BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5973
(127 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q04690|NF1_MOUSE Neurofibromin OS=Mus musculus GN=Nf1 PE=1 SV=1
Length = 2841
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 56/97 (57%), Positives = 71/97 (73%)
Query: 1 MESREPLLWHFKQLDGAVGLSFKANFHFALVGHLMKGYRHPNSTTITRTTRLLTSILGIV 60
M R PL WH KQ+D VGL+F +NF+FALVGHL+KGYRHP+ + RT R+L ++L +V
Sbjct: 2363 MAIRNPLEWHCKQMDHFVGLNFNSNFNFALVGHLLKGYRHPSPAIVARTVRILHTLLTLV 2422
Query: 61 GKYNKRDKFEVTPESVPYLATLVAYSEEVRSRCHIKH 97
K+ DKFEV +SV YLA L+ SEEVRSRC +KH
Sbjct: 2423 NKHRNCDKFEVNTQSVAYLAALLTVSEEVRSRCSLKH 2459
>sp|P21359|NF1_HUMAN Neurofibromin OS=Homo sapiens GN=NF1 PE=1 SV=2
Length = 2839
Score = 123 bits (309), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 56/97 (57%), Positives = 71/97 (73%)
Query: 1 MESREPLLWHFKQLDGAVGLSFKANFHFALVGHLMKGYRHPNSTTITRTTRLLTSILGIV 60
M R PL WH KQ+D VGL+F +NF+FALVGHL+KGYRHP+ + RT R+L ++L +V
Sbjct: 2361 MAIRNPLEWHCKQMDHFVGLNFNSNFNFALVGHLLKGYRHPSPAIVARTVRILHTLLTLV 2420
Query: 61 GKYNKRDKFEVTPESVPYLATLVAYSEEVRSRCHIKH 97
K+ DKFEV +SV YLA L+ SEEVRSRC +KH
Sbjct: 2421 NKHRNCDKFEVNTQSVAYLAALLTVSEEVRSRCSLKH 2457
>sp|P97526|NF1_RAT Neurofibromin OS=Rattus norvegicus GN=Nf1 PE=1 SV=1
Length = 2820
Score = 123 bits (309), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 56/97 (57%), Positives = 71/97 (73%)
Query: 1 MESREPLLWHFKQLDGAVGLSFKANFHFALVGHLMKGYRHPNSTTITRTTRLLTSILGIV 60
M R PL WH KQ+D VGL+F +NF+FALVGHL+KGYRHP+ + RT R+L ++L +V
Sbjct: 2342 MAIRNPLEWHCKQMDHFVGLNFNSNFNFALVGHLLKGYRHPSPAIVARTVRILHTLLTLV 2401
Query: 61 GKYNKRDKFEVTPESVPYLATLVAYSEEVRSRCHIKH 97
K+ DKFEV +SV YLA L+ SEEVRSRC +KH
Sbjct: 2402 NKHRNCDKFEVNTQSVAYLAALLTVSEEVRSRCSLKH 2438
>sp|P35608|NF1_CHICK Neurofibromin (Fragment) OS=Gallus gallus GN=NF1 PE=2 SV=1
Length = 270
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 25/32 (78%)
Query: 1 MESREPLLWHFKQLDGAVGLSFKANFHFALVG 32
ME R PL WH KQ+D VGL+F +NF+FALVG
Sbjct: 236 MEIRRPLEWHCKQMDHFVGLNFNSNFNFALVG 267
>sp|A7GVZ7|PROA_CAMC5 Gamma-glutamyl phosphate reductase OS=Campylobacter curvus (strain
525.92) GN=proA PE=3 SV=1
Length = 442
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 30 LVGHLMKGYRHPNSTTITRTTRLLTSILGIV 60
+VG ++ G+RHPN IT+ R+ +LGI+
Sbjct: 91 VVGEVLGGWRHPNGMQITK-IRVPLGVLGII 120
>sp|O34980|YTNL_BACSU Uncharacterized hydrolase YtnL OS=Bacillus subtilis (strain 168)
GN=ytnL PE=3 SV=1
Length = 416
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 31/63 (49%)
Query: 44 TTITRTTRLLTSILGIVGKYNKRDKFEVTPESVPYLATLVAYSEEVRSRCHIKHAAPSPE 103
T ++R L S + VGK N + V P++V T+ + EVR++ + A + +
Sbjct: 245 TIVSRNVNPLQSAILTVGKINGGSTWNVIPDTVVIEGTVRTFDSEVRNQVKQRFFAVTEQ 304
Query: 104 MDA 106
+ A
Sbjct: 305 ISA 307
>sp|Q0QLE6|MII_EUBBA 3-methylitaconate isomerase OS=Eubacterium barkeri GN=mii PE=1 SV=1
Length = 380
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 72 TPESVPYLATLVAYSEEVRSRCHIKHAAPSPEMDA 106
TP+ + A L+AY EE+R++C +K + E +A
Sbjct: 220 TPDVINGNADLLAYLEEIRAKCCVKIGMAATEKEA 254
>sp|Q90352|AVT_CATCO [Arg8]-vasotocin receptor OS=Catostomus commersonii PE=2 SV=1
Length = 434
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 14/77 (18%)
Query: 61 GKYNKRDKFEVTPESVPY-------LATLVAY--SEEVRSRCH--IKHAAPSPEMDAFPQ 109
G+ + K E+T SV + L+ L+A +++ SR H IKH + + + AF Q
Sbjct: 18 GRNEEVAKMEITVLSVTFFVAVIGNLSVLLAMHNTKKKSSRMHLFIKHLSLADMVVAFFQ 77
Query: 110 VGDKDSQLCWELTIRSF 126
V QLCWE+T R +
Sbjct: 78 VL---PQLCWEITFRFY 91
>sp|Q4ZNS8|GATC_PSEU2 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C
OS=Pseudomonas syringae pv. syringae (strain B728a)
GN=gatC PE=3 SV=1
Length = 95
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 20/40 (50%)
Query: 42 NSTTITRTTRLLTSILGIVGKYNKRDKFEVTPESVPYLAT 81
N I RTT L SILG+V + D + P + P AT
Sbjct: 20 NDADIPRTTEALNSILGLVDQMQAVDTTGIEPLAHPLEAT 59
>sp|Q87WS0|GATC_PSESM Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C
OS=Pseudomonas syringae pv. tomato (strain DC3000)
GN=gatC PE=3 SV=1
Length = 95
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 20/40 (50%)
Query: 42 NSTTITRTTRLLTSILGIVGKYNKRDKFEVTPESVPYLAT 81
N I RTT L SILG+V + D + P + P AT
Sbjct: 20 NDADIPRTTEALNSILGLVDQMQAVDTTGIEPLAHPLEAT 59
>sp|Q48E93|GATC_PSE14 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C
OS=Pseudomonas syringae pv. phaseolicola (strain 1448A
/ Race 6) GN=gatC PE=3 SV=1
Length = 95
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 20/40 (50%)
Query: 42 NSTTITRTTRLLTSILGIVGKYNKRDKFEVTPESVPYLAT 81
N I RTT L SILG+V + D + P + P AT
Sbjct: 20 NDADIPRTTEALNSILGLVDQMQAVDTTGIEPLAHPLEAT 59
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,223,623
Number of Sequences: 539616
Number of extensions: 1738756
Number of successful extensions: 3396
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 3387
Number of HSP's gapped (non-prelim): 13
length of query: 127
length of database: 191,569,459
effective HSP length: 93
effective length of query: 34
effective length of database: 141,385,171
effective search space: 4807095814
effective search space used: 4807095814
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)