BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5978
(159 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q962R9|RS10_SPOFR 40S ribosomal protein S10 OS=Spodoptera frugiperda GN=RpS10 PE=2
SV=1
Length = 158
Score = 199 bits (506), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 102/163 (62%), Positives = 124/163 (76%), Gaps = 10/163 (6%)
Query: 1 MLMPKKNRYIIYEYLFKEGVLVAKKDFHAPKHPELD-VPNLQVIKTLQSLKSKGWVNEQF 59
MLMPK+NR IYEYLFKEGV+VAKKD+HAPKHP+L+ +PNLQVIK +QSLKS+G+V EQF
Sbjct: 1 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQF 60
Query: 60 AWRHYYWYITNDGIEKLRGVLNIPDEIVPSTLKRQARTTDASKVPRQMTQRPDG-GRGAD 118
AWRH+YWY+TN+GIE LR L++P EIVP+TLKR R A V R RPD R A+
Sbjct: 61 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVR---AETVRRGAVGRPDAPARSAE 117
Query: 119 DRMSYRKGPQ---GVDKKADVGAGSTEVEFKGYGGFGRGKAPP 158
DR +YR+ P DKKADVG GS ++EF+ GGFGRG+ P
Sbjct: 118 DRSAYRRAPTTPAAHDKKADVGPGSADLEFR--GGFGRGRPAP 158
>sp|Q9VWG3|RS10B_DROME 40S ribosomal protein S10b OS=Drosophila melanogaster GN=RpS10b
PE=1 SV=2
Length = 160
Score = 189 bits (480), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 99/161 (61%), Positives = 117/161 (72%), Gaps = 11/161 (6%)
Query: 1 MLMPKKNRYIIYEYLFKEGVLVAKKDFHAPKHPELD-VPNLQVIKTLQSLKSKGWVNEQF 59
M MPK +R IYEYLFKEGV+VAKKDFHA KHPEL+ +PNL VIK +QSL S+G V EQF
Sbjct: 1 MFMPKAHRVAIYEYLFKEGVIVAKKDFHAQKHPELESIPNLHVIKAMQSLHSRGLVKEQF 60
Query: 60 AWRHYYWYITNDGIEKLRGVLNIPDEIVPSTLKRQARTTDASKVPRQMTQRP----DGGR 115
AWRHYYWY+TN+GIE+LR L++P EIVPSTLKR AR+ PR P D +
Sbjct: 61 AWRHYYWYLTNEGIEELRSYLHLPPEIVPSTLKRPARSETVR--PRPAVGGPRGPGDASK 118
Query: 116 GADDRMSYRKGP--QGVDKKADVGAGSTEVEFKGYGGFGRG 154
+DR +YR+ P GVDKK DVG G+ EVEF+ GGFGRG
Sbjct: 119 TGEDRSAYRRAPGGSGVDKKGDVGPGAGEVEFR--GGFGRG 157
>sp|O77302|RS10_LUMRU 40S ribosomal protein S10 OS=Lumbricus rubellus GN=RPS10 PE=2 SV=1
Length = 156
Score = 185 bits (469), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 92/155 (59%), Positives = 113/155 (72%), Gaps = 4/155 (2%)
Query: 1 MLMPKKNRYIIYEYLFKEGVLVAKKDFHAPKHPELDVPNLQVIKTLQSLKSKGWVNEQFA 60
MLM KKNR +IYEYLFKEGVLVAKKDFH PKH E+DVPNL VI+ +QSL S+G+V EQF
Sbjct: 1 MLMSKKNRVMIYEYLFKEGVLVAKKDFHLPKHGEIDVPNLHVIRAMQSLVSRGYVKEQFC 60
Query: 61 WRHYYWYITNDGIEKLRGVLNIPDEIVPSTLKRQARTTDASKVPRQMTQRPDGGRGADDR 120
WRHYYWY+ N+GI+ LR L++P EIVP+TLKRQ R A P++ R G +DR
Sbjct: 61 WRHYYWYLQNEGIQYLRDFLHLPPEIVPATLKRQTRPEAARPRPKEGAPRAQVG---EDR 117
Query: 121 MSYRKGPQGVDKKADVGAGSTEVEFKGYGGFGRGK 155
YR+G G DKK + GAG+ + F+ GGFGRG+
Sbjct: 118 AGYRRGFGGSDKKGEAGAGA-DTNFQFRGGFGRGR 151
>sp|Q9VB14|RS10A_DROME 40S ribosomal protein S10a OS=Drosophila melanogaster GN=RpS10a
PE=2 SV=1
Length = 163
Score = 168 bits (426), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 89/160 (55%), Positives = 108/160 (67%), Gaps = 8/160 (5%)
Query: 1 MLMPKKNRYIIYEYLFKEGVLVAKKDFHAPKHPELD-VPNLQVIKTLQSLKSKGWVNEQF 59
M +PK NR IYEYLFKEGVLVAKKD KH ELD +PNLQVIK +QSL S+GWV EQF
Sbjct: 1 MFIPKANRVAIYEYLFKEGVLVAKKDSPIQKHSELDKIPNLQVIKVMQSLNSRGWVKEQF 60
Query: 60 AWRHYYWYITNDGIEKLRGVLNIPDEIVPSTLKRQARTTDA---SKVPRQMTQRPDGGRG 116
AWRH+YW +TN+GIE+LR L++P EIVPSTL + R+ +
Sbjct: 61 AWRHFYWLLTNEGIEELRRYLHLPPEIVPSTLTQTTRSNAVRPRGGPGGPGGGFGGASKT 120
Query: 117 ADDRMSYRKGP--QGVDKKADVGAGSTEVEFKGYGGFGRG 154
DDR +YR+GP G+DKK DVGAG+ VE++ GGFGR
Sbjct: 121 DDDRSNYRRGPGAYGMDKKGDVGAGTGRVEYR--GGFGRA 158
>sp|P63326|RS10_RAT 40S ribosomal protein S10 OS=Rattus norvegicus GN=Rps10 PE=2 SV=1
Length = 165
Score = 166 bits (419), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 90/165 (54%), Positives = 109/165 (66%), Gaps = 6/165 (3%)
Query: 1 MLMPKKNRYIIYEYLFKEGVLVAKKDFHAPKHPEL---DVPNLQVIKTLQSLKSKGWVNE 57
MLMPKKNR IYE LFKEGV+VAKKD H PKHPEL +VPNL V+K +QSLKS+G+V E
Sbjct: 1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60
Query: 58 QFAWRHYYWYITNDGIEKLRGVLNIPDEIVPSTLKRQARTTDASKVPRQMTQRPDG-GRG 116
QFAWRH+YWY+TN+GI+ LR L++P EIVP+TL+R T + +RP RG
Sbjct: 61 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGPEGERPARFTRG 120
Query: 117 ADDRMSYRKG--PQGVDKKADVGAGSTEVEFKGYGGFGRGKAPPQ 159
DR +YR+ P G DKKA+ GAGS G PPQ
Sbjct: 121 EADRDTYRRSAVPPGADKKAEAGAGSATEFQFRGGFGRGRGQPPQ 165
>sp|P63325|RS10_MOUSE 40S ribosomal protein S10 OS=Mus musculus GN=Rps10 PE=1 SV=1
Length = 165
Score = 166 bits (419), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 90/165 (54%), Positives = 109/165 (66%), Gaps = 6/165 (3%)
Query: 1 MLMPKKNRYIIYEYLFKEGVLVAKKDFHAPKHPEL---DVPNLQVIKTLQSLKSKGWVNE 57
MLMPKKNR IYE LFKEGV+VAKKD H PKHPEL +VPNL V+K +QSLKS+G+V E
Sbjct: 1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60
Query: 58 QFAWRHYYWYITNDGIEKLRGVLNIPDEIVPSTLKRQARTTDASKVPRQMTQRPDG-GRG 116
QFAWRH+YWY+TN+GI+ LR L++P EIVP+TL+R T + +RP RG
Sbjct: 61 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGPEGERPARFTRG 120
Query: 117 ADDRMSYRKG--PQGVDKKADVGAGSTEVEFKGYGGFGRGKAPPQ 159
DR +YR+ P G DKKA+ GAGS G PPQ
Sbjct: 121 EADRDTYRRSAVPPGADKKAEAGAGSATEFQFRGGFGRGRGQPPQ 165
>sp|P46783|RS10_HUMAN 40S ribosomal protein S10 OS=Homo sapiens GN=RPS10 PE=1 SV=1
Length = 165
Score = 166 bits (419), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 90/165 (54%), Positives = 109/165 (66%), Gaps = 6/165 (3%)
Query: 1 MLMPKKNRYIIYEYLFKEGVLVAKKDFHAPKHPEL---DVPNLQVIKTLQSLKSKGWVNE 57
MLMPKKNR IYE LFKEGV+VAKKD H PKHPEL +VPNL V+K +QSLKS+G+V E
Sbjct: 1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60
Query: 58 QFAWRHYYWYITNDGIEKLRGVLNIPDEIVPSTLKRQARTTDASKVPRQMTQRPDG-GRG 116
QFAWRH+YWY+TN+GI+ LR L++P EIVP+TL+R T + +RP RG
Sbjct: 61 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPARLTRG 120
Query: 117 ADDRMSYRKG--PQGVDKKADVGAGSTEVEFKGYGGFGRGKAPPQ 159
DR +YR+ P G DKKA+ GAGS G PPQ
Sbjct: 121 EADRDTYRRSAVPPGADKKAEAGAGSATEFQFRGGFGRGRGQPPQ 165
>sp|Q3T0F4|RS10_BOVIN 40S ribosomal protein S10 OS=Bos taurus GN=RPS10 PE=2 SV=1
Length = 165
Score = 166 bits (419), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 90/165 (54%), Positives = 109/165 (66%), Gaps = 6/165 (3%)
Query: 1 MLMPKKNRYIIYEYLFKEGVLVAKKDFHAPKHPEL---DVPNLQVIKTLQSLKSKGWVNE 57
MLMPKKNR IYE LFKEGV+VAKKD H PKHPEL +VPNL V+K +QSLKS+G+V E
Sbjct: 1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60
Query: 58 QFAWRHYYWYITNDGIEKLRGVLNIPDEIVPSTLKRQARTTDASKVPRQMTQRPDG-GRG 116
QFAWRH+YWY+TN+GI+ LR L++P EIVP+TL+R T + +RP RG
Sbjct: 61 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPARLTRG 120
Query: 117 ADDRMSYRKG--PQGVDKKADVGAGSTEVEFKGYGGFGRGKAPPQ 159
DR +YR+ P G DKKA+ GAGS G PPQ
Sbjct: 121 EADRDTYRRSAVPPGADKKAEAGAGSATEFQFRGGFGRGRGQPPQ 165
>sp|Q9NQ39|RS10L_HUMAN Putative 40S ribosomal protein S10-like OS=Homo sapiens GN=RPS10P5
PE=5 SV=1
Length = 176
Score = 156 bits (394), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 87/163 (53%), Positives = 105/163 (64%), Gaps = 18/163 (11%)
Query: 1 MLMPKKNRYIIYEYLFKEGVLVAKKDFHAPKHPEL---DVPNLQVIKTLQSLKSKGWVNE 57
MLMPKKNR I+E LFKEGV+VAKKD H PKHPEL +VPNL V+K +QSLKS+G V E
Sbjct: 1 MLMPKKNRIAIHELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGCVKE 60
Query: 58 QFAWRHYYWYITNDGIEKLRGVLNIPDEIVPSTLKRQARTTDAS---KVPRQMTQRPDGG 114
QFAWRH+YWY+TN+G + LR L++P EIVP+TL A+ P RP G
Sbjct: 61 QFAWRHFYWYLTNEGSQYLRDYLHLPPEIVPATLHLPPEIVPATLHRSRPETGRPRPKGL 120
Query: 115 RG---------ADDRMSYRKG--PQGVDKKADVGAGS-TEVEF 145
G DR +YR+ P G DKKA+ GAGS TE +F
Sbjct: 121 EGKRPARLTRREADRDTYRRCSVPPGADKKAEAGAGSATEFQF 163
>sp|Q90YR4|RS10_ICTPU 40S ribosomal protein S10 OS=Ictalurus punctatus GN=rps10 PE=2 SV=1
Length = 166
Score = 155 bits (393), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 81/138 (58%), Positives = 99/138 (71%), Gaps = 7/138 (5%)
Query: 1 MLMPKKNRYIIYEYLFKEGVLVAKKDFHAPKHPEL---DVPNLQVIKTLQSLKSKGWVNE 57
MLMPKKNR IYE LFKEGV+VAKKD H KHPEL +VPNL V+K +QSLKS G+V E
Sbjct: 1 MLMPKKNRIAIYELLFKEGVMVAKKDVHLAKHPELADKNVPNLHVMKAMQSLKSCGYVKE 60
Query: 58 QFAWRHYYWYITNDGIEKLRGVLNIPDEIVPSTLKRQARTTDASKVPRQMT-QRPDG-GR 115
QFAWRH+YWY+TN+GI+ LR L++P EIVP+TL+RQ R A P+ + +RP R
Sbjct: 61 QFAWRHFYWYLTNEGIQYLRDFLHLPPEIVPATLRRQTRPETARPRPKGLEGERPARLAR 120
Query: 116 GADDRMSYRK--GPQGVD 131
G DR +YR+ P G D
Sbjct: 121 GEGDRDAYRRSAAPPGAD 138
>sp|Q07254|RS10_XENLA 40S ribosomal protein S10 OS=Xenopus laevis GN=rps10 PE=1 SV=1
Length = 165
Score = 150 bits (379), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 78/137 (56%), Positives = 97/137 (70%), Gaps = 6/137 (4%)
Query: 1 MLMPKKNRYIIYEYLFKEGVLVAKKDFHAPKHPEL---DVPNLQVIKTLQSLKSKGWVNE 57
MLMPKK+R IYE LFKEGV+VAKKD H PKHPEL +VPNL V+K +QSLKS+G+V E
Sbjct: 1 MLMPKKDRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60
Query: 58 QFAWRHYYWYITNDGIEKLRGVLNIPDEIVPSTLKRQARTTDASKVPRQMTQRPDG-GRG 116
QFAWRH+YWY+TN+GI+ LR L++P EIVP+TL+R T + +RP RG
Sbjct: 61 QFAWRHFYWYLTNEGIQYLRDFLHLPPEIVPATLRRSRPETGRPRPKGLEGERPPRLPRG 120
Query: 117 ADDRMSYRKG--PQGVD 131
DR +YR+ P G D
Sbjct: 121 ETDRDTYRRSAVPSGAD 137
>sp|Q9SW09|RS101_ARATH 40S ribosomal protein S10-1 OS=Arabidopsis thaliana GN=RPS10A PE=2
SV=1
Length = 177
Score = 140 bits (354), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/148 (50%), Positives = 93/148 (62%), Gaps = 14/148 (9%)
Query: 1 MLMPKKNRYIIYEYLFKEGVLVAKKDFHAPKHPELDVPNLQVIKTLQSLKSKGWVNEQFA 60
M++ + NR I +YLFKEGV AKKDF+ PKHP +DVPNLQVIK +QS KSK +V E FA
Sbjct: 1 MIISENNRREICKYLFKEGVCFAKKDFNLPKHPLIDVPNLQVIKLMQSFKSKEYVRETFA 60
Query: 61 WRHYYWYITNDGIEKLRGVLNIPDEIVPSTLKRQARTTDASKV----------PRQMTQR 110
W HYYW++TN+GIE LR LN+P ++VP+TLK+ A+ PR R
Sbjct: 61 WMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRQRGPPRSDGDR 120
Query: 111 PDGGRGADDRMSYRKGPQGVDKKADVGA 138
P G DR YR GP+G D+K A
Sbjct: 121 PRFG----DRDGYRGGPRGGDEKGGAPA 144
>sp|Q9AYP4|RS10_ORYSJ 40S ribosomal protein S10 OS=Oryza sativa subsp. japonica GN=RPS10
PE=2 SV=2
Length = 183
Score = 140 bits (354), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 76/153 (49%), Positives = 98/153 (64%), Gaps = 7/153 (4%)
Query: 1 MLMPKKNRYIIYEYLFKEGVLVAKKDFHAPKHPELDVPNLQVIKTLQSLKSKGWVNEQFA 60
M++PKKNR I +YLF+EGVL AKKD++ KHP++DVPNLQVIK +QS KSK +V E F+
Sbjct: 1 MIIPKKNRNEICKYLFQEGVLYAKKDYNLAKHPQIDVPNLQVIKLMQSFKSKEYVRETFS 60
Query: 61 WRHYYWYITNDGIEKLRGVLNIPDEIVPSTLKRQART------TDASKVPRQMTQRPDGG 114
W++YYWY+TNDGIE LR LN+P EIVP+TLK+ AR + + R +G
Sbjct: 61 WQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSARPPGRPFGSGPPGDRPRGPPRFEGD 120
Query: 115 RG-ADDRMSYRKGPQGVDKKADVGAGSTEVEFK 146
R DR YR GP+G G EF+
Sbjct: 121 RPRFGDRDGYRGGPRGAPGDFGGEKGGAPAEFQ 153
>sp|Q9LTF2|RS103_ARATH 40S ribosomal protein S10-3 OS=Arabidopsis thaliana GN=RPS10C PE=2
SV=2
Length = 179
Score = 134 bits (337), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/139 (51%), Positives = 91/139 (65%), Gaps = 14/139 (10%)
Query: 1 MLMPKKNRYIIYEYLFKEGVLVAKKDFHAPKHPELDVPNLQVIKTLQSLKSKGWVNEQFA 60
M++ + NR I +YLFKEGV AKKDF+ KHP +DVPNLQVIK +QS KSK +V E FA
Sbjct: 1 MIISEANRKEICKYLFKEGVCFAKKDFNLAKHPLIDVPNLQVIKLMQSFKSKEYVRETFA 60
Query: 61 WRHYYWYITNDGIEKLRGVLNIPDEIVPSTLKRQAR---------TTDASKVPR-QMTQR 110
W HYYW++TN+GIE LR LN+P ++VP+TLK+ A+ D S+ PR + R
Sbjct: 61 WMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRSRGPRHEGGDR 120
Query: 111 PDGGRGADDRMSYRKGPQG 129
P G DR YR GP+
Sbjct: 121 PRFG----DRDGYRAGPRA 135
>sp|O14112|RS10A_SCHPO 40S ribosomal protein S10-A OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rps10a PE=3 SV=1
Length = 144
Score = 129 bits (323), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 71/153 (46%), Positives = 96/153 (62%), Gaps = 11/153 (7%)
Query: 1 MLMPKKNRYIIYEYLFKEGVLVAKKDFHAPKHPELDVPNLQVIKTLQSLKSKGWVNEQFA 60
ML+PK+NR I++ LF +GVLVAKKDF+ PKHPE+ VPNLQVIK QSL S+G++ ++
Sbjct: 1 MLIPKENRKAIHQALFSQGVLVAKKDFNLPKHPEVGVPNLQVIKACQSLDSRGYLKTRYN 60
Query: 61 WRHYYWYITNDGIEKLRGVLNIPDEIVPSTLKRQARTTDASKVPRQMTQRPDGGRGADDR 120
W +Y+ +TN+G+E LR L++P E+VP+T KRQ R T PR RP+ A
Sbjct: 61 WGWFYYTLTNEGVEYLREYLHLPAEVVPATHKRQVRPT----APR--AGRPEPRERASAD 114
Query: 121 MSYRKGPQGVDKKADVGAGSTEVEFKGYGGFGR 153
YR+ +K D GA + GGFGR
Sbjct: 115 AGYRRA-----EKKDEGAAPSGFAPSFRGGFGR 142
>sp|Q9FFS8|RS102_ARATH 40S ribosomal protein S10-2 OS=Arabidopsis thaliana GN=RPS10B
PE=2 SV=1
Length = 180
Score = 125 bits (315), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 59/97 (60%), Positives = 77/97 (79%), Gaps = 1/97 (1%)
Query: 1 MLMPKKNRYIIYEYLFKEGVLVAKKDFHAPKHPELD-VPNLQVIKTLQSLKSKGWVNEQF 59
M++ + NR I +YLFKEGVL AKKDF+ P+HP ++ VPNLQVIK +QS KSK +V E F
Sbjct: 1 MIISETNRREISKYLFKEGVLFAKKDFNLPQHPLIESVPNLQVIKLMQSFKSKEYVRETF 60
Query: 60 AWRHYYWYITNDGIEKLRGVLNIPDEIVPSTLKRQAR 96
AW HYYW++TN+GI+ LR LN+P EIVP+TLK+Q +
Sbjct: 61 AWMHYYWFLTNEGIDFLRTYLNLPSEIVPATLKKQQK 97
>sp|O13614|RS10B_SCHPO 40S ribosomal protein S10-B OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rps10b PE=3 SV=1
Length = 147
Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 70/153 (45%), Positives = 94/153 (61%), Gaps = 10/153 (6%)
Query: 1 MLMPKKNRYIIYEYLFKEGVLVAKKDFHAPKHPELDVPNLQVIKTLQSLKSKGWVNEQFA 60
ML+PK+NR I++ LF++GVLVAKKDF+ PKHPE+ VPNLQVIK QSL S+G++ ++
Sbjct: 1 MLIPKENRKAIHQALFQQGVLVAKKDFNLPKHPEVGVPNLQVIKACQSLDSRGYLKTRYN 60
Query: 61 WRHYYWYITNDGIEKLRGVLNIPDEIVPSTLKRQARTTDASKVPRQMTQRPDGGRGADDR 120
W +Y+ +TN+G+E LR L++P E+VP+T KRQ R PR P A D
Sbjct: 61 WGWFYYTLTNEGVEYLREYLHLPAEVVPATHKRQVRPA----APRAGRPEPRERSSAAD- 115
Query: 121 MSYRKGPQGVDKKADVGAGSTEVEFKGYGGFGR 153
YR+ +K D GA GGFGR
Sbjct: 116 AGYRRA-----EKKDDGAAPGGFAPSFRGGFGR 143
>sp|Q08745|RS10A_YEAST 40S ribosomal protein S10-A OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPS10A PE=1 SV=1
Length = 105
Score = 116 bits (290), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 58/111 (52%), Positives = 78/111 (70%), Gaps = 10/111 (9%)
Query: 1 MLMPKKNRYIIYEYLFKEGVLVAKKDFHAPKHPELDVPNLQVIKTLQSLKSKGWVNEQFA 60
MLMPK++R I++YLF+EGV+VAKKDF+ KH E+D NL VIK LQSL SKG+V QF+
Sbjct: 1 MLMPKEDRNKIHQYLFQEGVVVAKKDFNQAKHEEIDTKNLYVIKALQSLTSKGYVKTQFS 60
Query: 61 WRHYYWYITNDGIEKLRGVLNIPDEIVPSTLKRQARTTDASKVPRQMTQRP 111
W++YY+ +T +G+E LR LN+P+ IVP T ++ R TQRP
Sbjct: 61 WQYYYYTLTEEGVEYLREYLNLPEHIVPGTYIQE----------RNPTQRP 101
>sp|P46784|RS10B_YEAST 40S ribosomal protein S10-B OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPS10B PE=1 SV=1
Length = 105
Score = 116 bits (290), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 53/90 (58%), Positives = 70/90 (77%)
Query: 1 MLMPKKNRYIIYEYLFKEGVLVAKKDFHAPKHPELDVPNLQVIKTLQSLKSKGWVNEQFA 60
MLMPK+ R I++YLF+EGV+VAKKDF+ KH E+D NL VIK LQSL SKG+V QF+
Sbjct: 1 MLMPKQERNKIHQYLFQEGVVVAKKDFNQAKHEEIDTKNLYVIKALQSLTSKGYVKTQFS 60
Query: 61 WRHYYWYITNDGIEKLRGVLNIPDEIVPST 90
W++YY+ +T +G+E LR LN+P+ IVP T
Sbjct: 61 WQYYYYTLTEEGVEYLREYLNLPEHIVPGT 90
>sp|O77082|RS10_DICDI 40S ribosomal protein S10 OS=Dictyostelium discoideum GN=rps10
PE=1 SV=3
Length = 154
Score = 112 bits (281), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 49/95 (51%), Positives = 72/95 (75%), Gaps = 1/95 (1%)
Query: 2 LMPKKNRYIIYEYLFKEGVLVAKKDFHAPKHPELD-VPNLQVIKTLQSLKSKGWVNEQFA 60
L+P +N+ IY YLF+EGVLVA KDFH KHP+++ V NL V++ L+S KS+ +V E F
Sbjct: 3 LIPTENKLAIYRYLFQEGVLVAPKDFHLAKHPQIETVSNLDVLQILRSFKSRKFVTETFN 62
Query: 61 WRHYYWYITNDGIEKLRGVLNIPDEIVPSTLKRQA 95
W++YYW +T +GI+ LR L +P+ +VP+T+K+QA
Sbjct: 63 WQYYYWVLTEEGIKYLRTYLQVPESVVPATMKKQA 97
>sp|P30427|PLEC_RAT Plectin OS=Rattus norvegicus GN=Plec PE=1 SV=2
Length = 4687
Score = 102 bits (253), Expect = 1e-21, Method: Composition-based stats.
Identities = 53/99 (53%), Positives = 71/99 (71%), Gaps = 4/99 (4%)
Query: 1 MLMPKKNRYIIYEYLFKEGVLVAKKDFHAPK--HPEL-DVPNLQVIKTLQSLKSKGWVNE 57
MLMP IYE LF+EGV+VAKKD P+ HP + V NLQV++ + SLK++G V E
Sbjct: 5 MLMPLDQLRAIYEVLFREGVMVAKKD-RRPRSLHPHVPGVTNLQVMRAMTSLKARGLVRE 63
Query: 58 QFAWRHYYWYITNDGIEKLRGVLNIPDEIVPSTLKRQAR 96
FAW H+YWY+TN+GI+ LR L++P EIVP++L+R R
Sbjct: 64 TFAWCHFYWYLTNEGIDHLRQYLHLPPEIVPASLQRVRR 102
>sp|Q15149|PLEC_HUMAN Plectin OS=Homo sapiens GN=PLEC PE=1 SV=3
Length = 4684
Score = 102 bits (253), Expect = 1e-21, Method: Composition-based stats.
Identities = 66/157 (42%), Positives = 92/157 (58%), Gaps = 16/157 (10%)
Query: 1 MLMPKKNRYIIYEYLFKEGVLVAKKDFHAPK--HPEL-DVPNLQVIKTLQSLKSKGWVNE 57
MLMP+ IYE LF+EGV+VAKKD P+ HP + V NLQV++ + SL+++G V E
Sbjct: 5 MLMPRDQLRAIYEVLFREGVMVAKKD-RRPRSLHPHVPGVTNLQVMRAMASLRARGLVRE 63
Query: 58 QFAWRHYYWYITNDGIEKLRGVLNIPDEIVPSTLKRQAR----TTDASKVPR-QMTQRPD 112
FAW H+YWY+TN+GI LR L++P EIVP++L+R R A + P Q Q P
Sbjct: 64 TFAWCHFYWYLTNEGIAHLRQYLHLPPEIVPASLQRVRRPVAMVMPARRTPHVQAVQGPL 123
Query: 113 GG---RGA----DDRMSYRKGPQGVDKKADVGAGSTE 142
G RG + R+ RK + V + V +T+
Sbjct: 124 GSPPKRGPLPTEEQRVYRRKELEEVSPETPVVPATTQ 160
>sp|Q9QXS1|PLEC_MOUSE Plectin OS=Mus musculus GN=Plec PE=1 SV=2
Length = 4691
Score = 101 bits (252), Expect = 2e-21, Method: Composition-based stats.
Identities = 53/99 (53%), Positives = 71/99 (71%), Gaps = 4/99 (4%)
Query: 1 MLMPKKNRYIIYEYLFKEGVLVAKKDFHAPK--HPEL-DVPNLQVIKTLQSLKSKGWVNE 57
MLMP IYE LF+EGV+VAKKD P+ HP + V NLQV++ + SLK++G V E
Sbjct: 5 MLMPLDRLRAIYEVLFREGVMVAKKD-RRPRSLHPHVPGVTNLQVMRAMASLKARGLVRE 63
Query: 58 QFAWRHYYWYITNDGIEKLRGVLNIPDEIVPSTLKRQAR 96
FAW H+YWY+TN+GI+ LR L++P EIVP++L+R R
Sbjct: 64 TFAWCHFYWYLTNEGIDHLRQYLHLPPEIVPASLQRVRR 102
>sp|O43639|NCK2_HUMAN Cytoplasmic protein NCK2 OS=Homo sapiens GN=NCK2 PE=1 SV=2
Length = 380
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 7/109 (6%)
Query: 15 LFKEGVLVAKKDFHAPKHPELDVPNLQVIKTLQSLKSKGWVNEQFAWRHYYWYITN---- 70
+ +E +++AK D+ A + ELD+ + + L SK W + A + +N
Sbjct: 1 MTEEVIVIAKWDYTAQQDQELDIKKNERLWLLDD--SKTWWRVRNAANRTGYVPSNYVER 58
Query: 71 -DGIEKLRGVLNIPDEIVPSTLKRQARTTDASKVPRQMTQRPDGGRGAD 118
+ ++K V N+ D + +R+ DAS P + P G GAD
Sbjct: 59 KNSLKKGSLVKNLKDTLGLGKTRRKTSARDASPTPSTDAEYPANGSGAD 107
>sp|O55033|NCK2_MOUSE Cytoplasmic protein NCK2 OS=Mus musculus GN=Nck2 PE=1 SV=1
Length = 380
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 7/109 (6%)
Query: 15 LFKEGVLVAKKDFHAPKHPELDVPNLQVIKTLQSLKSKGWVNEQFAWRHYYWYITN---- 70
+ +E +++AK D+ A + ELD+ + + L SK W + A + +N
Sbjct: 1 MTEEVIVIAKWDYTAQQDQELDIRKNERLWLLDD--SKTWWRVRNAANRTGYVPSNYVER 58
Query: 71 -DGIEKLRGVLNIPDEIVPSTLKRQARTTDASKVPRQMTQRPDGGRGAD 118
+ ++K V N+ D + +R+ DAS P + P G GAD
Sbjct: 59 KNSLKKGSLVKNLKDTLGLGKTRRKPSARDASPTPSTDAEYPANGSGAD 107
>sp|Q5SPW0|VPS54_MOUSE Vacuolar protein sorting-associated protein 54 OS=Mus musculus
GN=Vps54 PE=1 SV=1
Length = 977
Score = 30.0 bits (66), Expect = 6.6, Method: Composition-based stats.
Identities = 12/46 (26%), Positives = 25/46 (54%)
Query: 73 IEKLRGVLNIPDEIVPSTLKRQARTTDASKVPRQMTQRPDGGRGAD 118
+++++ LNI +V S L++ RT + ++P+Q + D D
Sbjct: 462 LQRVKATLNIIHSVVLSVLEKSQRTRELEEIPQQRSAGKDSSLDTD 507
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.137 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,017,854
Number of Sequences: 539616
Number of extensions: 2878736
Number of successful extensions: 5833
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 5752
Number of HSP's gapped (non-prelim): 37
length of query: 159
length of database: 191,569,459
effective HSP length: 108
effective length of query: 51
effective length of database: 133,290,931
effective search space: 6797837481
effective search space used: 6797837481
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)