Query psy5970
Match_columns 169
No_of_seqs 177 out of 784
Neff 6.1
Searched_HMMs 29240
Date Fri Aug 16 23:17:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5970.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5970hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l6j_A Matrix metalloproteinas 100.0 6.6E-44 2.3E-48 315.7 12.9 150 3-160 24-194 (425)
2 1eak_A 72 kDa type IV collagen 100.0 2E-43 6.8E-48 312.2 13.8 147 3-160 17-185 (421)
3 1ck7_A Protein (gelatinase A); 100.0 3.6E-41 1.2E-45 310.5 13.5 147 3-160 19-187 (631)
4 1slm_A Stromelysin-1; hydrolas 100.0 5.6E-39 1.9E-43 268.0 11.9 148 3-158 15-187 (255)
5 1su3_A Interstitial collagenas 100.0 4.3E-36 1.5E-40 267.5 10.6 148 3-158 13-185 (450)
6 3ma2_D Matrix metalloproteinas 99.9 1E-23 3.5E-28 167.9 6.7 84 75-159 1-112 (181)
7 830c_A MMP-13, MMP-13; matrix 99.8 1.8E-21 6.3E-26 153.1 6.5 85 74-159 2-106 (168)
8 2ovx_A Matrix metalloproteinas 99.7 1.4E-18 4.6E-23 135.0 6.7 82 77-159 2-103 (159)
9 1k7i_A PROC, secreted protease 99.7 2.1E-19 7.1E-24 161.2 1.9 101 29-145 21-152 (479)
10 1kap_P Alkaline protease; calc 99.7 1.7E-19 5.6E-24 161.8 -0.2 102 30-145 13-146 (479)
11 2y6d_A Matrilysin; hydrolase; 99.7 3.5E-18 1.2E-22 134.6 7.0 86 73-159 2-107 (174)
12 3ayu_A 72 kDa type IV collagen 99.7 7.3E-18 2.5E-22 132.0 6.8 84 74-158 2-105 (167)
13 2xs4_A Karilysin protease; hyd 99.7 1.3E-17 4.5E-22 129.8 6.3 84 75-159 1-108 (167)
14 1hv5_A Stromelysin 3; inhibiti 99.7 1.2E-17 4.2E-22 130.0 5.4 84 75-159 2-105 (165)
15 1y93_A Macrophage metalloelast 99.7 3.6E-17 1.2E-21 127.0 6.5 79 79-158 2-100 (159)
16 1rm8_A MMP-16, matrix metallop 99.7 5.8E-17 2E-21 126.5 6.6 80 79-159 1-107 (169)
17 1i76_A MMP-8;, neutrophil coll 99.7 5.3E-17 1.8E-21 126.4 6.3 83 75-158 2-104 (163)
18 1hy7_A Stromelysin-1, MMP-3; m 99.6 1.5E-16 5.1E-21 124.7 6.9 84 74-158 2-105 (173)
19 1cge_A Fibroblast collagenase; 99.6 1.7E-16 5.7E-21 124.0 6.0 82 76-158 2-103 (168)
20 1sat_A Serratia protease; para 99.6 4.4E-17 1.5E-21 145.8 0.9 102 36-159 18-155 (471)
21 3ba0_A Macrophage metalloelast 99.6 8.3E-16 2.8E-20 133.4 6.6 80 79-159 1-100 (365)
22 1g9k_A Serralysin; beta jelly 99.6 1.6E-16 5.5E-21 141.9 -0.2 103 36-158 20-152 (463)
23 2jsd_A Matrix metalloproteinas 99.6 3.7E-15 1.3E-19 114.9 6.2 80 78-158 1-100 (160)
24 3edh_A Bone morphogenetic prot 97.8 1.8E-05 6E-10 63.4 5.0 58 79-139 7-72 (201)
25 3lq0_A Proastacin; metallopept 97.6 4.1E-05 1.4E-09 62.7 3.6 43 79-123 41-83 (235)
26 1c7k_A NCNP, zinc endoprotease 97.4 0.00011 3.6E-09 55.6 3.5 53 86-146 3-58 (132)
27 3lqb_A Hatching enzyme, LOC792 96.2 0.0032 1.1E-07 50.2 3.8 44 78-123 8-57 (199)
28 1lbu_A Muramoyl-pentapeptide c 94.0 0.046 1.6E-06 43.1 4.0 54 3-57 20-76 (213)
29 3bkh_A Phikz144, lytic transgl 91.9 0.15 5.2E-06 41.9 4.3 51 3-56 22-75 (268)
30 4fet_B Spore cortex-lytic enzy 88.8 0.079 2.7E-06 42.8 0.0 53 3-56 17-70 (222)
31 3d2y_A N-acetylmuramoyl-L-alan 88.2 0.63 2.1E-05 38.1 5.0 50 3-55 201-252 (261)
32 4gwm_A Meprin A subunit beta; 40.7 24 0.00083 32.1 4.1 42 80-123 47-88 (592)
33 3f14_A Uncharacterized NTF2-li 22.4 46 0.0016 22.2 2.1 71 86-158 28-106 (112)
34 2nn4_A Hypothetical protein YQ 20.7 59 0.002 21.6 2.2 40 5-51 8-49 (72)
No 1
>1l6j_A Matrix metalloproteinase-9; twisted beta sheet flanked by helices, hydrolase; 2.50A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2
Probab=100.00 E-value=6.6e-44 Score=315.70 Aligned_cols=150 Identities=21% Similarity=0.331 Sum_probs=120.3
Q ss_pred HHHHHHHHhcCCCCCCCCchhhccCCHHHHHHh-HhcCCCccccCCHHHHHhhcCCCCCCCCCCCcccccccccccCCCc
Q psy5970 3 TILQSYLANFGYLEASSNSEIANLRTKEQVTEA-RFGNIPVTGIVDDATLALMKKPRCGLPDTPPLDRRRTKRFTLDGRK 81 (169)
Q Consensus 3 ~~~k~YL~kfGYL~~~~~~~~~~l~~~~~l~~a-~f~gL~~TG~LD~~T~~~M~~PRCGvpD~~~~~~~r~~ry~~~~~k 81 (169)
+++|+||++||||++ ...........++|++. +|+|||+||+||++|+++|++|||||||+. .++++++++|
T Consensus 24 ~~a~~yL~~yGYl~~-~~~~~~~~~l~~Ai~~~Q~f~gL~vTG~LD~~T~~~M~~PRCGvpD~~------~~~~~~~~~k 96 (425)
T 1l6j_A 24 QLAEEYLYRYGYTRV-AEMRGESKSLGPALLLLQKQLSLPETGELDSATLKAMRTPRCGVPDLG------RFQTFEGDLK 96 (425)
T ss_dssp HHHHHHHHHTTCC------------CHHHHHHHHHHHTCCCCSSCCHHHHHHHTSCBCSSCSSS------CSSCCSSCSS
T ss_pred HHHHHHHHHcCCCCC-cccccchHHHHHHHHHHHHHcCCCCCCccCHHHHHHhcCCCCCCcccc------ccccccCCcc
Confidence 568999999999987 33211111123445555 999999999999999999999999999985 3456678899
Q ss_pred cccccceeEEecCCchhhHHHH----HHHhhhhcccccccceEecccc---------cccCCCCCCcccCCCeeeccc--
Q psy5970 82 WDHTDLTWRVLSRVDSLIMKLL----LRSVGNIVNSVNSSDFTQNKTR---------CYENLCGVEMQCQQGKFSLVS-- 146 (169)
Q Consensus 82 W~k~~LTYrI~nyt~dL~~~~v----~rAf~k~Ws~vt~L~Fte~~~~---------~~~Hgd~~pFDG~gG~la~~~-- 146 (169)
|+|++|||+|.||+++|+.++| ++||+ +||+|+||+|+|+..+ .++|||++||||+||+||||.
T Consensus 97 W~k~~LTY~i~~~t~~l~~~~v~~~i~~Af~-~Ws~vt~L~F~ev~~~~ADI~I~F~~g~HgD~~pFDG~gg~LAHAf~P 175 (425)
T 1l6j_A 97 WHHHNITYWIQNYSEDLPRAVIDDAFARAFA-LWSAVTPLTFTRVYSRDADIVIQFGVAEHGDGYPFDGKDGLLAHAFPP 175 (425)
T ss_dssp CCSSEEEEEECCCCTTSCHHHHHHHHHHHHH-HHHHTSSCEEEEECSTTSSEEEEEECSSCSSSCCCCSTTSBCEEECCS
T ss_pred cccceeEEEEecCCCCCCHHHHHHHHHHHHH-HHhhcccceEEEccCCCCCEEEEEeeccCCCcccccCCCcccccccCC
Confidence 9999999999999999986654 56666 8999999999998643 578999999999999999995
Q ss_pred -----cccccccCcceEEE
Q psy5970 147 -----SLFKFLSQTKLVYS 160 (169)
Q Consensus 147 -----~~~~~~~~~~~~~~ 160 (169)
+-.|||++|.|+..
T Consensus 176 ~~g~~Gd~HFD~dE~Wt~~ 194 (425)
T 1l6j_A 176 GPGIQGDAHFDDDELWSLG 194 (425)
T ss_dssp SSTTTTCEEEETTSCEESS
T ss_pred CCCCCCceeeeeccccccC
Confidence 34999999999864
No 2
>1eak_A 72 kDa type IV collagenase; hydrolase-hydrolase inhibitor complex, hydrolyse, matrix metalloproteinase, gelatinase A, hydrolase- hydrolase inhib complex; 2.66A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1ks0_A 1cxw_A
Probab=100.00 E-value=2e-43 Score=312.21 Aligned_cols=147 Identities=22% Similarity=0.389 Sum_probs=122.2
Q ss_pred HHHHHHHHh-cCCCCCCCCchhhccCCHHHHHHh-HhcCCCccccCCHHHHHhhcCCCCCCCCCCCcccccccccccCCC
Q psy5970 3 TILQSYLAN-FGYLEASSNSEIANLRTKEQVTEA-RFGNIPVTGIVDDATLALMKKPRCGLPDTPPLDRRRTKRFTLDGR 80 (169)
Q Consensus 3 ~~~k~YL~k-fGYL~~~~~~~~~~l~~~~~l~~a-~f~gL~~TG~LD~~T~~~M~~PRCGvpD~~~~~~~r~~ry~~~~~ 80 (169)
+++|+||++ ||||++ .. ... ...++|++. +|+|||+||+||++|+++|++|||||||+. ..+++++++
T Consensus 17 ~~a~~yL~~~yGyl~~-~~-~~~--~~~~Ai~~~Q~f~gL~vTG~LD~~T~~~M~~PRCGvpD~~------~~~~~~~~~ 86 (421)
T 1eak_A 17 ELAVQYLNTFYGCPKE-SC-NLF--VLKDTLKKMQKFFGLPQTGDLDQNTIETMRKPRCGNPDVA------NYNFFPRKP 86 (421)
T ss_dssp HHHHHHHHHHTCCCSS-CC-CHH--HHHHHHHHHHHHSSCCCCCSCCHHHHHHHTSCBCSSCSSC------SSCCSSCCC
T ss_pred HHHHHHHHHhcCCCCC-CC-chH--HHHHHHHHHHHHcCCCCCCccCHHHHHHhcCCCCCCCCcc------ccccccCCc
Confidence 567999999 999987 32 100 012334444 999999999999999999999999999985 345667889
Q ss_pred ccccccceeEEecCCchhhHHHH----HHHhhhhcccccccceEeccc---------ccccCCCCCCcccCCCeeeccc-
Q psy5970 81 KWDHTDLTWRVLSRVDSLIMKLL----LRSVGNIVNSVNSSDFTQNKT---------RCYENLCGVEMQCQQGKFSLVS- 146 (169)
Q Consensus 81 kW~k~~LTYrI~nyt~dL~~~~v----~rAf~k~Ws~vt~L~Fte~~~---------~~~~Hgd~~pFDG~gG~la~~~- 146 (169)
||+|++|||+|.||+++|++++| ++||+ +||+|+||+|+|+.. ..++|||++||||+||+||||+
T Consensus 87 kW~k~~LTY~i~~~~~~l~~~~v~~~i~~AF~-~Ws~vtpLtF~ev~~~~ADI~I~F~~g~HgD~~pFDG~gg~LAHAf~ 165 (421)
T 1eak_A 87 KWDKNQITYRIIGYTPDLDPETVDDAFARAFQ-VWSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFA 165 (421)
T ss_dssp CCSSSEEEEEECCCCTTSCHHHHHHHHHHHHH-HHHTSSSCEEEECCSSCCSEEEEEECSSCSSSCCCCSSSSBCEEECC
T ss_pred ccccceEEEEEecCCCCCCHHHHHHHHHHHHH-HHhcccCceeEEcCCCCCCEEEEEecCCCCCccccCCCCCccccccC
Confidence 99999999999999999986654 56666 899999999999864 3578999999999999999994
Q ss_pred ------cccccccCcceEEE
Q psy5970 147 ------SLFKFLSQTKLVYS 160 (169)
Q Consensus 147 ------~~~~~~~~~~~~~~ 160 (169)
+-.|||++|.|+..
T Consensus 166 P~~g~~Gd~HFD~dE~Wt~~ 185 (421)
T 1eak_A 166 PGTGVGGDSHFDDDELWTLG 185 (421)
T ss_dssp SSSTTTTCEEEETTSCEESS
T ss_pred CCCCCCCceeeeeccceecc
Confidence 56999999999853
No 3
>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length, metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1gxd_A
Probab=100.00 E-value=3.6e-41 Score=310.55 Aligned_cols=147 Identities=22% Similarity=0.389 Sum_probs=121.8
Q ss_pred HHHHHHHHh-cCCCCCCCCchhhccCCHHHHHHh-HhcCCCccccCCHHHHHhhcCCCCCCCCCCCcccccccccccCCC
Q psy5970 3 TILQSYLAN-FGYLEASSNSEIANLRTKEQVTEA-RFGNIPVTGIVDDATLALMKKPRCGLPDTPPLDRRRTKRFTLDGR 80 (169)
Q Consensus 3 ~~~k~YL~k-fGYL~~~~~~~~~~l~~~~~l~~a-~f~gL~~TG~LD~~T~~~M~~PRCGvpD~~~~~~~r~~ry~~~~~ 80 (169)
+++++||++ ||||++ .. ... ...++|++. +|+|||+||+||++|+++|++|||||||+. +.+++++++
T Consensus 19 ~~~~~yL~~~ygyl~~-~~-~~~--~~~~al~~~Q~~~gL~~TG~lD~~T~~~m~~PRCGvpD~~------~~~~~~~~~ 88 (631)
T 1ck7_A 19 ELAVQYLNTFYGCPKE-SC-NLF--VLKDTLKKMQKFFGLPQTGDLDQNTIETMRKPRCGNPDVA------NYNFFPRKP 88 (631)
T ss_dssp HHHHHHHHHHTCCCTT-TC-SHH--HHHHHHHHHHHHHTCCSCSSCCHHHHHHTTSCBCSSCSSC------SCSSSCSSC
T ss_pred HHHHHHHHHhcCCCCC-CC-chH--HHHHHHHHHHHHcCCCCccccCHHHHHHhcCCCCCCCCcc------ccccccCCc
Confidence 568999999 999987 32 100 112334444 999999999999999999999999999985 345666788
Q ss_pred ccccccceeEEecCCchhhHHH----HHHHhhhhcccccccceEecccc---------cccCCCCCCcccCCCeeeccc-
Q psy5970 81 KWDHTDLTWRVLSRVDSLIMKL----LLRSVGNIVNSVNSSDFTQNKTR---------CYENLCGVEMQCQQGKFSLVS- 146 (169)
Q Consensus 81 kW~k~~LTYrI~nyt~dL~~~~----v~rAf~k~Ws~vt~L~Fte~~~~---------~~~Hgd~~pFDG~gG~la~~~- 146 (169)
||+|++|||+|.||+++|+.++ +++||+ +||+|+||+|+|+..+ .++|||++||||+||+||||.
T Consensus 89 kW~k~~LTy~i~~~~~~l~~~~v~~~~~~Af~-~Ws~vt~L~F~ev~~~~ADI~I~F~~~~Hgd~~pFDG~gg~LAHAf~ 167 (631)
T 1ck7_A 89 KWDKNQITYRIIGYTPDLDPETVDDAFARAFQ-VWSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAFA 167 (631)
T ss_dssp SCSCSEEEEEECCCCTTSCHHHHHHHHHHHHH-HHHTTSSCEEEECSSSCCSEEEEEECSSCSSSCCCCSSSSBCEEECC
T ss_pred ccccccceEEEecCCCCcCHHHHHHHHHHHHH-HHhhccceeEEEccCCCCCEEEEEecCCCCCcccccCCCcccccccc
Confidence 9999999999999999998665 456666 8999999999998653 478999999999999999994
Q ss_pred ------cccccccCcceEEE
Q psy5970 147 ------SLFKFLSQTKLVYS 160 (169)
Q Consensus 147 ------~~~~~~~~~~~~~~ 160 (169)
+-.|||++|.|+..
T Consensus 168 P~~g~~Gd~HfD~dE~Wt~~ 187 (631)
T 1ck7_A 168 PGTGVGGDSHFDDDELWTLG 187 (631)
T ss_dssp SSSTTTTCEEEETTSCEESS
T ss_pred CCcccCCccccccccccccC
Confidence 45999999999853
No 4
>1slm_A Stromelysin-1; hydrolase, metalloprotease, fibroblast, collagen degradation; 1.90A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11
Probab=100.00 E-value=5.6e-39 Score=267.95 Aligned_cols=148 Identities=22% Similarity=0.323 Sum_probs=120.5
Q ss_pred HHHHHHHHhcCCCCCCCCchhhccCCHHHHHHh-----HhcCCCccccCCHHHHHhhcCCCCCCCCCCCccccccccccc
Q psy5970 3 TILQSYLANFGYLEASSNSEIANLRTKEQVTEA-----RFGNIPVTGIVDDATLALMKKPRCGLPDTPPLDRRRTKRFTL 77 (169)
Q Consensus 3 ~~~k~YL~kfGYL~~~~~~~~~~l~~~~~l~~a-----~f~gL~~TG~LD~~T~~~M~~PRCGvpD~~~~~~~r~~ry~~ 77 (169)
+++|+||++||||++ .....+.+.+.+++++| +|+||++||+||++|+++|++|||||||+. .++|++
T Consensus 15 ~~~~~yL~~~gyl~~-~~~~~~~~~~~~~~~~ai~~~Q~~~~l~~tG~ld~~t~~~m~~pRCgv~d~~------~~~~~~ 87 (255)
T 1slm_A 15 NLVQKYLENYYDLKK-DVKQFVRRKDSGPVVKKIREMQKFLGLEVTGKLDSDTLEVMRKPRCGVPDVG------HFRTFP 87 (255)
T ss_dssp -CHHHHHHHHSCCCC-C---------CHHHHHHHHHHHHHTTCCCCSSCCHHHHHHTTSCBCSSCSSS------CCSSCC
T ss_pred HHHHHHHHHcCCCCC-cccccccccchHHHHHHHHHHHHHcCCCCccccCHHHHHHhcCCCCCccccc------ceeecc
Confidence 468999999999987 43333333345556666 999999999999999999999999999985 357888
Q ss_pred CCCccccccceeEEecCCchhhH----HHHHHHhhhhcccccccceEecccc---------cccCCCCCCcccCCCeeec
Q psy5970 78 DGRKWDHTDLTWRVLSRVDSLIM----KLLLRSVGNIVNSVNSSDFTQNKTR---------CYENLCGVEMQCQQGKFSL 144 (169)
Q Consensus 78 ~~~kW~k~~LTYrI~nyt~dL~~----~~v~rAf~k~Ws~vt~L~Fte~~~~---------~~~Hgd~~pFDG~gG~la~ 144 (169)
++.||.+++|||+|.+++++++. +.|++||+ .|++|++|+|+|+..+ .++|||++||||++|+|||
T Consensus 88 ~~~kW~~~~ltY~i~~~~~~l~~~~~~~~i~~A~~-~W~~vt~l~F~e~~~~~adI~I~f~~~~hgd~~~fdG~~g~lah 166 (255)
T 1slm_A 88 GIPKWRKTHLTYRIVNYTPDLPKDAVDSAVEKALK-VWEEVTPLTFSRLYEGEADIMISFAVREHGDFYPFDGPGNVLAH 166 (255)
T ss_dssp CCSSCSCSEEEEEECCCCTTSCHHHHHHHHHHHHH-HHHTTSSCEEEECSSSCCSEEEEEECSCCSSSCCCCSSSSBCEE
T ss_pred CCCcCCCCccceEeccCCCCCCHHHHHHHHHHHHH-HHHhcCCeeEEEecCCCcceeeeeeccCCCCccceeCCCCeeee
Confidence 88999999999999999988764 45678887 7999999999997532 3589999999999999999
Q ss_pred cc-------cccccccCcceE
Q psy5970 145 VS-------SLFKFLSQTKLV 158 (169)
Q Consensus 145 ~~-------~~~~~~~~~~~~ 158 (169)
|. +-.||++++.|.
T Consensus 167 A~~P~~~~~G~ihfd~~e~w~ 187 (255)
T 1slm_A 167 AYAPGPGINGDAHFDDDEQWT 187 (255)
T ss_dssp ECCSSSTTTTCEEEETTSCEE
T ss_pred eecCCCCcCceEEeCCCCccc
Confidence 84 678999999986
No 5
>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*
Probab=100.00 E-value=4.3e-36 Score=267.51 Aligned_cols=148 Identities=23% Similarity=0.372 Sum_probs=113.0
Q ss_pred HHHHHHHHhcCCCCCCCCchhhccCCHHHHHHh-----HhcCCCccccCCHHHHHhhcCCCCCCCCCCCccccccccccc
Q psy5970 3 TILQSYLANFGYLEASSNSEIANLRTKEQVTEA-----RFGNIPVTGIVDDATLALMKKPRCGLPDTPPLDRRRTKRFTL 77 (169)
Q Consensus 3 ~~~k~YL~kfGYL~~~~~~~~~~l~~~~~l~~a-----~f~gL~~TG~LD~~T~~~M~~PRCGvpD~~~~~~~r~~ry~~ 77 (169)
+++|+||++||||++ .......+.+.+++++| +|+||++||+||++|+++|++|||||||+. ..++++
T Consensus 13 ~~~~~yL~~~gyl~~-~~~~~~~~~~~~~~~~ai~~~Q~~~~l~~tG~ld~~t~~~m~~prCg~~d~~------~~~~~~ 85 (450)
T 1su3_A 13 DLVQKYLEKYYNLKN-DGRQVEKRRNSGPVVEKLKQMQEFFGLKVTGKPDAETLKVMKQPRCGVPDVA------QFVLTE 85 (450)
T ss_dssp CHHHHHHHHHSCCC-------------CHHHHHHHHHHHHTTCCCCSSCCHHHHHHHTSCBCSSCSCC------------
T ss_pred HHHHHHHHHhCCCCC-cccccccccchHHHHHHHHHHHHHcCCCCccccCHHHHHHhcCCCCCCCCcc------ceeecc
Confidence 478999999999986 33332233345556666 999999999999999999999999999985 234556
Q ss_pred CCCccccccceeEEecCCchhhH----HHHHHHhhhhcccccccceEecccc---------cccCCCCCCcccCCCeeec
Q psy5970 78 DGRKWDHTDLTWRVLSRVDSLIM----KLLLRSVGNIVNSVNSSDFTQNKTR---------CYENLCGVEMQCQQGKFSL 144 (169)
Q Consensus 78 ~~~kW~k~~LTYrI~nyt~dL~~----~~v~rAf~k~Ws~vt~L~Fte~~~~---------~~~Hgd~~pFDG~gG~la~ 144 (169)
++.+|.+++|||+|.+++++++. +.|++||+ .|++|++|+|+|+..+ .++|||++||||++|+|||
T Consensus 86 ~~~~W~~~~ltY~i~~~~~~l~~~~~~~~i~~A~~-~W~~vt~l~F~ev~~~~adI~I~f~~~~hgd~~~fdG~~g~lah 164 (450)
T 1su3_A 86 GNPRWEQTHLTYRIENYTPDLPRADVDHAIEKAFQ-LWSNVTPLTFTKVSEGQADIMISFVRGDHRDNSPFDGPGGNLAH 164 (450)
T ss_dssp --CCCSSSEEEEEECCCCTTSCHHHHHHHHHHHHH-HHHTTSSCEEEECSSSCCSEEEEEECSCCSSSCCCCSSSSBCEE
T ss_pred CCCcCCCCcceEEecCCCCCCCHHHHHHHHHHHHH-HHhccCceeEEEecCCCCCEEEEEeccCCCCccceecCCCeeee
Confidence 78899999999999999988864 45677887 7999999999998532 3589999999999999999
Q ss_pred cc-------cccccccCcceE
Q psy5970 145 VS-------SLFKFLSQTKLV 158 (169)
Q Consensus 145 ~~-------~~~~~~~~~~~~ 158 (169)
|. +-.||++++.|.
T Consensus 165 A~~P~~~~~g~~hfd~~e~w~ 185 (450)
T 1su3_A 165 AFQPGPGIGGDAHFDEDERWT 185 (450)
T ss_dssp ECCSSSTTTTCEEEETTSCCB
T ss_pred eecCCCCcCcceEeccccccc
Confidence 83 568999999986
No 6
>3ma2_D Matrix metalloproteinase-14; protein - protein complex, cleavage on PAIR of basic residue disulfide bond, membrane, metal-binding; 2.05A {Homo sapiens} SCOP: d.92.1.11 PDB: 1bqq_M 1buv_M
Probab=99.89 E-value=1e-23 Score=167.90 Aligned_cols=84 Identities=12% Similarity=0.132 Sum_probs=70.6
Q ss_pred cccCCCccccccceeEEecCCchhhHH----HHHHHhhhhcccccccceEeccc-----------------ccccCCCCC
Q psy5970 75 FTLDGRKWDHTDLTWRVLSRVDSLIMK----LLLRSVGNIVNSVNSSDFTQNKT-----------------RCYENLCGV 133 (169)
Q Consensus 75 y~~~~~kW~k~~LTYrI~nyt~dL~~~----~v~rAf~k~Ws~vt~L~Fte~~~-----------------~~~~Hgd~~ 133 (169)
|++.++||+|++|||+|.|||++|+++ +|++||+ +||+|++|+|+|+.. ..++|||++
T Consensus 1 y~~~g~kW~k~~LTY~i~n~t~~l~~~~v~~ai~~Af~-~Ws~vt~L~F~ev~~~~~~~~~~~~ADI~I~F~~~~hgd~~ 79 (181)
T 3ma2_D 1 YAIQGLKWQHNEITFCIQNYTPKVGEYATYEAIRKAFR-VWESATPLRFREVPYAYIREGHEKQADIMIFFAEGFHGDST 79 (181)
T ss_dssp ---CCCCCSSSEEEEEECCCCTTTCHHHHHHHHHHHHH-HHHHHSSCEEEECCHHHHHTTSSCCCSEEEEEECSCCSSSS
T ss_pred CCCCCCCCCCCEEEEEEccCCCCCCHHHHHHHHHHHHH-HHHhcCCcceEEcccccccccccccCcEEEEeecccCCCCC
Confidence 567789999999999999999998655 4567776 899999999999852 246899999
Q ss_pred CcccCCCeeeccc-------cccccccCcceEE
Q psy5970 134 EMQCQQGKFSLVS-------SLFKFLSQTKLVY 159 (169)
Q Consensus 134 pFDG~gG~la~~~-------~~~~~~~~~~~~~ 159 (169)
||||+||+||||. +--|||++|.|+.
T Consensus 80 ~FDG~gg~lAhAf~P~~~~~Gd~hfd~~e~wt~ 112 (181)
T 3ma2_D 80 PFDGEGGFLAHAYFPGPNIGGDTHFDSAEPWTV 112 (181)
T ss_dssp CCCSSSSEEEEECCSCSTTTTCEEEETTSCEEC
T ss_pred cccCCCCeeeeccCCCCCCCCceEecCcccccc
Confidence 9999999999993 5699999999975
No 7
>830c_A MMP-13, MMP-13; matrix metalloprotease; HET: RS1; 1.60A {Homo sapiens} SCOP: d.92.1.11 PDB: 456c_A* 1you_A* 4a7b_A* 3tvc_A* 1eub_A* 1xuc_A* 1xud_A* 1xur_A* 2yig_A* 3elm_A* 3i7g_A* 3i7i_A* 3zxh_A* 2ow9_A* 2ozr_A* 3kek_A* 3kej_A* 3kec_A* 2d1n_A* 1fls_A* ...
Probab=99.84 E-value=1.8e-21 Score=153.10 Aligned_cols=85 Identities=13% Similarity=0.133 Sum_probs=73.0
Q ss_pred ccccCCCccccccceeEEecCCchhhHHH----HHHHhhhhcccccccceEecccc---------cccCCCCCCcccCCC
Q psy5970 74 RFTLDGRKWDHTDLTWRVLSRVDSLIMKL----LLRSVGNIVNSVNSSDFTQNKTR---------CYENLCGVEMQCQQG 140 (169)
Q Consensus 74 ry~~~~~kW~k~~LTYrI~nyt~dL~~~~----v~rAf~k~Ws~vt~L~Fte~~~~---------~~~Hgd~~pFDG~gG 140 (169)
.++++++||+|++|||+|.|||++|+.++ |++||+ +|++|++|+|+|+..+ .++|||++||||+||
T Consensus 2 ~~~~~~~kW~k~~LTY~I~n~t~~l~~~~v~~ai~~A~~-~Ws~vt~L~F~ev~~~~AdI~I~F~~~~hgd~~~fdg~gg 80 (168)
T 830c_A 2 NVFPRTLKWSKMNLTYRIVNYTPDMTHSEVEKAFKKAFK-VWSDVTPLNFTRLHDGIADIMISFGIKEHGDFYPFDGPSG 80 (168)
T ss_dssp EECCSBCCCSSSEEEEEECSCCTTSCHHHHHHHHHHHHH-HHHTTSSCEEEEESSSCCSEEEEEECSSCSSSCCCCSSSS
T ss_pred cccCCCCcCCCCEEEEEEecCCCCCCHHHHHHHHHHHHH-HHHhccCcceeeccCcccccceeecccccCCcccccCCCc
Confidence 46678899999999999999999987654 556666 7999999999998643 468999999999999
Q ss_pred eeeccc-------cccccccCcceEE
Q psy5970 141 KFSLVS-------SLFKFLSQTKLVY 159 (169)
Q Consensus 141 ~la~~~-------~~~~~~~~~~~~~ 159 (169)
+||||. +--|||++|.|+.
T Consensus 81 ~lAhAf~P~~~~~G~~hfd~~e~w~~ 106 (168)
T 830c_A 81 LLAHAFPPGPNYGGDAHFDDDETWTS 106 (168)
T ss_dssp CCEEECCSSSTTTTCEEEETTSCEES
T ss_pred eeeeccCCCCCCCCceEecccccccc
Confidence 999982 5689999999973
No 8
>2ovx_A Matrix metalloproteinase-9 (EC 3.4.24.35) (MMP-9) type IV collagenase) (92 kDa gelatinase)...; S1-prime pocket, hydrolase-hydrola inhibitor complex; HET: 4MR; 2.00A {Homo sapiens} SCOP: d.92.1.11 PDB: 2ovz_A* 2ow0_A* 2ow1_A* 2ow2_A* 1gkd_A* 1gkc_A*
Probab=99.75 E-value=1.4e-18 Score=134.97 Aligned_cols=82 Identities=17% Similarity=0.230 Sum_probs=69.9
Q ss_pred cCCCccccccceeEEecCCchhhH----HHHHHHhhhhcccccccceEecccc---------cccCCCCCCcccCCCeee
Q psy5970 77 LDGRKWDHTDLTWRVLSRVDSLIM----KLLLRSVGNIVNSVNSSDFTQNKTR---------CYENLCGVEMQCQQGKFS 143 (169)
Q Consensus 77 ~~~~kW~k~~LTYrI~nyt~dL~~----~~v~rAf~k~Ws~vt~L~Fte~~~~---------~~~Hgd~~pFDG~gG~la 143 (169)
+++.||++++|||+|.+++++++. +.|++||+ .|++|++|+|+|+..+ .++|||++||||++|+||
T Consensus 2 ~~~~~W~~~~lty~i~~~~~~l~~~~~~~~i~~A~~-~W~~~~~l~F~e~~~~~adI~I~f~~~~~gd~~~fdG~~g~la 80 (159)
T 2ovx_A 2 EGDLKWHHHNITYWIQNYSEDLPRAVIDDAFARAFA-LWSAVTPLTFTRVYSRDADIVIQFGVAEHGDGYPFDGKDGLLA 80 (159)
T ss_dssp CCSCCCSCSEEEEEECCCCTTSCHHHHHHHHHHHHH-HHHTSSSCEEEECSSTTSSEEEEEECSSCSSSCCCCSSSSCCE
T ss_pred CCCCccCCceEEEEEeCCCCCCCHHHHHHHHHHHHH-HHHccCCeeEEEecCCCCceEEEEeeccCCCCccccCCCCeEE
Confidence 567899999999999999988764 45677777 7999999999998542 357999999999999999
Q ss_pred ccc-------cccccccCcceEE
Q psy5970 144 LVS-------SLFKFLSQTKLVY 159 (169)
Q Consensus 144 ~~~-------~~~~~~~~~~~~~ 159 (169)
|+. +-.||++++.|..
T Consensus 81 ~a~~P~~~~~g~~~fd~~e~w~~ 103 (159)
T 2ovx_A 81 HAFPPGPGIQGDAHFDDDELWSL 103 (159)
T ss_dssp EECCSSSTTTTCEEEETTSCEEC
T ss_pred EEEcCCCCccceEEEccccceec
Confidence 983 6789999999863
No 9
>1k7i_A PROC, secreted protease C; metalloprotease, hydrolase; 1.59A {Erwinia chrysanthemi} SCOP: b.80.7.1 d.92.1.6 PDB: 1k7g_A 1k7q_A 1go8_P 3hbv_P 3hda_P 3hbu_P 1go7_P 3hb2_P
Probab=99.74 E-value=2.1e-19 Score=161.17 Aligned_cols=101 Identities=16% Similarity=0.227 Sum_probs=80.2
Q ss_pred HHHHHHh-HhcCCCccccCCHHHHHhhcCCCCCCCCCCCcccccccccccCCCccc-------cccceeEEecCCchh--
Q psy5970 29 KEQVTEA-RFGNIPVTGIVDDATLALMKKPRCGLPDTPPLDRRRTKRFTLDGRKWD-------HTDLTWRVLSRVDSL-- 98 (169)
Q Consensus 29 ~~~l~~a-~f~gL~~TG~LD~~T~~~M~~PRCGvpD~~~~~~~r~~ry~~~~~kW~-------k~~LTYrI~nyt~dL-- 98 (169)
.+.+++. +|++|++|| +|+++|.+|||||||+. ..+.+.+.||+ +++|||+|.++++++
T Consensus 21 ~~al~~~Q~f~~l~~tG----~tl~~m~kPrCgv~d~~-------~~l~~~~~kW~~~~~~~~~~~LTY~f~~~~~~~~~ 89 (479)
T 1k7i_A 21 SSAYNSVYDFLRYHDRG----DGLTVNGKTSYSIDQAA-------AQITRENVSWNGTNVFGKSANLTFKFLQSVSSIPS 89 (479)
T ss_dssp CHHHHHHHHHTTTTCCS----TTCEETTEECCCHHHHH-------HHHTTTCEETTEESCCSCCEEEEEEECSCCSCCTT
T ss_pred HHHHHHHHHHhCCCCcC----cchhhhcCCCCCCcchh-------hhhccCCCccCCccccCCCceEEEEEeCCCCcccc
Confidence 4456666 999999999 89999999999999974 23566778998 999999999998643
Q ss_pred --------h---HHHHHHHhhhhcccccccceEecccc--------c--ccCCCCCCcccCCCeeecc
Q psy5970 99 --------I---MKLLLRSVGNIVNSVNSSDFTQNKTR--------C--YENLCGVEMQCQQGKFSLV 145 (169)
Q Consensus 99 --------~---~~~v~rAf~k~Ws~vt~L~Fte~~~~--------~--~~Hgd~~pFDG~gG~la~~ 145 (169)
+ ++.+++||+ +||+|++|+|+|+... . +.|++.++ ||+||||
T Consensus 90 ~~~~~~~ls~~~~~~i~~Af~-~Ws~vt~L~F~ev~~~~~adI~f~~~~~~~~g~~~----gg~lAhA 152 (479)
T 1k7i_A 90 GDTGFVKFNAEQIEQAKLSLQ-SWSDVANLTFTEVTGNKSANITFGNYTRDASGNLD----YGTQAYA 152 (479)
T ss_dssp SCBCCBCCCHHHHHHHHHHHH-HHHTTBSEEEEECCTTCCCSEEEEEECBCTTSCBC----CSCCEEE
T ss_pred cccccccCCHHHHHHHHHHHH-HHhcccceeEEEeCCCCCeeEEEEEecCCCCCccc----ccceeEe
Confidence 3 456788988 8999999999998643 1 23334433 8999998
No 10
>1kap_P Alkaline protease; calcium binding protein, zinc metalloprotease; 1.64A {Pseudomonas aeruginosa} SCOP: b.80.7.1 d.92.1.6 PDB: 1jiw_P 1akl_A
Probab=99.73 E-value=1.7e-19 Score=161.84 Aligned_cols=102 Identities=11% Similarity=0.158 Sum_probs=81.6
Q ss_pred HHHHHh-HhcCCCccccCCHHHHHhhcCCCCCCCCCCCcccccccccccCCCcccc------ccceeEEecCCch---h-
Q psy5970 30 EQVTEA-RFGNIPVTGIVDDATLALMKKPRCGLPDTPPLDRRRTKRFTLDGRKWDH------TDLTWRVLSRVDS---L- 98 (169)
Q Consensus 30 ~~l~~a-~f~gL~~TG~LD~~T~~~M~~PRCGvpD~~~~~~~r~~ry~~~~~kW~k------~~LTYrI~nyt~d---L- 98 (169)
+.+++. +|++|++|| +|+++|++||||+||+. +++.+.+.||.+ ++|||+|.+++++ +
T Consensus 13 ~a~~~~Q~f~~l~~tG----~t~~~m~~Prcgv~d~~-------~~~~~~~~kW~~~~~~~~~~LTYsf~~~~~~~~~~~ 81 (479)
T 1kap_P 13 DAYTQVDNFLHAYARG----GDELVNGHPSYTVDQAA-------EQILREQASWQKAPGDSVLTLSYSFLTKPNDFFNTP 81 (479)
T ss_dssp HHHHHHHHHHTTTCCC----SSSEETTEECCCHHHHH-------HHHTTTCCCCCCCTTCSSEEEEEEECSSCCHHHHCG
T ss_pred HHHHHHHHHcCCCccC----hhhHhhCCCCCCCccHH-------HhhccCCCCCCCCCCCCccEEEEEEECCCcccccCc
Confidence 456666 999999999 79999999999999974 567777889985 6999999998866 2
Q ss_pred -------------------hHHHHHHHhhhhcccccccceEecccccccCCCC-C-CcccCCCeeecc
Q psy5970 99 -------------------IMKLLLRSVGNIVNSVNSSDFTQNKTRCYENLCG-V-EMQCQQGKFSLV 145 (169)
Q Consensus 99 -------------------~~~~v~rAf~k~Ws~vt~L~Fte~~~~~~~Hgd~-~-pFDG~gG~la~~ 145 (169)
.++.+++||+ .|++|++|+|+|+... ...|= + -|||++|++|||
T Consensus 82 ~~~~~d~~~~~~f~~ls~~~~~~i~~Af~-~Ws~vt~L~F~ev~~~--~~AdI~i~f~~g~~G~lA~A 146 (479)
T 1kap_P 82 WKYVSDIYSLGKFSAFSAQQQAQAKLSLQ-SWSDVTNIHFVDAGQG--DQGDLTFGNFSSSVGGAAFA 146 (479)
T ss_dssp GGTCSSCSCCCCCBCCCHHHHHHHHHHHH-HHHTTBSEEEEEEEES--SCSSEEEEEECSCCSSSEEE
T ss_pred cccccccccccccccCCHHHHHHHHHHHH-HHhcccCeeEEEcCCC--CCccEEEEEecCCCCccEEE
Confidence 2456889998 7999999999998543 11221 1 278999999998
No 11
>2y6d_A Matrilysin; hydrolase; HET: TQJ; 1.60A {Homo sapiens} PDB: 2ddy_A* 1mmq_A* 1mmp_A* 1mmr_A* 2y6c_A*
Probab=99.73 E-value=3.5e-18 Score=134.57 Aligned_cols=86 Identities=10% Similarity=0.076 Sum_probs=73.2
Q ss_pred cccccCCCccccccceeEEecCCchhhH----HHHHHHhhhhcccccccceEecccc---------cccCCCCCCcccCC
Q psy5970 73 KRFTLDGRKWDHTDLTWRVLSRVDSLIM----KLLLRSVGNIVNSVNSSDFTQNKTR---------CYENLCGVEMQCQQ 139 (169)
Q Consensus 73 ~ry~~~~~kW~k~~LTYrI~nyt~dL~~----~~v~rAf~k~Ws~vt~L~Fte~~~~---------~~~Hgd~~pFDG~g 139 (169)
+++++++.||++++|||+|.+++++++. +.|++||+ .|++|++|+|+|+..+ .++|||++||||++
T Consensus 2 ~~~~~~~~~W~~~~ltY~i~~~~~~l~~~~~~~~i~~A~~-~W~~vt~l~F~ev~~~~adI~I~f~~~~hgd~~~fdG~~ 80 (174)
T 2y6d_A 2 YSLFPNSPKWTSKVVTYRIVSYTRDLPHITVDRLVSKALN-MWGKEIPLHFRKVVWGTADIMIGFARGAHGDSYPFDGPG 80 (174)
T ss_dssp CCBCTTCCCCCSSEEEEEECCCCTTSCHHHHHHHHHHHHH-HHHTTSSCEEEECCSSCCSEEEEEECSCCSSSCCCCSSS
T ss_pred ceeCCCCCccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHH-HHHhccCeeEEEecCCCccEEEEEeecCCCCccceeCCC
Confidence 4567888999999999999999998864 45678887 7999999999997532 35899999999999
Q ss_pred Ceeeccc-------cccccccCcceEE
Q psy5970 140 GKFSLVS-------SLFKFLSQTKLVY 159 (169)
Q Consensus 140 G~la~~~-------~~~~~~~~~~~~~ 159 (169)
|+|||+. +-.||++++.|..
T Consensus 81 g~la~a~~P~~~~~g~i~fd~~e~w~~ 107 (174)
T 2y6d_A 81 NTLAHAFAPGTGLGGDAHFDEDERWTD 107 (174)
T ss_dssp SCCEEECCSSSTTTTCEEEETTSCEES
T ss_pred CeeEEeecCCCCccceEEecccccccc
Confidence 9999984 6789999999863
No 12
>3ayu_A 72 kDa type IV collagenase; protease, hydrolase-hydrolase inhibitor complex; 2.00A {Homo sapiens} PDB: 1qib_A 1hov_A*
Probab=99.72 E-value=7.3e-18 Score=131.98 Aligned_cols=84 Identities=17% Similarity=0.261 Sum_probs=71.5
Q ss_pred ccccCCCccccccceeEEecCCchhhH----HHHHHHhhhhcccccccceEecccc---------cccCCCCCCcccCCC
Q psy5970 74 RFTLDGRKWDHTDLTWRVLSRVDSLIM----KLLLRSVGNIVNSVNSSDFTQNKTR---------CYENLCGVEMQCQQG 140 (169)
Q Consensus 74 ry~~~~~kW~k~~LTYrI~nyt~dL~~----~~v~rAf~k~Ws~vt~L~Fte~~~~---------~~~Hgd~~pFDG~gG 140 (169)
++++++.||++++|||+|.+++++++. +.|++||+ .|++|++|+|+|+..+ .++|||++||||++|
T Consensus 2 ~~~~~~~~W~~~~lty~i~~~~~~l~~~~~~~~i~~A~~-~W~~vt~l~F~ev~~~~adI~I~f~~~~~gd~~~fdG~~g 80 (167)
T 3ayu_A 2 NFFPRKPKWDKNQITYRIIGYTPDLDPETVDDAFARAFQ-VWSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDG 80 (167)
T ss_dssp EECTTCCCCSSSEEEEEECCCCTTSCHHHHHHHHHHHHH-HHHTSSSCEEEECSSSCCSEEEEEECSSCSSSCCCCSSSS
T ss_pred ccCCCCCccCCceEEEEEeCCCCCCCHHHHHHHHHHHHH-HHhcCCCeeEEEecCCCceEEEEEeccCCCCcccccCCCc
Confidence 466788999999999999999987763 45778888 7999999999998642 357999999999999
Q ss_pred eeecc-------ccccccccCcceE
Q psy5970 141 KFSLV-------SSLFKFLSQTKLV 158 (169)
Q Consensus 141 ~la~~-------~~~~~~~~~~~~~ 158 (169)
+|||+ .+-.||++++.|.
T Consensus 81 ~la~a~~P~~~~~G~~~fd~~e~w~ 105 (167)
T 3ayu_A 81 LLAHAFAPGTGVGGDSHFDDDELWT 105 (167)
T ss_dssp CCEEEECSSSTTTTCEEEETTSCEE
T ss_pred eeEEEECCCCCcCCceEEcceeeee
Confidence 99998 3567999999886
No 13
>2xs4_A Karilysin protease; hydrolase, bacterial MMP, virulence factor, metalloprotease, dependent, peptidase; 1.70A {Tannerella forsythia} PDB: 2xs3_A
Probab=99.70 E-value=1.3e-17 Score=129.83 Aligned_cols=84 Identities=14% Similarity=0.241 Sum_probs=70.7
Q ss_pred cccCCCccccccceeEEecCCchhhH----HHHHHHhhhhcccccccceEeccc----------ccccCCCCCCcccCCC
Q psy5970 75 FTLDGRKWDHTDLTWRVLSRVDSLIM----KLLLRSVGNIVNSVNSSDFTQNKT----------RCYENLCGVEMQCQQG 140 (169)
Q Consensus 75 y~~~~~kW~k~~LTYrI~nyt~dL~~----~~v~rAf~k~Ws~vt~L~Fte~~~----------~~~~Hgd~~pFDG~gG 140 (169)
|++.+.||.+++|||+|.+++++++. +.|++||+ .|++|++|+|+|+.. ..++|||++||||+||
T Consensus 1 y~l~~~~W~~~~lty~i~~~~~~l~~~~~~~~i~~A~~-~W~~~~~l~F~~v~~~~~adI~I~f~~~~~gd~~~~dG~~g 79 (167)
T 2xs4_A 1 YVLQGSKWNKTTLKYYIYNSSSHLTTTERENAIRSAFA-LWSDKSTLSFIQVYNPNQADIKIKWEKGNHGDGYPFDGNTG 79 (167)
T ss_dssp CCBCSCCCSSSEEEEEECCCCCSSCHHHHHHHHHHHHH-HHHHTSSCEEEECSCGGGCSEEEEEECSCCSSSCCTTSSSC
T ss_pred CCccCCcCCCCeEEEEEeCCCCCCCHHHHHHHHHHHHH-HHhccCCceEEEeCCCCCCcEEEEEeccCCCCCcceecCCC
Confidence 56778999999999999999988764 45677777 799999999999832 2368999999999999
Q ss_pred eeeccc----------cccccccCcceEE
Q psy5970 141 KFSLVS----------SLFKFLSQTKLVY 159 (169)
Q Consensus 141 ~la~~~----------~~~~~~~~~~~~~ 159 (169)
+||||. +-.||++++.|..
T Consensus 80 ~la~a~~P~~~~~~~~g~~~fd~~e~w~~ 108 (167)
T 2xs4_A 80 ILAHAFYPPPAGGNYAGHLHFDDDENWSI 108 (167)
T ss_dssp CSEEECCSTTTTGGGTTEEEEETTSCEES
T ss_pred eEEEEECCCCccCcccceEEECCcccccc
Confidence 999873 5679999999863
No 14
>1hv5_A Stromelysin 3; inhibition, phosphinic inhibitor, hydrolase; HET: CPS RXP; 2.60A {Mus musculus} SCOP: d.92.1.11
Probab=99.69 E-value=1.2e-17 Score=130.02 Aligned_cols=84 Identities=20% Similarity=0.308 Sum_probs=69.9
Q ss_pred cccCCCccccccceeEEecCCchhhH----HHHHHHhhhhcccccccceEecccc---------cccCCCCCCcccCCCe
Q psy5970 75 FTLDGRKWDHTDLTWRVLSRVDSLIM----KLLLRSVGNIVNSVNSSDFTQNKTR---------CYENLCGVEMQCQQGK 141 (169)
Q Consensus 75 y~~~~~kW~k~~LTYrI~nyt~dL~~----~~v~rAf~k~Ws~vt~L~Fte~~~~---------~~~Hgd~~pFDG~gG~ 141 (169)
|++.+.||++++|||+|.+++++++. +.|++||+ .|++|++|+|+|+..+ .++|||++||||+||+
T Consensus 2 y~~~~~~W~~~~ltY~i~~~~~~~~~~~~~~~i~~A~~-~W~~~t~l~F~e~~~~~adI~i~f~~~~~gd~~~fdg~~g~ 80 (165)
T 1hv5_A 2 FVLSGGRWEKTDLTYRILRFPWQLVREQVRQTVAEALQ-VWSEVTPLTFTEVHEGRADIMIDFARYWHGDNLPFDGPGGI 80 (165)
T ss_dssp EEEETTEEEECEEEEEECSCCTTSCHHHHHHHHHHHHH-HHHTTSSCEEEECSSSBCSEEEEEECSCSSSSCCCCSSSSC
T ss_pred ccccCCCCCCCeEEEEEeCCCCCCCHHHHHHHHHHHHH-HHHcccCeeEEEecCCCccEEEEEeecccCCCCcccCCcce
Confidence 45556799999999999999988764 35677887 7999999999998543 3579999999999999
Q ss_pred eecc-------ccccccccCcceEE
Q psy5970 142 FSLV-------SSLFKFLSQTKLVY 159 (169)
Q Consensus 142 la~~-------~~~~~~~~~~~~~~ 159 (169)
|||| .+--||+.++.|..
T Consensus 81 la~A~~P~~~~~g~~~~d~~~~w~~ 105 (165)
T 1hv5_A 81 LAHAFFPKTHREGDVHFDYDETWTI 105 (165)
T ss_dssp CEEEECCTTSSSEEEEEETTSCEES
T ss_pred EEEeeCCCCCcCccEEEccccceec
Confidence 9997 36679999998863
No 15
>1y93_A Macrophage metalloelastase; matrix metalloproteinase, MMP12, complex (elastase inhibitor), acetohydroxamic acid, hydrola; 1.03A {Homo sapiens} SCOP: d.92.1.11 PDB: 1rmz_A 1ycm_A* 1z3j_A* 2hu6_A* 2oxu_A 2oxw_A 2oxz_A 3lik_A* 3lil_A* 3lir_A* 3ljg_A* 1os9_A 1os2_A 3f17_A* 3ehy_A* 3ehx_A* 3f15_A* 3f16_A* 3f18_A* 3f19_A* ...
Probab=99.68 E-value=3.6e-17 Score=127.01 Aligned_cols=79 Identities=11% Similarity=0.111 Sum_probs=67.7
Q ss_pred CCccccccceeEEecCCchhhH----HHHHHHhhhhcccccccceEecccc---------cccCCCCCCcccCCCeeecc
Q psy5970 79 GRKWDHTDLTWRVLSRVDSLIM----KLLLRSVGNIVNSVNSSDFTQNKTR---------CYENLCGVEMQCQQGKFSLV 145 (169)
Q Consensus 79 ~~kW~k~~LTYrI~nyt~dL~~----~~v~rAf~k~Ws~vt~L~Fte~~~~---------~~~Hgd~~pFDG~gG~la~~ 145 (169)
+.||++++|||+|.+++++++. +.|++||+ .|++|++|+|+|+..+ .++|||++||||++|+|||+
T Consensus 2 g~kW~~~~ltY~i~~~~~~l~~~~~~~~i~~A~~-~W~~~t~l~F~e~~~~~adI~I~f~~~~~gd~~~fdG~~g~la~a 80 (159)
T 1y93_A 2 GPVWRKHYITYRINNYTPDMNREDVDYAIRKAFQ-VWSNVTPLKFSKINTGMADILVVFARGAHGDDHAFDGKGGILAHA 80 (159)
T ss_dssp CCCCSSSEEEEEECCCCTTSCHHHHHHHHHHHHH-HHHTTSSCEEEECSSSCCSEEEEEECSCCSSSCCCCSSSSCCEEE
T ss_pred CCcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH-HHhccCCceEEEecCCCccEEEEEEecccCCcccccCCCCeEEEE
Confidence 5799999999999999988764 45678887 7999999999998532 35899999999999999998
Q ss_pred c-------cccccccCcceE
Q psy5970 146 S-------SLFKFLSQTKLV 158 (169)
Q Consensus 146 ~-------~~~~~~~~~~~~ 158 (169)
. +-.||++++.|.
T Consensus 81 ~~P~~~~~g~~~fd~~~~w~ 100 (159)
T 1y93_A 81 FGPGSGIGGDAHFDEDEFWT 100 (159)
T ss_dssp CCSCSTTTTCEEEETTSCEE
T ss_pred ecCCCCcCceEEECCccccc
Confidence 3 568999999986
No 16
>1rm8_A MMP-16, matrix metalloproteinase-16, MT3-MMP; membrane type - matrix metalloproteinase, batimastat, hydroxamate inhibitor, protease, hydrolase; HET: BAT; 1.80A {Homo sapiens} SCOP: d.92.1.11
Probab=99.67 E-value=5.8e-17 Score=126.53 Aligned_cols=80 Identities=16% Similarity=0.199 Sum_probs=67.6
Q ss_pred CCccccccceeEEecCCchhhH----HHHHHHhhhhcccccccceEecc-------cc---------cccCCCCCCcccC
Q psy5970 79 GRKWDHTDLTWRVLSRVDSLIM----KLLLRSVGNIVNSVNSSDFTQNK-------TR---------CYENLCGVEMQCQ 138 (169)
Q Consensus 79 ~~kW~k~~LTYrI~nyt~dL~~----~~v~rAf~k~Ws~vt~L~Fte~~-------~~---------~~~Hgd~~pFDG~ 138 (169)
+.||+|++|||+|.+++++++. +.|++||+ .|++|++|+|+|+. .. .++|||++||||+
T Consensus 1 g~kW~~~~lTY~i~~~~~~~~~~~~~~~i~~A~~-~W~~v~~l~F~ev~~~~~~~~~~~adI~i~f~~~~~gd~~~fdG~ 79 (169)
T 1rm8_A 1 GQKWQHKHITYSIKNVTPKVGDPETRKAIRRAFD-VWQNVTPLTFEEVPYSELENGKRDVDITIIFASGFHGDSSPFDGE 79 (169)
T ss_dssp CCCCSSSEEEEEECCCCTTTCHHHHHHHHHHHHH-HHHTTSSCEEEECCTTCCCSSSCCCSEEEEEESSCCSSSCCCCSS
T ss_pred CCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHH-HHHhcCCceeEEeccccccCCCCCCCEEEEEeeccccccceecCC
Confidence 4699999999999999987743 46778888 79999999999986 11 2479999999999
Q ss_pred CCeeeccc-------cccccccCcceEE
Q psy5970 139 QGKFSLVS-------SLFKFLSQTKLVY 159 (169)
Q Consensus 139 gG~la~~~-------~~~~~~~~~~~~~ 159 (169)
||+||||. +-.||+.++.|+.
T Consensus 80 ~g~la~a~~P~~g~~g~~~fd~~e~w~~ 107 (169)
T 1rm8_A 80 GGFLAHAYFPGPGIGGDTHFDSDEPWTL 107 (169)
T ss_dssp SSCCEEECCSCSTTTTCEEEETTSCEES
T ss_pred CCEEEEEEeecCCccceEEEcCCCccee
Confidence 99999984 4689999999873
No 17
>1i76_A MMP-8;, neutrophil collagenase; hydrolase, complex (metalloprotease/inhibitor); HET: BSI; 1.20A {Homo sapiens} SCOP: d.92.1.11 PDB: 1i73_A* 1jao_A* 1jap_A 1jaq_A* 1jj9_A* 1mmb_A* 1zp5_A* 1zs0_A* 1zvx_A* 3dng_A* 3dpe_A* 3dpf_A* 1kbc_A* 1jan_A* 1bzs_A* 1mnc_A* 2oy2_A 1a86_A* 1jh1_A* 1a85_A ...
Probab=99.67 E-value=5.3e-17 Score=126.43 Aligned_cols=83 Identities=14% Similarity=0.171 Sum_probs=69.9
Q ss_pred cccCCCccccccceeEEecCCchhhH----HHHHHHhhhhcccccccceEecccc---------cccCCCCCCcccCCCe
Q psy5970 75 FTLDGRKWDHTDLTWRVLSRVDSLIM----KLLLRSVGNIVNSVNSSDFTQNKTR---------CYENLCGVEMQCQQGK 141 (169)
Q Consensus 75 y~~~~~kW~k~~LTYrI~nyt~dL~~----~~v~rAf~k~Ws~vt~L~Fte~~~~---------~~~Hgd~~pFDG~gG~ 141 (169)
+++++.||++++|||+|.+++++++. +.|++||+ .|++|++|+|+|+..+ .++|||++||||++|+
T Consensus 2 ~~~~~~~W~~~~ltY~i~~~~~~~~~~~~~~~i~~A~~-~W~~~t~l~F~e~~~~~adI~I~f~~~~~g~~~~fdG~~g~ 80 (163)
T 1i76_A 2 LTPGNPKWERTNLTYRIRNYTPQLSEAEVERAIKDAFE-LWSVASPLIFTRISQGEADINIAFYQRDHGDNSPFDGPNGI 80 (163)
T ss_dssp BCTTCCCCSCSEEEEEECCCCTTSCHHHHHHHHHHHHH-HHHTTSSCEEEECSSSCCSEEEEEECSCCSSSCCCCSSSSC
T ss_pred ccCCCCccCCcEEEEEEeCCCCCCCHHHHHHHHHHHHH-HHhcCCCcceEEecccccceEEEEeecCCCCcccccCCCCe
Confidence 45678999999999999999987764 45678887 7999999999998532 3579999999999999
Q ss_pred eeccc-------cccccccCcceE
Q psy5970 142 FSLVS-------SLFKFLSQTKLV 158 (169)
Q Consensus 142 la~~~-------~~~~~~~~~~~~ 158 (169)
||||. +-.||++++.|.
T Consensus 81 la~a~~p~~~~~g~~~~d~~~~w~ 104 (163)
T 1i76_A 81 LAHAFQPGQGIGGDAHFDAEETWT 104 (163)
T ss_dssp CEEECCSSSTTTTCEEEETTSCCB
T ss_pred EEEEecCCCCccceEEeCCccccc
Confidence 99983 568999998885
No 18
>1hy7_A Stromelysin-1, MMP-3; mixed alpha beta structure, zinc protease, inhibited, hydrol; HET: MBS; 1.50A {Homo sapiens} SCOP: d.92.1.11 PDB: 1biw_A* 1bm6_A* 1bqo_A* 1b3d_A* 1cqr_A 1d5j_A* 1d7x_A* 1d8f_A* 1d8m_A* 1g05_A* 1g49_A* 1c3i_A* 1sln_A* 1uea_A 2srt_A* 1ums_A* 1umt_A* 2d1o_A* 3oho_A* 1ciz_A* ...
Probab=99.65 E-value=1.5e-16 Score=124.72 Aligned_cols=84 Identities=14% Similarity=0.114 Sum_probs=71.2
Q ss_pred ccccCCCccccccceeEEecCCchhhH----HHHHHHhhhhcccccccceEecccc---------cccCCCCCCcccCCC
Q psy5970 74 RFTLDGRKWDHTDLTWRVLSRVDSLIM----KLLLRSVGNIVNSVNSSDFTQNKTR---------CYENLCGVEMQCQQG 140 (169)
Q Consensus 74 ry~~~~~kW~k~~LTYrI~nyt~dL~~----~~v~rAf~k~Ws~vt~L~Fte~~~~---------~~~Hgd~~pFDG~gG 140 (169)
.+++++.||+|++|||+|.+++++++. +.|++||+ .|++|++|+|+|+..+ .++|||+++|||++|
T Consensus 2 ~~~~~~~~W~~~~ltY~i~~~~~~~~~~~~~~~i~~A~~-~W~~~t~l~F~~~~~~~adI~I~f~~~~~g~~~~~~G~~g 80 (173)
T 1hy7_A 2 RTFPGIPKWRKTHLTYRIVNYTPDLPKDAVDSAVEKALK-VWEEVTPLTFSRLYEGEADIMISFAVREHGDFYPFDGPGN 80 (173)
T ss_dssp CBCTTCCCCSSSEEEEEECCBCTTSCHHHHHHHHHHHHH-HHHTTSSCEEEECSSSCCSEEEEEECSSCSSSCCCCSSSS
T ss_pred ccCCCCCccCCceEEEEEeCCCCCCCHHHHHHHHHHHHH-HHHhCCCcceEEecccCCCeeEEEecccccccceeeCCCc
Confidence 456778999999999999999888764 45778888 7999999999997532 357999999999999
Q ss_pred eeeccc-------cccccccCcceE
Q psy5970 141 KFSLVS-------SLFKFLSQTKLV 158 (169)
Q Consensus 141 ~la~~~-------~~~~~~~~~~~~ 158 (169)
+|||+. +-.||++++.|.
T Consensus 81 ~la~a~~p~~~~~g~~~~d~~~~w~ 105 (173)
T 1hy7_A 81 VLAHAYAPGPGINGDAHFDDDEQWT 105 (173)
T ss_dssp CCEEECCSSSTTTTCEEEETTSCEE
T ss_pred eeEEEecCCCCccceEEeccccccc
Confidence 999983 678999999886
No 19
>1cge_A Fibroblast collagenase; hydrolase (metalloprotease); 1.90A {Homo sapiens} SCOP: d.92.1.11 PDB: 2j0t_A 1ayk_A 1hfc_A* 2ayk_A 2tcl_A* 3ayk_A* 4ayk_A* 1cgl_A* 1cgf_A 966c_A* 3shi_A
Probab=99.64 E-value=1.7e-16 Score=124.02 Aligned_cols=82 Identities=13% Similarity=0.189 Sum_probs=69.5
Q ss_pred ccCCCccccccceeEEecCCchhhH----HHHHHHhhhhcccccccceEecccc---------cccCCCCCCcccCCCee
Q psy5970 76 TLDGRKWDHTDLTWRVLSRVDSLIM----KLLLRSVGNIVNSVNSSDFTQNKTR---------CYENLCGVEMQCQQGKF 142 (169)
Q Consensus 76 ~~~~~kW~k~~LTYrI~nyt~dL~~----~~v~rAf~k~Ws~vt~L~Fte~~~~---------~~~Hgd~~pFDG~gG~l 142 (169)
++++.||.|++|||+|.+++++++. +.|++||+ .|++|++|+|+|+..+ .++|||+++|||++|+|
T Consensus 2 ~~~~~~W~~~~itY~i~~~~~~~~~~~~~~~i~~A~~-~W~~~t~l~F~~~~~~~adI~I~f~~~~~g~~~~~~G~~g~l 80 (168)
T 1cge_A 2 TEGNPRWEQTHLRYRIENYTPDLPRADVDHAIEKAFQ-LWSNVTPLTFTKVSEGQADIMISFVRGDHRDNSPFDGPGGNL 80 (168)
T ss_dssp CCCCCCCSSSEEEEEECSCCTTSCHHHHHHHHHHHHH-HHHTTSSCEEEECSSSCCSEEEEEECSCCSSSSCCCSSSSCC
T ss_pred CCCCCccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHH-HHhhccCceeEEecCCCCcEEEEEeeccccccccccccCCeE
Confidence 4677899999999999999988763 45778888 7999999999998532 35799999999999999
Q ss_pred eccc-------cccccccCcceE
Q psy5970 143 SLVS-------SLFKFLSQTKLV 158 (169)
Q Consensus 143 a~~~-------~~~~~~~~~~~~ 158 (169)
|||. +-.||++++.|.
T Consensus 81 a~a~~P~~~~~g~~~~d~~~~w~ 103 (168)
T 1cge_A 81 AHAFQPGPGIGGDAHFDEDERWT 103 (168)
T ss_dssp EEECCSSSTTTTCEEEETTSCCB
T ss_pred EEeECCCCCccceEEEccccccc
Confidence 9983 568999998886
No 20
>1sat_A Serratia protease; parallel beta helix, parallel beta roll, hydrolase (serine protease); 1.75A {Serratia marcescens} SCOP: b.80.7.1 d.92.1.6 PDB: 1af0_A* 1smp_A 1srp_A
Probab=99.62 E-value=4.4e-17 Score=145.76 Aligned_cols=102 Identities=16% Similarity=0.074 Sum_probs=76.5
Q ss_pred HhcCCCccccCCHHHHHhhcCCCCCCCCCCCcccccccccccCCCccc-------cccceeEEecCCchh----------
Q psy5970 36 RFGNIPVTGIVDDATLALMKKPRCGLPDTPPLDRRRTKRFTLDGRKWD-------HTDLTWRVLSRVDSL---------- 98 (169)
Q Consensus 36 ~f~gL~~TG~LD~~T~~~M~~PRCGvpD~~~~~~~r~~ry~~~~~kW~-------k~~LTYrI~nyt~dL---------- 98 (169)
|+++|++ |.+|||||||+. ..+.+.+.||+ +++|||+|.++++++
T Consensus 18 r~~~l~v-----------~~kPrcgvpd~~-------~~l~~~~~kW~~~~~~~~~~~LTY~f~~~~~~~~~~~~~~~~~ 79 (471)
T 1sat_A 18 RGNGIQI-----------NGKDSFSNEQAG-------LFITRENQTWNGYKVFGQPVKLTFSFPDYKFSSTNVAGDTGLS 79 (471)
T ss_dssp CCTTCEE-----------TTEECCCHHHHH-------HHHTTTCCCTTCTTCCSCCEEEEEECCCCCTTCCCTTSCBSCB
T ss_pred ccCCccc-----------cCCcCCCCcchh-------HhhccCCCcccCccccCCCceEEEEeecCCCcccccccccccc
Confidence 7777765 678999999974 23666778998 999999999988643
Q ss_pred -----hHHHHHHHhhhhcccccccceEecccc--------cccCC-CCCCcccCCCeeecc----ccccc-cccCcceEE
Q psy5970 99 -----IMKLLLRSVGNIVNSVNSSDFTQNKTR--------CYENL-CGVEMQCQQGKFSLV----SSLFK-FLSQTKLVY 159 (169)
Q Consensus 99 -----~~~~v~rAf~k~Ws~vt~L~Fte~~~~--------~~~Hg-d~~pFDG~gG~la~~----~~~~~-~~~~~~~~~ 159 (169)
.++.|++||+ +|++|++|+|+|+... .++++ |+ .| +||+|||| .+.++ |++++.|+-
T Consensus 80 ~ls~~~~~~i~~Af~-~Ws~vt~L~F~ev~~~~~adI~f~~~~~~~~g-~~--~gg~lahA~~P~~g~~~~~~~~e~w~~ 155 (471)
T 1sat_A 80 KFSAEQQQQAKLSLQ-SWADVANITFTEVAAGQKANITFGNYSQDRPG-HY--DYGTQAYAFLPNTIWQGQDLGGQTWYN 155 (471)
T ss_dssp CCCHHHHHHHHHHHH-HHHHHBSEEEEECCTTSCCSEEEEEECEEETT-EE--CCSCCEEECCTTCEETTEECTTEEEEE
T ss_pred cCCHHHHHHHHHHHH-HhhccCCeeEEEcCCCCceEEEEEEecCCCCC-cc--cccceeeEecCCCCcccccccceeeec
Confidence 2456889998 8999999999998643 12222 22 23 38999998 45566 889999974
No 21
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A
Probab=99.60 E-value=8.3e-16 Score=133.38 Aligned_cols=80 Identities=11% Similarity=0.101 Sum_probs=68.4
Q ss_pred CCccccccceeEEecCCchhhH----HHHHHHhhhhcccccccceEecccc---------cccCCCCCCcccCCCeeecc
Q psy5970 79 GRKWDHTDLTWRVLSRVDSLIM----KLLLRSVGNIVNSVNSSDFTQNKTR---------CYENLCGVEMQCQQGKFSLV 145 (169)
Q Consensus 79 ~~kW~k~~LTYrI~nyt~dL~~----~~v~rAf~k~Ws~vt~L~Fte~~~~---------~~~Hgd~~pFDG~gG~la~~ 145 (169)
++||.+++|||+|.+++++++. +.|++||+ .|++|++|+|+|+..+ .++|||++||||+||+||||
T Consensus 1 g~kW~~~~lty~i~~~~~~~~~~~~~~~i~~A~~-~W~~vt~l~F~ev~~~~adI~I~f~~~~hgd~~~fdG~~g~laha 79 (365)
T 3ba0_A 1 GPVWRKHYITYRINNYTPDMNREDVDYAIRKAFQ-VWSNVTPLKFSKINTGMADILVVFARGAHGDDHAFDGKGGILAHA 79 (365)
T ss_dssp CCCCSCSCEEEEECCCCTTCCSHHHHHHHHHHHH-HHHTTSSCCEEECSSSCCSEEEEEECSSCSSSSCCCSSSSCCEEE
T ss_pred CCCCcCcEEEEEEeCCCCCCCHHHHHHHHHHHHH-HHhcccCeeEEEecCCCCCEEEEEeccCCCCcccccCCCCeEEEe
Confidence 4699999999999999988763 45778887 7999999999998543 35899999999999999998
Q ss_pred c-------cccccccCcceEE
Q psy5970 146 S-------SLFKFLSQTKLVY 159 (169)
Q Consensus 146 ~-------~~~~~~~~~~~~~ 159 (169)
. +-.||++++.|..
T Consensus 80 ~~P~~~~~g~~hfd~~e~w~~ 100 (365)
T 3ba0_A 80 FGPGSGIGGDAHFDEDEFWTT 100 (365)
T ss_dssp CCSCSSSSSCEEEETTSCEES
T ss_pred ecCCCCccceEEeCCCCCccc
Confidence 3 5689999999973
No 22
>1g9k_A Serralysin; beta jelly roll, hydrolase; 1.96A {Pseudomonas} SCOP: b.80.7.1 d.92.1.6 PDB: 1o0q_A 1o0t_A 1om6_A 1om7_A 1om8_A 1omj_A 1h71_P
Probab=99.57 E-value=1.6e-16 Score=141.93 Aligned_cols=103 Identities=15% Similarity=0.144 Sum_probs=77.9
Q ss_pred HhcCCCccccCCHHHHHhhcCCCCCCCCCCCcccccccccccCCCccc------cccceeEEecCCchh-----------
Q psy5970 36 RFGNIPVTGIVDDATLALMKKPRCGLPDTPPLDRRRTKRFTLDGRKWD------HTDLTWRVLSRVDSL----------- 98 (169)
Q Consensus 36 ~f~gL~~TG~LD~~T~~~M~~PRCGvpD~~~~~~~r~~ry~~~~~kW~------k~~LTYrI~nyt~dL----------- 98 (169)
||+|| +|.+||||+||+. .++.+.+.||. +++|||+|.++++++
T Consensus 20 r~~gl------------v~~kPrcgv~d~~-------~~l~~~~~kW~~~~~~~~~~LTY~f~~~~~~~~~p~~~~~~~~ 80 (463)
T 1g9k_A 20 RGDHL------------VNGKPSFTVDQVA-------DQLTRSGASWHDLNNDGVINLTYTFLTAPPVGYASRGLGTFSQ 80 (463)
T ss_dssp CSSSE------------ETTEECCCHHHHH-------HHHTTTCCCCCCTTCSSSEEEEEEECSSCCTTGGGGCCCSEEC
T ss_pred ccCCe------------ecCCCcCCCChhH-------HhccCCCCCCCCCcCCCCcEEEEEEecCCcccccccccccccc
Confidence 89998 4789999999974 36777788998 689999999997654
Q ss_pred -h---HHHHHHHhhhhcccccccceEecccccccCCC--CCCcccCCCeeeccc-------cccccccCcceE
Q psy5970 99 -I---MKLLLRSVGNIVNSVNSSDFTQNKTRCYENLC--GVEMQCQQGKFSLVS-------SLFKFLSQTKLV 158 (169)
Q Consensus 99 -~---~~~v~rAf~k~Ws~vt~L~Fte~~~~~~~Hgd--~~pFDG~gG~la~~~-------~~~~~~~~~~~~ 158 (169)
+ ++.+++||+ .|++|++|+|+|+.+......| -..|||++|+||||. +--||+.++.|+
T Consensus 81 l~~~~~~~i~~A~~-~Ws~vt~L~F~e~~v~~~~~AdI~i~~fdg~~g~lA~A~~P~~~~~G~~~fd~~~~w~ 152 (463)
T 1g9k_A 81 FSALQKEQAKLSLE-SWADVAKVTFTEGPAARGDDGHMTFANFSASNGGAAFAYLPNSSRKGESWYLINKDYQ 152 (463)
T ss_dssp CCHHHHHHHHHHHH-HHHTTBSEEEEESCCCC-CCEEEEEEEECCGGGCSEEECCTTSTTTTEEEEECBTTBC
T ss_pred CCHHHHHHHHHHHH-HHhcccCceEEEcccCCCCCccEEEEeecCCCcceeeeecCCCCcCCceeeccccccc
Confidence 2 356889998 8999999999992222211111 114899999999983 346788888875
No 23
>2jsd_A Matrix metalloproteinase-20; MMP-NNGH, structural genomics, structural proteomics in europe, spine, spine-2, spine2-complexes, hydrolase; HET: NGH; NMR {Homo sapiens}
Probab=99.56 E-value=3.7e-15 Score=114.85 Aligned_cols=80 Identities=15% Similarity=0.148 Sum_probs=67.1
Q ss_pred CCCccccccceeEEecCCchhhH----HHHHHHhhhhcccccccceEecccc---------cccCCCCCCcccCCCeeec
Q psy5970 78 DGRKWDHTDLTWRVLSRVDSLIM----KLLLRSVGNIVNSVNSSDFTQNKTR---------CYENLCGVEMQCQQGKFSL 144 (169)
Q Consensus 78 ~~~kW~k~~LTYrI~nyt~dL~~----~~v~rAf~k~Ws~vt~L~Fte~~~~---------~~~Hgd~~pFDG~gG~la~ 144 (169)
++.||++++|||+|.+++++++. +.|++||+ .|+++++|+|+|+..+ .++|||+++|||++|.+||
T Consensus 1 ~~~~W~~~~itY~i~~~~~~~~~~~~~~~i~~A~~-~W~~~t~l~F~~~~~~~adi~i~f~~~~~g~~~~~~G~~g~~a~ 79 (160)
T 2jsd_A 1 GEPKWKKNTLTYRISKYTPSMSSVEVDKAVEMALQ-AWSSAVPLSFVRINSGEADIMISFENGDHGDSYPFDGPRGTLAH 79 (160)
T ss_dssp CCSSCSCSEEEEEECCCCSSSCHHHHHHHHHHHHH-HHHHHSSCEEEECSSSCCSEEEEEECSCSSSSSCCCSSSSCSEE
T ss_pred CCCcccCCeEEEEEeCCCCCCCHHHHHHHHHHHHH-HHHccCCeeEEEecCCCCCEEEEEeeccCCCCccccCCCCeeEE
Confidence 35799999999999999887753 45778888 7999999999997532 2479999999999999998
Q ss_pred cc-------cccccccCcceE
Q psy5970 145 VS-------SLFKFLSQTKLV 158 (169)
Q Consensus 145 ~~-------~~~~~~~~~~~~ 158 (169)
+. +-.||++++.|.
T Consensus 80 a~~p~~~~~g~~~~d~~~~~~ 100 (160)
T 2jsd_A 80 AFAPGEGLGGDTHFDNAEKWT 100 (160)
T ss_dssp ECCSSSSSTTCEEEETTSCEE
T ss_pred EecCCCCcCccEEeccccccc
Confidence 73 568999999886
No 24
>3edh_A Bone morphogenetic protein 1; vicinal disulfide, alternative splicing, calcium, chondrogenesis, cleavage on PAIR of basic residues, cytokine; 1.25A {Homo sapiens} SCOP: d.92.1.0 PDB: 3edg_A 3edi_A
Probab=97.82 E-value=1.8e-05 Score=63.38 Aligned_cols=58 Identities=9% Similarity=0.118 Sum_probs=45.7
Q ss_pred CCccccccceeEEe-cCCchhhHHHHHHHhhhhcccccccceEecccc-------cccCCCCCCcccCC
Q psy5970 79 GRKWDHTDLTWRVL-SRVDSLIMKLLLRSVGNIVNSVNSSDFTQNKTR-------CYENLCGVEMQCQQ 139 (169)
Q Consensus 79 ~~kW~k~~LTYrI~-nyt~dL~~~~v~rAf~k~Ws~vt~L~Fte~~~~-------~~~Hgd~~pFDG~g 139 (169)
+.+|++..|+|+|. +|+++ .++.|++||. .|+++|.|+|++.... .++||| +++-|..
T Consensus 7 ~~~Wp~~~VpY~I~~~~s~~-~~~~I~~A~~-~w~~~TCIrFv~~t~e~dyI~f~~~~~GC-~S~vG~~ 72 (201)
T 3edh_A 7 ERVWPDGVIPFVIGGNFTGS-QRAVFRQAMR-HWEKHTCVTFLERTDEDSYIVFTYRPCGC-CSYVGRR 72 (201)
T ss_dssp GGSCGGGEEEEEECSSCCHH-HHHHHHHHHH-HHHHHSSCEEEECSSCSSEEEEEECCSCS-CCCSSCC
T ss_pred CCcCCCcEEEEEECCCCCHH-HHHHHHHHHH-HHHhhccceEEEcCCCCcEEEEEcCCCCC-ccccCCc
Confidence 46899999999998 67765 4678999999 7999999999987532 245677 5677764
No 25
>3lq0_A Proastacin; metallopeptidase, zymogen activation, proenzyme, protease, D bond, hydrolase, metal-binding, metalloprotease, zymogen; 1.45A {Astacus astacus} PDB: 1iab_A 1iaa_A 1ast_A 1iac_A 1iad_A 1iae_A 1qji_A* 1qjj_A
Probab=97.56 E-value=4.1e-05 Score=62.75 Aligned_cols=43 Identities=7% Similarity=0.117 Sum_probs=37.6
Q ss_pred CCccccccceeEEecCCchhhHHHHHHHhhhhcccccccceEecc
Q psy5970 79 GRKWDHTDLTWRVLSRVDSLIMKLLLRSVGNIVNSVNSSDFTQNK 123 (169)
Q Consensus 79 ~~kW~k~~LTYrI~nyt~dL~~~~v~rAf~k~Ws~vt~L~Fte~~ 123 (169)
..+|++..|+|+|.+|+++ .++.|++||. .|+++|.|+|++..
T Consensus 41 ~~~Wp~~~VpY~I~~~t~~-~~~~I~~Am~-~w~~~TCIrFvprt 83 (235)
T 3lq0_A 41 EYLWSGGVIPYTFAGVSGA-DQSAILSGMQ-ELEEKTCIRFVPRT 83 (235)
T ss_dssp GGSCGGGEEEEEEESCCHH-HHHHHHHHHH-HHHHHSSCEEEECS
T ss_pred CCcCCCCEEEEEEcCCCHH-HHHHHHHHHH-HHHhcccceEEEcC
Confidence 4799999999999998765 3678999999 79999999999864
No 26
>1c7k_A NCNP, zinc endoprotease; alpha and beta protein, metalloproteinase, hydrolase; 1.00A {Streptomyces caespitosus} SCOP: d.92.1.1 PDB: 1kuh_A
Probab=97.38 E-value=0.00011 Score=55.56 Aligned_cols=53 Identities=11% Similarity=0.142 Sum_probs=35.3
Q ss_pred cceeEEecCCchhhHHHHHHHhhhhc-ccccccceEeccccc--ccCCCCCCcccCCCeeeccc
Q psy5970 86 DLTWRVLSRVDSLIMKLLLRSVGNIV-NSVNSSDFTQNKTRC--YENLCGVEMQCQQGKFSLVS 146 (169)
Q Consensus 86 ~LTYrI~nyt~dL~~~~v~rAf~k~W-s~vt~L~Fte~~~~~--~~Hgd~~pFDG~gG~la~~~ 146 (169)
+|+|-...-. .-++.|++||+ +| |+|+||+|+|+.... .-+++ | +||.+||+-
T Consensus 3 ~~~y~~s~~~--~v~~ai~~Afq-~W~s~Vt~l~F~ev~~ADI~I~~~~----D-~gg~~A~~~ 58 (132)
T 1c7k_A 3 TVTYDPSNAP--SFQQEIANAAQ-IWNSSVRNVQLRAGGNADFSYYEGN----D-SRGSYAQTD 58 (132)
T ss_dssp EEEEEEEECG--GGHHHHHHHHH-HHHHHCSSEEEEECSSCSEEEEEEC----C-TTCCEEEEC
T ss_pred EEEEeCCChH--HHHHHHHHHHH-HHHhcCCceEEEEcCCceEEEEeCC----C-CCCceecCC
Confidence 5667664322 34678999999 67 699999999982111 11332 4 789999873
No 27
>3lqb_A Hatching enzyme, LOC792177 protein; hydrolase, metalloprotease, astacin, metal- protease; 1.10A {Danio rerio}
Probab=96.23 E-value=0.0032 Score=50.16 Aligned_cols=44 Identities=9% Similarity=0.200 Sum_probs=36.2
Q ss_pred CCCccccc-----cceeEEe-cCCchhhHHHHHHHhhhhcccccccceEecc
Q psy5970 78 DGRKWDHT-----DLTWRVL-SRVDSLIMKLLLRSVGNIVNSVNSSDFTQNK 123 (169)
Q Consensus 78 ~~~kW~k~-----~LTYrI~-nyt~dL~~~~v~rAf~k~Ws~vt~L~Fte~~ 123 (169)
++.+|+|. .|+|.|. +|++. .++.|++||. .|+++|.++|++..
T Consensus 8 ~~~~W~k~~~G~v~VPY~i~~~~~~~-~~~~I~~A~~-~w~~~TCIrFv~r~ 57 (199)
T 3lqb_A 8 KSCFWKKNANNIVEVPYVVSGEFSIN-DKSVIANAIS-IFHAQTCIRFVPRS 57 (199)
T ss_dssp STTSCCBCTTSCEEEEEEECTTSCHH-HHHHHHHHHH-HHHHHSSEEEEECS
T ss_pred CCCCCCCCCCCCEEEEEEECCCCCHH-HHHHHHHHHH-HHHhccCceEEEcC
Confidence 35799986 7999998 46654 4678999999 79999999999875
No 28
>1lbu_A Muramoyl-pentapeptide carboxypeptidase; hydrolase, nuclear receptor; 1.80A {Streptomyces albus} SCOP: a.20.1.1 d.65.1.1
Probab=94.00 E-value=0.046 Score=43.07 Aligned_cols=54 Identities=20% Similarity=0.114 Sum_probs=36.5
Q ss_pred HHHHHHHHhcCCCCCCCCchhhcc--CCHHHHHHh-HhcCCCccccCCHHHHHhhcCC
Q psy5970 3 TILQSYLANFGYLEASSNSEIANL--RTKEQVTEA-RFGNIPVTGIVDDATLALMKKP 57 (169)
Q Consensus 3 ~~~k~YL~kfGYL~~~~~~~~~~l--~~~~~l~~a-~f~gL~~TG~LD~~T~~~M~~P 57 (169)
..+|..|..+||... .....+.. .+.+.++.. +.+||+++|+++.+|++.|...
T Consensus 20 ~~lQ~~L~~~~~~~~-~~~~dG~fg~~t~~AV~~FQ~~~gL~~dG~vg~~T~~~L~~~ 76 (213)
T 1lbu_A 20 RQLQIRVAGYPGTGA-QLAIDGQFGPATKAAVQRFQSAYGLAADGIAGPATFNKIYQL 76 (213)
T ss_dssp HHHHHHTTTCSCTTC-CCCCSSBCCHHHHHHHHHHHHHTTSCCSSCBCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcCC-CCCCCCCcCHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHH
Confidence 357889999998642 11111211 123345555 8899999999999999998753
No 29
>3bkh_A Phikz144, lytic transglycosylase; bacteriophage, endolysin, peptidoglycan, cell WALL degradation, lysozyme, hydrolase; 2.50A {Pseudomonas phage phikz} PDB: 3bkv_A*
Probab=91.90 E-value=0.15 Score=41.90 Aligned_cols=51 Identities=25% Similarity=0.235 Sum_probs=36.5
Q ss_pred HHHHHHHHhcCCCCCCCCchhhcc--CCHHHHHHh-HhcCCCccccCCHHHHHhhcC
Q psy5970 3 TILQSYLANFGYLEASSNSEIANL--RTKEQVTEA-RFGNIPVTGIVDDATLALMKK 56 (169)
Q Consensus 3 ~~~k~YL~kfGYL~~~~~~~~~~l--~~~~~l~~a-~f~gL~~TG~LD~~T~~~M~~ 56 (169)
..+|..|...||.....+ +.. .+...++.. +..||+++|++|.+|...|..
T Consensus 22 ~~lQ~~L~~~Gy~~g~~D---G~fg~~T~~AV~~FQ~~~gL~~dGivg~~T~~~L~~ 75 (268)
T 3bkh_A 22 CQLQTLLNLCGYDVGKPD---GIFGNNTFNQVVKFQKDNCLDSDGIVGKNTWAELFS 75 (268)
T ss_dssp HHHHHHHHTTTCCCCSCC---SBCCHHHHHHHHHHHHHTTSCCSSCBCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCC---CccCHHHHHHHHHHHHHhCCCCCCcCCHHHHHHHHH
Confidence 468899999999863111 211 123445555 889999999999999988864
No 30
>4fet_B Spore cortex-lytic enzyme prepeptide; transglycosylase, cortex hydrolase domain, sodium ION, seMet hydrolase; 1.91A {Bacillus anthracis}
Probab=88.85 E-value=0.079 Score=42.81 Aligned_cols=53 Identities=21% Similarity=0.191 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCCCCCCchhhccCCHHHHHHh-HhcCCCccccCCHHHHHhhcC
Q psy5970 3 TILQSYLANFGYLEASSNSEIANLRTKEQVTEA-RFGNIPVTGIVDDATLALMKK 56 (169)
Q Consensus 3 ~~~k~YL~kfGYL~~~~~~~~~~l~~~~~l~~a-~f~gL~~TG~LD~~T~~~M~~ 56 (169)
..+|..|...||.....+-.-+. .+...++.. +..||+++|.+|.+|+..|..
T Consensus 17 ~~lQ~~L~~lGy~~g~~DG~fG~-~T~~AV~~FQ~~~GL~~DGivg~~T~~aL~~ 70 (222)
T 4fet_B 17 IELQSRLKYNGFYTGKVDGVFGW-GTYWALRNFQEKFGLPVDGLAGAKTKQMLVK 70 (222)
T ss_dssp -------------------------------------------------------
T ss_pred HHHHHHHHHcCCCCCCCCCCcCH-HHHHHHHHHHHHcCCCCCCCcCHHHHHHHHh
Confidence 35788999999975311111111 233445555 889999999999999988864
No 31
>3d2y_A N-acetylmuramoyl-L-alanine amidase AMID; zinc amidase, PGRP, peptidoglycan recognizing protein, AMPD, acetylmuramyl-L-alanine amidase; HET: AH0; 1.75A {Escherichia coli} PDB: 2bh7_A 2wkx_A 2bgx_A* 3d2z_A
Probab=88.19 E-value=0.63 Score=38.07 Aligned_cols=50 Identities=20% Similarity=0.284 Sum_probs=33.1
Q ss_pred HHHHHHHHhcCCCCCCCCchhhccCCHHHHHHh--HhcCCCccccCCHHHHHhhc
Q psy5970 3 TILQSYLANFGYLEASSNSEIANLRTKEQVTEA--RFGNIPVTGIVDDATLALMK 55 (169)
Q Consensus 3 ~~~k~YL~kfGYL~~~~~~~~~~l~~~~~l~~a--~f~gL~~TG~LD~~T~~~M~ 55 (169)
..+|.-|+.+||-.. .+.. +. .+...++.. +|-+|.++|.+|.+|.+.+.
T Consensus 201 ~~lq~~L~~~GY~~~-dg~~-~~-~t~~aV~aFQ~~~r~l~~dGi~d~~T~~~L~ 252 (261)
T 3d2y_A 201 ASLLELLARYGYDVK-PDMT-PR-EQRRVIMAFQMHFRPTLYNGEADAETQAIAE 252 (261)
T ss_dssp HHHHHHHHHHTCCCC-SSCC-HH-HHHHHHHHHHHHHCTTCCSCCCBHHHHHHHH
T ss_pred HHHHHHHHHcCCCCC-CCcc-CH-HHHHHHHHHHHHcCCCCCCCCCCHHHHHHHH
Confidence 457888999999653 2211 10 112334444 55599999999999998774
No 32
>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A*
Probab=40.71 E-value=24 Score=32.12 Aligned_cols=42 Identities=12% Similarity=0.241 Sum_probs=32.3
Q ss_pred CccccccceeEEecCCchhhHHHHHHHhhhhcccccccceEecc
Q psy5970 80 RKWDHTDLTWRVLSRVDSLIMKLLLRSVGNIVNSVNSSDFTQNK 123 (169)
Q Consensus 80 ~kW~k~~LTYrI~nyt~dL~~~~v~rAf~k~Ws~vt~L~Fte~~ 123 (169)
.||++ .+=|.|.+.-+...+..|++||. .|++.|=++|.+..
T Consensus 47 ~rWp~-~IPY~i~~~~~~~~~~~I~~Am~-~~~~~TCIrF~pr~ 88 (592)
T 4gwm_A 47 YRWPH-TIPYVLEDSLEMNAKGVILNAFE-RYRLKTCIDFKPWA 88 (592)
T ss_dssp GCCCS-EEEEEECTTSCHHHHHHHHHHHH-HHHHHSSCEEEECS
T ss_pred ccCCc-eEEEEECCCCCHHHHHHHHHHHH-HHHhCCceeeEECC
Confidence 48985 78999975333345677999999 68999999998753
No 33
>3f14_A Uncharacterized NTF2-like protein; YP_680363.1, NTF2-like protein of unknown function, structur genomics; HET: MSE TRS PGE; 1.45A {Cytophaga hutchinsonii atcc 33406}
Probab=22.37 E-value=46 Score=22.24 Aligned_cols=71 Identities=7% Similarity=0.125 Sum_probs=39.3
Q ss_pred cceeEEecCCchhhHHHHHHHhhhhcccccccceEecccccccCCCCCC----ccc---CCCeee-ccccccccccCcce
Q psy5970 86 DLTWRVLSRVDSLIMKLLLRSVGNIVNSVNSSDFTQNKTRCYENLCGVE----MQC---QQGKFS-LVSSLFKFLSQTKL 157 (169)
Q Consensus 86 ~LTYrI~nyt~dL~~~~v~rAf~k~Ws~vt~L~Fte~~~~~~~Hgd~~p----FDG---~gG~la-~~~~~~~~~~~~~~ 157 (169)
++.|.+....+-..++.+++.+..+++...+++|+-.. -..+||-.- +.| .|+.+. ....+|.|+|+.+.
T Consensus 28 Dv~w~~~g~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~--~i~~Gd~Vvv~~~~~~~~~~g~~~~~~~~~vf~~~dGkI~ 105 (112)
T 3f14_A 28 IIEWNIIGNQVVKGKADVIDFCNKMLPEMKGAVLTNDN--VIQNENQIVIEGKCRYFDAEGKEAFVSYCDIYRFENDTIK 105 (112)
T ss_dssp EEEEEETTTEEEESHHHHHHHHHHHHHHHHTSEEEEEE--EEECSSEEEEEEEEEEECTTSCEEEEEEEEEEEEETTEEE
T ss_pred ceEEEEcCCccEecHHHHHHHHHHHHhhcCCcEEEEEE--EEEeCCEEEEEEEEEEEeCCCCEEEEEEEEEEEEeCCEEE
Confidence 45565544333334677777777666655556665332 223444332 222 344554 34789999988654
Q ss_pred E
Q psy5970 158 V 158 (169)
Q Consensus 158 ~ 158 (169)
-
T Consensus 106 e 106 (112)
T 3f14_A 106 T 106 (112)
T ss_dssp E
T ss_pred E
Confidence 3
No 34
>2nn4_A Hypothetical protein YQGQ; novel fold, PFAM:DUF910, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.272.1.1
Probab=20.68 E-value=59 Score=21.57 Aligned_cols=40 Identities=10% Similarity=0.204 Sum_probs=23.2
Q ss_pred HHHHHHhcCCCCCCCCchhhccCCHHHHHHh--HhcCCCccccCCHHHH
Q psy5970 5 LQSYLANFGYLEASSNSEIANLRTKEQVTEA--RFGNIPVTGIVDDATL 51 (169)
Q Consensus 5 ~k~YL~kfGYL~~~~~~~~~~l~~~~~l~~a--~f~gL~~TG~LD~~T~ 51 (169)
+|+.|++||.+.- -+.+.. .++-+ +.-.|-..|.+|.++-
T Consensus 8 VqQLLK~fG~~IY-~GdR~~------DielM~~El~~Ly~~~lId~~~y 49 (72)
T 2nn4_A 8 VQQLLKTFGHIVY-FGDREL------EIEFMLDELKELYMNHMIEKEQW 49 (72)
T ss_dssp HHHHHHTTTCCCC-CSCHHH------HHHHHHHHHHHHHHTTSSCHHHH
T ss_pred HHHHHHHCCEEEE-eCChHH------HHHHHHHHHHHHHHcCCCCHHHH
Confidence 7899999999987 443322 12221 3334445566666553
Done!