BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5973
(127 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G7K|A Chain A, Crystal Structure Of Methylitaconate-Delta-Isomerase
pdb|3G7K|B Chain B, Crystal Structure Of Methylitaconate-Delta-Isomerase
pdb|3G7K|C Chain C, Crystal Structure Of Methylitaconate-Delta-Isomerase
pdb|3G7K|D Chain D, Crystal Structure Of Methylitaconate-Delta-Isomerase
Length = 391
Score = 29.6 bits (65), Expect = 0.46, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 6/46 (13%)
Query: 72 TPESVPYLATLVAYSEEVRSRCHIKHAAPSPEMD------AFPQVG 111
TP+ + A L+AY EE+R++C +K + E + AFP +
Sbjct: 220 TPDVINGNADLLAYLEEIRAKCCVKIGMAATEKEASEKSPAFPMIA 265
>pdb|3FHN|A Chain A, Structure Of Tip20p
pdb|3FHN|B Chain B, Structure Of Tip20p
pdb|3FHN|C Chain C, Structure Of Tip20p
pdb|3FHN|D Chain D, Structure Of Tip20p
Length = 706
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 3 SREPLLWHFKQLDGAVGLSFKANFH 27
++EP+LW+FK L + F +FH
Sbjct: 238 NQEPVLWNFKSLANNFNVRFTYHFH 262
>pdb|4DD8|A Chain A, Adam-8 Metalloproteinase Domain With Bound Batimastat
pdb|4DD8|B Chain B, Adam-8 Metalloproteinase Domain With Bound Batimastat
pdb|4DD8|C Chain C, Adam-8 Metalloproteinase Domain With Bound Batimastat
pdb|4DD8|D Chain D, Adam-8 Metalloproteinase Domain With Bound Batimastat
Length = 208
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 63 YNKRDKFEVTPESVPYLATLVAYSEEVRSRCHI 95
+N +D+F V+P+ L L+ + R+R H+
Sbjct: 57 WNSQDRFHVSPDPSVTLENLLTWQARQRTRRHL 89
>pdb|2EX1|A Chain A, Crystal Structure Of Mutifunctional Sialyltransferase From
Pasteurella Multocida With Cmp Bound
Length = 399
Score = 25.8 bits (55), Expect = 7.1, Method: Composition-based stats.
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 70 EVTPESVPYLATLVAYSEEVRSRCHIKHA 98
++TPE + TLV +++EV+ ++ A
Sbjct: 208 QLTPEQQAFYLTLVGFNDEVKQSLEVQQA 236
>pdb|2C83|A Chain A, Crystal Structure Of The Sialyltransferase Pm0188
Length = 391
Score = 25.8 bits (55), Expect = 7.4, Method: Composition-based stats.
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 70 EVTPESVPYLATLVAYSEEVRSRCHIKHA 98
++TPE + TLV +++EV+ ++ A
Sbjct: 208 QLTPEQQAFYLTLVGFNDEVKQSLEVQQA 236
>pdb|2EX0|A Chain A, Crystal Structure Of Multifunctional Sialyltransferase
From Pasteurella Multocida
pdb|2EX0|B Chain B, Crystal Structure Of Multifunctional Sialyltransferase
From Pasteurella Multocida
pdb|2IHJ|A Chain A, Crystal Structure Of Multifunctional Sialyltransferase
From Pasteurella Multocida With Cmp-3f-Neu5ac Bound
pdb|2IHK|A Chain A, Crystal Structure Of Multifunctional Sialyltransferase
From Pasteurella Multocida With
Cmp-3f(Equatorial)-Neu5ac Bound
pdb|2IHZ|A Chain A, Crystal Structure Of Multifunctional Sialyltransferase
From Pasteurella Multocida With Cmp-3f-Neu5ac And
Alpha-Lactose Bound
pdb|2IIQ|A Chain A, Crystal Structure Of Pasteurella Multocida
Sialyltransferase In An Open Conformation With Cmp Bound
pdb|2IIQ|B Chain B, Crystal Structure Of Pasteurella Multocida
Sialyltransferase In An Open Conformation With Cmp Bound
Length = 399
Score = 25.8 bits (55), Expect = 7.4, Method: Composition-based stats.
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 70 EVTPESVPYLATLVAYSEEVRSRCHIKHA 98
++TPE + TLV +++EV+ ++ A
Sbjct: 208 QLTPEQQAFYLTLVGFNDEVKQSLEVQQA 236
>pdb|3S44|A Chain A, Crystal Structure Of Pasteurella Multocida
Sialyltransferase M144d Mutant With Cmp Bound
Length = 399
Score = 25.8 bits (55), Expect = 7.4, Method: Composition-based stats.
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 70 EVTPESVPYLATLVAYSEEVRSRCHIKHA 98
++TPE + TLV +++EV+ ++ A
Sbjct: 208 QLTPEQQAFYLTLVGFNDEVKQSLEVQQA 236
>pdb|2II6|A Chain A, Crystal Structure Of Pasteurella Multocida
Sialyltransferase D141n Mutant In Open Conformation With
Cmp Bound
pdb|2IIB|A Chain A, Crystal Structure Of Pasteurella Multocida
Sialyltransferase D141n Mutant With Cmp Bound
Length = 399
Score = 25.8 bits (55), Expect = 7.4, Method: Composition-based stats.
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 70 EVTPESVPYLATLVAYSEEVRSRCHIKHA 98
++TPE + TLV +++EV+ ++ A
Sbjct: 208 QLTPEQQAFYLTLVGFNDEVKQSLEVQQA 236
>pdb|2ILV|A Chain A, Crystal Structure Of Multifunctional Sialyltransferase
From Pasteurella Multocida With Cmp And Alpha-lactose
Bound
Length = 400
Score = 25.8 bits (55), Expect = 7.4, Method: Composition-based stats.
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 70 EVTPESVPYLATLVAYSEEVRSRCHIKHA 98
++TPE + TLV +++EV+ ++ A
Sbjct: 209 QLTPEQQAFYLTLVGFNDEVKQSLEVQQA 237
>pdb|2C84|A Chain A, Crystal Structure Of The Sialyltransferase Pm0188 With Cmp
pdb|2IY8|A Chain A, Crystal Structure Of The Sialyltransferase Pm0188 With
Cmp- 3fneuac And Lactose
pdb|2IY7|A Chain A, Crystal Structure Of The Sialyltransferase Pm0188 With
Cmp- 3fneuac
Length = 389
Score = 25.4 bits (54), Expect = 7.5, Method: Composition-based stats.
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 70 EVTPESVPYLATLVAYSEEVRSRCHIKHA 98
++TPE + TLV +++EV+ ++ A
Sbjct: 208 QLTPEQQAFYLTLVGFNDEVKQSLEVQQA 236
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,569,826
Number of Sequences: 62578
Number of extensions: 115791
Number of successful extensions: 255
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 245
Number of HSP's gapped (non-prelim): 10
length of query: 127
length of database: 14,973,337
effective HSP length: 87
effective length of query: 40
effective length of database: 9,529,051
effective search space: 381162040
effective search space used: 381162040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)