Query psy5973
Match_columns 127
No_of_seqs 72 out of 74
Neff 4.4
Searched_HMMs 46136
Date Fri Aug 16 23:20:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5973.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5973hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1826|consensus 99.8 1.1E-21 2.3E-26 189.4 4.6 113 1-115 2327-2447(2724)
2 PF14225 MOR2-PAG1_C: Cell mor 81.5 2.3 5E-05 35.1 4.1 31 29-61 64-94 (262)
3 PF02985 HEAT: HEAT repeat; I 74.3 2.2 4.7E-05 23.7 1.4 27 32-58 3-29 (31)
4 PF08247 ENOD40: ENOD40 protei 29.3 35 0.00076 16.2 1.0 9 116-124 2-10 (12)
5 KOG4535|consensus 24.1 47 0.001 31.2 1.7 26 33-58 51-76 (728)
6 PF13251 DUF4042: Domain of un 17.3 92 0.002 24.5 1.8 30 28-60 42-71 (182)
7 PRK10726 hypothetical protein; 16.7 76 0.0017 23.5 1.1 22 75-96 54-75 (105)
8 PF10508 Proteasom_PSMB: Prote 16.4 90 0.002 27.6 1.7 53 4-56 52-104 (503)
9 KOG2160|consensus 16.1 89 0.0019 27.3 1.6 47 6-57 106-152 (342)
10 PF10354 DUF2431: Domain of un 16.0 68 0.0015 24.5 0.8 14 23-38 5-18 (166)
No 1
>KOG1826|consensus
Probab=99.84 E-value=1.1e-21 Score=189.43 Aligned_cols=113 Identities=29% Similarity=0.346 Sum_probs=104.6
Q ss_pred CcchhhhHHhhhcccceeeeeeeechhHHHHHHHhhcccCCCCcchhhHHHHHHHHHhHhccccCCCCccccCCchhHHH
Q psy5973 1 MESREPLLWHFKQLDGAVGLSFKANFHFALVGHLMKGYRHPNSTTITRTTRLLTSILGIVGKYNKRDKFEVTPESVPYLA 80 (127)
Q Consensus 1 m~aR~ple~~~~~LD~~~GvsF~snF~FAl~a~LlKGlrh~~~~t~~~t~rvL~tfL~i~~k~~~~d~~~v~~~~l~YLa 80 (127)
|..|+++||++||+|+++|.+|++||+||++|||+||+|||+|.|++++.|+|.+.|.+++++..+| ++...+++|++
T Consensus 2327 ~~~~e~leWh~K~~~~~vgl~F~sn~~fs~~ghmikG~~h~Spttv~~~~r~L~~~m~viaep~~~D--Ev~~~siA~l~ 2404 (2724)
T KOG1826|consen 2327 YSSTEALEWHTKYKKYVVGLVFTSNSFFSARGHMIKGIMHKSPTTVGLCKRMLIETMKVIAEPKITD--EVLFLSIAHLF 2404 (2724)
T ss_pred HhccccchhhHHHHhHHhhhhcccccHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHHhccccccc--hhhHHHHHHHH
Confidence 3457999999999999999999999999999999999999999999999999999999999999888 89999999999
Q ss_pred HhhhhhHhhhhhhccccc--------CCCCCCcccCCCCCCCc
Q psy5973 81 TLVAYSEEVRSRCHIKHA--------APSPEMDAFPQVGDKDS 115 (127)
Q Consensus 81 aLLpvs~ev~s~~~l~~~--------~~~~~~~~~~~~~~d~~ 115 (127)
+++.|+|+++++|+|+|+ ++..+|+.++.+-.+.+
T Consensus 2405 t~~~i~E~l~~rc~l~~~l~wla~ls~es~~~~~~~g~~~~~~ 2447 (2724)
T KOG1826|consen 2405 TYSKIVEGLDPRCDLMKHLFWLATLSLESRHPIIFEGALLFVS 2447 (2724)
T ss_pred HHHHHHHhcCcchHHHHHHHhHhhhhccCCCccccccceecch
Confidence 999999999999999997 67778888877655554
No 2
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=81.53 E-value=2.3 Score=35.07 Aligned_cols=31 Identities=32% Similarity=0.405 Sum_probs=26.6
Q ss_pred HHHHHHhhcccCCCCcchhhHHHHHHHHHhHhc
Q psy5973 29 ALVGHLMKGYRHPNSTTITRTTRLLTSILGIVG 61 (127)
Q Consensus 29 Al~a~LlKGlrh~~~~t~~~t~rvL~tfL~i~~ 61 (127)
++-..++||+|.+. +...|+++|..+..+..
T Consensus 64 Glq~Ll~KGL~Ss~--t~e~tl~lL~~L~~~~~ 94 (262)
T PF14225_consen 64 GLQPLLLKGLRSSS--TYELTLRLLSRLTPLPD 94 (262)
T ss_pred hHHHHHhCccCCCC--cHHHHHHHHHHHhcCCC
Confidence 78999999999999 55599999999987743
No 3
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=74.31 E-value=2.2 Score=23.70 Aligned_cols=27 Identities=15% Similarity=0.159 Sum_probs=22.8
Q ss_pred HHHhhcccCCCCcchhhHHHHHHHHHh
Q psy5973 32 GHLMKGYRHPNSTTITRTTRLLTSILG 58 (127)
Q Consensus 32 a~LlKGlrh~~~~t~~~t~rvL~tfL~ 58 (127)
-++++++.|++++.+..+.+.|..+.+
T Consensus 3 p~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 3 PILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 468899999999999999999988865
No 4
>PF08247 ENOD40: ENOD40 protein; InterPro: IPR013186 The soybean early nodulin 40 (ENOD40) mRNA contains two short overlapping ORFs; in vitro translation yields two peptides of 12 and 24 amino acids []. The putative role of the ENOD40 genes has been in favour of organogenesis, such as induction of the cortical cell divisions that lead to initiation of nodule primordia, in developing lateral roots and embryonic tissues. This supports the hypothesis for a role of ENOD40 in lateral organ development [].
Probab=29.33 E-value=35 Score=16.16 Aligned_cols=9 Identities=44% Similarity=1.372 Sum_probs=7.1
Q ss_pred ceeeeeeec
Q psy5973 116 QLCWELTIR 124 (127)
Q Consensus 116 ~~~~~~~~~ 124 (127)
.+||.-+|.
T Consensus 2 ~l~wqksih 10 (12)
T PF08247_consen 2 ELCWQKSIH 10 (12)
T ss_pred ceeEeeeec
Confidence 489998874
No 5
>KOG4535|consensus
Probab=24.11 E-value=47 Score=31.21 Aligned_cols=26 Identities=19% Similarity=0.310 Sum_probs=22.9
Q ss_pred HHhhcccCCCCcchhhHHHHHHHHHh
Q psy5973 33 HLMKGYRHPNSTTITRTTRLLTSILG 58 (127)
Q Consensus 33 ~LlKGlrh~~~~t~~~t~rvL~tfL~ 58 (127)
.++-|+++|++++++-+++|++.+|+
T Consensus 51 l~~l~lkd~~~~~ra~alqv~~~~l~ 76 (728)
T KOG4535|consen 51 LMTLTLKDPSPKTRACALQVLSAILE 76 (728)
T ss_pred eeEEecCCCChhHHHHHHHHHHHHHH
Confidence 46679999999999999999998875
No 6
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=17.27 E-value=92 Score=24.48 Aligned_cols=30 Identities=13% Similarity=0.246 Sum_probs=23.6
Q ss_pred HHHHHHHhhcccCCCCcchhhHHHHHHHHHhHh
Q psy5973 28 FALVGHLMKGYRHPNSTTITRTTRLLTSILGIV 60 (127)
Q Consensus 28 FAl~a~LlKGlrh~~~~t~~~t~rvL~tfL~i~ 60 (127)
-.+..+++ +||++|.+..+..+|.++|+=.
T Consensus 42 ~sLlt~il---~Dp~~kvR~aA~~~l~~lL~gs 71 (182)
T PF13251_consen 42 PSLLTCIL---KDPSPKVRAAAASALAALLEGS 71 (182)
T ss_pred cchhHHHH---cCCchhHHHHHHHHHHHHHHcc
Confidence 34555555 5999999999999999998743
No 7
>PRK10726 hypothetical protein; Provisional
Probab=16.67 E-value=76 Score=23.46 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=16.9
Q ss_pred chhHHHHhhhhhHhhhhhhccc
Q psy5973 75 SVPYLATLVAYSEEVRSRCHIK 96 (127)
Q Consensus 75 ~l~YLaaLLpvs~ev~s~~~l~ 96 (127)
.-|++.||+|||-=+.=.++..
T Consensus 54 TWPFFLALmPvsVlvGi~l~~L 75 (105)
T PRK10726 54 TWPFFLALMPVSVLVGIALHSL 75 (105)
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 3688999999998777666543
No 8
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=16.39 E-value=90 Score=27.64 Aligned_cols=53 Identities=17% Similarity=0.145 Sum_probs=31.5
Q ss_pred hhhhHHhhhcccceeeeeeeechhHHHHHHHhhcccCCCCcchhhHHHHHHHH
Q psy5973 4 REPLLWHFKQLDGAVGLSFKANFHFALVGHLMKGYRHPNSTTITRTTRLLTSI 56 (127)
Q Consensus 4 R~ple~~~~~LD~~~GvsF~snF~FAl~a~LlKGlrh~~~~t~~~t~rvL~tf 56 (127)
|++++..+.-|+...+-..=..---.....|.+|++||++..+..+++.|...
T Consensus 52 ~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~ 104 (503)
T PF10508_consen 52 REQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRI 104 (503)
T ss_pred hHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 44555555444444432211121334568899999999988777776665444
No 9
>KOG2160|consensus
Probab=16.12 E-value=89 Score=27.29 Aligned_cols=47 Identities=13% Similarity=0.115 Sum_probs=35.4
Q ss_pred hhHHhhhcccceeeeeeeechhHHHHHHHhhcccCCCCcchhhHHHHHHHHH
Q psy5973 6 PLLWHFKQLDGAVGLSFKANFHFALVGHLMKGYRHPNSTTITRTTRLLTSIL 57 (127)
Q Consensus 6 ple~~~~~LD~~~GvsF~snF~FAl~a~LlKGlrh~~~~t~~~t~rvL~tfL 57 (127)
-|++++.++|++..++ + +....-++.++.++.+..+..|.+|+.+..
T Consensus 106 ~Le~lve~iDnAndl~---~--~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~ 152 (342)
T KOG2160|consen 106 NLEELVEDIDNANDLI---S--LGGLVPLLGYLENSDAELRELAARVIGTAV 152 (342)
T ss_pred HHHHHHHhhhhHHhHh---h--ccCHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 4688999999987654 2 233455666999999888888888888764
No 10
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=16.01 E-value=68 Score=24.47 Aligned_cols=14 Identities=29% Similarity=0.795 Sum_probs=9.2
Q ss_pred eechhHHHHHHHhhcc
Q psy5973 23 KANFHFALVGHLMKGY 38 (127)
Q Consensus 23 ~snF~FAl~a~LlKGl 38 (127)
|.||||+++ |.+-+
T Consensus 5 eGdfSFs~s--L~~~~ 18 (166)
T PF10354_consen 5 EGDFSFSLS--LARAF 18 (166)
T ss_pred ccchHHHHH--HHHHc
Confidence 569999955 55433
Done!