RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy5973
         (127 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 37.1 bits (85), Expect = 8e-04
 Identities = 12/56 (21%), Positives = 18/56 (32%), Gaps = 12/56 (21%)

Query: 59  IVGKYNKRDKFEVTPESVP----YLATLVAYSEEVRSRCHIKHAAPSPEMDAFPQV 110
           IV  YN    F+      P    Y  + + +        H+K+      M  F  V
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH--------HLKNIEHPERMTLFRMV 496


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 29.1 bits (64), Expect = 0.30
 Identities = 5/18 (27%), Positives = 8/18 (44%), Gaps = 5/18 (27%)

Query: 68 KFEVT-----PESVPYLA 80
          K + +      +S P LA
Sbjct: 24 KLQASLKLYADDSAPALA 41


>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia
           cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
          Length = 321

 Score = 27.9 bits (63), Expect = 0.83
 Identities = 7/34 (20%), Positives = 11/34 (32%)

Query: 72  TPESVPYLATLVAYSEEVRSRCHIKHAAPSPEMD 105
            PE   +   L +       + H  H  P+   D
Sbjct: 149 DPEGTAFFDELTSDEWRSDVKIHHDHGDPTKAFD 182


>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid
           biosynthesis, hamme structure, selenomethionine, ligase,
           transferase; HET: BTN; 1.80A {Escherichia coli} SCOP:
           b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
          Length = 80

 Score = 25.6 bits (57), Expect = 2.3
 Identities = 8/16 (50%), Positives = 10/16 (62%)

Query: 98  AAPSPEMDAFPQVGDK 113
             PSP+  AF +VG K
Sbjct: 17  RTPSPDAKAFIEVGQK 32


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.321    0.135    0.413 

Gapped
Lambda     K      H
   0.267   0.0840    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,851,456
Number of extensions: 94114
Number of successful extensions: 187
Number of sequences better than 10.0: 1
Number of HSP's gapped: 186
Number of HSP's successfully gapped: 7
Length of query: 127
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 44
Effective length of database: 4,384,350
Effective search space: 192911400
Effective search space used: 192911400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.2 bits)