RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy5973
         (127 letters)



>gnl|CDD|235777 PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier
           protein subunit; Validated.
          Length = 155

 Score = 28.2 bits (64), Expect = 0.75
 Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 3/24 (12%)

Query: 98  AAPSPEMDAFPQVGD---KDSQLC 118
            APSP+   F +VGD   +   LC
Sbjct: 92  RAPSPDAPPFVEVGDTVKEGQTLC 115


>gnl|CDD|227918 COG5631, COG5631, Predicted transcription regulator, contains HTH
           domain (MarR family) [Transcription].
          Length = 199

 Score = 27.6 bits (61), Expect = 1.7
 Identities = 10/37 (27%), Positives = 12/37 (32%)

Query: 70  EVTPESVPYLATLVAYSEEVRSRCHIKHAAPSPEMDA 106
           EVT E         A   ++R    I      PEM  
Sbjct: 137 EVTYEVTALGHRACARYADIREVLLIDAVTRIPEMAD 173


>gnl|CDD|119425 cd05165, PI3Kc_I, Phosphoinositide 3-kinase (PI3K), class I,
           catalytic domain; The PI3K catalytic domain family is
           part of a larger superfamily that includes the catalytic
           domains of other kinases such as the typical
           serine/threonine/tyrosine protein kinases (PKs),
           aminoglycoside phosphotransferase, choline kinase, and
           RIO kinases. PI3Ks catalyze the transfer of the
           gamma-phosphoryl group from ATP to the 3-hydroxyl of the
           inositol ring of D-myo-phosphatidylinositol (PtdIns) or
           its derivatives. PI3Ks play an important role in a
           variety of fundamental cellular processes, including
           cell motility, the Ras pathway, vesicle trafficking and
           secretion, immune cell activation and apoptosis. They
           can be divided into three main classes (I, II, and III),
           defined by their substrate specificity, regulation, and
           domain structure. Class I PI3Ks are the only enzymes
           capable of converting PtdIns(4,5)P2 to the critical
           second messenger PtdIns(3,4,5)P3. In vitro, they can
           also phosphorylate the substrates PtdIns and PtdIns(4)P.
           Class I enzymes are heterodimers and exist in multiple
           isoforms consisting of one catalytic subunit (out of
           four isoforms) and one of several regulatory subunits.
           They are further classified into class IA (alpha, beta
           and delta) and IB (gamma).
          Length = 366

 Score = 25.8 bits (57), Expect = 6.9
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 37  GYRHPNSTTITRTTRLLTSILG-IVGKYNKRDKFEVTPESVPYLAT 81
           G RH ++  +  T +L     G I+G  N + KF +  E VP++ T
Sbjct: 217 GDRHNDNIMVKETGQLFHIDFGHILG--NYKSKFGINRERVPFVLT 260


>gnl|CDD|237486 PRK13736, PRK13736, conjugal transfer protein TraK; Provisional.
          Length = 245

 Score = 25.5 bits (56), Expect = 8.5
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 6/43 (13%)

Query: 48  RTTRLLTSILGIVGKYNKRDKFEVTPESVPYLATLVAYSEEVR 90
           RT +L++ + G        ++ +   ES PY + LVA S+ VR
Sbjct: 113 RTIQLVSDLRG------TGEEAKAWEESQPYESLLVALSQAVR 149


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.321    0.135    0.413 

Gapped
Lambda     K      H
   0.267   0.0736    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,289,824
Number of extensions: 524738
Number of successful extensions: 382
Number of sequences better than 10.0: 1
Number of HSP's gapped: 382
Number of HSP's successfully gapped: 9
Length of query: 127
Length of database: 10,937,602
Length adjustment: 85
Effective length of query: 42
Effective length of database: 7,167,512
Effective search space: 301035504
Effective search space used: 301035504
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.2 bits)