Query psy5973
Match_columns 127
No_of_seqs 72 out of 74
Neff 4.4
Searched_HMMs 13730
Date Fri Aug 16 23:21:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5973.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/5973hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ibrb_ a.118.1.1 (B:) Importi 24.5 52 0.0038 22.5 4.7 35 29-63 407-441 (458)
2 d1ng7a_ a.178.1.1 (A:) Soluble 12.8 22 0.0016 21.4 0.1 15 86-104 31-45 (60)
3 d1oyza_ a.118.1.16 (A:) Hypoth 11.1 44 0.0032 21.6 1.3 24 33-56 23-46 (276)
4 d1b3ua_ a.118.1.2 (A:) Constan 10.7 35 0.0025 25.3 0.7 53 31-89 12-64 (588)
5 d1h6pa_ a.146.1.1 (A:) TRF2 {H 10.2 1.8E+02 0.013 20.7 4.7 56 29-86 40-95 (203)
6 d1prtf_ b.40.2.1 (F:) Pertussi 7.4 26 0.0019 22.4 -1.1 37 1-37 31-67 (98)
7 d2vglb_ a.118.1.10 (B:) Adapti 7.2 85 0.0062 24.1 1.7 26 30-55 84-109 (579)
8 d2pxrc1 a.73.1.1 (C:1-145) HIV 7.1 1.2E+02 0.0084 20.8 2.2 28 49-82 16-43 (145)
9 d1qbkb_ a.118.1.1 (B:) Karyoph 6.5 1.2E+02 0.0088 23.8 2.4 38 24-61 473-510 (888)
10 d1ohfa_ b.121.4.8 (A:) Tetraom 6.3 29 0.0021 28.6 -1.7 19 21-41 437-455 (539)
No 1
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.51 E-value=52 Score=22.52 Aligned_cols=35 Identities=9% Similarity=0.115 Sum_probs=29.4
Q ss_pred HHHHHHhhcccCCCCcchhhHHHHHHHHHhHhccc
Q psy5973 29 ALVGHLMKGYRHPNSTTITRTTRLLTSILGIVGKY 63 (127)
Q Consensus 29 Al~a~LlKGlrh~~~~t~~~t~rvL~tfL~i~~k~ 63 (127)
-+.-.|+++++|+.+..+..|..+|..+.+.....
T Consensus 407 ~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~~~~ 441 (458)
T d1ibrb_ 407 QAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEA 441 (458)
T ss_dssp THHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcc
Confidence 46788999999999999999999999988776433
No 2
>d1ng7a_ a.178.1.1 (A:) Soluble domain of poliovirus core protein 3a {Poliovirus type 1, strain Mahoney [TaxId: 12080]}
Probab=12.80 E-value=22 Score=21.40 Aligned_cols=15 Identities=40% Similarity=0.481 Sum_probs=11.5
Q ss_pred hHhhhhhhcccccCCCCCC
Q psy5973 86 SEEVRSRCHIKHAAPSPEM 104 (127)
Q Consensus 86 s~ev~s~~~l~~~~~~~~~ 104 (127)
|+|||.+|+-| +|..
T Consensus 31 SeEVReYCk~k----gWii 45 (60)
T d1ng7a_ 31 SQEVRDYCEKK----GWIV 45 (60)
T ss_dssp CHHHHHHHHHH----TCCC
T ss_pred cHHHHHHHHHC----Ceee
Confidence 79999999654 4655
No 3
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}
Probab=11.10 E-value=44 Score=21.64 Aligned_cols=24 Identities=21% Similarity=0.182 Sum_probs=19.3
Q ss_pred HHhhcccCCCCcchhhHHHHHHHH
Q psy5973 33 HLMKGYRHPNSTTITRTTRLLTSI 56 (127)
Q Consensus 33 ~LlKGlrh~~~~t~~~t~rvL~tf 56 (127)
.|++.+.|++|..+..|.++|..+
T Consensus 23 ~L~~~L~d~~~~vR~~A~~~L~~~ 46 (276)
T d1oyza_ 23 ELFRLLDDHNSLKRISSARVLQLR 46 (276)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhh
Confidence 478889999998888888877654
No 4
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.66 E-value=35 Score=25.30 Aligned_cols=53 Identities=19% Similarity=0.301 Sum_probs=33.6
Q ss_pred HHHHhhcccCCCCcchhhHHHHHHHHHhHhccccCCCCccccCCchhHHHHhhhhhHhh
Q psy5973 31 VGHLMKGYRHPNSTTITRTTRLLTSILGIVGKYNKRDKFEVTPESVPYLATLVAYSEEV 89 (127)
Q Consensus 31 ~a~LlKGlrh~~~~t~~~t~rvL~tfL~i~~k~~~~d~~~v~~~~l~YLaaLLpvs~ev 89 (127)
-+.|.+++++.++..+-.++|-|..+-...+... ...+-+||+.-++--.+||
T Consensus 12 i~~l~~~l~~~~~~~R~~a~~~l~~ia~~lg~~~------~~~~lip~l~~~~~~~~ev 64 (588)
T d1b3ua_ 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVER------TRSELLPFLTDTIYDEDEV 64 (588)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHH------HHHTHHHHHHHTCCCCHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcHh------hHHHHHHHHHHHhcCcHHH
Confidence 4668999999998888888888877654433211 1133456666555544443
No 5
>d1h6pa_ a.146.1.1 (A:) TRF2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.16 E-value=1.8e+02 Score=20.74 Aligned_cols=56 Identities=14% Similarity=0.219 Sum_probs=36.1
Q ss_pred HHHHHHhhcccCCCCcchhhHHHHHHHHHhHhccccCCCCccccCCchhHHHHhhhhh
Q psy5973 29 ALVGHLMKGYRHPNSTTITRTTRLLTSILGIVGKYNKRDKFEVTPESVPYLATLVAYS 86 (127)
Q Consensus 29 Al~a~LlKGlrh~~~~t~~~t~rvL~tfL~i~~k~~~~d~~~v~~~~l~YLaaLLpvs 86 (127)
.+-|+|+++++-+.... .++|+..-|-.|.......-.|+.+....|--.||.-..
T Consensus 40 i~eall~~~~~~~~~~~--kti~i~QfL~RI~eG~~LD~~Fd~~~~~TPLESAl~v~~ 95 (203)
T d1h6pa_ 40 IMQALLVRPLGKEHTVS--RLLRVMQCLSRIEEGENLDCSFDMEAELTPLESAINVLE 95 (203)
T ss_dssp HHHHHTTSCCC----CH--HHHHHHHHHHHHHTTTCC--CCCTTCSSCHHHHHHHHHH
T ss_pred HHHHHHhCccccccchh--hHHHHHHHHHHHHcCCCCCCccCCCCCCChHHHHHHHHH
Confidence 34567888887777444 899999999999887776556766666666666665443
No 6
>d1prtf_ b.40.2.1 (F:) Pertussis toxin S5 subunit {Bordetella pertussis [TaxId: 520]}
Probab=7.37 E-value=26 Score=22.42 Aligned_cols=37 Identities=16% Similarity=0.159 Sum_probs=24.6
Q ss_pred CcchhhhHHhhhcccceeeeeeeechhHHHHHHHhhc
Q psy5973 1 MESREPLLWHFKQLDGAVGLSFKANFHFALVGHLMKG 37 (127)
Q Consensus 1 m~aR~ple~~~~~LD~~~GvsF~snF~FAl~a~LlKG 37 (127)
|.+|+-.+.....-.+.-|--|+.-..||+.|+-+|.
T Consensus 31 m~grslvraclsda~~~~~twfdtmlgfaisayalks 67 (98)
T d1prtf_ 31 MSGRSLVRACLSDAGHEHDTWFDTMLGFAISAYALKS 67 (98)
T ss_dssp CTTSCEEEEEEECCSCTTCHHHHHHHHHHHHHHHHTC
T ss_pred ccchHHHHHHHhhhccccccHHHHHHHHHHHHHHhhh
Confidence 3444444444444555667778888889999998874
No 7
>d2vglb_ a.118.1.10 (B:) Adaptin beta subunit N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.16 E-value=85 Score=24.10 Aligned_cols=26 Identities=19% Similarity=0.275 Sum_probs=21.3
Q ss_pred HHHHHhhcccCCCCcchhhHHHHHHH
Q psy5973 30 LVGHLMKGYRHPNSTTITRTTRLLTS 55 (127)
Q Consensus 30 l~a~LlKGlrh~~~~t~~~t~rvL~t 55 (127)
++-.|.|.+.+++|..++.|+|.|+.
T Consensus 84 ~intl~kDl~d~n~~iR~lALr~L~~ 109 (579)
T d2vglb_ 84 AVNSFVKDCEDPNPLIRALAVRTMGC 109 (579)
T ss_dssp THHHHGGGSSSSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHc
Confidence 36778999999998888888888764
No 8
>d2pxrc1 a.73.1.1 (C:1-145) HIV-1 capsid protein {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=7.07 E-value=1.2e+02 Score=20.77 Aligned_cols=28 Identities=25% Similarity=0.525 Sum_probs=19.0
Q ss_pred HHHHHHHHHhHhccccCCCCccccCCchhHHHHh
Q psy5973 49 TTRLLTSILGIVGKYNKRDKFEVTPESVPYLATL 82 (127)
Q Consensus 49 t~rvL~tfL~i~~k~~~~d~~~v~~~~l~YLaaL 82 (127)
.=|.|.++...+..+. -+++.+++|.||
T Consensus 16 sPRtlnaWVK~veek~------f~pEvipmF~AL 43 (145)
T d2pxrc1 16 SPRTLNAWVKVVEEKA------FSPEVIPMFSAL 43 (145)
T ss_dssp CHHHHHHHHHHHHHHT------TSTTHHHHHHHT
T ss_pred CHHHHHHHHHHHHhcc------CCHHHHHHHHHH
Confidence 3478999998886655 335566666665
No 9
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.53 E-value=1.2e+02 Score=23.76 Aligned_cols=38 Identities=11% Similarity=0.096 Sum_probs=30.1
Q ss_pred echhHHHHHHHhhcccCCCCcchhhHHHHHHHHHhHhc
Q psy5973 24 ANFHFALVGHLMKGYRHPNSTTITRTTRLLTSILGIVG 61 (127)
Q Consensus 24 snF~FAl~a~LlKGlrh~~~~t~~~t~rvL~tfL~i~~ 61 (127)
.+|.-.+...|++++.+++++.+..+...|..|.+-..
T Consensus 473 ~~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~ 510 (888)
T d1qbkb_ 473 DTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEAC 510 (888)
T ss_dssp HHHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 34555677789999999998888888899998887653
No 10
>d1ohfa_ b.121.4.8 (A:) Tetraomegavirus capsid protein {Nudaurelia capensis omega virus [TaxId: 12541]}
Probab=6.30 E-value=29 Score=28.62 Aligned_cols=19 Identities=16% Similarity=0.284 Sum_probs=14.1
Q ss_pred eeeechhHHHHHHHhhcccCC
Q psy5973 21 SFKANFHFALVGHLMKGYRHP 41 (127)
Q Consensus 21 sF~snF~FAl~a~LlKGlrh~ 41 (127)
+||+||+||+|. ++|+-++
T Consensus 437 T~D~N~s~Av~H--f~sls~S 455 (539)
T d1ohfa_ 437 SLDVNMSTAVCH--FRSLSKS 455 (539)
T ss_dssp CBCSSBCEEEEE--EEEEETT
T ss_pred hhhcccceeeee--eecCccc
Confidence 699999999875 4555554
Done!