +
Sbjct: 57 -------FPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAE-----TSDDETIQ------ 98
Query: 426 ASCYLKQGKYKEAEILYKQVLTRA 449
YK+A + Y L
Sbjct: 99 --------SYKQAILFYADKLDET 114
Score = 49.7 bits (119), Expect = 9e-08
Identities = 17/142 (11%), Positives = 40/142 (28%), Gaps = 51/142 (35%)
Query: 392 KYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451
+ YY++A+ G ++A+ L S + G+Y++A
Sbjct: 5 LEAQAVPYYEKAIA-----SGLQGKDLAECYLGLGSTFRTLGEYRKA------------- 46
Query: 452 REFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK 511
E ++ + P+ + A
Sbjct: 47 -------------------------EAVLANGVKQF-----PNH---QALRVFYAMVLYN 73
Query: 512 QGKYKEAEILYKQVLTRAHERE 533
G+Y++ L +++ + E
Sbjct: 74 LGRYEQGVELLLKIIAETSDDE 95
Score = 44.7 bits (106), Expect = 5e-06
Identities = 18/128 (14%), Positives = 39/128 (30%), Gaps = 34/128 (26%)
Query: 284 SGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAV 343
+ G D+A L +R +Y++A +L + + A A+
Sbjct: 18 ASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--------FPNHQALRVFYAM 69
Query: 344 LYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRA 403
+ G+Y++ L + + + + Y++A
Sbjct: 70 VLYNLGRYEQGVELLLKIIAETS-----DDETIQ---------------------SYKQA 103
Query: 404 LEIYELKL 411
+ Y KL
Sbjct: 104 ILFYADKL 111
Score = 32.0 bits (73), Expect = 0.16
Identities = 11/116 (9%), Positives = 25/116 (21%), Gaps = 44/116 (37%)
Query: 208 GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRK 267
G + L + + G Y A + ++
Sbjct: 20 GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVK------------------------ 55
Query: 268 ESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIR 323
P+ + A+V + +Y++ LL +
Sbjct: 56 --------------------QFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAET 91
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Length = 1047
Score = 72.0 bits (176), Expect = 2e-13
Identities = 30/324 (9%), Positives = 70/324 (21%), Gaps = 65/324 (20%)
Query: 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALED-------LEKTSGKYEAAETLEDCALR 264
PA++ + + + + +P+ QA + G +A ET++ L
Sbjct: 189 PAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQR-LL- 246
Query: 265 SRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIRE 324
+ + PD + + + +L A +
Sbjct: 247 ---PVLC-----QAHGL-------PPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLT- 290
Query: 325 KTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLA 384
+ + + P+ +A + PD + +
Sbjct: 291 -------PDQVVAIASHGGGKQALETVQRLLPVLCQAHGLT--------PDQVVAIASHD 335
Query: 385 LLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQ 444
Q + + +A + + + + + Q
Sbjct: 336 GGKQALETVQRLLPVLCQAHGL--------TPDQVVAIASNGGGKQALETVQRLLPVLCQ 387
Query: 445 VLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYE--LKLGPDDSNVAKTK 502
D +A QR L + L PD
Sbjct: 388 AH---------GLTPDQVVAIASNGGKQALET---VQRLLPVLCQAHGLTPDQ---VVAI 432
Query: 503 NNLASCYLKQGKYKEAEILYKQVL 526
+ + + Q
Sbjct: 433 ASHDGGKQALETVQRLLPVLCQTH 456
Score = 58.9 bits (142), Expect = 3e-09
Identities = 18/244 (7%), Positives = 44/244 (18%), Gaps = 40/244 (16%)
Query: 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRG 349
PD + + + +L A + V A + +
Sbjct: 528 PDQVVAIASNGGGKQALETVQRLLPVLCQAHGL-------TPDQVVA-IASNGGGKQALE 579
Query: 350 KYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYEL 409
+ P+ +A + + + Q + + +A
Sbjct: 580 TVQRLLPVLCQAHGLT--------QVQVVAIASNIGGKQALETVQRLLPVLCQAHG---- 627
Query: 410 KLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQ 469
+ + + Q D
Sbjct: 628 ----LTPAQVVAIASHDGGKQALETVQRLLPVLCQAH---------GLTPDQVVAIASNG 674
Query: 470 KNKAKNREKYYQRALEIYE--LKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 527
K + QR L + L + + + + Q
Sbjct: 675 G--GKQALETVQRLLPVLCQAHGLTQEQ---VVAIASNNGGKQALETVQRLLPVLCQAHG 729
Query: 528 RAHE 531
+
Sbjct: 730 LTPD 733
Score = 58.5 bits (141), Expect = 4e-09
Identities = 26/317 (8%), Positives = 66/317 (20%), Gaps = 51/317 (16%)
Query: 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYD 271
P ++ + + + + +P+ QA T + A +
Sbjct: 325 PDQVVAIASHDGGKQALETVQRLLPVLCQAHGL---TPDQVVAIASNGGGKQALETVQRL 381
Query: 272 IVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENH 331
+ + + PD + + + +L A +
Sbjct: 382 LPVLCQAHGL-------TPDQVVAIASNGGK-QALETVQRLLPVLCQAHGL-------TP 426
Query: 332 AAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQS 391
V A + + + P+ + + P + + Q
Sbjct: 427 DQVVA-IASHDGGKQALETVQRLLPVLCQTHGLT--------PAQVVAIASHDGGKQALE 477
Query: 392 KYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451
+++ +A + + + + + Q
Sbjct: 478 TVQQLLPVLCQAHGL--------TPDQVVAIASNIGGKQALATVQRLLPVLCQAH----- 524
Query: 452 REFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYE--LKLGPDDSNVAKTKNNLASCY 509
D K + QR L + L PD +
Sbjct: 525 ----GLTPDQVVAIASNG--GGKQALETVQRLLPVLCQAHGLTPDQVV---AIASNGGGK 575
Query: 510 LKQGKYKEAEILYKQVL 526
+ + Q
Sbjct: 576 QALETVQRLLPVLCQAH 592
Score = 58.1 bits (140), Expect = 5e-09
Identities = 30/324 (9%), Positives = 74/324 (22%), Gaps = 53/324 (16%)
Query: 212 PARLRTLHNLVIQYASQGRYEVAVPLCKQALE-DLEKTSGKYEAAETLEDCALRSRKESY 270
P ++ + + + + +P+ QA + + AL + +
Sbjct: 562 PDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQ--ALETVQRLL 619
Query: 271 DIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGEN 330
++ QA P + + + +L A +
Sbjct: 620 PVLCQAH---------GLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGL-------T 663
Query: 331 HAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQ 390
V A + + + P+ +A + + + + Q
Sbjct: 664 PDQVVA-IASNGGGKQALETVQRLLPVLCQAHGLT--------QEQVVAIASNNGGKQAL 714
Query: 391 SKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT--- 447
+ + +A + PD + + + Q
Sbjct: 715 ETVQRLLPVLCQAHGLT-----PDQ---VVAIASNGGGKQALETVQRLLPVLCQAHGLTP 766
Query: 448 -------------RAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPD 494
+A E + + A ++ALE + +L P
Sbjct: 767 AQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQ-RLLPV 825
Query: 495 DSNVAKTKNNLASCYLKQGKYKEA 518
+ K+A
Sbjct: 826 LCQAHGLTQDQVVAIASNIGGKQA 849
Score = 45.0 bits (106), Expect = 6e-05
Identities = 29/325 (8%), Positives = 64/325 (19%), Gaps = 80/325 (24%)
Query: 202 AQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDC 261
A PA++ + + + + +P+ QA
Sbjct: 620 PVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHG------------------ 661
Query: 262 ALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALT 321
PD + + + +L A
Sbjct: 662 --------------------------LTPDQVVAIASNGGGKQALETVQRLLPVLCQAHG 695
Query: 322 IREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLN 381
+ V A + + + P+ +A + PD +
Sbjct: 696 L-------TQEQVVA-IASNNGGKQALETVQRLLPVLCQAHGLT--------PDQVVAIA 739
Query: 382 NLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEIL 441
+ Q + + +A L P + + +
Sbjct: 740 SNGGGKQALETVQRLLPVLCQAHG-----LTPAQ---VVAIASNIGGKQALETVQRLLPV 791
Query: 442 YKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKT 501
Q + + K + QR L + G V
Sbjct: 792 LCQDHGLTLAQ-----------VVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAI 840
Query: 502 KNNLASCYLKQGKYKEAEILYKQVL 526
+N+ + + Q
Sbjct: 841 ASNIG-GKQALETVQRLLPVLCQDH 864
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND
domain, zinc finger MYND domain-containin 1, structural
genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A*
3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Length = 429
Score = 70.3 bits (171), Expect = 4e-13
Identities = 19/125 (15%), Positives = 43/125 (34%)
Query: 304 RDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALE 363
+ K+++ + ++ + L + + L+ G +EA R +E
Sbjct: 298 KAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTME 357
Query: 364 IREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKN 423
HP Q+ + L +Q + + + + A +I + G + S +
Sbjct: 358 PYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLIL 417
Query: 424 NLASC 428
L C
Sbjct: 418 LLEEC 422
Score = 56.0 bits (134), Expect = 1e-08
Identities = 23/160 (14%), Positives = 49/160 (30%), Gaps = 10/160 (6%)
Query: 236 PLCKQALEDLEKTSGKYEA---AETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPD- 291
C+ +D + +G + + + A I+ S PD
Sbjct: 265 FRCQTQDKDADMLTGDEQVWKEVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDI 324
Query: 292 ---VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKR 348
+L+ + +EA + +H + + L +
Sbjct: 325 NIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQ 384
Query: 349 GKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQ 388
G + +A + A +I G+EH + + L + LL +
Sbjct: 385 GMFPQAMKNLRLAFDIMRVTHGREHSLI-EDL--ILLLEE 421
Score = 52.2 bits (124), Expect = 2e-07
Identities = 20/124 (16%), Positives = 39/124 (31%), Gaps = 11/124 (8%)
Query: 347 KRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406
K+++ +C+ + + L + K L+ C N EE Y R +E
Sbjct: 299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEP 358
Query: 407 YELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQ---VLTRAHEREFGACDGDNKP 463
Y + + L QG + +A + ++ H G
Sbjct: 359 YRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTH--------GREHS 410
Query: 464 IWQD 467
+ +D
Sbjct: 411 LIED 414
Score = 36.4 bits (83), Expect = 0.022
Identities = 18/163 (11%), Positives = 39/163 (23%), Gaps = 41/163 (25%)
Query: 371 KEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYL 430
++ ++ + K+E+V Q + +L + K + +
Sbjct: 281 EQVWKEVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACI 340
Query: 431 KQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELK 490
G +EA Y R +E Y +
Sbjct: 341 NLGLLEEAL--------------------------------------FYGTRTMEPYRIF 362
Query: 491 LGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQ---VLTRAH 530
+ L QG + +A + ++ H
Sbjct: 363 FPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTH 405
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein
O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB:
2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Length = 568
Score = 69.9 bits (171), Expect = 9e-13
Identities = 17/139 (12%), Positives = 31/139 (22%), Gaps = 30/139 (21%)
Query: 393 YEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHER 452
+ A+ P D LA L G E+ ++ L
Sbjct: 5 GPRELLQLRAAVRHR-----PQD---FVAWLMLADAELGMGDTTAGEMAVQRGL------ 50
Query: 453 EFGACDGDNKPIW-----QDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLAS 507
A + + + Q+A + P+ L
Sbjct: 51 ---ALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASD-----AAPEH---PGIALWLGH 99
Query: 508 CYLKQGKYKEAEILYKQVL 526
G+ + A Y +
Sbjct: 100 ALEDAGQAEAAAAAYTRAH 118
Score = 63.7 bits (155), Expect = 7e-11
Identities = 26/198 (13%), Positives = 43/198 (21%), Gaps = 52/198 (26%)
Query: 228 QGRYEVAVPLCKQALE-------------DLEKTSGKYEAAETLEDCALRSRKESYDIVK 274
+ + A+ D E G A E L
Sbjct: 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--------- 52
Query: 275 QAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAV 334
HP + L V Q ++ EAA LL A
Sbjct: 53 --------------HPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAA--------PEH 90
Query: 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYE 394
L G+ + A RA ++ P+ L + +
Sbjct: 91 PGIALWLGHALEDAGQAEAAAAAYTRAHQLL--------PEEPYITAQLLNWRRRLCDWR 142
Query: 395 EVERYYQRALEIYELKLG 412
++ + +G
Sbjct: 143 ALDVLSAQVRAAVAQGVG 160
Score = 39.1 bits (91), Expect = 0.003
Identities = 10/52 (19%), Positives = 15/52 (28%), Gaps = 5/52 (9%)
Query: 480 YQRALEIYE--LKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRA 529
R L ++ P D LA L G E+ ++ L
Sbjct: 5 GPRELLQLRAAVRHRPQD---FVAWLMLADAELGMGDTTAGEMAVQRGLALH 53
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response,
DNA repair, gene regulation; 2.05A {Mus musculus}
Length = 474
Score = 68.5 bits (167), Expect = 2e-12
Identities = 44/321 (13%), Positives = 90/321 (28%), Gaps = 57/321 (17%)
Query: 227 SQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVA-QILGSG 285
+ + + + ++ L Y ++ED ++ D+ ++ + Q +
Sbjct: 39 EEEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAG----RKQQDVQEEMEKTLQQMEEV 94
Query: 286 GHDHPDVATMLNILALVYRDQNKY-KEAANLLNDALTIREKTLGENHAAVAATLNNLAVL 344
A L + Y EA LL+ A+ + + N L +
Sbjct: 95 LGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL--------VEAWNQLGEV 146
Query: 345 YGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVER--YYQR 402
Y K+G A AL + L NL+++ + E +
Sbjct: 147 YWKKGDVTSAHTCFSGALTHC--------KN-KVSLQNLSMVLRQLQTDSGDEHSRHVMD 197
Query: 403 ALEIYE--LKLGPDDSNVAKTKNNLASCYL--------KQGKYKEAEILYKQVLTRAHER 452
++ + +++ D L + YL ++A Y Q
Sbjct: 198 SVRQAKLAVQMDVLDGRSW---YILGNAYLSLYFNTGQNPKISQQALSAYAQAE------ 248
Query: 453 EFGACDGDNKPIWQDRQKNKA---KNREKYYQRALEIYE--LKLGPDDSNVAKTKNNLAS 507
+ N + N+A K E Y ALE + L P + +
Sbjct: 249 KVDRKASSNPDLHL----NRATLHKYEESY-GEALEGFSQAAALDPAW---PEPQQREQQ 300
Query: 508 CYLKQGKYKEAEILYKQVLTR 528
+ + +
Sbjct: 301 LLEFLSRLTSLLESKGKTKPK 321
>3n71_A Histone lysine methyltransferase SMYD1; heart development,
transcription; HET: SFG MES; 2.30A {Mus musculus}
Length = 490
Score = 68.4 bits (166), Expect = 2e-12
Identities = 21/140 (15%), Positives = 47/140 (33%)
Query: 304 RDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALE 363
R + Y E L + L +E + + V L+ + + Y+EA +R ++
Sbjct: 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVD 379
Query: 364 IREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKN 423
K+ + + + L + E +A I + GP +
Sbjct: 380 GYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEA 439
Query: 424 NLASCYLKQGKYKEAEILYK 443
++ +++ E +Y
Sbjct: 440 MRMQTEMELRMFRQNEFMYH 459
Score = 55.0 bits (131), Expect = 3e-08
Identities = 29/191 (15%), Positives = 60/191 (31%), Gaps = 21/191 (10%)
Query: 236 PLCKQALEDLEKTSGKYEAAETLEDC---------------ALRSRKESYDIVKQAKVAQ 280
C++ L+D + K + + E RS +++VK +
Sbjct: 277 EHCQKGLKDDLFLAAKEDPKPSQEVVKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECL 336
Query: 281 ILGSG--GHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATL 338
+ V +L+I + V Y+EA++ + K N+A + +
Sbjct: 337 EKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396
Query: 339 NNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQN---QSKYEE 395
+ G + + +A I G HP K L + + + + E
Sbjct: 397 MRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPIT-KDLEAMRMQTEMELRMFRQNE 455
Query: 396 VERYYQRALEI 406
+ R +
Sbjct: 456 FMYHKMREAAL 466
Score = 48.8 bits (115), Expect = 3e-06
Identities = 24/177 (13%), Positives = 48/177 (27%), Gaps = 38/177 (21%)
Query: 347 KRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406
G Y E LC+ LE +E V + V + L+ + + YEE Y +R ++
Sbjct: 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDG 380
Query: 407 YELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQ 466
Y +++ + G +
Sbjct: 381 YMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGH--------------------------- 413
Query: 467 DRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYK 523
+A I + GP + ++ +++ E +Y
Sbjct: 414 -----------GMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYH 459
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90,
transferase-transferase inhibitor; HET: SFG; 1.80A {Mus
musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A*
3tg4_A* 3tg5_A* 3rib_A*
Length = 433
Score = 67.6 bits (164), Expect = 3e-12
Identities = 13/111 (11%), Positives = 34/111 (30%)
Query: 304 RDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALE 363
+ E + + +++ + + + ++ A ++ ++
Sbjct: 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIK 368
Query: 364 IREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPD 414
K +VA L L E+ ++A+ I E+ G D
Sbjct: 369 PYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKD 419
Score = 55.3 bits (132), Expect = 2e-08
Identities = 23/140 (16%), Positives = 46/140 (32%), Gaps = 8/140 (5%)
Query: 238 CKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHD-HPDVATML 296
+ + ++ A+ + E +I + ++ + + S D + + M+
Sbjct: 291 IRDMVRYARNVIEEFRRAKHYKSP-----SELLEICELSQ--EKMSSVFEDSNVYMLHMM 343
Query: 297 NILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEP 356
V ++ A + K VA+ L LY E
Sbjct: 344 YQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEK 403
Query: 357 LCKRALEIREKVLGKEHPDV 376
K+A+ I E GK+HP +
Sbjct: 404 ALKKAIAIMEVAHGKDHPYI 423
Score = 44.5 bits (104), Expect = 7e-05
Identities = 21/146 (14%), Positives = 38/146 (26%), Gaps = 38/146 (26%)
Query: 349 GKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYE 408
E +C+ + E V + + + +C +E +Y Q+ ++ Y
Sbjct: 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYS 371
Query: 409 LKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDR 468
NVA L Y+ E
Sbjct: 372 KHYPVYSLNVASMWLKLGRLYMGLENKAAGE----------------------------- 402
Query: 469 QKNKAKNREKYYQRALEIYELKLGPD 494
K ++A+ I E+ G D
Sbjct: 403 ---------KALKKAIAIMEVAHGKD 419
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
HET: PGE; 1.85A {Caenorhabditis elegans}
Length = 127
Score = 58.8 bits (143), Expect = 7e-11
Identities = 21/119 (17%), Positives = 46/119 (38%), Gaps = 9/119 (7%)
Query: 329 ENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQ 388
A +L K+ +++A +A+E+ P NN A +
Sbjct: 2 NAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL--------DPSNITFYNNKAAVYF 53
Query: 389 NQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 447
+ K+ E ++ ++A+E+ + D +AK + + + KQ A + + L+
Sbjct: 54 EEKKFAECVQFCEKAVEVGR-ETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLS 111
Score = 56.1 bits (136), Expect = 6e-10
Identities = 21/118 (17%), Positives = 46/118 (38%), Gaps = 9/118 (7%)
Query: 289 HPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKR 348
D A L Q +++A + A+ + + NN A +Y +
Sbjct: 4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL--------DPSNITFYNNKAAVYFEE 55
Query: 349 GKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406
K+ E C++A+E+ + ++ +AK ++ Q Q+ +++ R+L
Sbjct: 56 KKFAECVQFCEKAVEVGRETR-ADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112
Score = 55.0 bits (133), Expect = 1e-09
Identities = 24/157 (15%), Positives = 50/157 (31%), Gaps = 47/157 (29%)
Query: 371 KEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYL 430
D A +L Q +E+ +Y +A+E+ D + NN A+ Y
Sbjct: 2 NAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL--------DPSNITFYNNKAAVYF 53
Query: 431 KQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELK 490
++ K+ E ++ ++A+E+ +
Sbjct: 54 EEKKFAECV--------------------------------------QFCEKAVEVGR-E 74
Query: 491 LGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 527
D +AK + + + KQ A + + L+
Sbjct: 75 TRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLS 111
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus
thuringiensis serovar ISRAELE35646}
Length = 293
Score = 62.1 bits (150), Expect = 9e-11
Identities = 28/232 (12%), Positives = 71/232 (30%), Gaps = 10/232 (4%)
Query: 287 HDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYG 346
+ + ++ Q +YKE N + + L E +A
Sbjct: 69 YSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYH--PEFQQFLQWQYYVAAYVL 126
Query: 347 KRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406
K+ Y+ K+ L + + N +A + ++ +++ L+
Sbjct: 127 KKVDYEYCILELKKLLNQQLTGIDVYQNLYI--ENAIANIYAENGYLKKGIDLFEQILKQ 184
Query: 407 YELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGD---NKP 463
E L ++ K + N A +Y+E+ + + + A G +
Sbjct: 185 LE-ALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRG 243
Query: 464 IWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKY 515
+ + + E Y++A +++ + N ++ +
Sbjct: 244 ECLRKLEYEEAEIEDAYKKASFFFDIL--EMHAYKEALVNKISRLEHHHHHH 293
Score = 59.0 bits (142), Expect = 8e-10
Identities = 33/225 (14%), Positives = 71/225 (31%), Gaps = 8/225 (3%)
Query: 214 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCA--LRSRKESYD 271
R + + VI Q RY+ L+ E + + A + + +
Sbjct: 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEY 133
Query: 272 IVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENH 331
+ + K G D + N +A +Y + K+ +L L E L +N
Sbjct: 134 CILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEA-LHDNE 192
Query: 332 AAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQS 391
N A +Y+E+ +A+EI ++ + + +
Sbjct: 193 EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI--NSMALIGQLYYQRGECLRKLE 250
Query: 392 KYEE-VERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKY 435
E +E Y++A +++ + N ++ +
Sbjct: 251 YEEAEIEDAYKKASFFFDIL--EMHAYKEALVNKISRLEHHHHHH 293
Score = 44.8 bits (105), Expect = 4e-05
Identities = 23/164 (14%), Positives = 56/164 (34%), Gaps = 7/164 (4%)
Query: 373 HPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQ 432
+ KQ + ++ Q +Y+E+ L+ E P+ + + +A+ LK+
Sbjct: 71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYH--PEFQQFLQWQYYVAAYVLKK 128
Query: 433 GKYKEAEILYKQVLTRAHEREFGACDGD---NKPIWQDRQKNKAKNREKYYQRALEIYEL 489
Y+ + K++L + + K +++ L+ E
Sbjct: 129 VDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKG-IDLFEQILKQLE- 186
Query: 490 KLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHERE 533
L ++ K + N A +Y+E+ + + +
Sbjct: 187 ALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN 230
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown
function, PSI-2, protein structure initiative; NMR
{Methanococcus maripaludis}
Length = 112
Score = 57.1 bits (139), Expect = 2e-10
Identities = 17/112 (15%), Positives = 31/112 (27%), Gaps = 14/112 (12%)
Query: 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYE 394
VL G Y E+ L ++A+++ P+ +K N +YE
Sbjct: 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD--------PEESKYWLMKGKALYNLERYE 57
Query: 395 EVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 446
E Y + + E D A + + +
Sbjct: 58 EAVDCYNYVINVIE------DEYNKDVWAAKADALRYIEGKEVEAEIAEARA 103
Score = 45.1 bits (108), Expect = 3e-06
Identities = 11/110 (10%), Positives = 27/110 (24%), Gaps = 14/110 (12%)
Query: 297 NILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEP 356
+ ++ D Y E+ +L A+ + + +Y+EA
Sbjct: 10 YLEGVLQYDAGNYTESIDLFEKAIQLDPE----ESKY----WLMKGKALYNLERYEEAVD 61
Query: 357 LCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406
+ + E A + E + ++
Sbjct: 62 CYNYVINV------IEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKL 105
Score = 43.6 bits (104), Expect = 1e-05
Identities = 13/150 (8%), Positives = 31/150 (20%), Gaps = 52/150 (34%)
Query: 377 AKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYK 436
++ +L + Y E +++A+++ D +K +Y+
Sbjct: 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQL--------DPEESKYWLMKGKALYNLERYE 57
Query: 437 EAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDS 496
EA Y + + E D
Sbjct: 58 EAV--------------------------------------DCYNYVINVIE------DE 73
Query: 497 NVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
A + + +
Sbjct: 74 YNKDVWAAKADALRYIEGKEVEAEIAEARA 103
Score = 32.8 bits (76), Expect = 0.064
Identities = 7/75 (9%), Positives = 21/75 (28%), Gaps = 6/75 (8%)
Query: 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRG 349
P+ + + + +Y+EA + N + + E A
Sbjct: 37 PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIED------EYNKDVWAAKADALRYIE 90
Query: 350 KYKEAEPLCKRALEI 364
+ + + ++
Sbjct: 91 GKEVEAEIAEARAKL 105
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide
repeat, TPR, chapero virulence; 2.15A {Shigella
flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Length = 151
Score = 57.9 bits (140), Expect = 3e-10
Identities = 20/153 (13%), Positives = 55/153 (35%), Gaps = 20/153 (13%)
Query: 305 DQNKYKEAANLLNDALTIREKTLGENHA---AVAATLNNLAVLYGKRGKYKEAEPLCKRA 361
+ + + + + DA+ TL + +A + + + A + +G+ +EAE +
Sbjct: 4 NITENESISTAVIDAIN-SGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFL 62
Query: 362 LEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKT 421
+ LA + Q + ++++ Y A + N
Sbjct: 63 CIY--------DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL--------GKNDYTP 106
Query: 422 KNNLASCYLKQGKYKEAEILYKQVLTRAHEREF 454
+ C L+ +A+ ++ V+ +++ +
Sbjct: 107 VFHTGQCQLRLKAPLKAKECFELVIQHSNDEKL 139
Score = 52.1 bits (125), Expect = 3e-08
Identities = 21/153 (13%), Positives = 54/153 (35%), Gaps = 24/153 (15%)
Query: 389 NQSKYEEVERYYQRALEIYE-----LKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYK 443
N ++ E + A+ + D + + A + +G+ +EAE+ ++
Sbjct: 4 NITENESISTAVIDAINSGATLKDINAIPDDMMDDIY---SYAYDFYNKGRIEEAEVFFR 60
Query: 444 QVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYE--LKLGPDDSNVAKT 501
+ D N ++ +Q+A ++Y LG +D
Sbjct: 61 FLC---------IYDFYNVDYIM--GLAAIYQIKEQFQQAADLYAVAFALGKND---YTP 106
Query: 502 KNNLASCYLKQGKYKEAEILYKQVLTRAHEREF 534
+ C L+ +A+ ++ V+ +++ +
Sbjct: 107 VFHTGQCQLRLKAPLKAKECFELVIQHSNDEKL 139
Score = 43.2 bits (102), Expect = 3e-05
Identities = 10/119 (8%), Positives = 34/119 (28%), Gaps = 16/119 (13%)
Query: 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRG 349
D+ + A + ++ + +EA + LA +Y +
Sbjct: 33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--------DFYNVDYIMGLAAIYQIKE 84
Query: 350 KYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYE 408
++++A L A + + + + + + ++ ++
Sbjct: 85 QFQQAADLYAVAFAL--------GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSN 135
Score = 32.8 bits (75), Expect = 0.099
Identities = 8/76 (10%), Positives = 29/76 (38%), Gaps = 8/76 (10%)
Query: 289 HPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKR 348
+ LA +Y+ + ++++AA+L A + + ++ + + +
Sbjct: 66 DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN----DYTP----VFHTGQCQLRL 117
Query: 349 GKYKEAEPLCKRALEI 364
+A+ + ++
Sbjct: 118 KAPLKAKECFELVIQH 133
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin,
type III secretion, protein binding; 1.85A {Pseudomonas
aeruginosa} PDB: 2xcc_A
Length = 142
Score = 57.8 bits (140), Expect = 3e-10
Identities = 20/117 (17%), Positives = 37/117 (31%), Gaps = 16/117 (13%)
Query: 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYE 394
L L + GK+ +A+ + + + A+ L Q+ YE
Sbjct: 18 LEQLYALGFNQYQAGKWDDAQKIFQALCML--------DHYDARYFLGLGACRQSLGLYE 69
Query: 395 EVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451
+ + Y + D N + + A C+L+ G AE + A
Sbjct: 70 QALQSYSYGALM--------DINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAA 118
Score = 50.1 bits (120), Expect = 1e-07
Identities = 14/148 (9%), Positives = 29/148 (19%), Gaps = 21/148 (14%)
Query: 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRG 349
D L L K+ +A + + + L G
Sbjct: 15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY----DARY----FLGLGACRQSLG 66
Query: 350 KYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYEL 409
Y++A + + + + A + E + A
Sbjct: 67 LYEQALQSYSYGALMD--------INEPRFPFHAAECHLQLGDLDGAESGFYSARA---- 114
Query: 410 KLGPDDSNVAKTKNNLASCYLKQGKYKE 437
L + K+
Sbjct: 115 -LAAAQPAHEALAARAGAMLEAVTARKD 141
Score = 49.0 bits (117), Expect = 3e-07
Identities = 23/158 (14%), Positives = 42/158 (26%), Gaps = 54/158 (34%)
Query: 374 PDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQG 433
D +QL L K+++ ++ +Q + D A+ L +C G
Sbjct: 15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCML--------DHYDARYFLGLGACRQSLG 66
Query: 434 KYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGP 493
Y++A + Y +
Sbjct: 67 LYEQAL--------------------------------------QSYSYGALM------- 81
Query: 494 DDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 531
D N + + A C+L+ G AE + A
Sbjct: 82 -DINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAA 118
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A
{Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Length = 91
Score = 55.1 bits (134), Expect = 7e-10
Identities = 33/95 (34%), Positives = 44/95 (46%), Gaps = 16/95 (16%)
Query: 339 NNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVER 398
NL Y K+G Y EA ++ALE+ P+ A+ NL Q Y+E
Sbjct: 13 YNLGNAYYKQGDYDEAIEYYQKALELD--------PNNAEAWYNLGNAYYKQGDYDEAIE 64
Query: 399 YYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQG 433
YYQ+ALE+ D N A+ K NL + KQG
Sbjct: 65 YYQKALEL--------DPNNAEAKQNLGNAKQKQG 91
Score = 48.2 bits (116), Expect = 2e-07
Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Query: 374 PDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQG 433
+ A+ NL Q Y+E YYQ+ALE+ D N A+ NL + Y KQG
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQG 57
Query: 434 KYKEAEILYKQVL 446
Y EA Y++ L
Sbjct: 58 DYDEAIEYYQKAL 70
Score = 45.9 bits (110), Expect = 1e-06
Identities = 27/101 (26%), Positives = 35/101 (34%), Gaps = 16/101 (15%)
Query: 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRG 349
+ A L Y Q Y EA AL + A NL Y K+G
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN--------AEAWYNLGNAYYKQG 57
Query: 350 KYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQ 390
Y EA ++ALE+ P+ A+ NL Q Q
Sbjct: 58 DYDEAIEYYQKALELD--------PNNAEAKQNLGNAKQKQ 90
Score = 36.2 bits (85), Expect = 0.003
Identities = 31/111 (27%), Positives = 40/111 (36%), Gaps = 46/111 (41%)
Query: 416 SNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKN 475
N A+ NL + Y KQG Y EA
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAI------------------------------------ 29
Query: 476 REKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
+YYQ+ALE+ D N A+ NL + Y KQG Y EA Y++ L
Sbjct: 30 --EYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, protein binding, chaperone; 1.90A {Homo sapiens}
SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Length = 131
Score = 55.0 bits (133), Expect = 2e-09
Identities = 23/116 (19%), Positives = 42/116 (36%), Gaps = 9/116 (7%)
Query: 332 AAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQS 391
A L K+ + A +A E+ P + N A + +
Sbjct: 1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKG 52
Query: 392 KYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 447
Y + ++A+E+ + D +AK + + Y K+ KYK+A Y + L
Sbjct: 53 DYNKCRELCEKAIEVGR-ENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLA 107
Score = 51.5 bits (124), Expect = 3e-08
Identities = 19/114 (16%), Positives = 44/114 (38%), Gaps = 9/114 (7%)
Query: 293 ATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYK 352
A L + + A + A + + N A +Y ++G Y
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKGDYN 55
Query: 353 EAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406
+ LC++A+E+ + +++ +AK + + KY++ +Y ++L
Sbjct: 56 KCRELCEKAIEVGRENR-EDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108
Score = 48.1 bits (115), Expect = 5e-07
Identities = 24/151 (15%), Positives = 48/151 (31%), Gaps = 47/151 (31%)
Query: 377 AKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYK 436
A + L + ++ ++Y +A E+ D N A+ Y ++G Y
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKGDYN 55
Query: 437 EAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDS 496
+ + ++A+E+ + D
Sbjct: 56 KCR--------------------------------------ELCEKAIEVGR-ENREDYR 76
Query: 497 NVAKTKNNLASCYLKQGKYKEAEILYKQVLT 527
+AK + + Y K+ KYK+A Y + L
Sbjct: 77 QIAKAYARIGNSYFKEEKYKDAIHFYNKSLA 107
Score = 39.6 bits (93), Expect = 4e-04
Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 7/104 (6%)
Query: 289 HPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKR 348
P T + A VY ++ Y + L A+ + + E++ +A + Y K
Sbjct: 34 DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR-EDYRQIAKAYARIGNSYFKE 92
Query: 349 GKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSK 392
KYK+A ++L PDV K+ + + Q +
Sbjct: 93 EKYKDAIHFYNKSLAE------HRTPDVLKKCQQAEKILKEQER 130
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR),
beta-hairpin, alpha-solenoi transport protein; 2.60A
{Bos taurus}
Length = 291
Score = 57.8 bits (139), Expect = 2e-09
Identities = 47/308 (15%), Positives = 78/308 (25%), Gaps = 88/308 (28%)
Query: 225 YASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGS 284
Y +Q +Y L++++ +S A + L S IV +
Sbjct: 44 YLAQRKYG-------VVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSV 96
Query: 285 GGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVL 344
T L + A +Y A L+ ++ + +
Sbjct: 97 ----DVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLECMAM-------------TVQI 139
Query: 345 YGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLA--LLCQNQSKYEEVERYYQR 402
K + A K+ + D A L K ++ +Q
Sbjct: 140 LLKLDRLDLARKELKKMQDQ--------DEDATLTQLATAWVSLAAGGEKLQDAYYIFQE 191
Query: 403 ALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNK 462
+ S N A+C++ QG+++ A
Sbjct: 192 MADKC--------SPTLLLLNGQAACHMAQGRWEAA------------------------ 219
Query: 463 PIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILY 522
E Q AL+ DS +T NL GK E Y
Sbjct: 220 --------------EGVLQEALDK--------DSGHPETLINLVVLSQHLGKPPEVTNRY 257
Query: 523 KQVLTRAH 530
L AH
Sbjct: 258 LSQLKDAH 265
Score = 55.5 bits (133), Expect = 1e-08
Identities = 30/228 (13%), Positives = 58/228 (25%), Gaps = 40/228 (17%)
Query: 299 LALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLC 358
L Y Q KY + + + AV A +
Sbjct: 40 LYRAYLAQRKYGVVLDEIKPSSA-------PELQAVRM----FAEYLASHSRRDAI---- 84
Query: 359 KRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNV 418
E+ ++ L A + + R + +
Sbjct: 85 --VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLE----------- 131
Query: 419 AKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREK 478
LK + A K++ D D +
Sbjct: 132 --CMAMTVQILLKLDRLDLARKELKKMQ---------DQDEDATLTQLATAWVSLAAGGE 180
Query: 479 YYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
Q A I++ ++ S N A+C++ QG+++ AE + ++ L
Sbjct: 181 KLQDAYYIFQ-EMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEAL 227
Score = 50.9 bits (121), Expect = 4e-07
Identities = 38/217 (17%), Positives = 68/217 (31%), Gaps = 40/217 (18%)
Query: 215 LRTLHNLVIQYASQGRYEVAVPLCKQALE---DLEKTSGKYEAAETLEDC-----ALRSR 266
L+ + AS R + V + + D+ T+ AA ALR+
Sbjct: 65 LQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTL 124
Query: 267 KESYDIVKQAKVAQILGSGGHD-------------HPDVATMLNILALV--YRDQNKYKE 311
+ + A QIL D A V K ++
Sbjct: 125 HQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQD 184
Query: 312 AANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 371
A + + + + LN A + +G+++ AE + + AL+
Sbjct: 185 AYYIFQEMA--------DKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD------ 230
Query: 372 EHPDVAKQLNNLALLCQNQSKYEE-VERYYQRALEIY 407
+ L NL +L Q+ K E RY + + +
Sbjct: 231 --SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics,
PSI-2, protein structure initiative; 2.80A {Salinibacter
ruber} PDB: 2kcl_A 2kcv_A
Length = 100
Score = 53.4 bits (129), Expect = 3e-09
Identities = 17/105 (16%), Positives = 32/105 (30%), Gaps = 14/105 (13%)
Query: 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYE 394
T LA + K A L + +E PD +L L + + +
Sbjct: 7 PFTRYALAQEHLKHDNASRALALFEELVET--------DPDYVGTYYHLGKLYERLDRTD 58
Query: 395 EVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAE 439
+ Y + +E+ ++ K + L LK +
Sbjct: 59 DAIDTYAQGIEVA-----REEGT-QKDLSELQDAKLKAEGLEHHH 97
Score = 50.0 bits (120), Expect = 6e-08
Identities = 12/75 (16%), Positives = 22/75 (29%), Gaps = 8/75 (10%)
Query: 372 EHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLK 431
E P+ LA ++ +E D + T +L Y +
Sbjct: 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVET--------DPDYVGTYYHLGKLYER 53
Query: 432 QGKYKEAEILYKQVL 446
+ +A Y Q +
Sbjct: 54 LDRTDDAIDTYAQGI 68
Score = 48.0 bits (115), Expect = 3e-07
Identities = 16/111 (14%), Positives = 32/111 (28%), Gaps = 14/111 (12%)
Query: 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRG 349
P+ LA + + A L + + T +L LY +
Sbjct: 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPD--------YVGTYYHLGKLYERLD 55
Query: 350 KYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYY 400
+ +A + +E+ +E K L+ L E ++
Sbjct: 56 RTDDAIDTYAQGIEVA-----REEGT-QKDLSELQDAKLKAEGLEHHHHHH 100
Score = 36.5 bits (85), Expect = 0.002
Identities = 16/114 (14%), Positives = 28/114 (24%), Gaps = 49/114 (42%)
Query: 413 PDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNK 472
P+D T+ LA +LK A
Sbjct: 4 PED---PFTRYALAQEHLKHDNASRAL--------------------------------- 27
Query: 473 AKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
++ +E D + T +L Y + + +A Y Q +
Sbjct: 28 -----ALFEELVET--------DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68
Score = 27.6 bits (62), Expect = 3.3
Identities = 9/67 (13%), Positives = 19/67 (28%), Gaps = 6/67 (8%)
Query: 289 HPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKR 348
PD L +Y ++ +A + + + + G L+ L K
Sbjct: 37 DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE-GTQKD-----LSELQDAKLKA 90
Query: 349 GKYKEAE 355
+
Sbjct: 91 EGLEHHH 97
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide
repeat, type III secretion; HET: MLY; 1.95A {Yersinia
enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Length = 148
Score = 52.2 bits (125), Expect = 2e-08
Identities = 18/117 (15%), Positives = 34/117 (29%), Gaps = 16/117 (13%)
Query: 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYE 394
L +LA + G Y++A + + + ++ L Q +Y+
Sbjct: 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD--------HYDSRFFLGLGACRQAMGQYD 72
Query: 395 EVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 451
Y + D + + A C L+ G+ EAE
Sbjct: 73 LAIHSYSYGAVM--------DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121
Score = 30.3 bits (68), Expect = 0.84
Identities = 10/51 (19%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Query: 476 REKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
+ Y+ A +++ L D ++ L +C G+Y A Y
Sbjct: 33 QSGXYEDAHXVFQ-ALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGA 82
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical,
transport protein; 1.60A {Trypanosoma brucei} SCOP:
a.118.8.1
Length = 121
Score = 50.1 bits (120), Expect = 8e-08
Identities = 13/107 (12%), Positives = 23/107 (21%), Gaps = 16/107 (14%)
Query: 340 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERY 399
+ K EA + + P+ + +L L K
Sbjct: 22 EEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIA 73
Query: 400 YQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 446
A + D LA + + A + L
Sbjct: 74 LNHARML--------DPKDIAVHAALAVSHTNEHNANAALASLRAWL 112
Score = 47.1 bits (112), Expect = 1e-06
Identities = 13/108 (12%), Positives = 21/108 (19%), Gaps = 16/108 (14%)
Query: 299 LALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLC 358
L EAA + +L + + K A
Sbjct: 23 EGLSMLKLANLAEAALAFEAVCQKEPER--------EEAWRSLGLTQAENEKDGLAIIAL 74
Query: 359 KRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406
A + P LA+ N+ + L
Sbjct: 75 NHARML--------DPKDIAVHAALAVSHTNEHNANAALASLRAWLLS 114
Score = 38.6 bits (90), Expect = 8e-04
Identities = 14/79 (17%), Positives = 23/79 (29%), Gaps = 8/79 (10%)
Query: 289 HPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKR 348
P+ L L + K A LN A + ++ A LAV +
Sbjct: 47 EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD----PKDIAV----HAALAVSHTNE 98
Query: 349 GKYKEAEPLCKRALEIREK 367
A + L + +
Sbjct: 99 HNANAALASLRAWLLSQPQ 117
Score = 38.2 bits (89), Expect = 0.001
Identities = 13/108 (12%), Positives = 26/108 (24%), Gaps = 22/108 (20%)
Query: 424 NLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQD-----RQKNKAKNREK 478
LK EA + ++ V + + + + W+ + K
Sbjct: 22 EEGLSMLKLANLAEAALAFEAVCQK---------EPEREEAWRSLGLTQAENEKDGLAII 72
Query: 479 YYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
A + D LA + + A + L
Sbjct: 73 ALNHARML--------DPKDIAVHAALAVSHTNEHNANAALASLRAWL 112
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 53.3 bits (127), Expect = 2e-07
Identities = 60/383 (15%), Positives = 121/383 (31%), Gaps = 135/383 (35%)
Query: 72 SLEIIELGLNEAQVMTALAGHLQNVEAEKQKLRTQVRR-------LVQENAWLRDELANT 124
SL+ + L +V + L + ++ Q L +V ++ E+ +RD LA
Sbjct: 290 SLDHHSMTLTPDEVKSLLL---KYLDCRPQDLPREVLTTNPRRLSIIAES--IRDGLATW 344
Query: 125 QQ-KLQSSEQANSQLEEEKKHLEFMSSIRKYDSDIQGDENSGDQKSDKHKQDDPVVDLFP 183
K + ++ + +E SS+ + + D V FP
Sbjct: 345 DNWKHVNCDKLTTIIE---------SSLNVLEPAEY-----------RKMFDRLSV--FP 382
Query: 184 DEDNDDRNNLSPTPPSQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEV---AVPLCKQ 240
+ IP L L + + + +V L K
Sbjct: 383 PS-------------------AH----IPTIL-----LSLIWFDVIKSDVMVVVNKLHKY 414
Query: 241 ALEDLEKTSGKYEAAETLEDCALRSRK-------------ESYDIVKQAKVAQILGSG-- 285
+L + + ++ L + + Y+I K ++
Sbjct: 415 SLVEKQPKESTI----SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD 470
Query: 286 -------GHDH---PDVATMLNILALVYRD----QNKYKEAANLLNDALTIREKTLGENH 331
GH H + + + +V+ D + K IR + N
Sbjct: 471 QYFYSHIGH-HLKNIEHPERMTLFRMVFLDFRFLEQK-------------IRHDSTAWN- 515
Query: 332 AAVAATLNNLAVLYGKRGKYK----EAEPLCKRALE--------IREKVLGKEHPDVAKQ 379
A + LN L L YK + +P +R + I E ++ ++ D+ +
Sbjct: 516 -ASGSILNTLQQLK----FYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR- 569
Query: 380 LNNLALLCQNQSKYEEVERYYQR 402
+AL+ ++++ +EE + QR
Sbjct: 570 ---IALMAEDEAIFEEAHKQVQR 589
Score = 41.8 bits (97), Expect = 6e-04
Identities = 41/319 (12%), Positives = 94/319 (29%), Gaps = 91/319 (28%)
Query: 238 CKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLN 297
K L E + ++D +S I+ + ++ I+ S D +
Sbjct: 18 YKDILSVFEDAFVDNFDCKDVQD-MPKS------ILSKEEIDHIIMS-----KDAVSGTL 65
Query: 298 ILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLY-GKRGK-YKEAE 355
L + + + + + L I K L + + +Y +R + Y + +
Sbjct: 66 RLFWTLLSKQE-EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124
Query: 356 PLCKR-------ALEIREKVLG-KEHPDVA--------KQLNNLAL-LCQNQSKYEEVER 398
K L++R+ +L + +V K +AL +C + +V+
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW--VALDVCLS----YKVQC 178
Query: 399 YYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACD 458
+ +I+ +L E + + + ++ +
Sbjct: 179 --KMDFKIF---------------------WLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 459 GDNKPIWQDRQKNKAKNR------EKYYQRALEIYELKLGPDD---SNVAKTKNNLASCY 509
+ + + + K Y+ L + L + + N SC
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV--L----LNVQNAKAWNAFNL--SC- 266
Query: 510 LKQGKYKEAEILYKQVLTR 528
+IL + TR
Sbjct: 267 ---------KIL---LTTR 273
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.4 bits (125), Expect = 4e-07
Identities = 45/262 (17%), Positives = 76/262 (29%), Gaps = 81/262 (30%)
Query: 215 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVK 274
R L + + S + + VP + + A L++ + E +
Sbjct: 6 TRPL---TLSHGSL-EHVLLVP------------TASFFIASQLQEQFNKILPEPTE--- 46
Query: 275 QAKVAQILGSGGHDHPD-----VATMLNILALVYRDQNKYKEAANLLNDALTIREKT-LG 328
G D P V L ++ + +K + +LN LT E L
Sbjct: 47 --------GFAADDEPTTPAELVGKFLGYVS-SLVEPSKVGQFDQVLNLCLTEFENCYLE 97
Query: 329 EN--HAAVAATLNNLAVLYGKRGK----YKEAEPLCKR--------AL------------ 362
N HA A L K + Y A + KR AL
Sbjct: 98 GNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLV 157
Query: 363 --------------EIREKVLGKEHPDVAKQLNNLA--LLCQNQSKYEEVERYYQRALEI 406
E+R+ L + + + L + L + + E+ + + L I
Sbjct: 158 AIFGGQGNTDDYFEELRD--LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNI 215
Query: 407 YELKLGPDDSNVAKTKNNLASC 428
E P + K+ L S
Sbjct: 216 LEWLENPSN---TPDKDYLLSI 234
Score = 40.0 bits (93), Expect = 0.002
Identities = 52/270 (19%), Positives = 90/270 (33%), Gaps = 95/270 (35%)
Query: 244 DLEKTSGKYEAAETLEDCALRSRKESY-----DIVKQAKVAQILGSGGHDHPDVATMLNI 298
DL KTS +AA+ + + A K++Y DIV V + GG + N
Sbjct: 1634 DLYKTS---KAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRE--NY 1688
Query: 299 LALVYRDQNK--------YKEA------------ANLLND------ALT---------IR 323
A+++ +KE LL+ ALT ++
Sbjct: 1689 SAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLK 1748
Query: 324 EKT------------LGENHA--AVAATLN---NLAVLYGKRGKY-KEAEPLCKRALEIR 365
K LGE A ++A ++ + V++ RG + A P R
Sbjct: 1749 SKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVF-YRGMTMQVAVP--------R 1799
Query: 366 EKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRA---LEI--YELKLGPDDSN--- 417
+++ + +A +A ++ VER +R +EI Y N
Sbjct: 1800 DELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNY---------NVEN 1850
Query: 418 ----VAKTKNNL--ASCYLKQGKYKEAEIL 441
A L + L K ++ +I+
Sbjct: 1851 QQYVAAGDLRALDTVTNVLNFIKLQKIDII 1880
Score = 30.8 bits (69), Expect = 1.4
Identities = 29/150 (19%), Positives = 47/150 (31%), Gaps = 54/150 (36%)
Query: 8 YR-------VKKIESIGKMTVMNQEEIMTNTKTVQQGL--EALKNEHTSILNSLSETQHG 58
YR V + E M I N V EAL+ ++ + + + G
Sbjct: 1788 YRGMTMQVAVPRDELGRSNYGM----IAINPGRVAASFSQEALQY----VVERVGK-RTG 1838
Query: 59 GPVEEEKRNMVKNSLEIIELGLNEA--QVMTALAGHLQNVEAEKQKLRT-QVRRLVQENA 115
VE + N N Q AG L+ ++ L +++++
Sbjct: 1839 WLVE------IVN--------YNVENQQY--VAAGDLRALDTVTNVLNFIKLQKI----- 1877
Query: 116 WLRDELANTQQKLQSSEQANSQLEEEKKHL 145
+LQ S LEE + HL
Sbjct: 1878 --------DIIELQKS----LSLEEVEGHL 1895
Score = 28.5 bits (63), Expect = 8.3
Identities = 8/28 (28%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 1 MTKTLNEYRVKKIESIGKMTV-MNQEEI 27
+T LN +++KI+ I ++ ++ EE+
Sbjct: 1865 VTNVLNFIKLQKID-IIELQKSLSLEEV 1891
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein,
tetratricopeptide repeat protein, HOST-virus
interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Length = 131
Score = 48.0 bits (115), Expect = 5e-07
Identities = 28/143 (19%), Positives = 45/143 (31%), Gaps = 25/143 (17%)
Query: 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYE 394
A L K ++ A +A+E+ +P A N A Y
Sbjct: 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--------NPANAVYFCNRAAAYSKLGNYA 63
Query: 395 EVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREF 454
+ +RA+ I D +K + K+ EA YK+ L
Sbjct: 64 GAVQDCERAICI--------DPAYSKAYGRMGLALSSLNKHVEAVAYYKKAL-------- 107
Query: 455 GACDGDNKPIWQDRQKNKAKNRE 477
D DN+ + + + K RE
Sbjct: 108 -ELDPDNETYKSNLKIAELKLRE 129
Score = 41.8 bits (99), Expect = 7e-05
Identities = 28/156 (17%), Positives = 44/156 (28%), Gaps = 54/156 (34%)
Query: 371 KEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYL 430
+E A++L +E +Y +A+E+ + A N A+ Y
Sbjct: 6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIEL--------NPANAVYFCNRAAAYS 57
Query: 431 KQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELK 490
K G Y A QD +RA+ I
Sbjct: 58 KLGNYAGAV--------------------------QD------------CERAICI---- 75
Query: 491 LGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
D +K + K+ EA YK+ L
Sbjct: 76 ----DPAYSKAYGRMGLALSSLNKHVEAVAYYKKAL 107
>2kat_A Uncharacterized protein; NESG, structure, structural genomics,
PSI-2, protein structure initiative; NMR {Bordetella
parapertussis}
Length = 115
Score = 47.3 bits (113), Expect = 6e-07
Identities = 13/105 (12%), Positives = 26/105 (24%), Gaps = 14/105 (13%)
Query: 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYE 394
L Y + ++ A P + AL+ P + L Q Q
Sbjct: 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDF--------DPTYSVAWKWLGKTLQGQGDRA 70
Query: 395 EVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAE 439
+ ++ L + + L + + E
Sbjct: 71 GARQAWESGLAAAQ------SRGDQQVVKELQVFLRRLAREDALE 109
Score = 45.0 bits (107), Expect = 3e-06
Identities = 15/92 (16%), Positives = 26/92 (28%), Gaps = 9/92 (9%)
Query: 361 ALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAK 420
E E +L + D L +++ + + AL+ D +
Sbjct: 4 ITERLEAML-AQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--------DPTYSV 54
Query: 421 TKNNLASCYLKQGKYKEAEILYKQVLTRAHER 452
L QG A ++ L A R
Sbjct: 55 AWKWLGKTLQGQGDRAGARQAWESGLAAAQSR 86
Score = 41.2 bits (97), Expect = 7e-05
Identities = 14/113 (12%), Positives = 32/113 (28%), Gaps = 14/113 (12%)
Query: 289 HPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKR 348
D + L Y + ++ A L AL + L +
Sbjct: 15 GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY--------SVAWKWLGKTLQGQ 66
Query: 349 GKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQ 401
G A + L + D + + L + + ++ + +E ++
Sbjct: 67 GDRAGARQAWESGLAAAQ-----SRGD-QQVVKELQVFLRRLAREDALEHHHH 113
Score = 35.8 bits (83), Expect = 0.006
Identities = 18/132 (13%), Positives = 29/132 (21%), Gaps = 51/132 (38%)
Query: 403 ALEIYE--LKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGD 460
E E L G D+ + L Y + ++ A
Sbjct: 4 ITERLEAMLAQGTDN---MLLRFTLGKTYAEHEQFDAAL--------------------- 39
Query: 461 NKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEI 520
+ + AL+ D + L QG A
Sbjct: 40 -----------------PHLRAALDF--------DPTYSVAWKWLGKTLQGQGDRAGARQ 74
Query: 521 LYKQVLTRAHER 532
++ L A R
Sbjct: 75 AWESGLAAAQSR 86
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 49.3 bits (117), Expect = 2e-06
Identities = 24/133 (18%), Positives = 51/133 (38%), Gaps = 16/133 (12%)
Query: 307 NKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE 366
+Y + + L + EK + + + A NLA+ Y K +Y +A C +AL +
Sbjct: 289 IQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD- 347
Query: 367 KVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLA 426
K L +++E + +++ LE+ P + + ++
Sbjct: 348 -------SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-----PQNKAA---RLQIS 392
Query: 427 SCYLKQGKYKEAE 439
C K ++ E +
Sbjct: 393 MCQKKAKEHNERD 405
Score = 46.2 bits (109), Expect = 2e-05
Identities = 30/177 (16%), Positives = 65/177 (36%), Gaps = 25/177 (14%)
Query: 353 EAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLG 412
E + ++ KE + A + + KY + Y + + E++ G
Sbjct: 244 EVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYG 303
Query: 413 PDDSNVAKTK-------NNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDN-KPI 464
+ ++ NLA CYLK +Y +A + L D N K +
Sbjct: 304 LSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL---------GLDSANEKGL 354
Query: 465 WQDRQKNKAKNREKYYQRALEIYE--LKLGPDDSNVAKTKNNLASCYLKQGKYKEAE 519
+ ++ +A+ ++ A +E L++ P + + ++ C K ++ E +
Sbjct: 355 Y---RRGEAQLLMNEFESAKGDFEKVLEVNPQNKAA---RLQISMCQKKAKEHNERD 405
Score = 41.6 bits (97), Expect = 6e-04
Identities = 20/108 (18%), Positives = 39/108 (36%), Gaps = 15/108 (13%)
Query: 347 KRGKYKEAEPLCKRALEI--REKVLGKEHPDVAKQL-----NNLALLCQNQSKYEEVERY 399
K GKY +A + + E L ++ ++ NLA+ +Y +
Sbjct: 280 KGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVEC 339
Query: 400 YQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 447
+AL + DS K L +++ A+ +++VL
Sbjct: 340 CDKALGL--------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 379
Score = 40.0 bits (93), Expect = 0.002
Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 7/65 (10%)
Query: 469 QKNKAKNREKYYQRALEIYELKLGPDDSNVAKTK-------NNLASCYLKQGKYKEAEIL 521
+ K Y + + E++ G + ++ NLA CYLK +Y +A
Sbjct: 280 KGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVEC 339
Query: 522 YKQVL 526
+ L
Sbjct: 340 CDKAL 344
Score = 33.5 bits (76), Expect = 0.16
Identities = 18/107 (16%), Positives = 39/107 (36%), Gaps = 17/107 (15%)
Query: 292 VATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKY 351
+A LN LA+ Y +Y +A + AL + N L ++
Sbjct: 317 LAAFLN-LAMCYLKLREYTKAVECCDKALGLDSA----NEKG----LYRRGEAQLLMNEF 367
Query: 352 KEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVER 398
+ A+ ++ LE+ ++ Q++ + ++ E +R
Sbjct: 368 ESAKGDFEKVLEVN-----PQNKAARLQISMCQ---KKAKEHNERDR 406
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 49.1 bits (117), Expect = 2e-06
Identities = 31/148 (20%), Positives = 56/148 (37%), Gaps = 17/148 (11%)
Query: 307 NKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE 366
+YK+ + L + + + A A+ NLA+ + K + A C +ALE+
Sbjct: 168 LQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL-- 225
Query: 367 KVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLA 426
+ K L+ + +E +Q+ L++Y P++ K LA
Sbjct: 226 ------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-----PNNKAA---KTQLA 271
Query: 427 SCYLKQGKYKEAE-ILYKQVLTRAHERE 453
C + + E LY + R E E
Sbjct: 272 VCQQRIRRQLAREKKLYANMFERLAEEE 299
Score = 43.7 bits (103), Expect = 9e-05
Identities = 32/174 (18%), Positives = 64/174 (36%), Gaps = 26/174 (14%)
Query: 371 KEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTK-------N 423
+E + + + + + KY++ Y++ + E + + K +
Sbjct: 141 EEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHL 200
Query: 424 NLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDN-KPIWQDRQKNKAKNREKYYQR 482
NLA C+LK + A + L D +N K + ++ +A ++
Sbjct: 201 NLAMCHLKLQAFSAAIESCNKAL---------ELDSNNEKGLS---RRGEAHLAVNDFEL 248
Query: 483 ALEIYE--LKLGPDDSNVAKTKNNLASCYLKQGKYKEAE-ILYKQVLTRAHERE 533
A ++ L+L P++ K LA C + + E LY + R E E
Sbjct: 249 ARADFQKVLQLYPNNKAA---KTQLAVCQQRIRRQLAREKKLYANMFERLAEEE 299
Score = 38.7 bits (90), Expect = 0.003
Identities = 23/108 (21%), Positives = 39/108 (36%), Gaps = 15/108 (13%)
Query: 347 KRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQ-------LNNLALLCQNQSKYEEVERY 399
K GKYK+A K+ + E + + K NLA+ +
Sbjct: 159 KEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIES 218
Query: 400 YQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 447
+ALE+ DSN K + +L ++ A +++VL
Sbjct: 219 CNKALEL--------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 258
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C
biogenesis, O157:H7 EDL933, formate- nitrite reductase
complex, lyase; 2.05A {Escherichia coli}
Length = 177
Score = 46.0 bits (109), Expect = 5e-06
Identities = 25/161 (15%), Positives = 48/161 (29%), Gaps = 24/161 (14%)
Query: 287 HDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLY- 345
+P + +L Y QN Y + AL + GEN LA +
Sbjct: 38 RANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL----RGENAEL----YAALATVLY 89
Query: 346 --GKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRA 403
+ + + +AL + + L LA Q+ Y + +Q+
Sbjct: 90 YQASQHMTAQTRAMIDKALAL--------DSNEITALMLLASDAFMQANYAQAIELWQKV 141
Query: 404 LEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQ 444
++ L N + ++ L Q + +
Sbjct: 142 MD-----LNSPRINRTQLVESINMAKLLQRRSDLEHHHHHH 177
Score = 40.6 bits (95), Expect = 4e-04
Identities = 28/147 (19%), Positives = 50/147 (34%), Gaps = 33/147 (22%)
Query: 388 QNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 447
+Q E + Q + P + ++ L YL Q Y + + Y+Q L
Sbjct: 21 ASQQNPEAQLQALQDKIRAN-----PQN---SEQWALLGEYYLWQNDYSNSLLAYRQALQ 72
Query: 448 RAHEREFGACDGDNKPIWQD------RQKNKAKNRE--KYYQRALEIYELKLGPDDSNVA 499
G+N ++ Q ++ + +AL + DSN
Sbjct: 73 L---------RGENAELYAALATVLYYQASQHMTAQTRAMIDKALAL--------DSNEI 115
Query: 500 KTKNNLASCYLKQGKYKEAEILYKQVL 526
LAS Q Y +A L+++V+
Sbjct: 116 TALMLLASDAFMQANYAQAIELWQKVM 142
Score = 27.5 bits (61), Expect = 8.1
Identities = 11/66 (16%), Positives = 25/66 (37%), Gaps = 5/66 (7%)
Query: 466 QDRQKNKAKNREKYYQRALEIYE--LKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYK 523
+ R ++ + L+ + ++ P + ++ L YL Q Y + + Y+
Sbjct: 12 RQRDPLHQFASQQNPEAQLQALQDKIRANPQN---SEQWALLGEYYLWQNDYSNSLLAYR 68
Query: 524 QVLTRA 529
Q L
Sbjct: 69 QALQLR 74
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1,
SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Length = 164
Score = 43.9 bits (104), Expect = 2e-05
Identities = 25/140 (17%), Positives = 44/140 (31%), Gaps = 25/140 (17%)
Query: 347 KRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406
R +Y +A L +AL I P L+N A ++E+ + A +
Sbjct: 23 ARKEYSKAIDLYTQALSI--------APANPIYLSNRAAAYSASGQHEKAAEDAELATVV 74
Query: 407 YELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQ 466
D +K + L YK A+ Y++ + +G+
Sbjct: 75 --------DPKYSKAWSRLGLARFDMADYKGAKEAYEKGI---------EAEGNGGSDAM 117
Query: 467 DRQKNKAKNREKYYQRALEI 486
R K + + R E
Sbjct: 118 KRGLETTKRKIEEANRGAEP 137
Score = 42.8 bits (101), Expect = 6e-05
Identities = 23/134 (17%), Positives = 48/134 (35%), Gaps = 22/134 (16%)
Query: 306 QNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 365
+ +Y +A +L AL+I L+N A Y G++++A + A +
Sbjct: 24 RKEYSKAIDLYTQALSIAPA--------NPIYLSNRAAAYSASGQHEKAAEDAELATVVD 75
Query: 366 EKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNL 425
P +K + L L + + Y+ + Y++ +E + + K L
Sbjct: 76 --------PKYSKAWSRLGLARFDMADYKGAKEAYEKGIE-----AEGNGGS-DAMKRGL 121
Query: 426 ASCYLKQGKYKEAE 439
+ K +
Sbjct: 122 ETTKRKIEEANRGA 135
Score = 33.5 bits (77), Expect = 0.078
Identities = 20/150 (13%), Positives = 42/150 (28%), Gaps = 54/150 (36%)
Query: 377 AKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYK 436
+ +L + + +Y + Y +AL I +N A+ Y G+++
Sbjct: 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI--------APANPIYLSNRAAAYSASGQHE 62
Query: 437 EAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDS 496
+A +D + A + D
Sbjct: 63 KAA--------------------------ED------------AELATVV--------DP 76
Query: 497 NVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
+K + L YK A+ Y++ +
Sbjct: 77 KYSKAWSRLGLARFDMADYKGAKEAYEKGI 106
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling
protein; 2.85A {Arabidopsis thaliana}
Length = 338
Score = 45.0 bits (106), Expect = 3e-05
Identities = 20/135 (14%), Positives = 39/135 (28%), Gaps = 18/135 (13%)
Query: 307 NKYKEAANLLNDALTIR--EKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 364
+Y+ A + D + K A N+A K +Y EA C L
Sbjct: 200 QQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTE 259
Query: 365 REKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNN 424
K L + + +++A + PDD + +
Sbjct: 260 --------EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-----PDDKAI---RRE 303
Query: 425 LASCYLKQGKYKEAE 439
L + ++ + +
Sbjct: 304 LRALAEQEKALYQKQ 318
Score = 43.5 bits (102), Expect = 1e-04
Identities = 26/184 (14%), Positives = 52/184 (28%), Gaps = 27/184 (14%)
Query: 329 ENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQ--------- 379
E A K K +EA + A+ + +
Sbjct: 173 EERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPC 232
Query: 380 LNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAE 439
N+A +Y+E + L + K + G+ A
Sbjct: 233 HLNIAACLIKLKRYDEAIGHCNIVLTE--------EEKNPKALFRRGKAKAELGQMDSAR 284
Query: 440 ILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVA 499
+++ D+K I ++ + + + YQ+ E+Y+ D A
Sbjct: 285 DDFRKAQK---------YAPDDKAIRRELRALAEQEKA-LYQKQKEMYKGIFKGKDEGGA 334
Query: 500 KTKN 503
K+K+
Sbjct: 335 KSKS 338
Score = 39.2 bits (91), Expect = 0.003
Identities = 27/161 (16%), Positives = 52/161 (32%), Gaps = 27/161 (16%)
Query: 371 KEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTK-------- 422
+E A + + K EE + Y+ A+ +
Sbjct: 173 EERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPC 232
Query: 423 -NNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDN-KPIWQDRQKNKAKNREKYY 480
N+A+C +K +Y EA VL + N K ++ ++ KAK
Sbjct: 233 HLNIAACLIKLKRYDEAIGHCNIVL---------TEEEKNPKALF---RRGKAKAELGQM 280
Query: 481 QRALEIYE--LKLGPDDSNVAKTKNNLASCYLKQGKYKEAE 519
A + + K PDD + + L + ++ + +
Sbjct: 281 DSARDDFRKAQKYAPDDKAI---RRELRALAEQEKALYQKQ 318
Score = 34.6 bits (79), Expect = 0.071
Identities = 12/67 (17%), Positives = 23/67 (34%), Gaps = 9/67 (13%)
Query: 469 QKNKAKNREKYYQRALEIYELKLGPDDSNVAKTK---------NNLASCYLKQGKYKEAE 519
++ K + + Y+ A+ + N+A+C +K +Y EA
Sbjct: 191 KEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAI 250
Query: 520 ILYKQVL 526
VL
Sbjct: 251 GHCNIVL 257
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C,
TPR-containing domain, structural genomics; 1.63A
{Plasmodium falciparum} SCOP: a.118.8.1
Length = 198
Score = 43.6 bits (103), Expect = 4e-05
Identities = 26/149 (17%), Positives = 54/149 (36%), Gaps = 18/149 (12%)
Query: 307 NKYKEAANLLNDALTIREKTLGENHAAVAATL-NNLAVLYGKRGKYKEAEPLCKRALEIR 365
KYKEA + ++ L + + + NLA Y K Y +A + L+I
Sbjct: 59 VKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI- 117
Query: 366 EKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNL 425
+ K L L + EE + +A + P++ ++ +N+
Sbjct: 118 -------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-----PNNLDI---RNSY 162
Query: 426 ASCYLKQGKYKEAE-ILYKQVLTRAHERE 453
C K + ++ + + + + + E
Sbjct: 163 ELCVNKLKEARKKDKLTFGGMFDKGPLYE 191
Score = 37.1 bits (86), Expect = 0.007
Identities = 19/109 (17%), Positives = 34/109 (31%), Gaps = 16/109 (14%)
Query: 347 KRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLN--------NLALLCQNQSKYEEVER 398
K+ + EA K AL+ + + + NLA Y +
Sbjct: 50 KKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAID 109
Query: 399 YYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLT 447
+ + L+I D N K L + G +EA+ + +
Sbjct: 110 HASKVLKI--------DKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150
Score = 29.0 bits (65), Expect = 3.4
Identities = 20/98 (20%), Positives = 30/98 (30%), Gaps = 30/98 (30%)
Query: 429 YLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYE 488
+ K+ + EA + YK+ L + +K KN E
Sbjct: 48 FFKKNEINEAIVKYKEAL---------DFFIHTEEWDDQILLDKKKNIE----------- 87
Query: 489 LKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
NLA+CY K Y +A +VL
Sbjct: 88 ----------ISCNLNLATCYNKNKDYPKAIDHASKVL 115
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural
genomics, joint CENT structural genomics, JCSG, protein
structure initiative; 2.54A {Chlorobium tepidum} SCOP:
a.118.8.8
Length = 159
Score = 41.4 bits (96), Expect = 2e-04
Identities = 22/115 (19%), Positives = 38/115 (33%), Gaps = 9/115 (7%)
Query: 300 ALVYRDQNKYKEAANLLNDALTIREKTLGE----NHAAVAATLNNLAVLYGKRGKYKEAE 355
A +Y EAA A+ I E + A LA + EA
Sbjct: 18 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEAL 77
Query: 356 PLCKRALEIREKVLGKEHPDVAKQ----LNNLALLCQNQSKYEEVERYYQRALEI 406
+AL + G+ + D K + + AL + E +++ +E+
Sbjct: 78 HSADKALHYFNRR-GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131
Score = 41.4 bits (96), Expect = 2e-04
Identities = 27/114 (23%), Positives = 45/114 (39%), Gaps = 7/114 (6%)
Query: 347 KRGKYKEAEPLCKRALEIREKVLGKEHPD----VAKQLNNLALLCQNQSKYEEVERYYQR 402
G+Y EA C+RA+EI + +E D A LA ++E +
Sbjct: 23 VAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADK 82
Query: 403 ALEIYELK--LGPDDSNV-AKTKNNLASCYLKQGKYKEAEILYKQVLTRAHERE 453
AL + + L D+ + + A G+ EA +K+V+ ER+
Sbjct: 83 ALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 136
Score = 29.9 bits (66), Expect = 1.4
Identities = 26/172 (15%), Positives = 47/172 (27%), Gaps = 47/172 (27%)
Query: 371 KEHPDVAKQLNNLALLCQ--NQSKYEEVERYYQRALEIYELKLGPDDSN----VAKTKNN 424
K +V L+ + +Y+E +RA+EI + + A
Sbjct: 3 KPLKEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAG 62
Query: 425 LASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRAL 484
LA + EA +AL
Sbjct: 63 LAEALAGLRSFDEAL--------------------------------------HSADKAL 84
Query: 485 EIYELK--LGPDDSNV-AKTKNNLASCYLKQGKYKEAEILYKQVLTRAHERE 533
+ + L D+ + + A G+ EA +K+V+ ER+
Sbjct: 85 HYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 136
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP:
a.118.8.1 PDB: 2bug_A
Length = 166
Score = 41.6 bits (98), Expect = 2e-04
Identities = 28/144 (19%), Positives = 49/144 (34%), Gaps = 25/144 (17%)
Query: 347 KRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406
K Y+ A +A+E+ +P A N +L Y RA+E+
Sbjct: 25 KAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL 76
Query: 407 YELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQ 466
D K A+ + GK++ A Y+ V+ +K
Sbjct: 77 --------DKKYIKGYYRRAASNMALGKFRAALRDYETVVK---------VKPHDKDAKM 119
Query: 467 DRQKNKAKNREKYYQRALEIYELK 490
Q+ ++K ++RA+ E K
Sbjct: 120 KYQECNKIVKQKAFERAIAGDEHK 143
Score = 35.0 bits (81), Expect = 0.023
Identities = 21/135 (15%), Positives = 39/135 (28%), Gaps = 26/135 (19%)
Query: 306 QNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 365
Y+ A + A+ + A N ++ Y + Y A RA+E+
Sbjct: 26 AKDYENAIKFYSQAIELNPSN--------AIYYGNRSLAYLRTECYGYALGDATRAIELD 77
Query: 366 EKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNL 425
K A K+ R Y+ +++ + K
Sbjct: 78 --------KKYIKGYYRRAASNMALGKFRAALRDYETVVKV--------KPHDKDAKMKY 121
Query: 426 ASC--YLKQGKYKEA 438
C +KQ ++ A
Sbjct: 122 QECNKIVKQKAFERA 136
Score = 30.0 bits (68), Expect = 1.2
Identities = 20/103 (19%), Positives = 35/103 (33%), Gaps = 22/103 (21%)
Query: 429 YLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDR-----QKNKAKNREKYYQRA 483
Y K Y+ A Y ++A E + N + +R + RA
Sbjct: 23 YFKAKDYENAIKFY----SQAIEL-----NPSNAIYYGNRSLAYLRTECYGYALGDATRA 73
Query: 484 LEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
+E+ D K A+ + GK++ A Y+ V+
Sbjct: 74 IEL--------DKKYIKGYYRRAASNMALGKFRAALRDYETVV 108
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase,
ligase-chaperone complex; 1.54A {Mus musculus} PDB:
3q47_B 3q4a_B*
Length = 137
Score = 40.4 bits (95), Expect = 2e-04
Identities = 31/132 (23%), Positives = 40/132 (30%), Gaps = 20/132 (15%)
Query: 347 KRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406
KY EA RA+ +P VA N AL + E+ +RALE+
Sbjct: 21 VGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL 72
Query: 407 YELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQ 466
D K L C L+ Y EA L RA+ I
Sbjct: 73 --------DGQSVKAHFFLGQCQLEMESYDEA----IANLQRAYSLAKEQRLNFGDDIPS 120
Query: 467 DRQKNKAKNREK 478
+ K K
Sbjct: 121 ALRIAKKKRWNS 132
Score = 39.2 bits (92), Expect = 7e-04
Identities = 29/139 (20%), Positives = 43/139 (30%), Gaps = 24/139 (17%)
Query: 306 QNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 365
KY EAA A+T VA N A+ Y K + ++A C+RALE+
Sbjct: 22 GRKYPEAAACYGRAITRNPL--------VAVYYTNRALCYLKMQQPEQALADCRRALEL- 72
Query: 366 EKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNL 425
K L Y+E QRA + +
Sbjct: 73 -------DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL--------AKEQRLNFGDD 117
Query: 426 ASCYLKQGKYKEAEILYKQ 444
L+ K K + ++
Sbjct: 118 IPSALRIAKKKRWNSIEER 136
Score = 32.7 bits (75), Expect = 0.11
Identities = 27/137 (19%), Positives = 37/137 (27%), Gaps = 54/137 (39%)
Query: 390 QSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRA 449
KY E Y RA+ + VA N A CYLK + ++A
Sbjct: 22 GRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQAL---------- 63
Query: 450 HEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCY 509
+RALE+ D K L C
Sbjct: 64 ----------------------------ADCRRALEL--------DGQSVKAHFFLGQCQ 87
Query: 510 LKQGKYKEAEILYKQVL 526
L+ Y EA ++
Sbjct: 88 LEMESYDEAIANLQRAY 104
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain,
DNA-binding, transcription regulation, transmembrane;
1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Length = 372
Score = 42.4 bits (99), Expect = 3e-04
Identities = 25/149 (16%), Positives = 47/149 (31%), Gaps = 19/149 (12%)
Query: 300 ALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCK 359
L++ D A+ LL + + E A A A++ R +
Sbjct: 206 YLLHGDDKSLNRASELLGEIVQSSP----EFTYARA----EKALVDIVRHSQHPLDEKQL 257
Query: 360 RALE--IREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSN 417
AL I V E +++ A+ + K +E + +++ + S
Sbjct: 258 AALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL-------EMSW 310
Query: 418 VAKTKNNLASCYLKQGKYKEAEILYKQVL 446
+ L Y +G +EA Y
Sbjct: 311 LNY--VLLGKVYEMKGMNREAADAYLTAF 337
Score = 42.4 bits (99), Expect = 3e-04
Identities = 29/215 (13%), Positives = 62/215 (28%), Gaps = 34/215 (15%)
Query: 196 TPPSQFAQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAA 255
T +Q A Q + + L Q + +P L + Y+A
Sbjct: 155 TNGNQLAIQNDLLESLSKALN----QPWPQRMQETLQKILPHRGALLTNF------YQAH 204
Query: 256 ETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATMLNILALVYRDQNKY----KE 311
+ L +S + +++ + + P+ ALV ++ ++
Sbjct: 205 DYLLHGDDKSLNRASELLGEIVQSS---------PEFTYARAEKALVDIVRHSQHPLDEK 255
Query: 312 AANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 371
LN + N+ ++ AV +GK E+ +++ L
Sbjct: 256 QLAALNTEIDNIVTLPELNNLSII--YQIKAVSALVKGKTDESYQAINTGIDLEMSWLN- 312
Query: 372 EHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406
L + + + E Y A +
Sbjct: 313 --------YVLLGKVYEMKGMNREAADAYLTAFNL 339
Score = 32.0 bits (72), Expect = 0.43
Identities = 13/138 (9%), Positives = 32/138 (23%), Gaps = 11/138 (7%)
Query: 389 NQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 448
+ ++ + A + + + L
Sbjct: 211 DDKSLNRASELLGEIVQS--------SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNT 262
Query: 449 AHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASC 508
+ + +N I + A + K + + + + S + L
Sbjct: 263 EIDNIVTLPELNNLSIIYQIKAVSALVKGKT-DESYQAINTGIDLEMSWLNY--VLLGKV 319
Query: 509 YLKQGKYKEAEILYKQVL 526
Y +G +EA Y
Sbjct: 320 YEMKGMNREAADAYLTAF 337
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156,
PSI-biology, midwest center structural genomics, MCSG;
2.41A {Caenorhabditis elegans}
Length = 162
Score = 40.4 bits (95), Expect = 4e-04
Identities = 20/136 (14%), Positives = 36/136 (26%), Gaps = 18/136 (13%)
Query: 307 NKYKEAANLLNDALT---IREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALE 363
+ Y++A L+ + E E N++ Y G EAE L+
Sbjct: 32 DAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91
Query: 364 IREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKN 423
K L A K +E E + L + +
Sbjct: 92 R--------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN-------HPAAASVVAR 136
Query: 424 NLASCYLKQGKYKEAE 439
+ ++ + K
Sbjct: 137 EMKIVTERRAEKKADS 152
Score = 36.2 bits (84), Expect = 0.010
Identities = 24/151 (15%), Positives = 41/151 (27%), Gaps = 27/151 (17%)
Query: 347 KRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQ----------LNNLALLCQNQSKYEEV 396
+ YKEA + AL + ++ +E P + N++ N E
Sbjct: 23 VQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEA 82
Query: 397 ERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGA 456
E L+ + K A + K EAE K +L
Sbjct: 83 EETSSEVLKR--------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLR--------- 125
Query: 457 CDGDNKPIWQDRQKNKAKNREKYYQRALEIY 487
+ K + R + + Y
Sbjct: 126 NHPAAASVVAREMKIVTERRAEKKADSRVTY 156
Score = 31.2 bits (71), Expect = 0.40
Identities = 27/148 (18%), Positives = 42/148 (28%), Gaps = 56/148 (37%)
Query: 390 QSKYEEVERYYQRALEIYELKLGPDDSNVAKTK----------NNLASCYLKQGKYKEAE 439
Q Y+E Y+ AL + + + + N++ CYL G EAE
Sbjct: 24 QKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAE 83
Query: 440 ILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVA 499
+VL + N+ KA ++RA
Sbjct: 84 ETSSEVL---------KREETNE---------KA-----LFRRAK--------------- 105
Query: 500 KTKNNLASCYLKQGKYKEAEILYKQVLT 527
+ K EAE K +L
Sbjct: 106 --------ARIAAWKLDEAEEDLKLLLR 125
>2dba_A Smooth muscle cell associated protein-1, isoform 2;
tetratricopeptide repeat, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 148
Score = 39.6 bits (93), Expect = 5e-04
Identities = 18/101 (17%), Positives = 29/101 (28%), Gaps = 13/101 (12%)
Query: 306 QNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 365
Y A AL L A N A + K Y +AE +A+E
Sbjct: 41 CGDYGGALAAYTQALG-----LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD 95
Query: 366 EKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406
K L + + + ++ QR + +
Sbjct: 96 --------GGDVKALYRRSQALEKLGRLDQAVLDLQRCVSL 128
Score = 38.5 bits (90), Expect = 0.001
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 476 REKYYQRALEIYE--LKLGPDDSNVAKTKNNLASCYLKQGKYKEAE 519
+ Y AL Y L L + A N A+C+LK Y +AE
Sbjct: 40 KCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAE 85
Score = 38.1 bits (89), Expect = 0.002
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 400 YQRALEIYE--LKLGPDDSNVAKTKNNLASCYLKQGKYKEAE 439
Y AL Y L L + A N A+C+LK Y +AE
Sbjct: 44 YGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAE 85
Score = 36.6 bits (85), Expect = 0.006
Identities = 19/100 (19%), Positives = 32/100 (32%), Gaps = 13/100 (13%)
Query: 347 KRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406
K G Y A +AL + D A N A Y++ E +A+E
Sbjct: 40 KCGDYGGALAAYTQALGLDAT-----PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK 94
Query: 407 YELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 446
D K + K G+ +A + ++ +
Sbjct: 95 --------DGGDVKALYRRSQALEKLGRLDQAVLDLQRCV 126
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3
ligase, ubiquitinylation, TPR, heat-shock protein
complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Length = 281
Score = 40.3 bits (94), Expect = 0.001
Identities = 31/159 (19%), Positives = 51/159 (32%), Gaps = 16/159 (10%)
Query: 347 KRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406
KY EA RA+ +P VA N AL + E+ +RALE+
Sbjct: 16 VGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL 67
Query: 407 YELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQ 466
D K L C L+ Y EA ++ + A E+ D +
Sbjct: 68 --------DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI 119
Query: 467 DRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNL 505
++K E+ + E++ + +
Sbjct: 120 AKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEEC 158
Score = 39.5 bits (92), Expect = 0.002
Identities = 30/172 (17%), Positives = 52/172 (30%), Gaps = 24/172 (13%)
Query: 306 QNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 365
KY EAA A+T VA N A+ Y K + ++A C+RALE+
Sbjct: 17 GRKYPEAAACYGRAITRNPL--------VAVYYTNRALCYLKMQQPEQALADCRRALELD 68
Query: 366 EKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNL 425
K L Y+E QRA + +
Sbjct: 69 --------GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL--------AKEQRLNFGDD 112
Query: 426 ASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNRE 477
L+ K K + ++ + + E ++ ++ + +
Sbjct: 113 IPSALRIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEG 164
Score = 29.5 bits (66), Expect = 3.0
Identities = 22/113 (19%), Positives = 38/113 (33%), Gaps = 12/113 (10%)
Query: 419 AKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREK 478
A+ + KY EA Y + +T + + +R + +
Sbjct: 4 AQELKEQGNRLFVGRKYPEAAACYGRAIT---------RNPLVAVYYTNRAL--CYLKMQ 52
Query: 479 YYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHE 531
++AL L D +V K L C L+ Y EA ++ + A E
Sbjct: 53 QPEQALADCRRALELDGQSV-KAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 104
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase;
1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Length = 370
Score = 40.1 bits (94), Expect = 0.001
Identities = 28/133 (21%), Positives = 44/133 (33%), Gaps = 17/133 (12%)
Query: 308 KYKEAANLLNDALTIREKTLGENHAAVAATLN-NLAVLYGKRGKYKEAEPLCKRALEIRE 366
KY + + + E G VA + N+ K ++ A C ALEI
Sbjct: 245 KYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID- 303
Query: 367 KVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLA 426
P K L A Q +Y++ ++A E + P+D + L
Sbjct: 304 -------PSNTKALYRRAQGWQGLKEYDQALADLKKAQE-----IAPEDKAIQAE---LL 348
Query: 427 SCYLKQGKYKEAE 439
K K+ E
Sbjct: 349 KVKQKIKAQKDKE 361
Score = 28.9 bits (65), Expect = 3.9
Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 9/59 (15%)
Query: 468 RQKNKAKNREKYYQRALEIY-ELKLGPDDSNVAKTK-------NNLASCYLKQGKYKEA 518
+ +N +KY + L + +D++ AK + N+ +C LK ++ A
Sbjct: 235 KSQNWEMAIKKY-TKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGA 292
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha
subunit; ftase, farnesyltransferase, farnesyl
transferase, prenyltransferase, CAAX, RAS, lipid
modification, prenylation; HET: SUC FAR; 1.50A {Homo
sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A*
1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A*
2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A*
3ksq_A* 1o1t_A* 1o1s_A* ...
Length = 382
Score = 40.1 bits (93), Expect = 0.002
Identities = 27/204 (13%), Positives = 62/204 (30%), Gaps = 23/204 (11%)
Query: 288 DHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGK 347
+ P + + ++ + + D L K N+ A + + +
Sbjct: 161 EQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK----NYHA----WQHRQWVIQE 212
Query: 348 RGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIY 407
+ + L+ N + N + Y + +R ++
Sbjct: 213 FKLWDNELQYVDQLLKE--------DVRNNSVWNQRYFVISNTTGYND-RAVLEREVQYT 263
Query: 408 E--LKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIW 465
+KL P + + + L+ + L Q+L I+
Sbjct: 264 LEMIKLVPHNESAWNYLKGI----LQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIY 319
Query: 466 QDRQKNKAKNREKYYQRALEIYEL 489
+D +N+ N+E +ALE+ E+
Sbjct: 320 EDMLENQCDNKEDILNKALELCEI 343
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural
genomics, PSI-2, protein structure initiative; NMR
{Bacteroides fragilis}
Length = 99
Score = 37.0 bits (86), Expect = 0.002
Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 8/69 (11%)
Query: 378 KQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKE 437
QL + L NQ E + + L+ P + A + + Y K G +++
Sbjct: 2 DQLKTIKEL-INQGDIENALQALEEFLQT-----EPVGKDEAY--YLMGNAYRKLGDWQK 53
Query: 438 AEILYKQVL 446
A Y+ +
Sbjct: 54 ALNNYQSAI 62
Score = 34.3 bits (79), Expect = 0.018
Identities = 9/70 (12%), Positives = 22/70 (31%), Gaps = 8/70 (11%)
Query: 337 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEV 396
L + L +G + A + L+ + + + +++
Sbjct: 3 QLKTIKELI-NQGDIENALQALEEFLQTEPV-------GKDEAYYLMGNAYRKLGDWQKA 54
Query: 397 ERYYQRALEI 406
YQ A+E+
Sbjct: 55 LNNYQSAIEL 64
Score = 33.1 bits (76), Expect = 0.043
Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 469 QKNKAKNREKYYQRALEIYE--LKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
+ K + + AL+ E L+ P + A + + Y K G +++A Y+ +
Sbjct: 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAY--YLMGNAYRKLGDWQKALNNYQSAI 62
Score = 30.0 bits (68), Expect = 0.46
Identities = 17/99 (17%), Positives = 38/99 (38%), Gaps = 13/99 (13%)
Query: 305 DQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 364
+Q + A L + L E + + Y K G +++A + A+E+
Sbjct: 12 NQGDIENALQALEEFLQTEPVGKDEAY-------YLMGNAYRKLGDWQKALNNYQSAIEL 64
Query: 365 REKVLGKEHPDV-AKQLNNLALLCQNQSKYEEVERYYQR 402
+ P + A+++ L N+ Y ++E ++
Sbjct: 65 NP-----DSPALQARKMVMDILNFYNKDMYNQLEHHHHH 98
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative, chaperone; NMR {Homo sapiens}
Length = 133
Score = 37.6 bits (88), Expect = 0.002
Identities = 23/127 (18%), Positives = 44/127 (34%), Gaps = 24/127 (18%)
Query: 306 QNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 365
+ Y +A +A+ K A +N A Y K +++ A C+ +++
Sbjct: 29 KGDYPQAMKHYTEAIKRNPK--------DAKLYSNRAACYTKLLEFQLALKDCEECIQLE 80
Query: 366 EKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNL 425
P K A + Y + YQ+AL++ DS+ + +
Sbjct: 81 --------PTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL--------DSSCKEAADGY 124
Query: 426 ASCYLKQ 432
C + Q
Sbjct: 125 QRCMMAQ 131
Score = 34.1 bits (79), Expect = 0.036
Identities = 23/153 (15%), Positives = 48/153 (31%), Gaps = 54/153 (35%)
Query: 374 PDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQG 433
PD+A + N C + Y + ++Y A++ + AK +N A+CY K
Sbjct: 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR--------NPKDAKLYSNRAACYTKLL 64
Query: 434 KYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGP 493
+++ A +D + +++
Sbjct: 65 EFQLAL--------------------------KD------------CEECIQL------- 79
Query: 494 DDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
+ K A+ Y +A +Y++ L
Sbjct: 80 -EPTFIKGYTRKAAALEAMKDYTKAMDVYQKAL 111
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 40.1 bits (94), Expect = 0.002
Identities = 27/169 (15%), Positives = 68/169 (40%), Gaps = 21/169 (12%)
Query: 7 EYRVKKIESIGKMTVMNQEEIMTNTKTVQQGLEALKNEHTSILNSLSETQHGGPVEEEKR 66
E + KIE + K + GLE + ++ +E +
Sbjct: 905 ELKKLKIE----------ARSVERYKKLHIGLENKIMQLQRKIDEQ---------NKEYK 945
Query: 67 NMVKNSLEIIELGLNEAQVMTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQ 126
++++ + E + + + L+ E E + +V L +E A LR EL TQ
Sbjct: 946 SLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQT 1005
Query: 127 KLQSSEQANSQLEEEKKHLEFMSSIRKYDSDIQGDENSGDQKSDKHKQD 175
+ ++ E+ + + E + L S +++ ++ ++ ++ +++ ++
Sbjct: 1006 EKKTIEEWADKYKHETEQLV--SELKEQNTLLKTEKEELNRRIHDQAKE 1052
Score = 34.3 bits (79), Expect = 0.11
Identities = 26/142 (18%), Positives = 51/142 (35%), Gaps = 30/142 (21%)
Query: 32 KTVQQGLEALKNEHTSILNSLSETQHGGPVEEEKRNMVKNSLEIIELGLNEAQV------ 85
+Q+ ++ E+ S+L ++ + E EK +++ +E + + EA+
Sbjct: 931 MQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEK---LRSDVERLRMSEEEAKNATNRVL 987
Query: 86 -----MTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQS---------- 130
+ L L + EK+ + + E L EL L++
Sbjct: 988 SLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIH 1047
Query: 131 ------SEQANSQLEEEKKHLE 146
+E +L EE K LE
Sbjct: 1048 DQAKEITETMEKKLVEETKQLE 1069
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and
HSP90, C-terminal PA HSP70, peptide binding protein;
1.60A {Saccharomyces cerevisiae}
Length = 126
Score = 36.9 bits (86), Expect = 0.003
Identities = 17/131 (12%), Positives = 35/131 (26%), Gaps = 22/131 (16%)
Query: 306 QNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 365
++ + A + + A +N A K + EA C +A+E
Sbjct: 17 KSDWPNAVKAYTEMIKR--------APEDARGYSNRAAALAKLMSFPEAIADCNKAIEK- 67
Query: 366 EKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNL 425
P+ + A +Y A + +N + +
Sbjct: 68 -------DPNFVRAYIRKATAQIAVKEYASALETLDAART-----KDAEVNN-GSSAREI 114
Query: 426 ASCYLKQGKYK 436
Y K + +
Sbjct: 115 DQLYYKASQQR 125
Score = 30.7 bits (70), Expect = 0.44
Identities = 16/138 (11%), Positives = 31/138 (22%), Gaps = 54/138 (39%)
Query: 389 NQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 448
+S + + Y ++ A+ +N A+ K + EA
Sbjct: 16 TKSDWPNAVKAYTEMIKR--------APEDARGYSNRAAALAKLMSFPEAI--------- 58
Query: 449 AHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASC 508
D +A+E D N + A+
Sbjct: 59 -----------------AD------------CNKAIEK--------DPNFVRAYIRKATA 81
Query: 509 YLKQGKYKEAEILYKQVL 526
+ +Y A
Sbjct: 82 QIAVKEYASALETLDAAR 99
Score = 30.3 bits (69), Expect = 0.62
Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 7/57 (12%)
Query: 467 DRQKNKAKN--REKYYQRALEIYE--LKLGPDDSNVAKTKNNLASCYLKQGKYKEAE 519
+ + + K + + A++ Y +K P+D A+ +N A+ K + EA
Sbjct: 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED---ARGYSNRAAALAKLMSFPEAI 58
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural
protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Length = 530
Score = 37.9 bits (87), Expect = 0.007
Identities = 25/148 (16%), Positives = 45/148 (30%), Gaps = 15/148 (10%)
Query: 385 LLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQ 444
LL + YEE Y++ IY L +D + + K +++K+
Sbjct: 322 LLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 381
Query: 445 VLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYE--LKLGPDDSNVAKTK 502
A R ++ + K A +I+E LK D
Sbjct: 382 AREDARTRH---------HVYVTAALMEYY-CSKDKSVAFKIFELGLKKYGDIPEYV--- 428
Query: 503 NNLASCYLKQGKYKEAEILYKQVLTRAH 530
+ +L+++VLT
Sbjct: 429 LAYIDYLSHLNEDNNTRVLFERVLTSGS 456
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
1.60A {Caenorhabditis elegans}
Length = 126
Score = 35.7 bits (83), Expect = 0.008
Identities = 18/123 (14%), Positives = 39/123 (31%), Gaps = 24/123 (19%)
Query: 306 QNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 365
+ Y A N+A+ A +N A K +++ A C + +
Sbjct: 26 KGDYPTAMRHYNEAVKR--------DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD 77
Query: 366 EKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNL 425
K A ++ + +R Y+ AL++ D + + + +
Sbjct: 78 --------SKFIKGYIRKAACLVAMREWSKAQRAYEDALQV--------DPSNEEAREGV 121
Query: 426 ASC 428
+C
Sbjct: 122 RNC 124
Score = 35.3 bits (82), Expect = 0.013
Identities = 17/100 (17%), Positives = 34/100 (34%), Gaps = 16/100 (16%)
Query: 347 KRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406
K+G Y A A++ P+ A +N A +++ + +
Sbjct: 25 KKGDYPTAMRHYNEAVKR--------DPENAILYSNRAACLTKLMEFQRALDDCDTCIRL 76
Query: 407 YELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 446
DS K A+C + ++ +A+ Y+ L
Sbjct: 77 --------DSKFIKGYIRKAACLVAMREWSKAQRAYEDAL 108
Score = 31.0 bits (71), Expect = 0.33
Identities = 11/46 (23%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 476 REKYYQRALEIYE--LKLGPDDSNVAKTKNNLASCYLKQGKYKEAE 519
++ Y A+ Y +K P++ A +N A+C K +++ A
Sbjct: 25 KKGDYPTAMRHYNEAVKRDPEN---AILYSNRAACLTKLMEFQRAL 67
Score = 30.3 bits (69), Expect = 0.55
Identities = 20/137 (14%), Positives = 38/137 (27%), Gaps = 54/137 (39%)
Query: 390 QSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRA 449
+ Y R+Y A++ D A +N A+C K +++ A
Sbjct: 26 KGDYPTAMRHYNEAVKR--------DPENAILYSNRAACLTKLMEFQRAL---------- 67
Query: 450 HEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCY 509
D + + DS K A+C
Sbjct: 68 ----------------DD------------CDTCIRL--------DSKFIKGYIRKAACL 91
Query: 510 LKQGKYKEAEILYKQVL 526
+ ++ +A+ Y+ L
Sbjct: 92 VAMREWSKAQRAYEDAL 108
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, HSP70, protein binding, chaperone; 1.60A {Homo
sapiens} SCOP: a.118.8.1
Length = 118
Score = 35.2 bits (82), Expect = 0.010
Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 24/123 (19%)
Query: 306 QNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 365
+A ++A+ + NH +N + Y K+G Y++A + ++++
Sbjct: 17 VGNIDDALQCYSEAIKLD----PHNHVL----YSNRSAAYAKKGDYQKAYEDGCKTVDLK 68
Query: 366 EKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNL 425
PD K + A + +++EE +R Y+ L+ ++N + K L
Sbjct: 69 --------PDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH--------EANNPQLKEGL 112
Query: 426 ASC 428
+
Sbjct: 113 QNM 115
Score = 34.1 bits (79), Expect = 0.025
Identities = 12/100 (12%), Positives = 34/100 (34%), Gaps = 16/100 (16%)
Query: 347 KRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406
G +A A+++ P +N + + Y++ + +++
Sbjct: 16 SVGNIDDALQCYSEAIKL--------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL 67
Query: 407 YELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 446
+ K + A+ +++EA+ Y++ L
Sbjct: 68 --------KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGL 99
Score = 29.1 bits (66), Expect = 1.6
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Query: 476 REKYYQRALEIYE--LKLGPDDSNVAKTKNNLASCYLKQGKYKEAE 519
AL+ Y +KL P + +N ++ Y K+G Y++A
Sbjct: 16 SVGNIDDALQCYSEAIKLDPHN---HVLYSNRSAAYAKKGDYQKAY 58
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 36.4 bits (84), Expect = 0.031
Identities = 25/137 (18%), Positives = 52/137 (37%), Gaps = 16/137 (11%)
Query: 24 QEEIMTNTKTVQQGLEALKNEHTSILNSLSETQHGGPVEEEKRNMVKNSLEIIELGLNEA 83
+EE N ++ E++ +E L +++ +E+ KR + S ++ E
Sbjct: 1023 EEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQE--LEKIKRKLEGESSDLHEQIAELQ 1080
Query: 84 QVMTALAGHLQNVEAEKQKLRT--------------QVRRLVQENAWLRDELANTQQKLQ 129
+ L L E E Q ++R L + L+++L + +
Sbjct: 1081 AQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARN 1140
Query: 130 SSEQANSQLEEEKKHLE 146
+E+ L EE + L+
Sbjct: 1141 KAEKQKRDLSEELEALK 1157
Score = 35.6 bits (82), Expect = 0.053
Identities = 18/99 (18%), Positives = 37/99 (37%), Gaps = 14/99 (14%)
Query: 62 EEEKRNMVKNSLEIIELGLNEAQVMTALAGHLQNVEAEKQKLRTQVR------------- 108
EEE + + E + L + EK L+ +++
Sbjct: 856 EEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMR 915
Query: 109 -RLVQENAWLRDELANTQQKLQSSEQANSQLEEEKKHLE 146
RL + L + L + +++ E+ + QL+ EKK ++
Sbjct: 916 VRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQ 954
Score = 29.8 bits (67), Expect = 2.6
Identities = 18/143 (12%), Positives = 62/143 (43%), Gaps = 6/143 (4%)
Query: 38 LEALKNEHTSILNSLSETQHGGPVEEEKRNMVKNSLEIIELGLNEA----QVMTALAGHL 93
+ L+ E + + + + + E++ N + +++E +++ A +L
Sbjct: 971 RQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNL 1030
Query: 94 QNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQS-SEQANSQLEEEKKHL-EFMSSI 151
++ + + + +++ +++ R EL ++KL+ S + Q+ E + + E + +
Sbjct: 1031 TKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQL 1090
Query: 152 RKYDSDIQGDENSGDQKSDKHKQ 174
K + ++Q + ++ +
Sbjct: 1091 AKKEEELQAALARLEDETSQKNN 1113
Score = 28.3 bits (63), Expect = 7.8
Identities = 18/90 (20%), Positives = 39/90 (43%), Gaps = 10/90 (11%)
Query: 93 LQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSSEQANSQLEEEKKHLEFMSSIR 152
L+ EA +QKL+ E ++ + + E N++L +E+K LE +
Sbjct: 964 LEEEEAARQKLQ-------LEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLE--ERVS 1014
Query: 153 KYDSDIQGDENSGDQKSD-KHKQDDPVVDL 181
+++ +E + K+K + + +L
Sbjct: 1015 DLTTNLAEEEEKAKNLTKLKNKHESMISEL 1044
Score = 28.3 bits (63), Expect = 9.5
Identities = 24/130 (18%), Positives = 45/130 (34%), Gaps = 10/130 (7%)
Query: 38 LEALKNEHTSILNSLSETQHGGPVEEEKRNMVKNSLEIIELGL---NEAQVMTALAGHLQ 94
+ L+ E + + + + +EEE+ K LE + + +
Sbjct: 943 SQQLQAEKKKMQQQMLDLEEQ--LEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNN 1000
Query: 95 NVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSSEQANSQLE-----EEKKHLEFMS 149
+ E++ L +V L A ++ N + E S+LE EEK E
Sbjct: 1001 KLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEK 1060
Query: 150 SIRKYDSDIQ 159
RK + +
Sbjct: 1061 IKRKLEGESS 1070
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 34.9 bits (80), Expect = 0.094
Identities = 33/200 (16%), Positives = 60/200 (30%), Gaps = 67/200 (33%)
Query: 104 RTQVRRLVQENAWLRDELA-NTQQKLQSSEQANSQLEEEKKHLEFMSSIRKYDSDIQGDE 162
+ +R + E L + ++ +Q +EE+ LE + +
Sbjct: 901 HSGIRLIEPE---LFNGYNPEKKEMIQEVI-----VEED---LEP----------FEASK 939
Query: 163 NSGDQKSDKHKQDDPVVDLFPDEDNDDR--NNLS------PTP---PSQFAQQVNAG--- 208
+ +Q +H VD+F + + L P A Q+ G
Sbjct: 940 ETAEQFKHQHGD---KVDIFEIPETGEYSVKLLKGATLYIPKALRFDRLVAGQIPTGWNA 996
Query: 209 --YEIPAR-LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRS 265
Y I + + + + V+V +A SG + D
Sbjct: 997 KTYGISDDIISQVD-PITLFVL-----VSV---VEAFIA----SG-------ITDPY--- 1033
Query: 266 RKESYDIVKQAKVAQILGSG 285
E Y V ++V GSG
Sbjct: 1034 --EMYKYVHVSEVGNCSGSG 1051
Score = 29.1 bits (65), Expect = 4.8
Identities = 16/101 (15%), Positives = 33/101 (32%), Gaps = 18/101 (17%)
Query: 455 GACDGDNKPIWQDRQKNKAKN----REKYYQRALE-----IYELKLGPDDSNVAKTKNNL 505
G G W D + + + + KY LE + E +L + + K +
Sbjct: 866 GNLKGRPYTGWVDSKTKEPVDDKDVKAKYETSILEHSGIRLIEPELFNGYN--PEKKEMI 923
Query: 506 ASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQ 546
+++ L ++ +F GD I++
Sbjct: 924 QEVIVEED-------LEPFEASKETAEQFKHQHGDKVDIFE 957
>2l6j_A TPR repeat-containing protein associated with HSP;
tetratricopeptide repeat (TPR), HSP90 CO-factor, protein
BIN; NMR {Saccharomyces cerevisiae}
Length = 111
Score = 32.3 bits (74), Expect = 0.094
Identities = 13/100 (13%), Positives = 27/100 (27%), Gaps = 17/100 (17%)
Query: 347 KRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406
K+G Y+EA + + P +N A+ +Y + + Q+ L
Sbjct: 16 KQGLYREAVHCYDQLITA--------QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67
Query: 407 YELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 446
S + + A + +
Sbjct: 68 --------TSTAEHVAIRSK-LQYRLELAQGAVGSVQIPV 98
Score = 31.5 bits (72), Expect = 0.17
Identities = 17/116 (14%), Positives = 34/116 (29%), Gaps = 20/116 (17%)
Query: 389 NQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTR 448
Q Y E Y + + +N A +K G+Y +A + +Q L
Sbjct: 16 KQGLYREAVHCYDQLITA--------QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGL-- 65
Query: 449 AHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNN 504
+ + K + R + Q A+ ++ + D +
Sbjct: 66 -------RYTSTAEHVAIRS---KLQYRLELAQGAVGSVQIPVVEVDELPEGYDRS 111
Score = 29.6 bits (67), Expect = 0.75
Identities = 10/46 (21%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Query: 476 REKYYQRALEIYE--LKLGPDDSNVAKTKNNLASCYLKQGKYKEAE 519
++ Y+ A+ Y+ + P + +N A +K G+Y +A
Sbjct: 16 KQGLYREAVHCYDQLITAQPQN---PVGYSNKAMALIKLGEYTQAI 58
Score = 29.2 bits (66), Expect = 1.1
Identities = 18/105 (17%), Positives = 35/105 (33%), Gaps = 16/105 (15%)
Query: 306 QNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 365
Q Y+EA + + +T + + +N A+ K G+Y +A +C++ L
Sbjct: 17 QGLYREAVHCYDQLITAQPQ--------NPVGYSNKAMALIKLGEYTQAIQMCQQGLRY- 67
Query: 366 EKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEIYELK 410
L + + V +E+ EL
Sbjct: 68 -------TSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDELP 105
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.20
Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
Query: 239 KQALEDLEKTSGKY--EAAETLEDCALRSRKE 268
KQAL+ L+ + Y ++A L A+++ E
Sbjct: 19 KQALKKLQASLKLYADDSAPAL---AIKATME 47
Score = 30.3 bits (67), Expect = 0.94
Identities = 7/20 (35%), Positives = 11/20 (55%), Gaps = 5/20 (25%)
Query: 141 EK---KHLEFMSSIRKYDSD 157
EK K L+ +S++ Y D
Sbjct: 18 EKQALKKLQ--ASLKLYADD 35
Score = 27.6 bits (60), Expect = 6.2
Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 21/46 (45%)
Query: 99 EKQKLRTQVRRLVQENAWLRDELANTQQKLQSSEQA-----NSQLE 139
EKQ L+ L+ L KL + + A + +E
Sbjct: 18 EKQALKK-----------LQASL-----KLYADDSAPALAIKATME 47
Score = 27.2 bits (59), Expect = 9.6
Identities = 5/28 (17%), Positives = 11/28 (39%), Gaps = 8/28 (28%)
Query: 469 QKNKAKNREKYYQRALEIYELKLGPDDS 496
+K K + +L++Y D +
Sbjct: 18 EKQALKKLQA----SLKLYA----DDSA 37
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent
decarboxylase cobalamin, lyase; 1.46A {Salmonella
enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Length = 364
Score = 32.9 bits (76), Expect = 0.24
Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 6/53 (11%)
Query: 51 SLSETQHGGPVEEEKRNMVKNSLEIIELGLNE------AQVMTALAGHLQNVE 97
+L T HGG + E + + ++++ N V AL +L +E
Sbjct: 2 ALFNTAHGGNIREPATVLGISPDQLLDFSANINPLGMPVSVKRALIDNLDCIE 54
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell
shape regulation; 2.5A {Listeria monocytogenes}
Length = 255
Score = 32.8 bits (75), Expect = 0.25
Identities = 12/48 (25%), Positives = 20/48 (41%)
Query: 108 RRLVQENAWLRDELANTQQKLQSSEQANSQLEEEKKHLEFMSSIRKYD 155
+ EN L++ L Q + ++ K+ L+ SIR YD
Sbjct: 22 KNTYTENQHLKERLEELAQLESEVADLKKENKDLKESLDITDSIRDYD 69
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, super-helix,; 2.9A {Homo sapiens}
SCOP: a.118.8.1 d.159.1.3
Length = 477
Score = 33.1 bits (76), Expect = 0.27
Identities = 25/112 (22%), Positives = 39/112 (34%), Gaps = 16/112 (14%)
Query: 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYE 394
A L A Y K Y+ A +A+E+ +P A N +L Y
Sbjct: 6 AEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYG 57
Query: 395 EVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 446
RA+E+ D K A+ + GK++ A Y+ V+
Sbjct: 58 YALGDATRAIEL--------DKKYIKGYYRRAASNMALGKFRAALRDYETVV 101
Score = 32.3 bits (74), Expect = 0.47
Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 12/103 (11%)
Query: 424 NLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQDRQKNKAKNREKYYQRA 483
A+ Y K Y+ A Y ++A E + N + +R A R + Y A
Sbjct: 11 TQANDYFKAKDYENAIKFY----SQAIEL-----NPSNAIYYGNRSL--AYLRTECYGYA 59
Query: 484 LEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVL 526
L + D K A+ + GK++ A Y+ V+
Sbjct: 60 LGDATRAI-ELDKKYIKGYYRRAASNMALGKFRAALRDYETVV 101
>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT
NEW YORK SGX research center for structural genomics,
nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum}
Length = 144
Score = 31.5 bits (72), Expect = 0.28
Identities = 11/42 (26%), Positives = 15/42 (35%)
Query: 250 GKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPD 291
GK E ET E +R E + +A L H +
Sbjct: 42 GKLEPGETPEAALVRELAEELGVDTRASCLAPLAFASHSYDT 83
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide
repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo
sapiens} SCOP: a.118.8.1
Length = 497
Score = 33.0 bits (74), Expect = 0.29
Identities = 16/104 (15%), Positives = 35/104 (33%), Gaps = 8/104 (7%)
Query: 303 YRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCKRAL 362
++ +N I + L +L + R + +AE + A
Sbjct: 120 RVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAA 179
Query: 363 EIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406
++ P + N LA+L ++ + YY R++ +
Sbjct: 180 QL--------VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV 215
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural
protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Length = 308
Score = 31.9 bits (72), Expect = 0.47
Identities = 29/224 (12%), Positives = 58/224 (25%), Gaps = 43/224 (19%)
Query: 300 ALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRGKYKEAEPLCK 359
A +K +N+A ++ A++ L +LY Y+E+ +
Sbjct: 57 AQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYE 116
Query: 360 RALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALE-------------- 405
+ I ++L E D + + +++A E
Sbjct: 117 KVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAAL 176
Query: 406 --------------IYE--LKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRA 449
I+E LK D + +L+++VLT
Sbjct: 177 MEYYCSKDKSVAFKIFELGLKKYGDIPEYV---LAYIDYLSHLNEDNNTRVLFERVLTSG 233
Query: 450 HEREFGACDGDNKPIWQD-----RQKNKAKNREKYYQRALEIYE 488
+ IW + K +R +
Sbjct: 234 SLPP-----EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 272
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo
sapiens} PDB: 2qa7_A
Length = 120
Score = 30.5 bits (68), Expect = 0.55
Identities = 16/83 (19%), Positives = 40/83 (48%)
Query: 61 VEEEKRNMVKNSLEIIELGLNEAQVMTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDE 120
+E R + ++ + +V+ L GH+ +EA+ + + ++ + +LR E
Sbjct: 17 IERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAE 76
Query: 121 LANTQQKLQSSEQANSQLEEEKK 143
L +++ + +E+A L E ++
Sbjct: 77 LDELRRQREDTEKAQRSLSEIER 99
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets,
alpha helices, AMY amyloidosis, blood coagulation,
disease mutation, glycoprot phosphoprotein; HET: NAG NDG
BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A*
2a45_G*
Length = 562
Score = 32.2 bits (72), Expect = 0.56
Identities = 29/163 (17%), Positives = 59/163 (36%), Gaps = 21/163 (12%)
Query: 68 MVKNSLEIIELGLNEAQVMTALAGHL-----QNVEAEKQKLRTQVRRLVQENAWLRDELA 122
+ N +EI+ + A + +E K+K+ +V+ + +R +L
Sbjct: 86 LTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLV 145
Query: 123 NTQQ-------KLQSSEQANSQLEEEKKHLEFMSSIRKYDSDIQGD--ENSGDQKSDKHK 173
+ ++ K++S + S+ + L+ +K + S D++
Sbjct: 146 DMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQLEQVIAKDLLPSRDRQHLPLI 205
Query: 174 QDDPVVDLFPDEDNDDRNNLSPTPPSQFA----QQVNAGYEIP 212
+ PV DL P ++ L PP A Q+ E P
Sbjct: 206 KMKPVPDLVPGN---FKSQLQKVPPEWKALTDMPQMRMELERP 245
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio
parahaemolyticus RIMD 22 structural genomics, PSI-2,
protein structure initiative; HET: MES; 2.14A {Vibrio
parahaemolyticus}
Length = 176
Score = 29.9 bits (67), Expect = 1.2
Identities = 21/129 (16%), Positives = 44/129 (34%), Gaps = 13/129 (10%)
Query: 400 YQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDG 459
+ +AL + + S K A C L+ +++ A+ L +
Sbjct: 22 HAQALNVIQTLSDELQSR-GDVKLAKADCLLETKQFELAQELLATIP-----------LE 69
Query: 460 DNKPIWQDRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAE 519
++ +++ L+ E +L + N + LA Y + G+ +EA
Sbjct: 70 YQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNF-ELACELAVQYNQVGRDEEAL 128
Query: 520 ILYKQVLTR 528
L +L
Sbjct: 129 ELLWNILKV 137
Score = 28.0 bits (62), Expect = 6.4
Identities = 9/55 (16%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 480 YQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREF 534
+ +AL + + S K A C L+ +++ A+ L + + +
Sbjct: 22 HAQALNVIQTLSDELQSR-GDVKLAKADCLLETKQFELAQELLATIPLEYQDNSY 75
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets,
alpha helices, AMY amyloidosis, blood coagulation,
disease mutation, glycoprot phosphoprotein; HET: NAG NDG
BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Length = 411
Score = 30.3 bits (68), Expect = 1.9
Identities = 18/171 (10%), Positives = 49/171 (28%), Gaps = 29/171 (16%)
Query: 84 QVMTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSSEQANSQLEEE-- 141
+ L+ + V+ + Q L + ++ + + ++ + Q E + + +
Sbjct: 24 GIADFLSTYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAAT 83
Query: 142 KKHLEFMSSIRKYDSDIQGDENSGDQKSDKHKQDDPVVDLFPDEDNDDRNNLSPTPPSQF 201
K + + I KY++ I ++S + + ++ + ++
Sbjct: 84 LKSRKMLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQEPCKDTV 143
Query: 202 AQQVNAGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKY 252
G + C+ K SG Y
Sbjct: 144 QIHDITGKD---------------------------CQDIANKGAKQSGLY 167
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat,
cysteine rich protein, loop-helix-TU repeat protein,
hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Length = 273
Score = 29.9 bits (68), Expect = 2.0
Identities = 20/118 (16%), Positives = 38/118 (32%), Gaps = 28/118 (23%)
Query: 335 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYE 394
L L K + +A+ ++A + + NL +L Y
Sbjct: 6 PKELVGLGAKSYKEKDFTQAKKYFEKACD-------LKENSG---CFNLGVL------YY 49
Query: 395 E---VERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGK-----YKEAEILYKQ 444
+ VE+ ++A Y D N + + L + Y G+ +A Y +
Sbjct: 50 QGQGVEKNLKKAASFYAK---ACDLNYSNGCHLLGNLYYS-GQGVSQNTNKALQYYSK 103
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein,
nuclear protein, neurogenesis, cytosk LIS1 binding,
differentiation; 2.24A {Rattus norvegicus}
Length = 189
Score = 29.3 bits (65), Expect = 2.1
Identities = 24/110 (21%), Positives = 43/110 (39%), Gaps = 3/110 (2%)
Query: 24 QEEIMTNTKTVQQGLEALKNEHTSILNSLSETQHGGPVEEEKRNMVKNSLEIIELGLNEA 83
+ ++ L + + + E + E + SLE E LN+A
Sbjct: 83 YAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQA 142
Query: 84 QVMTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDELANTQQKLQSSEQ 133
A L++ EK+ L V+RL E LR ELA +++ + + +
Sbjct: 143 IERNAF---LESELDEKESLLVSVQRLKDEARDLRQELAVRERQQEVTRK 189
>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2,
protein structure initiative; 1.70A {Chromobacterium
violaceum}
Length = 163
Score = 29.1 bits (65), Expect = 2.6
Identities = 7/47 (14%), Positives = 11/47 (23%), Gaps = 2/47 (4%)
Query: 250 GKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPDVATML 296
GK E +R +E + + L L
Sbjct: 44 GKANRGELRSQALIREIREETGL--RINSMLYLFDHITPFNAHKVYL 88
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding,
cytoplasm, UBL conjugation, endosome, membrane, protein
transport, SH3 domain; 2.60A {Homo sapiens}
Length = 140
Score = 28.4 bits (63), Expect = 2.9
Identities = 20/114 (17%), Positives = 35/114 (30%), Gaps = 6/114 (5%)
Query: 290 PDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNLAVLYGKRG 349
D +L+I V + + K+ I + ++ L L G
Sbjct: 21 EDWGLILDICDKVGQSRTGPKDCLRS------IMRRVNHKDPHVAMQALTLLGACVSNCG 74
Query: 350 KYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRA 403
K E + VL K HP V ++L L + ++ K +
Sbjct: 75 KIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFKNDPQLSLISAM 128
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 29.9 bits (67), Expect = 3.1
Identities = 13/83 (15%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
Query: 62 EEEKRNMVKNSLEIIELGLNEAQ-VMTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDE 120
+ E ++ +E +E NE + + + +E + + L++E ++ E
Sbjct: 2005 KAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTE 2064
Query: 121 LANTQQKLQSSEQANSQLEEEKK 143
+ + K+ S L E+
Sbjct: 2065 SSKVKNKVDRSIALLDNLNSERG 2087
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller,
endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP:
i.23.1.1 PDB: 1xi5_A 3iyv_A
Length = 1630
Score = 29.6 bits (66), Expect = 3.3
Identities = 38/232 (16%), Positives = 72/232 (31%), Gaps = 52/232 (22%)
Query: 296 LNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAVAATLNNL-----AVLYGKRGK 350
+A + ++EA + + N +AV + ++ A + +R
Sbjct: 1052 APDIANIAISNELFEEAFAIF--------RKFDVNTSAVQVLIEHIGNLDRAYEFAERCN 1103
Query: 351 YKEA-EPLCK---RALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVERYYQRALEI 406
L K + ++E + D + +EE+ +Y
Sbjct: 1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKY------- 1156
Query: 407 YELKLGPDDSNVAKTKNNLASCYLKQGKYKEAEILYKQVLTRAHEREFGACDGDNKPIWQ 466
L++ + + + L K + E E AH ++ G
Sbjct: 1157 --LQMARKKARESYVETELIFALAKTNRLAELEEFINGP-NNAHIQQVG----------- 1202
Query: 467 DRQKNKAKNREKYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKYKEA 518
DR + EK Y A +Y SN + LAS + G+Y+ A
Sbjct: 1203 DRCYD-----EKMYDAAKLLYNNV-----SNFGR----LASTLVHLGEYQAA 1240
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A
{Xanthomonas campestris}
Length = 129
Score = 28.1 bits (63), Expect = 3.4
Identities = 14/73 (19%), Positives = 30/73 (41%), Gaps = 5/73 (6%)
Query: 376 VAKQLNNLALLCQNQSKYEEVERYYQRALEIYELKLGPDDSNVAKTKNNLASCYLKQGKY 435
+A+ N+A KY++ + + LE+Y P+ L Y +
Sbjct: 1 MARTAYNVAFDALKNGKYDDASQLFLSFLELY-----PNGVYTPNALYWLGESYYATRNF 55
Query: 436 KEAEILYKQVLTR 448
+ AE ++ +++R
Sbjct: 56 QLAEAQFRDLVSR 68
>2yyv_A Probable 2-phosphosulfolactate phosphatase; uncharacterized
conserved protein, structural genomics; 1.65A
{Thermotoga maritima} PDB: 2yzo_A
Length = 227
Score = 28.9 bits (64), Expect = 3.7
Identities = 16/84 (19%), Positives = 31/84 (36%), Gaps = 5/84 (5%)
Query: 226 ASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSG 285
+ GR+ + L A+ K + + A E +I K + A+ L S
Sbjct: 136 GTNGRFSLEDFLLAGAIVKRLKRNDLGDGAHAAERYFESVENTREEIKKHSSHAKRLISL 195
Query: 286 GHDHPDV--ATMLNILALV--YRD 305
G ++ D+ T ++ V +
Sbjct: 196 GFEN-DIEFCTTEDLFKTVPALVN 218
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc
binuclear cluster, zinc finger, DNA-binding protein;
2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Length = 116
Score = 27.2 bits (60), Expect = 6.0
Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 2/43 (4%)
Query: 356 PLCKRALEIREKVLGKEHPDVAKQLNNLALLCQNQSKYEEVER 398
P C+ + L LN+L + C Q EEV
Sbjct: 62 PSCRYPCFPTD--LESPVKSFLNILNSLMVKCPAQDCNEEVSL 102
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 28.7 bits (63), Expect = 6.1
Identities = 54/376 (14%), Positives = 117/376 (31%), Gaps = 19/376 (5%)
Query: 39 EALKNEHTSILNSLSETQHGGPVEEEKRNMVKNSLEIIELGLNEAQVMTALAGHLQNVEA 98
L+ ++ L + + E + + + L E L ++ +E
Sbjct: 308 CQLEINFNTLQTKLRLSNRPAFMPSEGKMVSDINNAWGGLEQAEKGYEEWLLNEIRRLER 367
Query: 99 EKQKLRTQVRRLVQENAWLRDELANTQQKLQSSEQANSQLEEEKKHLEFMSSIRKYDSDI 158
++ +W + A QQK + + KKH F S + + +
Sbjct: 368 LDHLAEKFRQKASIHESWTDGKEAMLQQKDYETATLSEIKALLKKHEAFESDLAAHQDRV 427
Query: 159 QGDENSGDQKSDKHKQDDPVVDLFPDEDNDDRNNLSPTPPSQFAQQVNAGYEIPARLRTL 218
+ + ++ D P V+ + D +NL + ++ A L T+
Sbjct: 428 EQIAAIAQELNELDYYDSPSVNARCQKICDQWDNLG----ALTQKRREALERTEKLLETI 483
Query: 219 HNLVIQYASQGRYEVAVPLCKQALEDLEKTSGKYEAAETLEDC-ALRSRKESYDIVKQA- 276
L ++YA + +E + T+E+ L + E +
Sbjct: 484 DQLYLEYAKR------AAPFNNWMEGAMEDLQDTFIVHTIEEIQGLTTAHEQFKATLPDA 537
Query: 277 --KVAQILGSGGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALTIREKTLGENHAAV 334
+ ILG V T +A + N + + +
Sbjct: 538 DKERQAILGIHNEVSKIVQTYHVNMAGTNPYTTITPQEINGKWEHVRQLVPRRDQALMEE 597
Query: 335 AATLN-NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKEHPDVAKQLNNLALLCQN---- 389
A N + + P + +E ++ + H + QLN+L ++
Sbjct: 598 HARQQQNERLRKQFGAQANVIGPWIQTKMEEIGRISIEMHGTLEDQLNHLRQYEKSIVNY 657
Query: 390 QSKYEEVERYYQRALE 405
+ K +++E +Q+ E
Sbjct: 658 KPKIDQLEGDHQQIQE 673
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA
complex, transcription/DNA complex; 3.00A {Homo sapiens}
SCOP: h.1.3.1
Length = 61
Score = 25.8 bits (57), Expect = 8.4
Identities = 8/38 (21%), Positives = 19/38 (50%)
Query: 84 QVMTALAGHLQNVEAEKQKLRTQVRRLVQENAWLRDEL 121
+ +L +++ + +L+++V L E A L+ L
Sbjct: 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59
>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli}
Length = 140
Score = 27.2 bits (61), Expect = 8.5
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 250 GKYEAAETLEDCALRSRKESYDIVKQAKVAQILGSGGHDHPD 291
GK E E+ +R +E I +A V + + S +
Sbjct: 42 GKVEPDESQRQALVRELREELGI--EATVGEYVASHQREVSG 81
>2b06_A MUTT/nudix family protein; structural genomics, P protein structure
initiative, midwest center for structural genomics,
MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1
Length = 155
Score = 27.4 bits (61), Expect = 8.9
Identities = 9/52 (17%), Positives = 15/52 (28%), Gaps = 6/52 (11%)
Query: 250 GKYEAAETLEDCALRSRKE--SYDIVKQAKVAQILGSGGHDHPDVATMLNIL 299
G E E + +R E I + Q++G + I
Sbjct: 43 GHVENDEAFAESVIREIYEETGLTI----QNPQLVGIKNWPLDTGGRYIVIC 90
>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics,
structural genomics consortium, SGC, NU MUTT-like,
hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB:
1iry_A 3zr0_A* 3zr1_A
Length = 176
Score = 27.4 bits (61), Expect = 9.3
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 6/44 (13%)
Query: 250 GKYEAAETLEDCALRSRKE--SYDIVKQAKVAQILGSGGHDHPD 291
GK + ET+ED A R +E + +G +
Sbjct: 57 GKVQEGETIEDGARRELQEESGLTV----DALHKVGQIVFEFVG 96
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.311 0.128 0.355
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,926,459
Number of extensions: 476403
Number of successful extensions: 3323
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1608
Number of HSP's successfully gapped: 567
Length of query: 546
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 448
Effective length of database: 3,965,535
Effective search space: 1776559680
Effective search space used: 1776559680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 60 (26.8 bits)