RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5970
(169 letters)
>d1su3a1 a.20.1.2 (A:32-98) Fibroblast collagenase (MMP-1) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 67
Score = 71.3 bits (175), Expect = 7e-18
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 4 ILQSYLANFGYLEASSNSEIANLRTKEQVTEA-----RFGNIPVTGIVDDATLALMKKPR 58
++Q YL + L+ + ++ R V E F + VTG D TL +MK+PR
Sbjct: 2 LVQKYLEKYYNLK-NDGRQVEKRRNSGPVVEKLKQMQEFFGLKVTGKPDAETLKVMKQPR 60
Query: 59 CGLPD 63
CG+PD
Sbjct: 61 CGVPD 65
>d1slma1 a.20.1.2 (A:16-80) Stromelysin-1 (MMP-3) {Human (Homo
sapiens), fibroblast [TaxId: 9606]}
Length = 65
Score = 69.0 bits (169), Expect = 6e-17
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 4 ILQSYLANFGYLEASSNSEIANLRTKEQVTEA-----RFGNIPVTGIVDDATLALMKKPR 58
++Q YL N+ L+ + + V + +F + VTG +D TL +M+KPR
Sbjct: 1 LVQKYLENYYDLK-KDVKQFVRRKDSGPVVKKIREMQKFLGLEVTGKLDSDTLEVMRKPR 59
Query: 59 CGLPD 63
CG+PD
Sbjct: 60 CGVPD 64
>d1l6ja1 a.20.1.2 (A:29-105) Gelatinase B (MMP-9) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 77
Score = 64.5 bits (157), Expect = 4e-15
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 10/67 (14%)
Query: 2 KTILQSYLANFGYLEASSNSEIANLRTKEQVTEA-----RFGNIPVTGIVDDATLALMKK 56
+ + + YL +GY + + + A + ++P TG +D ATL M+
Sbjct: 14 RQLAEEYLYRYGYTRVAEMR-----GESKSLGPALLLLQKQLSLPETGELDSATLKAMRT 68
Query: 57 PRCGLPD 63
PRCG+PD
Sbjct: 69 PRCGVPD 75
>d1eaka1 a.20.1.2 (A:32-107) Gelatinase A (MMP-2) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 76
Score = 59.8 bits (145), Expect = 2e-13
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 12/65 (18%)
Query: 4 ILQSYLANFGYLEASSNSEIANLRTKEQVTEA-----RFGNIPVTGIVDDATLALMKKPR 58
+ YL F S + + +F +P TG +D T+ M+KPR
Sbjct: 18 LAVQYLNTFYGCPKES-------CNLFVLKDTLKKMQKFFGLPQTGDLDQNTIETMRKPR 70
Query: 59 CGLPD 63
CG PD
Sbjct: 71 CGNPD 75
>d1hv5a_ d.92.1.11 (A:) Stromelysin-3 (MMP-11) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 162
Score = 36.0 bits (82), Expect = 7e-04
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 75 FTLDGRKWDHTDLTWRVLSRVDSL 98
F L G +W+ TDLT+R+L L
Sbjct: 2 FVLSGGRWEKTDLTYRILRFPWQL 25
>d1kapp2 d.92.1.6 (P:1-246) Metalloprotease {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 246
Score = 32.9 bits (74), Expect = 0.012
Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 6/69 (8%)
Query: 33 TEARFGNIPVTG----IVDDATLALMKKPRCGLPDTPPLDRRRTKRFTLDGRKWDHTDLT 88
AR G+ V G VD A ++ + + P D T ++ + D +
Sbjct: 15 AYARGGDELVNGHPSYTVDQAAEQIL-REQASWQKAPG-DSVLTLSYSFLTKPNDFFNTP 72
Query: 89 WRVLSRVDS 97
W+ +S + S
Sbjct: 73 WKYVSDIYS 81
>d1k7ia2 d.92.1.6 (A:18-258) Metalloprotease {Erwinia chrysanthemi
[TaxId: 556]}
Length = 241
Score = 32.1 bits (72), Expect = 0.024
Identities = 11/74 (14%), Positives = 19/74 (25%), Gaps = 16/74 (21%)
Query: 30 EQVTEA-----RFGNIPVTGIVDDATLALMKKPRCGLPDTPPLDRRRTKRFTLDGRKWDH 84
V + R + V G K + R +
Sbjct: 8 NSVYDFLRYHDRGDGLTVNG-----------KTSYSIDQAAAQITRENVSWNGTNVFGKS 56
Query: 85 TDLTWRVLSRVDSL 98
+LT++ L V S+
Sbjct: 57 ANLTFKFLQSVSSI 70
>d1y93a1 d.92.1.11 (A:106-263) Macrophage elastase (MMP-12) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 158
Score = 31.4 bits (70), Expect = 0.031
Identities = 8/49 (16%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Query: 79 GRKWDHTDLTWRVLSRVDSL---IMKLLLRSVGNIVNSVNSSDFTQNKT 124
G W +T+R+ + + + +R + ++V F++ T
Sbjct: 1 GPVWRKHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINT 49
>d1bqqm_ d.92.1.11 (M:) Membrane-type matrix metalloproteinase
(CDMT1-MMP) {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 31.1 bits (69), Expect = 0.037
Identities = 5/22 (22%), Positives = 12/22 (54%)
Query: 77 LDGRKWDHTDLTWRVLSRVDSL 98
+ G KW H ++T+ + + +
Sbjct: 1 IQGLKWQHNEITFCIQNYTPKV 22
>d1rm8a_ d.92.1.11 (A:) Matrix metalloproteinase-16 (MMP-16)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 169
Score = 31.1 bits (69), Expect = 0.038
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 79 GRKWDHTDLTWRVLSRVDSL 98
G+KW H +T+ + + +
Sbjct: 1 GQKWQHKHITYSIKNVTPKV 20
>d1sata2 d.92.1.6 (A:4-246) Metalloprotease {Serratia marcescens
[TaxId: 615]}
Length = 243
Score = 30.2 bits (67), Expect = 0.11
Identities = 10/77 (12%), Positives = 17/77 (22%), Gaps = 24/77 (31%)
Query: 30 EQVTEA-----RFGNIPVTG----IVDDATLALMKKPRCGLPDTPPLDRRRTKRFTLDGR 80
+ V + R I + G + A L + R +
Sbjct: 4 DAVDDLLHYHERGNGIQINGKDSFSNEQAGLFIT---RENQ------------TWNGYKV 48
Query: 81 KWDHTDLTWRVLSRVDS 97
LT+ S
Sbjct: 49 FGQPVKLTFSFPDYKFS 65
>d1lbua1 a.20.1.1 (A:1-83) Zn2+ DD-carboxypeptidase, N-terminal
domain {Streptomyces albus G [TaxId: 1962]}
Length = 83
Score = 28.0 bits (62), Expect = 0.20
Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 2/54 (3%)
Query: 5 LQSYLANFGYLEASSNSE-IANLRTKEQVTEARFGN-IPVTGIVDDATLALMKK 56
LQ +A + A + TK V + + GI AT + +
Sbjct: 22 LQIRVAGYPGTGAQLAIDGQFGPATKAAVQRFQSAYGLAADGIAGPATFNKIYQ 75
>d1xuca1 d.92.1.11 (A:104-272) Collagenase-3 (MMP-13) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 169
Score = 27.9 bits (61), Expect = 0.41
Identities = 5/25 (20%), Positives = 11/25 (44%)
Query: 74 RFTLDGRKWDHTDLTWRVLSRVDSL 98
KW +LT+R+++ +
Sbjct: 2 NVFPRTLKWSKMNLTYRIVNYTPDM 26
>d2ovxa1 d.92.1.11 (A:110-443) Gelatinase B (MMP-9) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 159
Score = 28.0 bits (61), Expect = 0.46
Identities = 5/18 (27%), Positives = 11/18 (61%)
Query: 81 KWDHTDLTWRVLSRVDSL 98
KW H ++T+ + + + L
Sbjct: 6 KWHHHNITYWIQNYSEDL 23
>d1i76a_ d.92.1.11 (A:) Neutrophil collagenase (MMP-8) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 163
Score = 27.9 bits (61), Expect = 0.48
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 81 KWDHTDLTWRVLSRVDSL 98
KW+ T+LT+R+ + L
Sbjct: 8 KWERTNLTYRIRNYTPQL 25
>d1hfca_ d.92.1.11 (A:) Fibroblast collagenase (MMP-1) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 157
Score = 27.5 bits (60), Expect = 0.53
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 81 KWDHTDLTWRVLSRVDSL 98
+W+ T LT+R+ + L
Sbjct: 2 RWEQTHLTYRIENYTPDL 19
>d1mmqa_ d.92.1.11 (A:) Matrilysin (MMP-7) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 27.5 bits (60), Expect = 0.56
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 75 FTLDGRKWDHTDLTWRVLSRVDSL 98
+ KW +T+R++S L
Sbjct: 3 LFPNSPKWTSKVVTYRIVSYTRDL 26
>d1qiba_ d.92.1.11 (A:) Gelatinase A {Human (Homo sapiens) [TaxId:
9606]}
Length = 161
Score = 27.2 bits (59), Expect = 0.82
Identities = 5/13 (38%), Positives = 9/13 (69%)
Query: 81 KWDHTDLTWRVLS 93
KWD +T+R++
Sbjct: 4 KWDKNQITYRIIG 16
>d1hy7a_ d.92.1.11 (A:) Stromelysin-1 (MMP-3) {Human (Homo
sapiens), fibroblast [TaxId: 9606]}
Length = 168
Score = 27.2 bits (59), Expect = 0.84
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 81 KWDHTDLTWRVLSRVDSL 98
KW T LT+R+++ L
Sbjct: 9 KWRKTHLTYRIVNYTPDL 26
>d2ha9a1 c.7.1.5 (A:1-440) Uncharacterized protein SP0239
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 440
Score = 25.5 bits (56), Expect = 4.2
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 133 VEMQCQQGKFSLVSSLFKFLSQTKLVYSLINV 164
V+ Q+G L++S+ + L++T V S +N+
Sbjct: 118 VQKGYQKGDEILINSIPRALAETDKVCSSVNI 149
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.134 0.394
Gapped
Lambda K H
0.267 0.0447 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 574,832
Number of extensions: 24320
Number of successful extensions: 66
Number of sequences better than 10.0: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 23
Length of query: 169
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 90
Effective length of database: 1,322,926
Effective search space: 119063340
Effective search space used: 119063340
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.7 bits)