BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5978
(159 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3U5C|K Chain K, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|K Chain K, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 105
Score = 116 bits (290), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 58/111 (52%), Positives = 78/111 (70%), Gaps = 10/111 (9%)
Query: 1 MLMPKKNRYIIYEYLFKEGVLVAKKDFHAPKHPELDVPNLQVIKTLQSLKSKGWVNEQFA 60
MLMPK++R I++YLF+EGV+VAKKDF+ KH E+D NL VIK LQSL SKG+V QF+
Sbjct: 1 MLMPKEDRNKIHQYLFQEGVVVAKKDFNQAKHEEIDTKNLYVIKALQSLTSKGYVKTQFS 60
Query: 61 WRHYYWYITNDGIEKLRGVLNIPDEIVPSTLKRQARTTDASKVPRQMTQRP 111
W++YY+ +T +G+E LR LN+P+ IVP T ++ R TQRP
Sbjct: 61 WQYYYYTLTEEGVEYLREYLNLPEHIVPGTYIQE----------RNPTQRP 101
>pdb|3ZEY|D Chain D, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 172
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 60/100 (60%), Gaps = 5/100 (5%)
Query: 3 MPKKNRYIIYEYLFKEGVLVAKKDFHAPKHPEL-----DVPNLQVIKTLQSLKSKGWVNE 57
+PK +R +Y + F EGV+ KKD L +P LQV++ ++SLKS+G + E
Sbjct: 5 VPKSSRDDVYRFFFTEGVVSCKKDPLGTWKGTLGGKTFKLPTLQVMQLMRSLKSRGLIKE 64
Query: 58 QFAWRHYYWYITNDGIEKLRGVLNIPDEIVPSTLKRQART 97
QFAWRH+YW + ++GI +R L + + VP+T K +T
Sbjct: 65 QFAWRHFYWTLNDEGINYMRKYLYLGADAVPNTHKVDHKT 104
>pdb|2XZM|7 Chain 7, Crystal Structure Of The Eukaryotic 40s Ribosomal
Subunit In Complex With Initiation Factor 1. This File
Contains The 40s Subunit And Initiation Factor For
Molecule 1
pdb|2XZN|7 Chain 7, Crystal Structure Of The Eukaryotic 40s Ribosomal
Subunit In Complex With Initiation Factor 1. This File
Contains The 40s Subunit And Initiation Factor For
Molecule 2
Length = 162
Score = 66.6 bits (161), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 11 IYEYLFKEGVLVAKKDFHAPKHPELDVPNLQVIKTLQSLKSKGWVNEQFAWRHYYWYITN 70
IY+ L ++GV V KKDF H E VPNL ++SLK +G++ E F W Y+Y+
Sbjct: 12 IYKQLLQDGVFVLKKDFEG-HHEETGVPNLHCYILVRSLKDRGFLEEIFNWGFTYYYLNK 70
Query: 71 DGIEKLRGVLNIP-DEIVPSTLK 92
+G E L+ L I D ++P T K
Sbjct: 71 EGCEYLKTKLGISADNVIPKTFK 93
>pdb|3LK7|A Chain A, The Crystal Structure Of Udp-N-Acetylmuramoylalanine-D-
Glutamate (Murd) Ligase From Streptococcus Agalactiae To
1.5a
Length = 451
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 46/110 (41%), Gaps = 12/110 (10%)
Query: 38 PNLQVIKTL--QSLKSKGWVNEQFAWRHYYWYITNDGIEKLRGVLNIPDEIVPSTLKRQA 95
P++ VI L L G + A + W I N VLN I K A
Sbjct: 181 PHIAVITNLXPTHLDYHGSFEDYVAAK---WNIQNQXSSSDFLVLNFNQGIS----KELA 233
Query: 96 RTTDASKVPRQMTQRPDGGRGADDRMSYRKGPQGVDKKADVGA-GSTEVE 144
+TT A+ VP T++ DG D ++ Y+ + + D+G GS VE
Sbjct: 234 KTTKATIVPFSTTEKVDGAYVQDKQLFYKG--ENIXSVDDIGVPGSHNVE 281
>pdb|3CWW|A Chain A, Crystal Structure Of Ide-Bradykinin Complex
pdb|3CWW|B Chain B, Crystal Structure Of Ide-Bradykinin Complex
Length = 990
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
Query: 46 LQSLKSKGWVN-----EQFAWRHYYWYITNDGIEKLRGVLNIPDEIV 87
L LKSKGWVN ++ R + ++I N + + G+L++ D I+
Sbjct: 318 LSELKSKGWVNTLVGGQKAGARGFMFFIINVDLTE-EGLLHVEDIIL 363
>pdb|1E1H|A Chain A, Crystal Structure Of Recombinant Botulinum Neurotoxin Type
A Light Chain, Self-Inhibiting Zn Endopeptidase.
pdb|1E1H|C Chain C, Crystal Structure Of Recombinant Botulinum Neurotoxin Type
A Light Chain, Self-Inhibiting Zn Endopeptidase
Length = 287
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 96 RTTDASKVPRQMTQRPDGGRGADDR-MSYRKGPQGVD 131
+ T A+K RQ PD G DD+ M+Y+ GVD
Sbjct: 19 KETAAAKFERQHMDSPDLGTDDDDKAMAYKDPVNGVD 55
>pdb|3E4Z|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Insulin-Like Growth Factor Ii
pdb|3E4Z|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Insulin-Like Growth Factor Ii
Length = 990
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
Query: 46 LQSLKSKGWVN-----EQFAWRHYYWYITNDGIEKLRGVLNIPDEIV 87
L LKSKGWVN ++ R + ++I N + + G+L++ D I+
Sbjct: 318 LSELKSKGWVNTLVGGQKEGARGFMFFIINVDLTE-EGLLHVEDIIL 363
>pdb|2WBY|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Insulin
pdb|2WBY|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Insulin
pdb|2WC0|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Iodinated Insulin
pdb|2WC0|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Iodinated Insulin
pdb|3H44|A Chain A, Crystal Structure Of Insulin Degrading Enzyme In Complex
With Macrophage Inflammatory Protein 1 Alpha
pdb|3H44|B Chain B, Crystal Structure Of Insulin Degrading Enzyme In Complex
With Macrophage Inflammatory Protein 1 Alpha
pdb|3OFI|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|3OFI|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|3N56|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human B-Type Natriuretic Peptide (Bnp)
pdb|3N56|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human B-Type Natriuretic Peptide (Bnp)
pdb|3N57|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human Atrial Natriuretic Peptide (Anp)
pdb|3N57|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human Atrial Natriuretic Peptide (Anp)
pdb|2YPU|A Chain A, Human Insulin Degrading Enzyme E111q In Complex With
Inhibitor Compound 41367
pdb|2YPU|B Chain B, Human Insulin Degrading Enzyme E111q In Complex With
Inhibitor Compound 41367
Length = 990
Score = 26.9 bits (58), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
Query: 46 LQSLKSKGWVN-----EQFAWRHYYWYITNDGIEKLRGVLNIPDEIV 87
L LKSKGWVN ++ R + ++I N + + G+L++ D I+
Sbjct: 318 LSELKSKGWVNTLVGGQKEGARGFMFFIINVDLTE-EGLLHVEDIIL 363
>pdb|3QZ2|A Chain A, The Structure Of Cysteine-Free Human Insulin Degrading
Enzyme
pdb|3QZ2|B Chain B, The Structure Of Cysteine-Free Human Insulin Degrading
Enzyme
pdb|4DTT|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme (ide)
In Complex With Compund 41367
pdb|4DTT|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme (ide)
In Complex With Compund 41367
Length = 990
Score = 26.9 bits (58), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
Query: 46 LQSLKSKGWVN-----EQFAWRHYYWYITNDGIEKLRGVLNIPDEIV 87
L LKSKGWVN ++ R + ++I N + + G+L++ D I+
Sbjct: 318 LSELKSKGWVNTLVGGQKEGARGFMFFIINVDLTE-EGLLHVEDIIL 363
>pdb|3TUV|A Chain A, Crystal Structure Of Insulysin With Bound Atp
Length = 1019
Score = 26.9 bits (58), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
Query: 46 LQSLKSKGWVN-----EQFAWRHYYWYITNDGIEKLRGVLNIPDEIV 87
L LKSKGWVN ++ R + ++I N + + G+L++ D I+
Sbjct: 347 LSELKSKGWVNTLVGGQKEGARGFMFFIINVDLTE-EGLLHVEDIIL 392
>pdb|3HGZ|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|3HGZ|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
Length = 969
Score = 26.9 bits (58), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
Query: 46 LQSLKSKGWVN-----EQFAWRHYYWYITNDGIEKLRGVLNIPDEIV 87
L LKSKGWVN ++ R + ++I N + + G+L++ D I+
Sbjct: 305 LSELKSKGWVNTLVGGQKEGARGFMFFIINVDLTE-EGLLHVEDIIL 350
>pdb|3P7O|A Chain A, Rat Insulin Degrading Enzyme (Insulysin) E111f Mutant With
Two Bound Peptides
Length = 1019
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
Query: 46 LQSLKSKGWVN-----EQFAWRHYYWYITNDGIEKLRGVLNIPDEIV 87
L LKSKGWVN ++ R + ++I N + + G+L++ D I+
Sbjct: 347 LSELKSKGWVNTLVGGQKEGARGFMFFIINVDLTE-EGLLHVEDIIL 392
>pdb|3E4A|A Chain A, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution
pdb|3E4A|B Chain B, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution
pdb|2WK3|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-42)
pdb|2WK3|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-42)
Length = 1019
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
Query: 46 LQSLKSKGWVN-----EQFAWRHYYWYITNDGIEKLRGVLNIPDEIV 87
L LKSKGWVN ++ R + ++I N + + G+L++ D I+
Sbjct: 347 LSELKSKGWVNTLVGGQKEGARGFMFFIINVDLTE-EGLLHVEDIIL 392
>pdb|2QIW|A Chain A, Crystal Structure Of A Putative Phosphoenolpyruvate
Phosphonomutase (ncgl1015, Cgl1060) From Corynebacterium
Glutamicum Atcc 13032 At 1.80 A Resolution
pdb|2QIW|B Chain B, Crystal Structure Of A Putative Phosphoenolpyruvate
Phosphonomutase (ncgl1015, Cgl1060) From Corynebacterium
Glutamicum Atcc 13032 At 1.80 A Resolution
Length = 255
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 89 STLKRQARTTDASKVPRQMTQRPDGGRGADD 119
ST ++ R DA VP +T P G GA D
Sbjct: 191 STAEQVERLVDAVSVPVNITAHPVDGHGAGD 221
>pdb|3P7L|A Chain A, Rat Insulin Degrading Enzyme (Insulysin)
Length = 978
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
Query: 46 LQSLKSKGWVN-----EQFAWRHYYWYITNDGIEKLRGVLNIPDEIV 87
L LKSKGWVN ++ R + ++I N + + G+L++ D I+
Sbjct: 306 LSELKSKGWVNTLVGGQKEGARGFMFFIINVDLTE-EGLLHVEDIIL 351
>pdb|4EV1|A Chain A, Anabaena Tic22 (Protein Transport)
Length = 252
Score = 26.2 bits (56), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 30 PKHPELDVPNLQVIKTLQSLKSKG--WVNE 57
PKHP+ D+ L + LQ+L+ K W+N+
Sbjct: 177 PKHPKADIQVLDIDGVLQTLQDKNDTWLNQ 206
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.137 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,449,794
Number of Sequences: 62578
Number of extensions: 231399
Number of successful extensions: 458
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 452
Number of HSP's gapped (non-prelim): 19
length of query: 159
length of database: 14,973,337
effective HSP length: 91
effective length of query: 68
effective length of database: 9,278,739
effective search space: 630954252
effective search space used: 630954252
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)