Query psy5973
Match_columns 127
No_of_seqs 72 out of 74
Neff 4.4
Searched_HMMs 29240
Date Fri Aug 16 23:21:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5973.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5973hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jek_A ENV polyprotein; envelo 29.1 17 0.00058 21.7 0.7 14 27-40 18-31 (42)
2 2of3_A ZYG-9; multifunctional 15.8 61 0.0021 25.6 1.7 33 30-62 168-200 (266)
3 2qk2_A LP04448P; mini spindles 13.1 1.8E+02 0.0063 20.7 3.5 30 29-58 133-162 (242)
4 2k1h_A Uncharacterized protein 12.6 98 0.0034 20.9 1.8 24 3-26 37-60 (94)
5 1pqx_A Conserved hypothetical 12.4 92 0.0031 21.0 1.6 24 3-26 37-60 (91)
6 4ffb_C Protein STU2; tubulin f 10.2 2E+02 0.0069 21.2 3.0 32 28-59 138-169 (278)
7 2euc_A Hypothetical protein YF 9.9 1.1E+02 0.0038 22.1 1.3 14 75-88 73-86 (130)
8 3qxf_A Endoglucanase; cellulas 9.1 2.6E+02 0.0087 23.1 3.5 56 29-85 223-286 (355)
9 1ibr_B P95, importin beta-1 su 9.0 2.4E+02 0.0082 21.3 3.1 34 29-62 408-441 (462)
10 1qmo_A Mannose binding lectin, 9.0 45 0.0015 23.0 -1.0 13 20-32 66-78 (113)
No 1
>1jek_A ENV polyprotein; envelope glycoprotein, retrovirus, HIV, SIV, GP41, viral Pro; 1.50A {Synthetic} SCOP: h.3.2.1
Probab=29.13 E-value=17 Score=21.67 Aligned_cols=14 Identities=43% Similarity=0.767 Sum_probs=12.2
Q ss_pred hHHHHHHHhhcccC
Q psy5973 27 HFALVGHLMKGYRH 40 (127)
Q Consensus 27 ~FAl~a~LlKGlrh 40 (127)
+||++-|+.||.|-
T Consensus 18 ~yamvqhvakgiri 31 (42)
T 1jek_A 18 SYAMVQHIAKGIRI 31 (42)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHH
Confidence 58999999999874
No 2
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=15.79 E-value=61 Score=25.58 Aligned_cols=33 Identities=9% Similarity=0.155 Sum_probs=26.9
Q ss_pred HHHHHhhcccCCCCcchhhHHHHHHHHHhHhcc
Q psy5973 30 LVGHLMKGYRHPNSTTITRTTRLLTSILGIVGK 62 (127)
Q Consensus 30 l~a~LlKGlrh~~~~t~~~t~rvL~tfL~i~~k 62 (127)
+...++.|++|-+.+++...+.+|..+++-.+-
T Consensus 168 v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~ 200 (266)
T 2of3_A 168 MTPMLLDALKSKNARQRSECLLVIEYYITNAGI 200 (266)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCC
Confidence 667789999999999888888888888776543
No 3
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=13.10 E-value=1.8e+02 Score=20.66 Aligned_cols=30 Identities=13% Similarity=0.206 Sum_probs=19.2
Q ss_pred HHHHHHhhcccCCCCcchhhHHHHHHHHHh
Q psy5973 29 ALVGHLMKGYRHPNSTTITRTTRLLTSILG 58 (127)
Q Consensus 29 Al~a~LlKGlrh~~~~t~~~t~rvL~tfL~ 58 (127)
.+.-.|++++.|.++..+..++..|..++.
T Consensus 133 ~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~ 162 (242)
T 2qk2_A 133 AQQESIVESLSNKNPSVKSETALFIARALT 162 (242)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 355666777777776666666666666553
No 4
>2k1h_A Uncharacterized protein Ser13; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Staphylococcus epidermidis}
Probab=12.65 E-value=98 Score=20.93 Aligned_cols=24 Identities=8% Similarity=0.354 Sum_probs=21.3
Q ss_pred chhhhHHhhhcccceeeeeeeech
Q psy5973 3 SREPLLWHFKQLDGAVGLSFKANF 26 (127)
Q Consensus 3 aR~ple~~~~~LD~~~GvsF~snF 26 (127)
.++||....-++|.+.||-|.+||
T Consensus 37 ~~SPLA~~LF~i~gVk~Vf~g~dF 60 (94)
T 2k1h_A 37 GQPEFINRLFEIEGVKSIFYVLDF 60 (94)
T ss_dssp TSCHHHHHHHTSTTEEEEEEETTE
T ss_pred cCCHHHHHhhCCCCeeEEEEeCCE
Confidence 468999999899999999999886
No 5
>1pqx_A Conserved hypothetical protein; ZR18,structure, autostructure,spins,autoassign, northeast structural genomics consortium; NMR {Staphylococcus aureus subsp} SCOP: d.267.1.1 PDB: 2ffm_A
Probab=12.43 E-value=92 Score=20.97 Aligned_cols=24 Identities=13% Similarity=0.308 Sum_probs=21.2
Q ss_pred chhhhHHhhhcccceeeeeeeech
Q psy5973 3 SREPLLWHFKQLDGAVGLSFKANF 26 (127)
Q Consensus 3 aR~ple~~~~~LD~~~GvsF~snF 26 (127)
.++||....-++|.+.||-|..||
T Consensus 37 ~~SPLA~~LF~i~gVk~Vf~g~dF 60 (91)
T 1pqx_A 37 SQPAFINDILKVEGVKSIFHVMDF 60 (91)
T ss_dssp SCCHHHHHHHHSTTEEEEEEETTE
T ss_pred cCCHHHHHhhCCCCeeEEEEeCCE
Confidence 468999888899999999999886
No 6
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=10.25 E-value=2e+02 Score=21.17 Aligned_cols=32 Identities=6% Similarity=0.063 Sum_probs=24.1
Q ss_pred HHHHHHHhhcccCCCCcchhhHHHHHHHHHhH
Q psy5973 28 FALVGHLMKGYRHPNSTTITRTTRLLTSILGI 59 (127)
Q Consensus 28 FAl~a~LlKGlrh~~~~t~~~t~rvL~tfL~i 59 (127)
..+.-.|+.|+.|-+|+.+..++..|..+|+-
T Consensus 138 ~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~ 169 (278)
T 4ffb_C 138 TQSVELVIPFFEKKLPKLIAAAANCVYELMAA 169 (278)
T ss_dssp HHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 35567778888888888877788777777654
No 7
>2euc_A Hypothetical protein YFMB; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus subtilis} SCOP: a.249.1.1
Probab=9.86 E-value=1.1e+02 Score=22.14 Aligned_cols=14 Identities=36% Similarity=0.560 Sum_probs=11.0
Q ss_pred chhHHHHhhhhhHh
Q psy5973 75 SVPYLATLVAYSEE 88 (127)
Q Consensus 75 ~l~YLaaLLpvs~e 88 (127)
-.+||.+|+|+-..
T Consensus 73 LssYL~~LlpfvT~ 86 (130)
T 2euc_A 73 LSGYLSTLLPYVTA 86 (130)
T ss_dssp HHHHHHHHGGGCCH
T ss_pred HHHHHHHHHHHHHH
Confidence 37899999998543
No 8
>3qxf_A Endoglucanase; cellulase, GH8, cellulose synthesis, cellulose degradation,; 1.85A {Escherichia coli k-12} PDB: 3qxq_A*
Probab=9.08 E-value=2.6e+02 Score=23.10 Aligned_cols=56 Identities=13% Similarity=0.128 Sum_probs=30.7
Q ss_pred HHHHHHhhcccCCCCcchhhHHHHHHHHHhHhcccc-C-------CCCccccCCchhHHHHhhhh
Q psy5973 29 ALVGHLMKGYRHPNSTTITRTTRLLTSILGIVGKYN-K-------RDKFEVTPESVPYLATLVAY 85 (127)
Q Consensus 29 Al~a~LlKGlrh~~~~t~~~t~rvL~tfL~i~~k~~-~-------~d~~~v~~~~l~YLaaLLpv 85 (127)
|+=..|.=|+..+.-......++-+..|...+.+.. . .++. .....+||.+||||+
T Consensus 223 AiRv~lwagm~~~~d~~~~~ll~~~~~~~~~~~~~~~~P~~vd~~tg~~-~~~~p~Gf~aallp~ 286 (355)
T 3qxf_A 223 AIRVYMWVGMMPDSDPQKARMLNRFKPMATFTEKNGYPPEKVDVATGKA-QGKGPVGFSAAMLPF 286 (355)
T ss_dssp THHHHHHHHTSCTTCHHHHHHHHHTHHHHHHHHHHSSCCSEEETTTCCE-ESCCCHHHHHHHHHH
T ss_pred HhHHHhhccccCCCChHHHHHHHHHHHHHHHHhhcCCCCeEEECCCCcc-CCCCChhHHHHHHHH
Confidence 444466667866543332334444455555443222 1 1222 345669999999999
No 9
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=9.04 E-value=2.4e+02 Score=21.31 Aligned_cols=34 Identities=9% Similarity=0.140 Sum_probs=29.4
Q ss_pred HHHHHHhhcccCCCCcchhhHHHHHHHHHhHhcc
Q psy5973 29 ALVGHLMKGYRHPNSTTITRTTRLLTSILGIVGK 62 (127)
Q Consensus 29 Al~a~LlKGlrh~~~~t~~~t~rvL~tfL~i~~k 62 (127)
.+.-.|++.++++.+..+..|..+|..+.+...+
T Consensus 408 ~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~ 441 (462)
T 1ibr_B 408 QAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE 441 (462)
T ss_dssp THHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccc
Confidence 4678899999999999999999999999887744
No 10
>1qmo_A Mannose binding lectin, FRIL; crosslink, hematopoietic progenitor, sugar complex; HET: MAN; 3.5A {Dolichos lab lab} SCOP: b.29.1.1
Probab=8.98 E-value=45 Score=23.01 Aligned_cols=13 Identities=23% Similarity=0.414 Sum_probs=10.9
Q ss_pred eeeeechhHHHHH
Q psy5973 20 LSFKANFHFALVG 32 (127)
Q Consensus 20 vsF~snF~FAl~a 32 (127)
-||.++|.|++..
T Consensus 66 aSFsT~F~F~I~~ 78 (113)
T 1qmo_A 66 TSFDTIINFEIST 78 (113)
T ss_dssp EEEEEEEEEEEEC
T ss_pred EeeEEEEEEEEec
Confidence 4999999999763
Done!