Query psy5978
Match_columns 159
No_of_seqs 134 out of 245
Neff 3.8
Searched_HMMs 29240
Date Fri Aug 16 23:27:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5978.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5978hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xzm_7 Plectin/S10 domain cont 100.0 1.5E-68 5.1E-73 426.3 9.2 120 1-125 1-124 (162)
2 3u5c_K 40S ribosomal protein S 100.0 7.4E-66 2.5E-70 387.6 7.7 102 1-103 1-102 (105)
3 1ub9_A Hypothetical protein PH 96.3 0.0015 5.1E-08 43.9 1.9 72 4-80 14-88 (100)
4 3f6o_A Probable transcriptiona 96.2 0.0037 1.3E-07 44.7 3.5 73 3-81 15-87 (118)
5 3cuo_A Uncharacterized HTH-typ 96.2 0.0023 7.9E-08 43.0 2.2 72 4-80 22-93 (99)
6 2oqg_A Possible transcriptiona 95.9 0.0032 1.1E-07 43.5 1.9 71 4-80 19-89 (114)
7 3f6v_A Possible transcriptiona 95.8 0.0051 1.7E-07 46.7 3.0 72 4-81 56-127 (151)
8 1tbx_A ORF F-93, hypothetical 95.7 0.011 3.7E-07 40.3 3.9 45 35-79 36-80 (99)
9 3jth_A Transcription activator 95.5 0.0079 2.7E-07 41.0 2.7 72 3-80 20-91 (98)
10 2kko_A Possible transcriptiona 94.8 0.016 5.6E-07 40.8 2.8 71 4-80 23-93 (108)
11 2qvo_A Uncharacterized protein 94.7 0.031 1.1E-06 38.2 3.8 45 35-79 40-84 (95)
12 1xmk_A Double-stranded RNA-spe 94.5 0.0073 2.5E-07 42.4 0.2 65 6-76 11-76 (79)
13 3pqk_A Biofilm growth-associat 94.4 0.022 7.6E-07 39.1 2.5 72 3-80 20-91 (102)
14 2zkz_A Transcriptional repress 93.8 0.036 1.2E-06 38.5 2.7 72 4-81 25-96 (99)
15 2jsc_A Transcriptional regulat 93.7 0.094 3.2E-06 37.4 4.8 73 4-82 19-92 (118)
16 1u2w_A CADC repressor, cadmium 93.6 0.023 7.8E-07 40.9 1.4 69 5-78 41-109 (122)
17 2bv6_A MGRA, HTH-type transcri 93.4 0.058 2E-06 37.9 3.2 68 8-80 39-109 (142)
18 2gxg_A 146AA long hypothetical 92.9 0.084 2.9E-06 37.0 3.4 44 36-79 61-107 (146)
19 2nnn_A Probable transcriptiona 92.8 0.095 3.3E-06 36.3 3.6 45 35-79 62-109 (140)
20 2fbi_A Probable transcriptiona 92.8 0.096 3.3E-06 36.4 3.6 66 9-79 39-107 (142)
21 3df8_A Possible HXLR family tr 92.7 0.085 2.9E-06 37.5 3.3 69 3-77 24-94 (111)
22 2hgc_A YJCQ protein; SR346, st 92.6 0.055 1.9E-06 40.0 2.2 64 7-78 6-75 (102)
23 1r1u_A CZRA, repressor protein 92.5 0.11 3.8E-06 36.1 3.6 69 4-78 24-93 (106)
24 3bdd_A Regulatory protein MARR 92.3 0.087 3E-06 36.6 2.8 41 36-76 56-99 (142)
25 3tgn_A ADC operon repressor AD 92.2 0.065 2.2E-06 37.7 2.0 67 8-80 40-109 (146)
26 3b73_A PHIH1 repressor-like pr 92.1 0.066 2.2E-06 39.3 2.1 70 6-81 13-82 (111)
27 1r7j_A Conserved hypothetical 91.9 0.085 2.9E-06 37.2 2.4 40 36-79 31-70 (95)
28 2esh_A Conserved hypothetical 91.9 0.13 4.5E-06 36.8 3.4 46 37-82 46-96 (118)
29 2eth_A Transcriptional regulat 91.9 0.13 4.5E-06 36.9 3.4 44 36-79 69-115 (154)
30 3oop_A LIN2960 protein; protei 91.7 0.1 3.5E-06 36.7 2.7 44 36-79 62-108 (143)
31 2hr3_A Probable transcriptiona 91.7 0.12 4.2E-06 36.3 3.1 44 36-79 61-107 (147)
32 2hzt_A Putative HTH-type trans 91.6 0.15 5E-06 35.7 3.3 69 3-77 11-83 (107)
33 1z7u_A Hypothetical protein EF 91.6 0.16 5.6E-06 35.7 3.6 70 3-78 19-92 (112)
34 2rdp_A Putative transcriptiona 91.6 0.13 4.6E-06 36.2 3.2 45 36-80 67-114 (150)
35 3bja_A Transcriptional regulat 91.2 0.16 5.3E-06 35.2 3.1 67 8-79 35-104 (139)
36 2a61_A Transcriptional regulat 91.2 0.16 5.5E-06 35.4 3.3 44 36-79 58-104 (145)
37 3l7w_A Putative uncharacterize 91.1 0.23 7.8E-06 35.0 4.0 47 35-81 36-86 (108)
38 3bpv_A Transcriptional regulat 91.1 0.12 4.2E-06 35.7 2.5 44 36-79 54-100 (138)
39 2qww_A Transcriptional regulat 90.9 0.12 4.1E-06 36.7 2.3 46 36-81 66-116 (154)
40 1q1h_A TFE, transcription fact 90.7 0.045 1.6E-06 38.0 -0.0 64 6-73 18-87 (110)
41 3eco_A MEPR; mutlidrug efflux 90.7 0.19 6.4E-06 35.1 3.2 44 36-79 58-104 (139)
42 1jgs_A Multiple antibiotic res 90.7 0.19 6.5E-06 34.9 3.2 45 36-80 59-106 (138)
43 3f8b_A Transcriptional regulat 90.6 0.3 1E-05 35.1 4.3 47 35-81 43-94 (116)
44 1lj9_A Transcriptional regulat 90.6 0.19 6.6E-06 35.1 3.2 44 36-79 54-100 (144)
45 2dql_A PEX protein; circadian 90.6 0.26 9E-06 35.5 4.0 46 35-80 52-103 (115)
46 1xma_A Predicted transcription 90.4 0.3 1E-05 36.7 4.2 46 36-81 73-123 (145)
47 3elk_A Putative transcriptiona 90.3 0.22 7.5E-06 36.1 3.4 46 37-82 45-95 (117)
48 2fbh_A Transcriptional regulat 90.3 0.18 6.3E-06 35.1 2.9 44 36-79 63-109 (146)
49 3cjn_A Transcriptional regulat 90.1 0.22 7.4E-06 35.8 3.1 66 9-79 55-123 (162)
50 2pg4_A Uncharacterized protein 89.7 0.18 6.3E-06 34.1 2.4 44 36-79 41-86 (95)
51 2co5_A Viral protein F93; vira 89.6 0.21 7.1E-06 35.7 2.7 47 36-82 41-87 (99)
52 3bro_A Transcriptional regulat 89.5 0.17 5.9E-06 35.1 2.2 44 36-79 61-107 (141)
53 1z91_A Organic hydroperoxide r 89.5 0.14 4.8E-06 36.0 1.7 67 8-79 42-111 (147)
54 2pex_A Transcriptional regulat 89.3 0.2 6.7E-06 35.6 2.4 44 36-79 72-118 (153)
55 3cdh_A Transcriptional regulat 89.2 0.21 7.1E-06 35.6 2.5 44 36-79 68-114 (155)
56 3hsr_A HTH-type transcriptiona 89.1 0.2 7E-06 35.3 2.4 44 36-79 61-107 (140)
57 2fa5_A Transcriptional regulat 89.1 0.15 5E-06 36.6 1.6 44 36-79 74-120 (162)
58 1s3j_A YUSO protein; structura 89.1 0.28 9.5E-06 34.7 3.0 45 35-79 61-108 (155)
59 3g3z_A NMB1585, transcriptiona 89.0 0.18 6.1E-06 35.5 2.0 44 36-79 56-102 (145)
60 2nyx_A Probable transcriptiona 89.0 0.29 1E-05 35.8 3.2 44 36-79 70-116 (168)
61 4esf_A PADR-like transcription 88.9 0.34 1.1E-05 35.1 3.4 48 36-83 41-93 (117)
62 3s2w_A Transcriptional regulat 88.8 0.31 1.1E-05 35.0 3.2 44 36-79 75-121 (159)
63 3u2r_A Regulatory protein MARR 88.8 0.39 1.3E-05 34.9 3.7 45 36-80 73-120 (168)
64 3bj6_A Transcriptional regulat 88.8 0.25 8.4E-06 34.9 2.6 44 36-79 65-111 (152)
65 3deu_A Transcriptional regulat 88.8 0.27 9.3E-06 36.2 2.9 44 36-79 79-125 (166)
66 3hhh_A Transcriptional regulat 88.6 0.39 1.3E-05 34.8 3.6 46 36-81 43-93 (116)
67 3boq_A Transcriptional regulat 88.6 0.19 6.4E-06 35.9 1.9 44 36-79 73-119 (160)
68 3f3x_A Transcriptional regulat 88.6 0.35 1.2E-05 34.0 3.2 44 36-79 61-107 (144)
69 1sfx_A Conserved hypothetical 88.5 0.4 1.4E-05 31.6 3.4 69 6-79 20-90 (109)
70 1yg2_A Gene activator APHA; vi 88.3 0.25 8.6E-06 37.5 2.5 50 36-85 34-88 (179)
71 3e6m_A MARR family transcripti 88.2 0.31 1.1E-05 35.2 2.9 46 35-80 77-125 (161)
72 3l4g_A Phenylalanyl-tRNA synth 87.5 0.11 3.7E-06 47.4 0.0 49 36-87 31-80 (508)
73 1okr_A MECI, methicillin resis 87.5 0.35 1.2E-05 33.4 2.7 70 8-78 12-82 (123)
74 4hbl_A Transcriptional regulat 87.4 0.29 1E-05 34.9 2.3 45 36-80 66-113 (149)
75 3k0l_A Repressor protein; heli 87.2 0.39 1.3E-05 34.7 2.9 45 36-80 71-118 (162)
76 2frh_A SARA, staphylococcal ac 87.2 0.28 9.4E-06 34.8 2.0 44 36-79 64-110 (127)
77 3u1d_A Uncharacterized protein 87.0 0.4 1.4E-05 37.3 3.0 76 3-83 26-112 (151)
78 4esb_A Transcriptional regulat 86.9 0.53 1.8E-05 33.9 3.4 48 35-82 38-90 (115)
79 1yyv_A Putative transcriptiona 86.6 0.55 1.9E-05 34.4 3.4 68 5-78 34-105 (131)
80 3jw4_A Transcriptional regulat 86.3 0.22 7.5E-06 35.3 1.1 44 36-79 68-114 (148)
81 2e1n_A PEX, period extender; c 86.3 0.46 1.6E-05 35.7 2.9 47 35-81 64-116 (138)
82 1on2_A Transcriptional regulat 86.3 0.38 1.3E-05 34.2 2.3 41 35-78 32-72 (142)
83 3ech_A MEXR, multidrug resista 86.2 0.24 8.1E-06 34.9 1.2 44 36-79 62-108 (142)
84 3nrv_A Putative transcriptiona 85.7 0.32 1.1E-05 34.2 1.7 45 36-80 65-112 (148)
85 3kp7_A Transcriptional regulat 85.6 0.32 1.1E-05 34.6 1.7 44 36-79 62-110 (151)
86 2d1h_A ST1889, 109AA long hypo 85.5 0.72 2.5E-05 30.5 3.3 46 35-80 46-97 (109)
87 2x4h_A Hypothetical protein SS 85.3 0.45 1.5E-05 33.6 2.3 40 36-79 42-81 (139)
88 2fsw_A PG_0823 protein; alpha- 85.2 0.58 2E-05 32.5 2.8 68 4-77 23-94 (107)
89 3ri2_A Transcriptional regulat 84.7 0.76 2.6E-05 33.7 3.4 46 35-80 48-97 (123)
90 1r1t_A Transcriptional repress 84.2 0.88 3E-05 32.7 3.5 68 5-78 45-113 (122)
91 1y0u_A Arsenical resistance op 84.2 0.15 5E-06 34.7 -0.7 59 4-73 29-87 (96)
92 3fm5_A Transcriptional regulat 84.1 0.5 1.7E-05 33.5 2.1 44 36-79 65-111 (150)
93 2fxa_A Protease production reg 84.0 0.65 2.2E-05 35.9 2.8 46 36-81 73-121 (207)
94 2htj_A P fimbrial regulatory p 83.2 0.13 4.4E-06 34.2 -1.3 61 8-73 2-64 (81)
95 3nqo_A MARR-family transcripti 82.4 0.94 3.2E-05 34.0 3.2 45 36-80 68-115 (189)
96 4aik_A Transcriptional regulat 82.0 1.2 4E-05 32.6 3.5 44 36-79 57-103 (151)
97 2qlz_A Transcription factor PF 80.8 1.1 3.6E-05 36.5 3.1 66 4-75 10-81 (232)
98 3aaf_A Werner syndrome ATP-dep 80.7 1.3 4.5E-05 33.0 3.4 50 37-86 65-116 (134)
99 4b8x_A SCO5413, possible MARR- 80.4 1.3 4.4E-05 32.0 3.1 44 36-79 62-108 (147)
100 2zfw_A PEX; five alpha-helices 79.3 0.56 1.9E-05 35.8 0.9 47 35-81 74-126 (148)
101 3l9f_A Putative uncharacterize 79.0 1.4 4.7E-05 35.1 3.2 50 36-85 68-122 (204)
102 2qq9_A Diphtheria toxin repres 77.6 0.98 3.3E-05 35.5 1.9 48 35-85 34-95 (226)
103 2fbk_A Transcriptional regulat 77.4 0.45 1.5E-05 35.2 -0.1 44 36-79 97-143 (181)
104 3hrs_A Metalloregulator SCAR; 76.6 1.3 4.3E-05 34.7 2.3 50 35-87 30-93 (214)
105 2lkp_A Transcriptional regulat 74.9 2.5 8.5E-05 29.2 3.2 70 5-80 31-101 (119)
106 2f2e_A PA1607; transcription f 74.2 1.5 5.1E-05 32.4 2.0 66 4-75 22-89 (146)
107 2wte_A CSA3; antiviral protein 72.1 1.8 6.3E-05 35.1 2.2 70 7-83 153-222 (244)
108 4a5n_A Uncharacterized HTH-typ 69.4 3.5 0.00012 30.6 3.1 68 4-77 24-95 (131)
109 1fx7_A Iron-dependent represso 68.3 2 6.9E-05 33.6 1.6 39 36-77 35-73 (230)
110 2h09_A Transcriptional regulat 66.6 3.2 0.00011 29.8 2.3 41 36-79 65-105 (155)
111 3cta_A Riboflavin kinase; stru 63.2 5.8 0.0002 30.7 3.4 74 6-79 7-81 (230)
112 4fx0_A Probable transcriptiona 61.3 3.2 0.00011 30.1 1.4 43 37-79 64-108 (148)
113 2g9w_A Conserved hypothetical 60.0 5 0.00017 28.7 2.3 66 7-73 10-78 (138)
114 2vxz_A Pyrsv_GP04; viral prote 59.7 3.5 0.00012 32.9 1.5 60 6-71 11-70 (165)
115 2xvc_A ESCRT-III, SSO0910; cel 58.9 1.7 5.9E-05 29.5 -0.3 44 9-56 13-56 (59)
116 2p4w_A Transcriptional regulat 56.8 4.5 0.00016 31.7 1.8 68 4-77 13-85 (202)
117 2p8t_A Hypothetical protein PH 56.3 5.4 0.00019 32.1 2.2 43 35-81 40-82 (200)
118 1bm9_A RTP, TER, replication t 55.5 15 0.00052 27.5 4.4 45 34-80 49-104 (122)
119 2heo_A Z-DNA binding protein 1 54.0 3 0.0001 27.1 0.3 56 7-69 11-66 (67)
120 2dk5_A DNA-directed RNA polyme 38.6 11 0.00039 26.2 1.3 47 7-59 21-70 (91)
121 1ku9_A Hypothetical protein MJ 38.5 19 0.00066 24.4 2.4 34 36-69 52-88 (152)
122 3l09_A Putative transcriptiona 37.7 27 0.00091 29.0 3.6 42 36-77 56-97 (266)
123 1sd4_A Penicillinase repressor 36.9 30 0.001 23.5 3.3 64 8-72 12-76 (126)
124 1p6r_A Penicillinase repressor 36.9 21 0.00073 22.9 2.4 62 6-68 9-70 (82)
125 2o0m_A Transcriptional regulat 36.6 7.3 0.00025 32.3 0.0 61 6-76 20-81 (345)
126 2fu4_A Ferric uptake regulatio 34.6 4.9 0.00017 26.1 -1.2 63 5-68 16-82 (83)
127 3lwf_A LIN1550 protein, putati 33.3 7.4 0.00025 29.6 -0.5 56 1-60 20-79 (159)
128 1oyi_A Double-stranded RNA-bin 32.5 10 0.00035 26.6 0.2 60 5-71 16-75 (82)
129 1qbj_A Protein (double-strande 32.3 7.4 0.00025 26.7 -0.6 62 3-70 7-71 (81)
130 2yu3_A DNA-directed RNA polyme 32.2 13 0.00044 26.6 0.7 48 7-60 38-88 (95)
131 3r0a_A Putative transcriptiona 31.3 25 0.00084 24.8 2.1 49 6-59 26-76 (123)
132 1p4x_A Staphylococcal accessor 29.9 35 0.0012 27.4 3.0 44 36-79 185-231 (250)
133 1hsj_A Fusion protein consisti 27.1 42 0.0015 28.0 3.1 44 36-79 431-477 (487)
134 3t8r_A Staphylococcus aureus C 25.4 7.6 0.00026 28.6 -1.6 55 1-59 4-62 (143)
135 2o03_A Probable zinc uptake re 23.5 8.7 0.0003 27.6 -1.6 54 4-60 9-66 (131)
136 3m8e_A Putative DNA-binding pr 22.6 85 0.0029 23.2 3.7 43 36-78 71-113 (124)
137 4g6q_A Putative uncharacterize 22.3 36 0.0012 25.8 1.7 63 5-73 22-90 (182)
138 2k4b_A Transcriptional regulat 21.4 36 0.0012 23.8 1.4 58 9-67 38-95 (99)
139 3qph_A TRMB, A global transcri 21.3 27 0.00091 29.3 0.8 58 9-71 21-78 (342)
No 1
>2xzm_7 Plectin/S10 domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_7
Probab=100.00 E-value=1.5e-68 Score=426.28 Aligned_cols=120 Identities=33% Similarity=0.556 Sum_probs=96.8
Q ss_pred Cc-cchhhHHHHHHHhhhcccEEEeeCCCCCCCCCcc-CCcHHHHHHHhcccccCccceeeeeceeEEEecchhHHHHHh
Q psy5978 1 ML-MPKKNRYIIYEYLFKEGVLVAKKDFHAPKHPELD-VPNLQVIKTLQSLKSKGWVNEQFAWRHYYWYITNDGIEKLRG 78 (159)
Q Consensus 1 Ml-ipk~~r~~IYe~LFkeGV~VakKD~~~~~Hpel~-vpNL~Vik~mqSLkSrGyVke~FaWrh~Yw~LTneGI~yLR~ 78 (159)
|| |||+||++||++||||||||||||++ +||||+ ||||||||+||||+|||||||||||||||||||||||+|||+
T Consensus 1 Ml~ipK~nR~~IYe~LFkeGV~VaKKD~~--kHpel~~vpNL~ViKamqSLkSRGyVkEqFaWrhyYw~LTnEGIeYLR~ 78 (162)
T 2xzm_7 1 MVHVLKATKIRIYKQLLQDGVFVLKKDFE--GHHEETGVPNLHCYILVRSLKDRGFLEEIFNWGFTYYYLNKEGCEYLKT 78 (162)
T ss_dssp -CCCCHHHHHHHHHHHHHHTEEEEESCSS--SBCTTTCCBHHHHHHHHHHHHHHTSEEEEEETTEEEEEECHHHHHHHHH
T ss_pred CCccchHHHHHHHHHHhhcCcEEEecccc--CCCcccCcCcHHHHHHHhcccccccccceeeeEEEEEEEchHHHHHHHH
Confidence 99 99999999999999999999999999 999998 999999999999999999999999999999999999999999
Q ss_pred hcCCCCC-CCccccccccCCCCCCCCCCCCCCCCCCCCC-CCccccccC
Q psy5978 79 VLNIPDE-IVPSTLKRQARTTDASKVPRQMTQRPDGGRG-ADDRMSYRK 125 (159)
Q Consensus 79 yLhLP~e-iVPaTlk~~~r~~~~rpr~~~~g~~~~~~~~-~~dr~~YRr 125 (159)
|||||+| |||+||+++.++ +.||++.. ++.+.+++ ++||++||+
T Consensus 79 yLhLP~e~IVPaTlk~~~~~-~~rp~~~~--~~~r~~r~~~~dR~~YRr 124 (162)
T 2xzm_7 79 KLGISADNVIPKTFKASNVN-FISKEEDE--EERPRRQFNKGGRTGERD 124 (162)
T ss_dssp HHCSSTTSCCCGGGSCCCCC-CCCCCCC---------------------
T ss_pred HhCCCccccccchhccccCC-CCCCCCCC--CCCCCCCCCCCChhhhhc
Confidence 9999999 999999998665 66777632 22333333 478999997
No 2
>3u5c_K 40S ribosomal protein S10-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_K
Probab=100.00 E-value=7.4e-66 Score=387.63 Aligned_cols=102 Identities=53% Similarity=0.896 Sum_probs=94.7
Q ss_pred CccchhhHHHHHHHhhhcccEEEeeCCCCCCCCCccCCcHHHHHHHhcccccCccceeeeeceeEEEecchhHHHHHhhc
Q psy5978 1 MLMPKKNRYIIYEYLFKEGVLVAKKDFHAPKHPELDVPNLQVIKTLQSLKSKGWVNEQFAWRHYYWYITNDGIEKLRGVL 80 (159)
Q Consensus 1 Mlipk~~r~~IYe~LFkeGV~VakKD~~~~~Hpel~vpNL~Vik~mqSLkSrGyVke~FaWrh~Yw~LTneGI~yLR~yL 80 (159)
|||||+||++|||+||||||||||||+++++|||++||||||||+||||+|||||||||||||||||||||||+|||+||
T Consensus 1 MlipK~~r~~IYe~LFkEGV~vakKD~~~~kH~el~vpNL~Vik~mqSLkSrGyVkeqFaWrh~Yw~LTnEGieyLR~yL 80 (105)
T 3u5c_K 1 MLMPKEDRNKIHQYLFQEGVVVAKKDFNQAKHEEIDTKNLYVIKALQSLTSKGYVKTQFSWQYYYYTLTEEGVEYLREYL 80 (105)
T ss_dssp CCCCHHHHHHHHHHHHHHSEEECCSCSCCSSCSSSSSCHHHHHHHHHHHHHTSSEEEECTTTCCEEEECHHHHHHHHHHT
T ss_pred CCccchhHHHHHHHHhhCCcEEEEcCCCCCCCCccCccchhHHHHHhcccccceeccEecceEEEEEEchhhHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccccccCCCCCCCC
Q psy5978 81 NIPDEIVPSTLKRQARTTDASKV 103 (159)
Q Consensus 81 hLP~eiVPaTlk~~~r~~~~rpr 103 (159)
|||+|||||||+++ +++++||+
T Consensus 81 hLP~eivPaTl~~~-~~~~~rp~ 102 (105)
T 3u5c_K 81 NLPEHIVPGTYIQE-RNPTQRPQ 102 (105)
T ss_dssp CCCSSCCSSCSCCS-CC------
T ss_pred CCCchhcCcccccc-CCCCCCCC
Confidence 99999999999996 66777765
No 3
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=96.33 E-value=0.0015 Score=43.88 Aligned_cols=72 Identities=18% Similarity=0.147 Sum_probs=54.2
Q ss_pred chhhHHHHHHHhhhcccEEEeeCCCCCCCCCccCCcHHHHHHHhcccccCccceee---eeceeEEEecchhHHHHHhhc
Q psy5978 4 PKKNRYIIYEYLFKEGVLVAKKDFHAPKHPELDVPNLQVIKTLQSLKSKGWVNEQF---AWRHYYWYITNDGIEKLRGVL 80 (159)
Q Consensus 4 pk~~r~~IYe~LFkeGV~VakKD~~~~~Hpel~vpNL~Vik~mqSLkSrGyVke~F---aWrh~Yw~LTneGI~yLR~yL 80 (159)
...++..|...|.++|-+-. .|.. ..+.++.=.|-..++.|...|+|...- .-+..||.||++|.+.+.+++
T Consensus 14 ~~~~~~~iL~~L~~~~~~~~-~ela----~~l~is~~tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~~g~~~~~~~~ 88 (100)
T 1ub9_A 14 GNPVRLGIMIFLLPRRKAPF-SQIQ----KVLDLTPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGMEEAKRFL 88 (100)
T ss_dssp HSHHHHHHHHHHHHHSEEEH-HHHH----HHTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHhcCCcCH-HHHH----HHHCcCHHHHHHHHHHHHHCCCEEEEecCCCcceEEEEECHHHHHHHHHHH
Confidence 45678899999987664432 3321 134578888999999999999999655 568899999999987776654
No 4
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=96.18 E-value=0.0037 Score=44.66 Aligned_cols=73 Identities=15% Similarity=0.259 Sum_probs=57.0
Q ss_pred cchhhHHHHHHHhhhcccEEEeeCCCCCCCCCccCCcHHHHHHHhcccccCccceeeeeceeEEEecchhHHHHHhhcC
Q psy5978 3 MPKKNRYIIYEYLFKEGVLVAKKDFHAPKHPELDVPNLQVIKTLQSLKSKGWVNEQFAWRHYYWYITNDGIEKLRGVLN 81 (159)
Q Consensus 3 ipk~~r~~IYe~LFkeGV~VakKD~~~~~Hpel~vpNL~Vik~mqSLkSrGyVke~FaWrh~Yw~LTneGI~yLR~yLh 81 (159)
+...+|..|...|.+ |-+.+ .|.. ..+.|+.=.|-+.++.|...|+|...-.-+..||.||++|++-|.+++.
T Consensus 15 l~~~~R~~Il~~L~~-~~~~~-~eLa----~~l~is~~tvs~hL~~L~~~GlV~~~~~gr~~~y~l~~~~~~~l~~~~~ 87 (118)
T 3f6o_A 15 LADPTRRAVLGRLSR-GPATV-SELA----KPFDMALPSFMKHIHFLEDSGWIRTHKQGRVRTCAIEKEPFTAVEAWLA 87 (118)
T ss_dssp HTSHHHHHHHHHHHT-CCEEH-HHHH----TTCCSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHh-CCCCH-HHHH----HHhCcCHHHHHHHHHHHHHCCCeEEEecCCEEEEEECHHHHHHHHHHHH
Confidence 345789999999985 44432 3332 2456888889999999999999998877899999999999987776553
No 5
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=96.16 E-value=0.0023 Score=42.97 Aligned_cols=72 Identities=14% Similarity=0.203 Sum_probs=53.9
Q ss_pred chhhHHHHHHHhhhcccEEEeeCCCCCCCCCccCCcHHHHHHHhcccccCccceeeeeceeEEEecchhHHHHHhhc
Q psy5978 4 PKKNRYIIYEYLFKEGVLVAKKDFHAPKHPELDVPNLQVIKTLQSLKSKGWVNEQFAWRHYYWYITNDGIEKLRGVL 80 (159)
Q Consensus 4 pk~~r~~IYe~LFkeGV~VakKD~~~~~Hpel~vpNL~Vik~mqSLkSrGyVke~FaWrh~Yw~LTneGI~yLR~yL 80 (159)
....+..|+..|.+.+-+-. .|.. ..+.++.=.|-..++.|.+.|+|...-.=+..||.||++|++-|-+.|
T Consensus 22 ~~~~~~~il~~l~~~~~~s~-~ela----~~l~is~~tvs~~l~~L~~~glv~~~~~~r~~~y~l~~~~~~~l~~~l 93 (99)
T 3cuo_A 22 SHPKRLLILCMLSGSPGTSA-GELT----RITGLSASATSQHLARMRDEGLIDSQRDAQRILYSIKNEAVNAIIATL 93 (99)
T ss_dssp CSHHHHHHHHHHTTCCSEEH-HHHH----HHHCCCHHHHHHHHHHHHHTTSEEEEECSSCEEEEECCHHHHHHHHHH
T ss_pred CChHHHHHHHHHHhCCCcCH-HHHH----HHHCcCHHHHHHHHHHHHHCCCEEEEecCCEEEEEEChHHHHHHHHHH
Confidence 34677888888876543322 2211 123588889999999999999998877788999999999997776654
No 6
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=95.87 E-value=0.0032 Score=43.55 Aligned_cols=71 Identities=20% Similarity=0.214 Sum_probs=52.1
Q ss_pred chhhHHHHHHHhhhcccEEEeeCCCCCCCCCccCCcHHHHHHHhcccccCccceeeeeceeEEEecchhHHHHHhhc
Q psy5978 4 PKKNRYIIYEYLFKEGVLVAKKDFHAPKHPELDVPNLQVIKTLQSLKSKGWVNEQFAWRHYYWYITNDGIEKLRGVL 80 (159)
Q Consensus 4 pk~~r~~IYe~LFkeGV~VakKD~~~~~Hpel~vpNL~Vik~mqSLkSrGyVke~FaWrh~Yw~LTneGI~yLR~yL 80 (159)
...+|..|...| .+|-+-+ .|. ...+.++.=.|-..++.|...|+|...-.-|..||.||++|++.+.+.+
T Consensus 19 ~~~~r~~IL~~L-~~~~~~~-~el----a~~l~is~~tv~~~l~~L~~~gli~~~~~gr~~~y~l~~~~~~~~~~~~ 89 (114)
T 2oqg_A 19 SDETRWEILTEL-GRADQSA-SSL----ATRLPVSRQAIAKHLNALQACGLVESVKVGREIRYRALGAELNKTARTL 89 (114)
T ss_dssp TCHHHHHHHHHH-HHSCBCH-HHH----HHHSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSHHHHHHHHHH
T ss_pred CChHHHHHHHHH-HcCCCCH-HHH----HHHHCcCHHHHHHHHHHHHHCCCeeEEecCCEEEEEechHHHHHHHHHH
Confidence 345678888888 5553211 221 1134588888999999999999998766678999999999998776654
No 7
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=95.82 E-value=0.0051 Score=46.70 Aligned_cols=72 Identities=15% Similarity=0.301 Sum_probs=57.6
Q ss_pred chhhHHHHHHHhhhcccEEEeeCCCCCCCCCccCCcHHHHHHHhcccccCccceeeeeceeEEEecchhHHHHHhhcC
Q psy5978 4 PKKNRYIIYEYLFKEGVLVAKKDFHAPKHPELDVPNLQVIKTLQSLKSKGWVNEQFAWRHYYWYITNDGIEKLRGVLN 81 (159)
Q Consensus 4 pk~~r~~IYe~LFkeGV~VakKD~~~~~Hpel~vpNL~Vik~mqSLkSrGyVke~FaWrh~Yw~LTneGI~yLR~yLh 81 (159)
...+|..|...|.++. +.+ .+.. ..+.++.=.|-..|+.|+..|+|...-.-|..||.||++|++-|.+.|.
T Consensus 56 ~~p~R~~IL~~L~~~~-~t~-~eLa----~~lgls~stvs~hL~~L~~aGlV~~~~~Gr~~~y~lt~~~~~~l~~~l~ 127 (151)
T 3f6v_A 56 AEPTRRRLVQLLTSGE-QTV-NNLA----AHFPASRSAISQHLRVLTEAGLVTPRKDGRFRYYRLDPQGLAQLRALFD 127 (151)
T ss_dssp TSHHHHHHHHHGGGCC-EEH-HHHH----TTSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCC-CCH-HHHH----HHHCcCHHHHHHHHHHHHHCCCEEEEecCCEEEEEEChHHHHHHHHHHH
Confidence 4567999999998544 332 3322 2456888889999999999999998888999999999999999888763
No 8
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=95.66 E-value=0.011 Score=40.30 Aligned_cols=45 Identities=16% Similarity=0.184 Sum_probs=39.8
Q ss_pred ccCCcHHHHHHHhcccccCccceeeeeceeEEEecchhHHHHHhh
Q psy5978 35 LDVPNLQVIKTLQSLKSKGWVNEQFAWRHYYWYITNDGIEKLRGV 79 (159)
Q Consensus 35 l~vpNL~Vik~mqSLkSrGyVke~FaWrh~Yw~LTneGI~yLR~y 79 (159)
+.++.=.|.++++.|..+|||.....=|..++.||++|.+.+.+.
T Consensus 36 l~is~~tvs~~l~~Le~~gli~r~~~~r~~~~~LT~~G~~~~~~~ 80 (99)
T 1tbx_A 36 FPMSTATFYDAKKFLIQEGFVKERQERGEKRLYLTEKGKLFAISL 80 (99)
T ss_dssp SCCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHCCCEEEEecCCceEEEECHHHHHHHHHH
Confidence 457778899999999999999987777999999999999998764
No 9
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=95.50 E-value=0.0079 Score=41.03 Aligned_cols=72 Identities=17% Similarity=0.291 Sum_probs=55.1
Q ss_pred cchhhHHHHHHHhhhcccEEEeeCCCCCCCCCccCCcHHHHHHHhcccccCccceeeeeceeEEEecchhHHHHHhhc
Q psy5978 3 MPKKNRYIIYEYLFKEGVLVAKKDFHAPKHPELDVPNLQVIKTLQSLKSKGWVNEQFAWRHYYWYITNDGIEKLRGVL 80 (159)
Q Consensus 3 ipk~~r~~IYe~LFkeGV~VakKD~~~~~Hpel~vpNL~Vik~mqSLkSrGyVke~FaWrh~Yw~LTneGI~yLR~yL 80 (159)
+...+|..|.+.|.+ |-+-+ .|.. ..+.++.=.|-+.++.|...|+|...-.-++.||.||+++++.|-+.|
T Consensus 20 l~~~~r~~Il~~L~~-~~~~~-~ela----~~l~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~~~~~~l~~~l 91 (98)
T 3jth_A 20 MANERRLQILCMLHN-QELSV-GELC----AKLQLSQSALSQHLAWLRRDGLVTTRKEAQTVYYTLKSEEVKAMIKLL 91 (98)
T ss_dssp HCSHHHHHHHHHTTT-SCEEH-HHHH----HHHTCCHHHHHHHHHHHHHTTSEEEECCTTCCEEEECCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHhc-CCCCH-HHHH----HHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECHHHHHHHHHHH
Confidence 345678899999876 54332 2211 123588888999999999999999888888999999999998777655
No 10
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=94.84 E-value=0.016 Score=40.80 Aligned_cols=71 Identities=20% Similarity=0.276 Sum_probs=53.1
Q ss_pred chhhHHHHHHHhhhcccEEEeeCCCCCCCCCccCCcHHHHHHHhcccccCccceeeeeceeEEEecchhHHHHHhhc
Q psy5978 4 PKKNRYIIYEYLFKEGVLVAKKDFHAPKHPELDVPNLQVIKTLQSLKSKGWVNEQFAWRHYYWYITNDGIEKLRGVL 80 (159)
Q Consensus 4 pk~~r~~IYe~LFkeGV~VakKD~~~~~Hpel~vpNL~Vik~mqSLkSrGyVke~FaWrh~Yw~LTneGI~yLR~yL 80 (159)
....|..|...|.+ |-+-+ +|.. ..+.|+.=.|-+.++.|...|+|...-.-+..||.||++++.-|-+.|
T Consensus 23 ~~~~r~~IL~~L~~-~~~s~-~eLa----~~lgis~stvs~~L~~L~~~GlV~~~~~gr~~~y~l~~~~~~~l~~~l 93 (108)
T 2kko_A 23 ANGRRLQILDLLAQ-GERAV-EAIA----TATGMNLTTASANLQALKSGGLVEARREGTRQYYRIAGEDVARLFALV 93 (108)
T ss_dssp TTSTTHHHHHHHTT-CCEEH-HHHH----HHHTCCHHHHHHHHHHHHHHTSEEEEEETTEEEEEESCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHc-CCcCH-HHHH----HHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChHHHHHHHHHH
Confidence 34567888888764 43322 2321 134588889999999999999998777778899999999997776655
No 11
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=94.67 E-value=0.031 Score=38.19 Aligned_cols=45 Identities=13% Similarity=0.190 Sum_probs=39.0
Q ss_pred ccCCcHHHHHHHhcccccCccceeeeeceeEEEecchhHHHHHhh
Q psy5978 35 LDVPNLQVIKTLQSLKSKGWVNEQFAWRHYYWYITNDGIEKLRGV 79 (159)
Q Consensus 35 l~vpNL~Vik~mqSLkSrGyVke~FaWrh~Yw~LTneGI~yLR~y 79 (159)
+.++.=.|..+++.|..+|||...-.-|-.+++||++|.+++.+.
T Consensus 40 l~i~~~tvs~~l~~Le~~Glv~~~~d~R~~~v~LT~~G~~~~~~~ 84 (95)
T 2qvo_A 40 VNSPHSYVWLIIKKFEEAKMVECELEGRTKIIRLTDKGQKIAQQI 84 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHH
T ss_pred HCcCHHHHHHHHHHHHHCcCccCCCCCCeEEEEEChhHHHHHHHH
Confidence 358888999999999999999666667888999999999998764
No 12
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=94.48 E-value=0.0073 Score=42.45 Aligned_cols=65 Identities=18% Similarity=0.273 Sum_probs=50.3
Q ss_pred hhHHHHHHHhhhcccEEEeeCCCCCCCCCccCCcH-HHHHHHhcccccCccceeeeeceeEEEecchhHHHH
Q psy5978 6 KNRYIIYEYLFKEGVLVAKKDFHAPKHPELDVPNL-QVIKTLQSLKSKGWVNEQFAWRHYYWYITNDGIEKL 76 (159)
Q Consensus 6 ~~r~~IYe~LFkeGV~VakKD~~~~~Hpel~vpNL-~Vik~mqSLkSrGyVke~FaWrh~Yw~LTneGI~yL 76 (159)
..+.+|+.+|.+.|=+-| +|.- .+|.|+-- .|-..|++|...|+|..+=.=|- +|.||++|-+.+
T Consensus 11 ~~~~~IL~~Lk~~g~~ta-~eiA----~~Lgit~~~aVr~hL~~Le~eGlV~~~~~gRP-~w~LT~~g~~~~ 76 (79)
T 1xmk_A 11 EIKEKICDYLFNVSDSSA-LNLA----KNIGLTKARDINAVLIDMERQGDVYRQGTTPP-IWHLTDKKRERM 76 (79)
T ss_dssp HHHHHHHHHHHHTCCEEH-HHHH----HHHCGGGHHHHHHHHHHHHHTTSEEEECSSSC-EEEECHHHHTTT
T ss_pred hHHHHHHHHHHHcCCcCH-HHHH----HHcCCCcHHHHHHHHHHHHHCCCEEecCCCCC-CeEeCHhHHhHh
Confidence 567899999999987665 3321 14568888 99999999999999974433365 999999998765
No 13
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=94.39 E-value=0.022 Score=39.11 Aligned_cols=72 Identities=14% Similarity=0.292 Sum_probs=52.9
Q ss_pred cchhhHHHHHHHhhhcccEEEeeCCCCCCCCCccCCcHHHHHHHhcccccCccceeeeeceeEEEecchhHHHHHhhc
Q psy5978 3 MPKKNRYIIYEYLFKEGVLVAKKDFHAPKHPELDVPNLQVIKTLQSLKSKGWVNEQFAWRHYYWYITNDGIEKLRGVL 80 (159)
Q Consensus 3 ipk~~r~~IYe~LFkeGV~VakKD~~~~~Hpel~vpNL~Vik~mqSLkSrGyVke~FaWrh~Yw~LTneGI~yLR~yL 80 (159)
+....|..|...|.+ |-+-+ .|. -..+.++.=.|-+.|+.|...|+|...-.-++.||.||+++++-+-+.|
T Consensus 20 l~~~~r~~Il~~L~~-~~~~~-~el----a~~l~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~~~~~~~~~~l 91 (102)
T 3pqk_A 20 LSHPVRLMLVCTLVE-GEFSV-GEL----EQQIGIGQPTLSQQLGVLRESGIVETRRNIKQIFYRLTEAKAAQLVNAL 91 (102)
T ss_dssp HCSHHHHHHHHHHHT-CCBCH-HHH----HHHHTCCTTHHHHHHHHHHHTTSEEEECSSSCCEEEECSSTHHHHHHHH
T ss_pred cCCHHHHHHHHHHHh-CCCCH-HHH----HHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECcHHHHHHHHHH
Confidence 345788899999964 43211 221 1123577778999999999999998877778999999999997766554
No 14
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=93.82 E-value=0.036 Score=38.45 Aligned_cols=72 Identities=22% Similarity=0.282 Sum_probs=55.3
Q ss_pred chhhHHHHHHHhhhcccEEEeeCCCCCCCCCccCCcHHHHHHHhcccccCccceeeeeceeEEEecchhHHHHHhhcC
Q psy5978 4 PKKNRYIIYEYLFKEGVLVAKKDFHAPKHPELDVPNLQVIKTLQSLKSKGWVNEQFAWRHYYWYITNDGIEKLRGVLN 81 (159)
Q Consensus 4 pk~~r~~IYe~LFkeGV~VakKD~~~~~Hpel~vpNL~Vik~mqSLkSrGyVke~FaWrh~Yw~LTneGI~yLR~yLh 81 (159)
...+|.+|...|..+|-+.+ .|.. ..+.++.=.|-+.++.|... +|...-.-++.||.||+++++-+.++|.
T Consensus 25 ~~~~Rl~IL~~l~~~~~~~~-~ela----~~l~is~stvs~hL~~L~~~-lv~~~~~gr~~~y~l~~~~~~~~~~~l~ 96 (99)
T 2zkz_A 25 AHPMRLKIVNELYKHKALNV-TQII----QILKLPQSTVSQHLCKMRGK-VLKRNRQGLEIYYSINNPKVEGIIKLLN 96 (99)
T ss_dssp CSHHHHHHHHHHHHHSCEEH-HHHH----HHHTCCHHHHHHHHHHHBTT-TBEEEEETTEEEEECCCHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHCCCcCH-HHHH----HHHCcCHHHHHHHHHHHHHH-hhhheEeCcEEEEEEChHHHHHHHHHHH
Confidence 34678899988877664433 2221 13458888999999999999 9987778899999999999988877763
No 15
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=93.70 E-value=0.094 Score=37.38 Aligned_cols=73 Identities=18% Similarity=0.284 Sum_probs=51.2
Q ss_pred chhhHHHHHHHhhhcccEEEeeCCCCCCCCCccCCcHHHHHHHhcccccCccceeeeeceeEEEecchhHH-HHHhhcCC
Q psy5978 4 PKKNRYIIYEYLFKEGVLVAKKDFHAPKHPELDVPNLQVIKTLQSLKSKGWVNEQFAWRHYYWYITNDGIE-KLRGVLNI 82 (159)
Q Consensus 4 pk~~r~~IYe~LFkeGV~VakKD~~~~~Hpel~vpNL~Vik~mqSLkSrGyVke~FaWrh~Yw~LTneGI~-yLR~yLhL 82 (159)
....|..|...|. +|-+-+ .| .-..+.++.=.|-+.++.|...|+|...-.=++.||.||++++. .+...+.+
T Consensus 19 ~~~~r~~IL~~L~-~~~~~~-~e----La~~lgis~stvs~~L~~L~~~GlV~~~~~gr~~~y~l~~~~~~~~~~~l~~~ 92 (118)
T 2jsc_A 19 ADPTRCRILVALL-DGVCYP-GQ----LAAHLGLTRSNVSNHLSCLRGCGLVVATYEGRQVRYALADSHLARALGELVQV 92 (118)
T ss_dssp SSHHHHHHHHHHH-TTCCST-TT----HHHHHSSCHHHHHHHHHHHTTTTSEEEEECSSSEEEEESSHHHHHHHHHCCSS
T ss_pred CCHHHHHHHHHHH-cCCCCH-HH----HHHHHCcCHHHHHHHHHHHHHCCceEEEEECCEEEEEEChHHHHHHHHHHHHH
Confidence 3467888999876 342110 11 01123588889999999999999998776678899999999995 44444444
No 16
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=93.58 E-value=0.023 Score=40.87 Aligned_cols=69 Identities=20% Similarity=0.170 Sum_probs=48.6
Q ss_pred hhhHHHHHHHhhhcccEEEeeCCCCCCCCCccCCcHHHHHHHhcccccCccceeeeeceeEEEecchhHHHHHh
Q psy5978 5 KKNRYIIYEYLFKEGVLVAKKDFHAPKHPELDVPNLQVIKTLQSLKSKGWVNEQFAWRHYYWYITNDGIEKLRG 78 (159)
Q Consensus 5 k~~r~~IYe~LFkeGV~VakKD~~~~~Hpel~vpNL~Vik~mqSLkSrGyVke~FaWrh~Yw~LTneGI~yLR~ 78 (159)
..+|..|...|.++|-+-+ .|.. ..+.++.=.|-+.++.|...|+|...-.-++.||.||+++|.-+-+
T Consensus 41 ~~~rl~IL~~L~~~~~~s~-~eLa----~~l~is~stvs~~L~~L~~~Glv~~~~~gr~~~y~l~~~~~~~~~~ 109 (122)
T 1u2w_A 41 DENRAKITYALCQDEELCV-CDIA----NILGVTIANASHHLRTLYKQGVVNFRKEGKLALYSLGDEHIRQIMM 109 (122)
T ss_dssp SHHHHHHHHHHHHSSCEEH-HHHH----HHHTCCHHHHHHHHHHHHHTTSEEEC----CCEEEESCHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCcCH-HHHH----HHHCcCHHHHHHHHHHHHHCCCeEEEEECCEEEEEECHHHHHHHHH
Confidence 4567889999886654433 2221 1345888889999999999999987666688999999999865443
No 17
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=93.39 E-value=0.058 Score=37.87 Aligned_cols=68 Identities=13% Similarity=0.201 Sum_probs=48.6
Q ss_pred HHHHHHHhhhcccEEEeeCCCCCCCCCccCCcHHHHHHHhcccccCccceeee---eceeEEEecchhHHHHHhhc
Q psy5978 8 RYIIYEYLFKEGVLVAKKDFHAPKHPELDVPNLQVIKTLQSLKSKGWVNEQFA---WRHYYWYITNDGIEKLRGVL 80 (159)
Q Consensus 8 r~~IYe~LFkeGV~VakKD~~~~~Hpel~vpNL~Vik~mqSLkSrGyVke~Fa---Wrh~Yw~LTneGI~yLR~yL 80 (159)
...|...|...|-+ ..+|.. ..+.++.=.|.++++.|.++|||...-. -|..|+.||++|.+++.+..
T Consensus 39 ~~~iL~~l~~~~~~-~~~ela----~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 109 (142)
T 2bv6_A 39 QFLVLTILWDESPV-NVKKVV----TELALDTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIRPELS 109 (142)
T ss_dssp HHHHHHHHHHSSEE-EHHHHH----HHTTCCTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCc-CHHHHH----HHHCCChhhHHHHHHHHHHCCCEEeecCCCCcceEEEEEChHHHHHHHHHH
Confidence 34566667665532 223321 1234666678999999999999988765 78899999999999987654
No 18
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=92.91 E-value=0.084 Score=36.97 Aligned_cols=44 Identities=20% Similarity=0.212 Sum_probs=38.0
Q ss_pred cCCcHHHHHHHhcccccCccceeee---eceeEEEecchhHHHHHhh
Q psy5978 36 DVPNLQVIKTLQSLKSKGWVNEQFA---WRHYYWYITNDGIEKLRGV 79 (159)
Q Consensus 36 ~vpNL~Vik~mqSLkSrGyVke~Fa---Wrh~Yw~LTneGI~yLR~y 79 (159)
.++.=.|..+++.|..+|||...-. -|..|+.||++|.+++.+.
T Consensus 61 ~~s~~tvs~~l~~Le~~glv~r~~~~~d~r~~~~~lT~~G~~~~~~~ 107 (146)
T 2gxg_A 61 FVTQSAITASVDKLEEMGLVVRVRDREDRRKILIEITEKGLETFNKG 107 (146)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHCCCEEeecCCCCCceEEEEECHHHHHHHHHH
Confidence 4788889999999999999987643 7889999999999988754
No 19
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=92.84 E-value=0.095 Score=36.31 Aligned_cols=45 Identities=11% Similarity=0.172 Sum_probs=38.1
Q ss_pred ccCCcHHHHHHHhcccccCccceee---eeceeEEEecchhHHHHHhh
Q psy5978 35 LDVPNLQVIKTLQSLKSKGWVNEQF---AWRHYYWYITNDGIEKLRGV 79 (159)
Q Consensus 35 l~vpNL~Vik~mqSLkSrGyVke~F---aWrh~Yw~LTneGI~yLR~y 79 (159)
+.++.=.|..+++.|.++|||...- .-|..++.||++|.+.+.+.
T Consensus 62 l~~~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~ 109 (140)
T 2nnn_A 62 TAMDAATIKGVVERLDKRGLIQRSADPDDGRRLLVSLSPAGRAELEAG 109 (140)
T ss_dssp TTCCHHHHHHHHHHHHHTTCEEEEEETTEEEEEEEEECHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHCCCEEeeCCCCCCCeeeeEECHhHHHHHHHH
Confidence 3478888999999999999998753 46889999999999888754
No 20
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=92.81 E-value=0.096 Score=36.39 Aligned_cols=66 Identities=15% Similarity=0.194 Sum_probs=46.9
Q ss_pred HHHHHHhhhcccEEEeeCCCCCCCCCccCCcHHHHHHHhcccccCccceee---eeceeEEEecchhHHHHHhh
Q psy5978 9 YIIYEYLFKEGVLVAKKDFHAPKHPELDVPNLQVIKTLQSLKSKGWVNEQF---AWRHYYWYITNDGIEKLRGV 79 (159)
Q Consensus 9 ~~IYe~LFkeGV~VakKD~~~~~Hpel~vpNL~Vik~mqSLkSrGyVke~F---aWrh~Yw~LTneGI~yLR~y 79 (159)
..|...|.+.|-+- .+|.. ..+.++.=.|.++++.|..+|||...- .-|..+++||++|.+++.+.
T Consensus 39 ~~iL~~l~~~~~~t-~~ela----~~l~~s~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~ 107 (142)
T 2fbi_A 39 WRVIRILRQQGEME-SYQLA----NQACILRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCFVSM 107 (142)
T ss_dssp HHHHHHHHHHCSEE-HHHHH----HHTTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCC-HHHHH----HHHCCCHhHHHHHHHHHHHCCCEEeecCCCCCCeeEEEECHHHHHHHHHH
Confidence 45666666544322 23321 123577888999999999999998753 47889999999999988753
No 21
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=92.73 E-value=0.085 Score=37.51 Aligned_cols=69 Identities=16% Similarity=0.250 Sum_probs=50.4
Q ss_pred cchhhHHHHHHHhhhcccEE-EeeCCCCCCCCCc-cCCcHHHHHHHhcccccCccceeeeeceeEEEecchhHHHHH
Q psy5978 3 MPKKNRYIIYEYLFKEGVLV-AKKDFHAPKHPEL-DVPNLQVIKTLQSLKSKGWVNEQFAWRHYYWYITNDGIEKLR 77 (159)
Q Consensus 3 ipk~~r~~IYe~LFkeGV~V-akKD~~~~~Hpel-~vpNL~Vik~mqSLkSrGyVke~FaWrh~Yw~LTneGI~yLR 77 (159)
+..+.+..|...|. +|-+- .-.|.. ..+ .|..=.+.+.++.|...|+|+..-. +..+|.||++|.+.+.
T Consensus 24 l~~~wrl~IL~~L~-~g~~~~~~~eL~----~~l~gis~~~ls~~L~~Le~~GlV~r~~~-r~~~y~LT~~G~~l~~ 94 (111)
T 3df8_A 24 LGKKYTMLIISVLG-NGSTRQNFNDIR----SSIPGISSTILSRRIKDLIDSGLVERRSG-QITTYALTEKGMNVRN 94 (111)
T ss_dssp HHSTTHHHHHHHHT-SSSSCBCHHHHH----HTSTTCCHHHHHHHHHHHHHTTSEEEEES-SSEEEEECHHHHHHHH
T ss_pred HcCccHHHHHHHHh-cCCCCCCHHHHH----HHccCCCHHHHHHHHHHHHHCCCEEEeec-CcEEEEECccHHHHHH
Confidence 34566778888887 45332 012321 245 4788889999999999999998877 9999999999976543
No 22
>2hgc_A YJCQ protein; SR346, structure, autostructure, NESG, PSI-2, northeast structural genomics consortium, protein structure initiative; NMR {Bacillus subtilis} SCOP: a.4.5.77
Probab=92.62 E-value=0.055 Score=39.97 Aligned_cols=64 Identities=19% Similarity=0.205 Sum_probs=48.5
Q ss_pred hHHHHHHHhhhcccEEEeeCCCCCCCCCccCCcHHHHHHHhcccccCccceeeeeceeE------EEecchhHHHHHh
Q psy5978 7 NRYIIYEYLFKEGVLVAKKDFHAPKHPELDVPNLQVIKTLQSLKSKGWVNEQFAWRHYY------WYITNDGIEKLRG 78 (159)
Q Consensus 7 ~r~~IYe~LFkeGV~VakKD~~~~~Hpel~vpNL~Vik~mqSLkSrGyVke~FaWrh~Y------w~LTneGI~yLR~ 78 (159)
...+|..+|.++|. +. .+..+.|+.-.-..+++.|...||++-..-|+.-+ =.+|-+||+||.|
T Consensus 6 iiYkIL~~L~~~~~-------~i-s~e~l~Ise~~~~~il~~L~d~GyI~Gv~~~~~~~~i~~~~~~IT~~GleYL~E 75 (102)
T 2hgc_A 6 LRYAILKEIFEGNT-------PL-SENDIGVTEDQFDDAVNFLKREGYIIGVHYSDDRPHLYKLGPELTEKGENYLKE 75 (102)
T ss_dssp CHHHHHHHHHHHCS-------CC-CHHHHTSCHHHHHHHHHHHHHHTSEECCEESSSSEECCSSCCEECHHHHHHHHH
T ss_pred eHHHHHHHHHhCCC-------cC-CHHhcCCCHHHHHHHHHHHHHCCCccceEEEeCcceeeccCceECHHHHHHHHH
Confidence 35678888887433 22 23455799999999999999999999876665422 2489999999998
No 23
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=92.48 E-value=0.11 Score=36.05 Aligned_cols=69 Identities=20% Similarity=0.183 Sum_probs=49.7
Q ss_pred chhhHHHHHHHhhhcccEEEeeCCCCCCCCCccCCcHHHHHHHhcccccCccceeeeeceeEEEecchhH-HHHHh
Q psy5978 4 PKKNRYIIYEYLFKEGVLVAKKDFHAPKHPELDVPNLQVIKTLQSLKSKGWVNEQFAWRHYYWYITNDGI-EKLRG 78 (159)
Q Consensus 4 pk~~r~~IYe~LFkeGV~VakKD~~~~~Hpel~vpNL~Vik~mqSLkSrGyVke~FaWrh~Yw~LTneGI-~yLR~ 78 (159)
....|..|...|.+.++-+ .|. -..+.++.=.|-+.++.|...|+|...-.=++.||.||++++ +++..
T Consensus 24 ~~~~r~~IL~~L~~~~~~~--~el----a~~l~is~stvs~~L~~L~~~Glv~~~~~gr~~~y~l~~~~~~~~~~~ 93 (106)
T 1r1u_A 24 GDYNRIRIMELLSVSEASV--GHI----SHQLNLSQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLDDIHVATMLKQ 93 (106)
T ss_dssp CSHHHHHHHHHHHHCCBCH--HHH----HHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEESSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCH--HHH----HHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChHHHHHHHHH
Confidence 3467888998887433222 111 112358888899999999999999876666899999999998 45444
No 24
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=92.29 E-value=0.087 Score=36.61 Aligned_cols=41 Identities=20% Similarity=0.290 Sum_probs=37.1
Q ss_pred cCCcHHHHHHHhcccccCccceeee---eceeEEEecchhHHHH
Q psy5978 36 DVPNLQVIKTLQSLKSKGWVNEQFA---WRHYYWYITNDGIEKL 76 (159)
Q Consensus 36 ~vpNL~Vik~mqSLkSrGyVke~Fa---Wrh~Yw~LTneGI~yL 76 (159)
.++.=.|..+++.|..+|||...-. -|..++.||++|.+++
T Consensus 56 ~is~~~vs~~l~~L~~~gli~~~~~~~d~r~~~~~lT~~G~~~~ 99 (142)
T 3bdd_A 56 QIDRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREAL 99 (142)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 4888889999999999999988765 7889999999999998
No 25
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=92.15 E-value=0.065 Score=37.69 Aligned_cols=67 Identities=18% Similarity=0.210 Sum_probs=43.9
Q ss_pred HHHHHHHhhhcccEEEeeCCCCCCCCCccCCcHHHHHHHhcccccCccceee---eeceeEEEecchhHHHHHhhc
Q psy5978 8 RYIIYEYLFKEGVLVAKKDFHAPKHPELDVPNLQVIKTLQSLKSKGWVNEQF---AWRHYYWYITNDGIEKLRGVL 80 (159)
Q Consensus 8 r~~IYe~LFkeGV~VakKD~~~~~Hpel~vpNL~Vik~mqSLkSrGyVke~F---aWrh~Yw~LTneGI~yLR~yL 80 (159)
...|...|...+ +..+|.. ..+.|+.=.|..+++.|..+|||...- .-|..++.||++|.+.+.+..
T Consensus 40 ~~~iL~~l~~~~--~t~~eLa----~~l~~s~~tvs~~l~~L~~~Glv~r~~~~~d~R~~~~~lT~~g~~~~~~~~ 109 (146)
T 3tgn_A 40 QEHILMLLSEES--LTNSELA----RRLNVSQAAVTKAIKSLVKEGMLETSKDSKDARVIFYQLTDLARPIAEEHH 109 (146)
T ss_dssp HHHHHHHHTTCC--CCHHHHH----HHHTCCHHHHHHHHHHHHHTTSEEC----------CCEECGGGHHHHHHHH
T ss_pred HHHHHHHHHhCC--CCHHHHH----HHHCCCHHHHHHHHHHHHHCCCeEeccCCCCCceeEEEECHhHHHHHHHHH
Confidence 345666666555 2222221 123588889999999999999998766 688999999999999987654
No 26
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=92.09 E-value=0.066 Score=39.33 Aligned_cols=70 Identities=21% Similarity=0.288 Sum_probs=51.6
Q ss_pred hhHHHHHHHhhhcccEEEeeCCCCCCCCCccCCcHHHHHHHhcccccCccceeeeeceeEEEecchhHHHHHhhcC
Q psy5978 6 KNRYIIYEYLFKEGVLVAKKDFHAPKHPELDVPNLQVIKTLQSLKSKGWVNEQFAWRHYYWYITNDGIEKLRGVLN 81 (159)
Q Consensus 6 ~~r~~IYe~LFkeGV~VakKD~~~~~Hpel~vpNL~Vik~mqSLkSrGyVke~FaWrh~Yw~LTneGI~yLR~yLh 81 (159)
....+|.+.|-++|-+-+ .+.. .+-++.++.-.|-+.|+.|...|+|+.. . |. +|.||++|.+||.+.+.
T Consensus 13 ~~d~~IL~~L~~~g~~s~-~eLA--~~l~~giS~~aVs~rL~~Le~~GLV~~~-~-rg-~Y~LT~~G~~~l~~~~d 82 (111)
T 3b73_A 13 IWDDRILEIIHEEGNGSP-KELE--DRDEIRISKSSVSRRLKKLADHDLLQPL-A-NG-VYVITEEGEAYLNGEYD 82 (111)
T ss_dssp HHHHHHHHHHHHHSCBCH-HHHH--TSTTCCSCHHHHHHHHHHHHHTTSEEEC-S-TT-CEEECHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHcCCCCH-HHHH--HHHhcCCCHHHHHHHHHHHHHCCCEEec-C-Cc-eEEECchHHHHHHHHHH
Confidence 345689999988885443 2221 2212267888999999999999999875 3 33 99999999999986543
No 27
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=91.88 E-value=0.085 Score=37.16 Aligned_cols=40 Identities=13% Similarity=0.224 Sum_probs=33.8
Q ss_pred cCCcHHHHHHHhcccccCccceeeeeceeEEEecchhHHHHHhh
Q psy5978 36 DVPNLQVIKTLQSLKSKGWVNEQFAWRHYYWYITNDGIEKLRGV 79 (159)
Q Consensus 36 ~vpNL~Vik~mqSLkSrGyVke~FaWrh~Yw~LTneGI~yLR~y 79 (159)
+++.=.+-+.+..|+++|||... ... +.||++|.++|.++
T Consensus 31 ~ls~~~~~~~l~~L~~~GLI~~~-~~~---~~LT~kG~~~l~~l 70 (95)
T 1r7j_A 31 NLSYALTGRYIKMLMDLEIIRQE-GKQ---YMLTKKGEELLEDI 70 (95)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEE-TTE---EEECHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHCCCeEEE-CCe---eEEChhHHHHHHHH
Confidence 58888999999999999999876 333 78999999888754
No 28
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=91.87 E-value=0.13 Score=36.78 Aligned_cols=46 Identities=20% Similarity=0.331 Sum_probs=36.2
Q ss_pred CCc-HHHHHHHhcccccCccceeee----eceeEEEecchhHHHHHhhcCC
Q psy5978 37 VPN-LQVIKTLQSLKSKGWVNEQFA----WRHYYWYITNDGIEKLRGVLNI 82 (159)
Q Consensus 37 vpN-L~Vik~mqSLkSrGyVke~Fa----Wrh~Yw~LTneGI~yLR~yLhL 82 (159)
+.. =.|..+++.|...|||...-. =+.-||.||++|.+.|.+.+..
T Consensus 46 is~~~tly~~L~~Le~~GlI~~~~~~~~~~~r~~Y~LT~~G~~~l~~~~~~ 96 (118)
T 2esh_A 46 IGHMGNIYRVLADLEESGFLSTEWDTTVSPPRKIYRITPQGKLYLREILRS 96 (118)
T ss_dssp CCCCCCHHHHHHHHHHTTSEEEEEECSSSSCEEEEEECHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHCCCeEEEeecCCCCCceEEEEChHHHHHHHHHHHH
Confidence 555 567889999999999987642 2456779999999999987643
No 29
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=91.86 E-value=0.13 Score=36.86 Aligned_cols=44 Identities=23% Similarity=0.366 Sum_probs=38.1
Q ss_pred cCCcHHHHHHHhcccccCccceee---eeceeEEEecchhHHHHHhh
Q psy5978 36 DVPNLQVIKTLQSLKSKGWVNEQF---AWRHYYWYITNDGIEKLRGV 79 (159)
Q Consensus 36 ~vpNL~Vik~mqSLkSrGyVke~F---aWrh~Yw~LTneGI~yLR~y 79 (159)
.++.=.|.++++.|..+|||...- .-|..+++||++|.+++.+.
T Consensus 69 ~is~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~~ 115 (154)
T 2eth_A 69 STTKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIFGEI 115 (154)
T ss_dssp TSCHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEEeeCCCCCcceeEEEECHHHHHHHHHH
Confidence 478889999999999999998764 46788999999999998764
No 30
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=91.70 E-value=0.1 Score=36.71 Aligned_cols=44 Identities=14% Similarity=0.141 Sum_probs=37.6
Q ss_pred cCCcHHHHHHHhcccccCccceee---eeceeEEEecchhHHHHHhh
Q psy5978 36 DVPNLQVIKTLQSLKSKGWVNEQF---AWRHYYWYITNDGIEKLRGV 79 (159)
Q Consensus 36 ~vpNL~Vik~mqSLkSrGyVke~F---aWrh~Yw~LTneGI~yLR~y 79 (159)
.++.=.|.++++.|..+|||...- .=|..++.||++|.+++.+.
T Consensus 62 ~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~ 108 (143)
T 3oop_A 62 KKDTPTVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRKETTEL 108 (143)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEC----CCSCEEEECHHHHHHHHHH
T ss_pred CCCHhhHHHHHHHHHHCCCeeccCCCccCceeeeeECHHHHHHHHHH
Confidence 478888999999999999998764 56789999999999998754
No 31
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=91.68 E-value=0.12 Score=36.26 Aligned_cols=44 Identities=16% Similarity=0.211 Sum_probs=35.9
Q ss_pred cCCcHHHHHHHhcccccCccceee---eeceeEEEecchhHHHHHhh
Q psy5978 36 DVPNLQVIKTLQSLKSKGWVNEQF---AWRHYYWYITNDGIEKLRGV 79 (159)
Q Consensus 36 ~vpNL~Vik~mqSLkSrGyVke~F---aWrh~Yw~LTneGI~yLR~y 79 (159)
.++.=.|..+++.|..+|||...- .-|..++.||++|.+.+.+.
T Consensus 61 ~i~~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~ 107 (147)
T 2hr3_A 61 RMRSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNLYGN 107 (147)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHHCCCEeeCCCCCCCCceeeEECHHHHHHHHHH
Confidence 478888999999999999998763 46889999999999888754
No 32
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=91.57 E-value=0.15 Score=35.68 Aligned_cols=69 Identities=13% Similarity=0.168 Sum_probs=49.5
Q ss_pred cchhhHHHHHHHhhhcccEEEeeCCCCCCCCCc-cCCcHHHHHHHhcccccCccceeee---eceeEEEecchhHHHHH
Q psy5978 3 MPKKNRYIIYEYLFKEGVLVAKKDFHAPKHPEL-DVPNLQVIKTLQSLKSKGWVNEQFA---WRHYYWYITNDGIEKLR 77 (159)
Q Consensus 3 ipk~~r~~IYe~LFkeGV~VakKD~~~~~Hpel-~vpNL~Vik~mqSLkSrGyVke~Fa---Wrh~Yw~LTneGI~yLR 77 (159)
+..+.+..|...|. +|-+-. .|.. ..+ .|+.=.|...++.|...|+|+..-. =|..||.||++|.+.+.
T Consensus 11 l~~~~~~~IL~~L~-~~~~~~-~eLa----~~l~~is~~tls~~L~~Le~~GlI~r~~~~~d~r~~~y~LT~~G~~l~~ 83 (107)
T 2hzt_A 11 IGGKWKXVILXHLT-HGKKRT-SELK----RLMPNITQKMLTQQLRELEADGVINRIVYNQVPPKVEYELSEYGRSLEG 83 (107)
T ss_dssp HCSTTHHHHHHHHT-TCCBCH-HHHH----HHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGHH
T ss_pred HcCccHHHHHHHHH-hCCCCH-HHHH----HHhcCCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECccHHHHHH
Confidence 44566777888887 443221 2221 234 5778889999999999999987654 57899999999987654
No 33
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=91.57 E-value=0.16 Score=35.68 Aligned_cols=70 Identities=13% Similarity=0.180 Sum_probs=49.8
Q ss_pred cchhhHHHHHHHhhhcccEEEeeCCCCCCCCCc-cCCcHHHHHHHhcccccCccceeee---eceeEEEecchhHHHHHh
Q psy5978 3 MPKKNRYIIYEYLFKEGVLVAKKDFHAPKHPEL-DVPNLQVIKTLQSLKSKGWVNEQFA---WRHYYWYITNDGIEKLRG 78 (159)
Q Consensus 3 ipk~~r~~IYe~LFkeGV~VakKD~~~~~Hpel-~vpNL~Vik~mqSLkSrGyVke~Fa---Wrh~Yw~LTneGI~yLR~ 78 (159)
+..+.+..|...|.++++-+ .|. ...+ .|..=.|...++.|...|||...-. -|..||.||++|.+.+..
T Consensus 19 l~~~~~~~IL~~L~~~~~~~--~eL----a~~l~~is~~tvs~~L~~Le~~GlI~r~~~~~d~r~~~~~LT~~G~~~~~~ 92 (112)
T 1z7u_A 19 INGKWKLSLMDELFQGTKRN--GEL----MRALDGITQRVLTDRLREMEKDGLVHRESFNELPPRVEYTLTPEGYALYDA 92 (112)
T ss_dssp TCSTTHHHHHHHHHHSCBCH--HHH----HHHSTTCCHHHHHHHHHHHHHHTSEEEEEECCSSCEEEEEECHHHHHHHHH
T ss_pred HcCccHHHHHHHHHhCCCCH--HHH----HHHhccCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECHhHHHHHHH
Confidence 34455667777777533211 222 1234 5788889999999999999987654 588999999999876653
No 34
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=91.56 E-value=0.13 Score=36.18 Aligned_cols=45 Identities=11% Similarity=0.104 Sum_probs=36.4
Q ss_pred cCCcHHHHHHHhcccccCccceee---eeceeEEEecchhHHHHHhhc
Q psy5978 36 DVPNLQVIKTLQSLKSKGWVNEQF---AWRHYYWYITNDGIEKLRGVL 80 (159)
Q Consensus 36 ~vpNL~Vik~mqSLkSrGyVke~F---aWrh~Yw~LTneGI~yLR~yL 80 (159)
.++.=.|..+++.|..+|||...- .-|..|++||++|.+.+.+..
T Consensus 67 ~~~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 114 (150)
T 2rdp_A 67 YLACSTTTDLVDRMERNGLVARVRDEHDRRVVRIRLLEKGERIIEEVI 114 (150)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEECCC---CEEEEECHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHCCCeeecCCCCCcceeEeEECHhHHHHHHHHH
Confidence 488889999999999999998754 468889999999999887543
No 35
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=91.23 E-value=0.16 Score=35.17 Aligned_cols=67 Identities=19% Similarity=0.295 Sum_probs=46.1
Q ss_pred HHHHHHHhhhcccEEEeeCCCCCCCCCccCCcHHHHHHHhcccccCccceee---eeceeEEEecchhHHHHHhh
Q psy5978 8 RYIIYEYLFKEGVLVAKKDFHAPKHPELDVPNLQVIKTLQSLKSKGWVNEQF---AWRHYYWYITNDGIEKLRGV 79 (159)
Q Consensus 8 r~~IYe~LFkeGV~VakKD~~~~~Hpel~vpNL~Vik~mqSLkSrGyVke~F---aWrh~Yw~LTneGI~yLR~y 79 (159)
...|...|.+.|-+- -+|.. ..+.++.=.|..+++.|..+|||...- .-|..|++||++|.+.+.+.
T Consensus 35 ~~~iL~~l~~~~~~~-~~ela----~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~r~~~~~lT~~G~~~~~~~ 104 (139)
T 3bja_A 35 QFGVIQVLAKSGKVS-MSKLI----ENMGCVPSNMTTMIQRMKRDGYVMTEKNPNDQRETLVYLTKKGEETKKQV 104 (139)
T ss_dssp HHHHHHHHHHSCSEE-HHHHH----HHCSSCCTTHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcC-HHHHH----HHHCCChhHHHHHHHHHHHCCCeeeccCCCCCceeEEEECHHHHHHHHHH
Confidence 345666666544322 12221 123467777899999999999998653 36889999999999988754
No 36
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=91.20 E-value=0.16 Score=35.44 Aligned_cols=44 Identities=25% Similarity=0.411 Sum_probs=37.9
Q ss_pred cCCcHHHHHHHhcccccCccceee---eeceeEEEecchhHHHHHhh
Q psy5978 36 DVPNLQVIKTLQSLKSKGWVNEQF---AWRHYYWYITNDGIEKLRGV 79 (159)
Q Consensus 36 ~vpNL~Vik~mqSLkSrGyVke~F---aWrh~Yw~LTneGI~yLR~y 79 (159)
.++.=.|..+++.|..+|||...- .-|..++.||++|.+.+.+.
T Consensus 58 ~~s~~tvs~~l~~L~~~glv~r~~~~~d~r~~~~~lT~~G~~~~~~~ 104 (145)
T 2a61_A 58 GVAKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVIEKV 104 (145)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHCCCeeecCCCCCCceEEEEECHHHHHHHHHH
Confidence 478888999999999999998864 46788999999999988754
No 37
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=91.10 E-value=0.23 Score=35.05 Aligned_cols=47 Identities=17% Similarity=0.317 Sum_probs=38.3
Q ss_pred ccCCcHHHHHHHhcccccCccceeee----eceeEEEecchhHHHHHhhcC
Q psy5978 35 LDVPNLQVIKTLQSLKSKGWVNEQFA----WRHYYWYITNDGIEKLRGVLN 81 (159)
Q Consensus 35 l~vpNL~Vik~mqSLkSrGyVke~Fa----Wrh~Yw~LTneGI~yLR~yLh 81 (159)
+.+..=.|..+++.|...|||...-. =+.-||.||++|.+.|.+...
T Consensus 36 ~~i~~~tly~~L~~Le~~GlI~~~~~~~~~r~r~~y~LT~~G~~~l~~~~~ 86 (108)
T 3l7w_A 36 ASIKESTLYPILKKLEKAGYLSTYTQEHQGRRRKYYHLTDSGEKHLVYLTK 86 (108)
T ss_dssp CCCCHHHHHHHHHHHHHTTSEEEEEEEETTEEEEEEEECHHHHHHHHHHHH
T ss_pred hCCCcChHHHHHHHHHHCCCeEEEeecCCCCcceEEEECHHHHHHHHHHHH
Confidence 45777889999999999999987532 246789999999999987653
No 38
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=91.09 E-value=0.12 Score=35.75 Aligned_cols=44 Identities=23% Similarity=0.372 Sum_probs=37.7
Q ss_pred cCCcHHHHHHHhcccccCcccee---eeeceeEEEecchhHHHHHhh
Q psy5978 36 DVPNLQVIKTLQSLKSKGWVNEQ---FAWRHYYWYITNDGIEKLRGV 79 (159)
Q Consensus 36 ~vpNL~Vik~mqSLkSrGyVke~---FaWrh~Yw~LTneGI~yLR~y 79 (159)
.++.=.|.++++.|..+|||... ..-|..++.||++|.+++.+.
T Consensus 54 ~~s~~tvs~~l~~L~~~glv~~~~~~~d~R~~~~~lT~~G~~~~~~~ 100 (138)
T 3bpv_A 54 HVDKGTIARTLRRLEESGFIEREQDPENRRRYILEVTRRGEEIIPLI 100 (138)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHTHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEEeecCCCCceeEEeeECHhHHHHHHHH
Confidence 47788899999999999999875 346889999999999988754
No 39
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=90.86 E-value=0.12 Score=36.70 Aligned_cols=46 Identities=11% Similarity=0.038 Sum_probs=39.4
Q ss_pred cCCcHHHHHHHhcccccCccce-----eeeeceeEEEecchhHHHHHhhcC
Q psy5978 36 DVPNLQVIKTLQSLKSKGWVNE-----QFAWRHYYWYITNDGIEKLRGVLN 81 (159)
Q Consensus 36 ~vpNL~Vik~mqSLkSrGyVke-----~FaWrh~Yw~LTneGI~yLR~yLh 81 (159)
.++.=.|..+++.|..+|||.. .-.=|.+++.||++|.+++.+...
T Consensus 66 ~~~~~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT~~G~~~~~~~~~ 116 (154)
T 2qww_A 66 IITGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKGEDLSKRSTA 116 (154)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHCCCEEecCcCCCCCCceeEeEECHHHHHHHHHHHh
Confidence 4778889999999999999987 345788999999999999887553
No 40
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=90.73 E-value=0.045 Score=38.01 Aligned_cols=64 Identities=23% Similarity=0.452 Sum_probs=47.5
Q ss_pred hhHHHHHHHhhhcccEEEeeCCCCCCCCCccCCcHHHHHHHhcccccCcccee------eeeceeEEEecchhH
Q psy5978 6 KNRYIIYEYLFKEGVLVAKKDFHAPKHPELDVPNLQVIKTLQSLKSKGWVNEQ------FAWRHYYWYITNDGI 73 (159)
Q Consensus 6 ~~r~~IYe~LFkeGV~VakKD~~~~~Hpel~vpNL~Vik~mqSLkSrGyVke~------FaWrh~Yw~LTneGI 73 (159)
.++..|...|++.|--+...+.. ..++|+.-.|-++++.|.+.|+|... -.|..+||.++.+.|
T Consensus 18 ~~~l~Il~~l~~~g~~~s~~eLa----~~lgvs~~tV~~~L~~L~~~GlV~~~~~~~~~~g~~v~~~~~~~~~i 87 (110)
T 1q1h_A 18 DDVIDVLRILLDKGTEMTDEEIA----NQLNIKVNDVRKKLNLLEEQGFVSYRKTRDKDSGWFIYYWKPNIDQI 87 (110)
T ss_dssp STTHHHHHHHHHHCSCBCHHHHH----HTTTSCHHHHHHHHHHHHHHTSCEEEEEC---CCCCEEEEECTHHHH
T ss_pred hHHHHHHHHHHHcCCCCCHHHHH----HHHCcCHHHHHHHHHHHHHCCCEEEEecccCCCceEEEEeecCHHHH
Confidence 46678888888776212223321 24568888999999999999999754 578888999999877
No 41
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=90.69 E-value=0.19 Score=35.09 Aligned_cols=44 Identities=18% Similarity=0.172 Sum_probs=37.0
Q ss_pred cCCcHHHHHHHhcccccCccceee---eeceeEEEecchhHHHHHhh
Q psy5978 36 DVPNLQVIKTLQSLKSKGWVNEQF---AWRHYYWYITNDGIEKLRGV 79 (159)
Q Consensus 36 ~vpNL~Vik~mqSLkSrGyVke~F---aWrh~Yw~LTneGI~yLR~y 79 (159)
.++.=.|..+++.|..+|||...- .-|..|..||++|.+.+.+.
T Consensus 58 ~~~~~tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT~~G~~~~~~~ 104 (139)
T 3eco_A 58 QRTGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLVEAF 104 (139)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEECCC--CCEEEEECHHHHHHHHHH
T ss_pred CCCcccHHHHHHHHHHCCCEeecCCCCCCCeeeeEECHHHHHHHHHH
Confidence 478888999999999999998764 47889999999999998754
No 42
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=90.65 E-value=0.19 Score=34.90 Aligned_cols=45 Identities=22% Similarity=0.214 Sum_probs=38.3
Q ss_pred cCCcHHHHHHHhcccccCccceee---eeceeEEEecchhHHHHHhhc
Q psy5978 36 DVPNLQVIKTLQSLKSKGWVNEQF---AWRHYYWYITNDGIEKLRGVL 80 (159)
Q Consensus 36 ~vpNL~Vik~mqSLkSrGyVke~F---aWrh~Yw~LTneGI~yLR~yL 80 (159)
.++.=.|.++++.|..+|||...- .-|..|++||++|.+++.+..
T Consensus 59 ~~~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 106 (138)
T 1jgs_A 59 SVDLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAICEQCH 106 (138)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHCCCEEecCCcccCceeEeEEChhHHHHHHHHH
Confidence 478888999999999999998753 468889999999999987644
No 43
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=90.61 E-value=0.3 Score=35.11 Aligned_cols=47 Identities=17% Similarity=0.383 Sum_probs=38.1
Q ss_pred ccCCcHHHHHHHhcccccCccceee-----eeceeEEEecchhHHHHHhhcC
Q psy5978 35 LDVPNLQVIKTLQSLKSKGWVNEQF-----AWRHYYWYITNDGIEKLRGVLN 81 (159)
Q Consensus 35 l~vpNL~Vik~mqSLkSrGyVke~F-----aWrh~Yw~LTneGI~yLR~yLh 81 (159)
+.+..=.|..+++.|...|+|.... .=+--||.||++|.+.|.+.+.
T Consensus 43 ~~i~~gtly~~L~rLe~~GlI~~~~~~~~~~~~rk~Y~LT~~G~~~l~~~~~ 94 (116)
T 3f8b_A 43 MELNEATLYTIFKRLEKDGIISSYWGDESQGGRRKYYRLTEIGHENMRLAFE 94 (116)
T ss_dssp CCCCHHHHHHHHHHHHHTTSEEEEEEC----CCEEEEEECHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHCCCEEEEeeccCCCCCceEEEECHHHHHHHHHHHH
Confidence 4577778999999999999998653 1356788999999999987653
No 44
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=90.57 E-value=0.19 Score=35.11 Aligned_cols=44 Identities=16% Similarity=0.231 Sum_probs=37.9
Q ss_pred cCCcHHHHHHHhcccccCccceee---eeceeEEEecchhHHHHHhh
Q psy5978 36 DVPNLQVIKTLQSLKSKGWVNEQF---AWRHYYWYITNDGIEKLRGV 79 (159)
Q Consensus 36 ~vpNL~Vik~mqSLkSrGyVke~F---aWrh~Yw~LTneGI~yLR~y 79 (159)
.++.=.|..+++.|..+|||...- .-|..|..||++|.+++.+.
T Consensus 54 ~~s~~~vs~~l~~Le~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~~ 100 (144)
T 1lj9_A 54 KVDRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVYPII 100 (144)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHH
T ss_pred CCCHhHHHHHHHHHHHCCCEEeecCCCCCceeeeEEChhHHHHHHHH
Confidence 477888999999999999998765 46889999999999988754
No 45
>2dql_A PEX protein; circadian clock associated protein, circadian clock protein; 1.70A {Anabaena SP}
Probab=90.56 E-value=0.26 Score=35.50 Aligned_cols=46 Identities=2% Similarity=0.086 Sum_probs=37.7
Q ss_pred ccCCcHHHHHHHhcccccCccceeee------eceeEEEecchhHHHHHhhc
Q psy5978 35 LDVPNLQVIKTLQSLKSKGWVNEQFA------WRHYYWYITNDGIEKLRGVL 80 (159)
Q Consensus 35 l~vpNL~Vik~mqSLkSrGyVke~Fa------Wrh~Yw~LTneGI~yLR~yL 80 (159)
+++..=.|..+|+.|...|+|...-. =+--||.||++|.+.|.+++
T Consensus 52 ~~is~gtLY~~L~rLe~~GlI~~~~~~~~~~~~~rk~Y~LT~~G~~~l~~~~ 103 (115)
T 2dql_A 52 YRLSDTVLYSAIKFLEDNRAITGYWKKLEGRGRPRRMYQVSPEWQHQAEDLA 103 (115)
T ss_dssp EECCHHHHHHHHHHHHHTTSEEEEEECCTTCSSCEEEEEECGGGHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHCCCEEEEeeecCCCCCCcEEEEECHHHHHHHHHHH
Confidence 45777888999999999999986532 13579999999999998875
No 46
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=90.35 E-value=0.3 Score=36.71 Aligned_cols=46 Identities=17% Similarity=0.393 Sum_probs=37.3
Q ss_pred cCCcHHHHHHHhcccccCccceeeee-----ceeEEEecchhHHHHHhhcC
Q psy5978 36 DVPNLQVIKTLQSLKSKGWVNEQFAW-----RHYYWYITNDGIEKLRGVLN 81 (159)
Q Consensus 36 ~vpNL~Vik~mqSLkSrGyVke~FaW-----rh~Yw~LTneGI~yLR~yLh 81 (159)
.|..=.|..+|+.|...|||...-.= +--||.||++|.+.|.+.+.
T Consensus 73 ~is~gtLy~~L~rLE~~GlI~~~~~~~~~~~~rk~Y~LT~~G~~~l~~~~~ 123 (145)
T 1xma_A 73 VIKETTLYSAFARLEKNGYIKSYYGEETQGKRRTYYRITPEGIKYYKQKCE 123 (145)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEEEECHHHHHHHHHHHH
T ss_pred CcChhHHHHHHHHHHHCCCEEEEEeccCCCCCeEEEEECHHHHHHHHHHHH
Confidence 46777889999999999999875421 45677999999999998754
No 47
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=90.33 E-value=0.22 Score=36.10 Aligned_cols=46 Identities=20% Similarity=0.263 Sum_probs=37.0
Q ss_pred CCcHHHHHHHhcccccCccceeee-----eceeEEEecchhHHHHHhhcCC
Q psy5978 37 VPNLQVIKTLQSLKSKGWVNEQFA-----WRHYYWYITNDGIEKLRGVLNI 82 (159)
Q Consensus 37 vpNL~Vik~mqSLkSrGyVke~Fa-----Wrh~Yw~LTneGI~yLR~yLhL 82 (159)
++.=.|..+++.|...|||..... =+--||.||++|.++|.+++..
T Consensus 45 i~~gtly~~L~~Le~~GlI~~~~~~~~~~~~rk~Y~lT~~G~~~l~~~~~~ 95 (117)
T 3elk_A 45 LPQGSIYILLKTMKERGFVISESSVNEKGQQLTVYHITDAGKKFLCDHSQA 95 (117)
T ss_dssp CCTTHHHHHHHHHHHHTSEEEEEEEC-CCCEEEEEEECHHHHHHHHHTSTT
T ss_pred CCcchHHHHHHHHHHCCCEEEEeeecCCCCCceEEEECHHHHHHHHHHHHH
Confidence 455678999999999999987532 2456889999999999987755
No 48
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=90.32 E-value=0.18 Score=35.09 Aligned_cols=44 Identities=18% Similarity=0.166 Sum_probs=37.9
Q ss_pred cCCcHHHHHHHhcccccCccceee---eeceeEEEecchhHHHHHhh
Q psy5978 36 DVPNLQVIKTLQSLKSKGWVNEQF---AWRHYYWYITNDGIEKLRGV 79 (159)
Q Consensus 36 ~vpNL~Vik~mqSLkSrGyVke~F---aWrh~Yw~LTneGI~yLR~y 79 (159)
.++.=.|..+++.|..+|||...- .=|..+.+||++|.+++.+.
T Consensus 63 ~~s~~~vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~ 109 (146)
T 2fbh_A 63 GVEGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLIADI 109 (146)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHHHHH
T ss_pred CCChhhHHHHHHHHHHCCCeeecCCCcccCeeeeEECHhHHHHHHHH
Confidence 478888999999999999998764 36888999999999988764
No 49
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=90.06 E-value=0.22 Score=35.75 Aligned_cols=66 Identities=17% Similarity=0.117 Sum_probs=47.0
Q ss_pred HHHHHHhhhcccEEEeeCCCCCCCCCccCCcHHHHHHHhcccccCccceee---eeceeEEEecchhHHHHHhh
Q psy5978 9 YIIYEYLFKEGVLVAKKDFHAPKHPELDVPNLQVIKTLQSLKSKGWVNEQF---AWRHYYWYITNDGIEKLRGV 79 (159)
Q Consensus 9 ~~IYe~LFkeGV~VakKD~~~~~Hpel~vpNL~Vik~mqSLkSrGyVke~F---aWrh~Yw~LTneGI~yLR~y 79 (159)
..|...|.+.|-+- .+|.. ..+.|+.=.|..+++.|..+|||...- .-|..++.||++|.+++.+.
T Consensus 55 ~~iL~~l~~~~~~t-~~ela----~~l~is~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~~ 123 (162)
T 3cjn_A 55 MRALAILSAKDGLP-IGTLG----IFAVVEQSTLSRALDGLQADGLVRREVDSDDQRSSRVYLTPAGRAVYDRL 123 (162)
T ss_dssp HHHHHHHHHSCSEE-HHHHH----HHHTCCHHHHHHHHHHHHHTTSEEEEEC--CCSSEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCC-HHHHH----HHHCCChhHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHHH
Confidence 45666666544322 12221 123588888999999999999998754 57889999999999988764
No 50
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=89.67 E-value=0.18 Score=34.06 Aligned_cols=44 Identities=18% Similarity=0.212 Sum_probs=36.7
Q ss_pred cCCcHH-HHHHHhcccccCccce-eeeeceeEEEecchhHHHHHhh
Q psy5978 36 DVPNLQ-VIKTLQSLKSKGWVNE-QFAWRHYYWYITNDGIEKLRGV 79 (159)
Q Consensus 36 ~vpNL~-Vik~mqSLkSrGyVke-~FaWrh~Yw~LTneGI~yLR~y 79 (159)
.++.=. |..+++.|..+|||+. ...-|..++.||++|.+.+.+.
T Consensus 41 ~is~~t~vs~~l~~Le~~Glv~~~~~drR~~~~~LT~~G~~~~~~~ 86 (95)
T 2pg4_A 41 GVSEKTFFMGLKDRLIRAGLVKEETLSYRVKTLKLTEKGRRLAECL 86 (95)
T ss_dssp CCCHHHHHTTHHHHHHHTTSEEEEEEETTEEEEEECHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHCCCeecCCCCCCeEEEEECHhHHHHHHHH
Confidence 488888 9999999999999982 2345788999999999988754
No 51
>2co5_A Viral protein F93; viral protein-winged helix complex, winged helix, DNA-bindin WHTH, disulfide bond, STIV; 2.2A {Sulfolobus turreted icosahedral virus} SCOP: a.4.5.48
Probab=89.57 E-value=0.21 Score=35.73 Aligned_cols=47 Identities=15% Similarity=0.226 Sum_probs=38.1
Q ss_pred cCCcHHHHHHHhcccccCccceeeeeceeEEEecchhHHHHHhhcCC
Q psy5978 36 DVPNLQVIKTLQSLKSKGWVNEQFAWRHYYWYITNDGIEKLRGVLNI 82 (159)
Q Consensus 36 ~vpNL~Vik~mqSLkSrGyVke~FaWrh~Yw~LTneGI~yLR~yLhL 82 (159)
++..=.+.-+++.|...|||...-.=+--||.||++|.+.|.+.+.-
T Consensus 41 ~is~GtlYp~L~rLe~~GlI~~~~~~~rk~Y~iT~~Gr~~l~~~~~~ 87 (99)
T 2co5_A 41 DISDGVLYPLIDSLIDDKILREEEAPDGKVLFLTEKGMKEFEELHEF 87 (99)
T ss_dssp BCCHHHHHHHHHHHHHTTSEEEECCTTSCEEEECHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHCCCEEEeeCCCcEEEEECHHHHHHHHHHHHh
Confidence 46677888999999999999876322456889999999999988754
No 52
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=89.53 E-value=0.17 Score=35.13 Aligned_cols=44 Identities=11% Similarity=0.064 Sum_probs=37.2
Q ss_pred cCCcHHHHHHHhcccccCccceeee---eceeEEEecchhHHHHHhh
Q psy5978 36 DVPNLQVIKTLQSLKSKGWVNEQFA---WRHYYWYITNDGIEKLRGV 79 (159)
Q Consensus 36 ~vpNL~Vik~mqSLkSrGyVke~Fa---Wrh~Yw~LTneGI~yLR~y 79 (159)
.|+.=.|..+++.|..+|||...-. -|..+..||++|.+.+.+.
T Consensus 61 ~~~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~i~lT~~G~~~~~~~ 107 (141)
T 3bro_A 61 SIKSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLETII 107 (141)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTHHHH
T ss_pred CCCcchHHHHHHHHHHCCCEEeeCCCcCCCeeeeEECHHHHHHHHHH
Confidence 4788889999999999999987653 6788999999998877653
No 53
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=89.45 E-value=0.14 Score=35.97 Aligned_cols=67 Identities=16% Similarity=0.240 Sum_probs=48.1
Q ss_pred HHHHHHHhhhcccEEEeeCCCCCCCCCccCCcHHHHHHHhcccccCccceeee---eceeEEEecchhHHHHHhh
Q psy5978 8 RYIIYEYLFKEGVLVAKKDFHAPKHPELDVPNLQVIKTLQSLKSKGWVNEQFA---WRHYYWYITNDGIEKLRGV 79 (159)
Q Consensus 8 r~~IYe~LFkeGV~VakKD~~~~~Hpel~vpNL~Vik~mqSLkSrGyVke~Fa---Wrh~Yw~LTneGI~yLR~y 79 (159)
...|...|...|-+- .+|.. ..+.++.=.|.++++.|..+|||...-. -|..|++||++|.+.+.+.
T Consensus 42 ~~~iL~~l~~~~~~~-~~~la----~~l~~~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~LT~~G~~~~~~~ 111 (147)
T 1z91_A 42 QYLALLLLWEHETLT-VKKMG----EQLYLDSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKEKA 111 (147)
T ss_dssp HHHHHHHHHHHSEEE-HHHHH----HTTTCCHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGGGGT
T ss_pred HHHHHHHHHHCCCCC-HHHHH----HHHCCCcCcHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHHHH
Confidence 345666666655322 23322 1245788889999999999999987643 6889999999999887753
No 54
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=89.31 E-value=0.2 Score=35.64 Aligned_cols=44 Identities=16% Similarity=0.125 Sum_probs=35.2
Q ss_pred cCCcHHHHHHHhcccccCccceee---eeceeEEEecchhHHHHHhh
Q psy5978 36 DVPNLQVIKTLQSLKSKGWVNEQF---AWRHYYWYITNDGIEKLRGV 79 (159)
Q Consensus 36 ~vpNL~Vik~mqSLkSrGyVke~F---aWrh~Yw~LTneGI~yLR~y 79 (159)
.|+.=.|..+++.|..+|||...- .=|..++.||++|.+++.+.
T Consensus 72 ~~s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~ 118 (153)
T 2pex_A 72 YLDSATLTPLLKRLQAAGLVTRTRAASDERQVIIALTETGRALRSKA 118 (153)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHGGGGS
T ss_pred CCCcccHHHHHHHHHHCCCEeecCCcccCCeeEeeECHHHHHHHHHH
Confidence 488888999999999999998764 45788999999999988754
No 55
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=89.23 E-value=0.21 Score=35.60 Aligned_cols=44 Identities=14% Similarity=0.203 Sum_probs=35.6
Q ss_pred cCCcHHHHHHHhcccccCccceee---eeceeEEEecchhHHHHHhh
Q psy5978 36 DVPNLQVIKTLQSLKSKGWVNEQF---AWRHYYWYITNDGIEKLRGV 79 (159)
Q Consensus 36 ~vpNL~Vik~mqSLkSrGyVke~F---aWrh~Yw~LTneGI~yLR~y 79 (159)
.++.=.|..+++.|..+|||...- .-|..+++||++|.+.+.+.
T Consensus 68 ~i~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~~ 114 (155)
T 3cdh_A 68 LMEQSRMTRIVDQMDARGLVTRVADAKDKRRVRVRLTDDGRALAESL 114 (155)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEECC------CCCEEECHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEEeccCCCcCCeeEeEECHHHHHHHHHH
Confidence 478888999999999999998653 46778899999999988764
No 56
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=89.15 E-value=0.2 Score=35.35 Aligned_cols=44 Identities=16% Similarity=0.096 Sum_probs=35.5
Q ss_pred cCCcHHHHHHHhcccccCccceee---eeceeEEEecchhHHHHHhh
Q psy5978 36 DVPNLQVIKTLQSLKSKGWVNEQF---AWRHYYWYITNDGIEKLRGV 79 (159)
Q Consensus 36 ~vpNL~Vik~mqSLkSrGyVke~F---aWrh~Yw~LTneGI~yLR~y 79 (159)
.++.=.|.++++.|..+|||...- .=|..+.+||++|.+.+.+.
T Consensus 61 ~~~~~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~ 107 (140)
T 3hsr_A 61 FLDSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIKSPL 107 (140)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHTHHHH
T ss_pred CCChhhHHHHHHHHHHCCCeEecCCCCCcceeeeeEChHHHHHHHHH
Confidence 478889999999999999999764 45888999999999988764
No 57
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=89.13 E-value=0.15 Score=36.56 Aligned_cols=44 Identities=14% Similarity=0.274 Sum_probs=33.9
Q ss_pred cCCcHHHHHHHhcccccCccceee---eeceeEEEecchhHHHHHhh
Q psy5978 36 DVPNLQVIKTLQSLKSKGWVNEQF---AWRHYYWYITNDGIEKLRGV 79 (159)
Q Consensus 36 ~vpNL~Vik~mqSLkSrGyVke~F---aWrh~Yw~LTneGI~yLR~y 79 (159)
.|+.=.|.++++.|..+|||...- .-|..++.||++|.+++.+.
T Consensus 74 ~is~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~ 120 (162)
T 2fa5_A 74 AMDKVAVSRAVARLLERGFIRRETHGDDRRRSMLALSPAGRQVYETV 120 (162)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEC---------CCCEECHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEeeecCCCCCCeeEEEECHHHHHHHHHH
Confidence 478888999999999999998654 46778899999999988754
No 58
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=89.08 E-value=0.28 Score=34.70 Aligned_cols=45 Identities=20% Similarity=0.219 Sum_probs=38.2
Q ss_pred ccCCcHHHHHHHhcccccCccceeee---eceeEEEecchhHHHHHhh
Q psy5978 35 LDVPNLQVIKTLQSLKSKGWVNEQFA---WRHYYWYITNDGIEKLRGV 79 (159)
Q Consensus 35 l~vpNL~Vik~mqSLkSrGyVke~Fa---Wrh~Yw~LTneGI~yLR~y 79 (159)
+.++.=.|..+++.|..+|||...-. -|..++.||++|.+++.+.
T Consensus 61 l~~s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~ 108 (155)
T 1s3j_A 61 MEVKPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKFEEV 108 (155)
T ss_dssp HTSCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHCCCEeecCCCCCCceEEEEECHHHHHHHHHH
Confidence 35888899999999999999987643 5788999999999988754
No 59
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=89.04 E-value=0.18 Score=35.54 Aligned_cols=44 Identities=18% Similarity=0.207 Sum_probs=37.5
Q ss_pred cCCcHHHHHHHhcccccCccceee---eeceeEEEecchhHHHHHhh
Q psy5978 36 DVPNLQVIKTLQSLKSKGWVNEQF---AWRHYYWYITNDGIEKLRGV 79 (159)
Q Consensus 36 ~vpNL~Vik~mqSLkSrGyVke~F---aWrh~Yw~LTneGI~yLR~y 79 (159)
.++.=.|..+++.|..+|||...- .-|..|+.||++|.+++.+.
T Consensus 56 ~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~ 102 (145)
T 3g3z_A 56 SLPKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYAAPL 102 (145)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEeeccCCCCCceeeeeEChhHHHHHHHH
Confidence 478888999999999999998643 45889999999999988654
No 60
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=88.96 E-value=0.29 Score=35.79 Aligned_cols=44 Identities=16% Similarity=0.139 Sum_probs=37.9
Q ss_pred cCCcHHHHHHHhcccccCccceeee---eceeEEEecchhHHHHHhh
Q psy5978 36 DVPNLQVIKTLQSLKSKGWVNEQFA---WRHYYWYITNDGIEKLRGV 79 (159)
Q Consensus 36 ~vpNL~Vik~mqSLkSrGyVke~Fa---Wrh~Yw~LTneGI~yLR~y 79 (159)
.++.=.|..+++.|..+|||...-. -|..++.||++|.+.+.+.
T Consensus 70 ~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~~~ 116 (168)
T 2nyx_A 70 GVQPSATGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRDVVRQV 116 (168)
T ss_dssp TSCHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHHHH
Confidence 4888889999999999999987543 7889999999999887653
No 61
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=88.92 E-value=0.34 Score=35.12 Aligned_cols=48 Identities=19% Similarity=0.131 Sum_probs=38.1
Q ss_pred cCCcHHHHHHHhcccccCccceeee-----eceeEEEecchhHHHHHhhcCCC
Q psy5978 36 DVPNLQVIKTLQSLKSKGWVNEQFA-----WRHYYWYITNDGIEKLRGVLNIP 83 (159)
Q Consensus 36 ~vpNL~Vik~mqSLkSrGyVke~Fa-----Wrh~Yw~LTneGI~yLR~yLhLP 83 (159)
+|..=.|..+++.|...|+|..... =+--||.||++|.++|.+.+...
T Consensus 41 ~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~~~l~~~~~~~ 93 (117)
T 4esf_A 41 EVVEGTVYTILVRLEKKKLVNIEKKPSDMGPPRKFYSLNEAGRQELELFWKKW 93 (117)
T ss_dssp TCCHHHHHHHHHHHHHTTCEEEEEEC-----CEEEEEECHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHCCCEEEEeecCCCCCCceEEEECHHHHHHHHHHHHHH
Confidence 4666789999999999999987631 13568899999999999876543
No 62
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=88.80 E-value=0.31 Score=35.03 Aligned_cols=44 Identities=20% Similarity=0.317 Sum_probs=36.9
Q ss_pred cCCcHHHHHHHhcccccCccceee---eeceeEEEecchhHHHHHhh
Q psy5978 36 DVPNLQVIKTLQSLKSKGWVNEQF---AWRHYYWYITNDGIEKLRGV 79 (159)
Q Consensus 36 ~vpNL~Vik~mqSLkSrGyVke~F---aWrh~Yw~LTneGI~yLR~y 79 (159)
.|+.=.|.++++.|..+|||...- .-|..+.+||++|.+.+.+.
T Consensus 75 ~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~ 121 (159)
T 3s2w_A 75 KIDKGTTARAIQKLVDEGYVFRQRDEKDRRSYRVFLTEKGKKLEPDM 121 (159)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEECC---CCEEEEECHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEEEecCCCCCCeeEEEECHHHHHHHHHH
Confidence 478888999999999999998765 56788999999999988764
No 63
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=88.79 E-value=0.39 Score=34.93 Aligned_cols=45 Identities=16% Similarity=0.186 Sum_probs=36.4
Q ss_pred cCCcHHHHHHHhcccccCccceeee---eceeEEEecchhHHHHHhhc
Q psy5978 36 DVPNLQVIKTLQSLKSKGWVNEQFA---WRHYYWYITNDGIEKLRGVL 80 (159)
Q Consensus 36 ~vpNL~Vik~mqSLkSrGyVke~Fa---Wrh~Yw~LTneGI~yLR~yL 80 (159)
.|..=.|..+++.|..+|||...-. =|..+.+||++|.+.+.+..
T Consensus 73 ~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~~ 120 (168)
T 3u2r_A 73 ISRAPDITRLIDRLDDRGLVLRTRKPENRRVVEVALTDAGLKLLKDLE 120 (168)
T ss_dssp ---CTHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHHCCCEeecCCCCCCCeeEeEECHHHHHHHHHHH
Confidence 4777789999999999999987654 68889999999999887644
No 64
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=88.78 E-value=0.25 Score=34.87 Aligned_cols=44 Identities=14% Similarity=0.292 Sum_probs=37.6
Q ss_pred cCCcHHHHHHHhcccccCccceeee---eceeEEEecchhHHHHHhh
Q psy5978 36 DVPNLQVIKTLQSLKSKGWVNEQFA---WRHYYWYITNDGIEKLRGV 79 (159)
Q Consensus 36 ~vpNL~Vik~mqSLkSrGyVke~Fa---Wrh~Yw~LTneGI~yLR~y 79 (159)
.++.=.|..+++.|..+|||...-. =|..++.||++|.+++.+.
T Consensus 65 ~~~~~~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~~ 111 (152)
T 3bj6_A 65 QMKRQYISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGEAIITAI 111 (152)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCeeecCCcccccceeeEEChhhHHHHHHH
Confidence 4788889999999999999988653 6788999999999887754
No 65
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=88.75 E-value=0.27 Score=36.19 Aligned_cols=44 Identities=18% Similarity=0.269 Sum_probs=34.9
Q ss_pred cCCcHHHHHHHhcccccCccceee---eeceeEEEecchhHHHHHhh
Q psy5978 36 DVPNLQVIKTLQSLKSKGWVNEQF---AWRHYYWYITNDGIEKLRGV 79 (159)
Q Consensus 36 ~vpNL~Vik~mqSLkSrGyVke~F---aWrh~Yw~LTneGI~yLR~y 79 (159)
.|..=.|..+++.|..+|||...- .-|..+.+||++|.+.+.+.
T Consensus 79 ~i~~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~ 125 (166)
T 3deu_A 79 GIEQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLIAEM 125 (166)
T ss_dssp TSCHHHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHHHHH
T ss_pred CCCHhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEECHHHHHHHHHH
Confidence 488888999999999999998765 56789999999999988764
No 66
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=88.63 E-value=0.39 Score=34.82 Aligned_cols=46 Identities=17% Similarity=0.273 Sum_probs=37.0
Q ss_pred cCCcHHHHHHHhcccccCccceeee-----eceeEEEecchhHHHHHhhcC
Q psy5978 36 DVPNLQVIKTLQSLKSKGWVNEQFA-----WRHYYWYITNDGIEKLRGVLN 81 (159)
Q Consensus 36 ~vpNL~Vik~mqSLkSrGyVke~Fa-----Wrh~Yw~LTneGI~yLR~yLh 81 (159)
++..=.+..+++.|...|+|..... =+--||.||++|.++|.+.+.
T Consensus 43 ~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~lT~~G~~~l~~~~~ 93 (116)
T 3hhh_A 43 EIVEGTVYTILLRLEKNQWVIAEKKPSEKGPMRKFYRLTSSGEAELADFWQ 93 (116)
T ss_dssp SCCHHHHHHHHHHHHHTTSEEEEEEECC--CEEEEEEECHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHCCCEEEEeeecCCCCCceEEEECHHHHHHHHHHHH
Confidence 4677789999999999999986531 135688999999999987654
No 67
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=88.60 E-value=0.19 Score=35.90 Aligned_cols=44 Identities=20% Similarity=0.290 Sum_probs=33.8
Q ss_pred cCCcHHHHHHHhcccccCccceee---eeceeEEEecchhHHHHHhh
Q psy5978 36 DVPNLQVIKTLQSLKSKGWVNEQF---AWRHYYWYITNDGIEKLRGV 79 (159)
Q Consensus 36 ~vpNL~Vik~mqSLkSrGyVke~F---aWrh~Yw~LTneGI~yLR~y 79 (159)
.++.=.|..+++.|..+|||...- .-|..|.+||++|.+++.+.
T Consensus 73 ~i~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~~ 119 (160)
T 3boq_A 73 KVTNGNVSGLVNRLIKDGMVVKAMSADDRRSFSAKLTDAGLTTFKQA 119 (160)
T ss_dssp SSCCSCHHHHHHHHHHHTSEEEC--------CEEEECHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHHCCCEEeecCCCCCCeEEEEEChhHHHHHHHH
Confidence 467777889999999999998753 56889999999999988754
No 68
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=88.58 E-value=0.35 Score=33.99 Aligned_cols=44 Identities=23% Similarity=0.170 Sum_probs=37.9
Q ss_pred cCCcHHHHHHHhcccccCccceee---eeceeEEEecchhHHHHHhh
Q psy5978 36 DVPNLQVIKTLQSLKSKGWVNEQF---AWRHYYWYITNDGIEKLRGV 79 (159)
Q Consensus 36 ~vpNL~Vik~mqSLkSrGyVke~F---aWrh~Yw~LTneGI~yLR~y 79 (159)
.++.=.|..+++.|..+|||...- .=|..+..||++|.+.+.+.
T Consensus 61 ~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~ 107 (144)
T 3f3x_A 61 FVTQSAITAAVDKLEAKGLVRRIRDSKDRRIVIVEITPKGRQVLLEA 107 (144)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHHCCCEEeccCCCCCceEEEEECHHHHHHHHHH
Confidence 478888999999999999998764 46889999999999988754
No 69
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=88.54 E-value=0.4 Score=31.63 Aligned_cols=69 Identities=22% Similarity=0.306 Sum_probs=49.3
Q ss_pred hhHHHHHHHhhhcccEEEeeCCCCCCCCCccCCcHHHHHHHhcccccCccceeee--eceeEEEecchhHHHHHhh
Q psy5978 6 KNRYIIYEYLFKEGVLVAKKDFHAPKHPELDVPNLQVIKTLQSLKSKGWVNEQFA--WRHYYWYITNDGIEKLRGV 79 (159)
Q Consensus 6 ~~r~~IYe~LFkeGV~VakKD~~~~~Hpel~vpNL~Vik~mqSLkSrGyVke~Fa--Wrh~Yw~LTneGI~yLR~y 79 (159)
..+..|+..|.++|-+-+ +|. -..+.++.=.|..+++.|..+|+|...-. -|..|.+||++|.+.+...
T Consensus 20 ~~~~~il~~l~~~~~~s~-~el----a~~l~is~~tv~~~l~~L~~~glv~~~~~~~~r~~~~~~t~~g~~~~~~~ 90 (109)
T 1sfx_A 20 PSDVRIYSLLLERGGMRV-SEI----ARELDLSARFVRDRLKVLLKRGFVRREIVEKGWVGYIYSAEKPEKVLKEF 90 (109)
T ss_dssp HHHHHHHHHHHHHCCBCH-HHH----HHHHTCCHHHHHHHHHHHHHTTSEEEEEEESSSEEEEEEECCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCH-HHH----HHHHCCCHHHHHHHHHHHHHCCCEEEEeecCCceEEEEecCcHHHHHHHH
Confidence 456678888876543211 111 11235888899999999999999987553 6678899999999887654
No 70
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=88.35 E-value=0.25 Score=37.54 Aligned_cols=50 Identities=20% Similarity=0.260 Sum_probs=39.3
Q ss_pred cCCcHHHHHHHhcccccCccceeeee-----ceeEEEecchhHHHHHhhcCCCCC
Q psy5978 36 DVPNLQVIKTLQSLKSKGWVNEQFAW-----RHYYWYITNDGIEKLRGVLNIPDE 85 (159)
Q Consensus 36 ~vpNL~Vik~mqSLkSrGyVke~FaW-----rh~Yw~LTneGI~yLR~yLhLP~e 85 (159)
++..=+|..+++.|...|+|...-.= +--+|.||++|.+.|.+++.-|.+
T Consensus 34 ~~s~~~ly~~L~~Le~~GlI~~~~~~~~~~~~r~~Y~lT~~G~~~l~~~~~~~~~ 88 (179)
T 1yg2_A 34 KASHQQVYRELNKMGEQGLVTCVLEPQEGKPDRKVYSITQAGRSALGEWFDQPTA 88 (179)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEECCC---------CEEECHHHHHHHHHHHHSCCC
T ss_pred CCCcCcHHHHHHHHHHCCCeEEEeecCCCCCCceEEEeChHHHHHHHHHHhCccc
Confidence 47778999999999999999864321 345669999999999999988754
No 71
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=88.23 E-value=0.31 Score=35.17 Aligned_cols=46 Identities=17% Similarity=0.182 Sum_probs=38.4
Q ss_pred ccCCcHHHHHHHhcccccCccceeee---eceeEEEecchhHHHHHhhc
Q psy5978 35 LDVPNLQVIKTLQSLKSKGWVNEQFA---WRHYYWYITNDGIEKLRGVL 80 (159)
Q Consensus 35 l~vpNL~Vik~mqSLkSrGyVke~Fa---Wrh~Yw~LTneGI~yLR~yL 80 (159)
+.|+.=.|..+++.|..+|||...-. -|-.+.+||++|.+.+.+..
T Consensus 77 l~~~~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~~ 125 (161)
T 3e6m_A 77 GVMEQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKLAEIS 125 (161)
T ss_dssp TTCCHHHHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeECHHHHHHHHHHH
Confidence 35788889999999999999987643 67899999999999887643
No 72
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=87.55 E-value=0.11 Score=47.40 Aligned_cols=49 Identities=20% Similarity=0.337 Sum_probs=0.0
Q ss_pred cCCcHHHHHHHhcccccC-ccceeeeeceeEEEecchhHHHHHhhcCCCCCCC
Q psy5978 36 DVPNLQVIKTLQSLKSKG-WVNEQFAWRHYYWYITNDGIEKLRGVLNIPDEIV 87 (159)
Q Consensus 36 ~vpNL~Vik~mqSLkSrG-yVke~FaWrh~Yw~LTneGI~yLR~yLhLP~eiV 87 (159)
.++--.|+.++.||.|+| +|+-.-- -.-+|.||+||.+|+. -+||+..|
T Consensus 31 ~~~~~~v~~~~~~L~~~~~~v~~~~~-~~~~~~Lt~eg~~~~~--~G~pE~~~ 80 (508)
T 3l4g_A 31 GMEHQAVVGAVKSLQALGEVIEAELR-STKHWELTAEGEEIAR--EGSHEARV 80 (508)
T ss_dssp -----------------------------------------------------
T ss_pred CCCHHHHHHHHHHHHhCCCeEEEEEE-EEEEEEECHHHHHHHH--cCCHHHHH
Confidence 477788999999999998 7753222 3457899999999998 46776544
No 73
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=87.54 E-value=0.35 Score=33.45 Aligned_cols=70 Identities=10% Similarity=0.167 Sum_probs=44.3
Q ss_pred HHHHHHHhhhcccEEEeeCCCCCCCCCccCCcHHHHHHHhcccccCccceee-eeceeEEEecchhHHHHHh
Q psy5978 8 RYIIYEYLFKEGVLVAKKDFHAPKHPELDVPNLQVIKTLQSLKSKGWVNEQF-AWRHYYWYITNDGIEKLRG 78 (159)
Q Consensus 8 r~~IYe~LFkeGV~VakKD~~~~~Hpel~vpNL~Vik~mqSLkSrGyVke~F-aWrh~Yw~LTneGI~yLR~ 78 (159)
...|...|.++|-+-+ +|..--..-+.+++.=.|..+++.|..+|||...- .=+..|..||++|.+.+.+
T Consensus 12 ~~~vL~~l~~~~~~t~-~ela~~l~~~~~~s~~tv~~~l~~L~~~Glv~r~~~~rr~~~~~lT~~g~~~~~~ 82 (123)
T 1okr_A 12 EWEVMNIIWMKKYASA-NNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKKDNKIFQYYSLVEESDIKYKT 82 (123)
T ss_dssp HHHHHHHHHHHSSEEH-HHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEEEETTEEEEEESSCHHHHHHHH
T ss_pred HHHHHHHHHhCCCcCH-HHHHHHHhccCCCcHhhHHHHHHHHHHCCCeEEEecCCeEEEEEecCHHHHHHHH
Confidence 3456666665443322 33211000011156778999999999999997543 5566778999999877654
No 74
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=87.36 E-value=0.29 Score=34.87 Aligned_cols=45 Identities=22% Similarity=0.442 Sum_probs=34.6
Q ss_pred cCCcHHHHHHHhcccccCccceee---eeceeEEEecchhHHHHHhhc
Q psy5978 36 DVPNLQVIKTLQSLKSKGWVNEQF---AWRHYYWYITNDGIEKLRGVL 80 (159)
Q Consensus 36 ~vpNL~Vik~mqSLkSrGyVke~F---aWrh~Yw~LTneGI~yLR~yL 80 (159)
.++.=.|..+++.|..+|||...- .=|..++.||++|.+.+.+..
T Consensus 66 ~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~ 113 (149)
T 4hbl_A 66 DLSSNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTDNGQQQQEAVF 113 (149)
T ss_dssp TCCHHHHHHHHHHHHHHTSEEC---------CEEEECSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEeeCCCCCCcceeeeeECHHHHHHHHHHH
Confidence 478888999999999999998764 368889999999999987643
No 75
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=87.20 E-value=0.39 Score=34.69 Aligned_cols=45 Identities=24% Similarity=0.332 Sum_probs=38.5
Q ss_pred cCCcHHHHHHHhcccccCccceee---eeceeEEEecchhHHHHHhhc
Q psy5978 36 DVPNLQVIKTLQSLKSKGWVNEQF---AWRHYYWYITNDGIEKLRGVL 80 (159)
Q Consensus 36 ~vpNL~Vik~mqSLkSrGyVke~F---aWrh~Yw~LTneGI~yLR~yL 80 (159)
.|+.=.|..+++.|..+|||...- .-|-.+.+||++|.+.+.+..
T Consensus 71 ~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~~ 118 (162)
T 3k0l_A 71 FIKPQSANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKLNQCN 118 (162)
T ss_dssp TSCGGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCcCeEecCCCCcCCeeEeEECHhHHHHHHHHH
Confidence 477788999999999999999765 568899999999999887643
No 76
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=87.20 E-value=0.28 Score=34.79 Aligned_cols=44 Identities=14% Similarity=0.271 Sum_probs=37.2
Q ss_pred cCCcHHHHHHHhcccccCcccee---eeeceeEEEecchhHHHHHhh
Q psy5978 36 DVPNLQVIKTLQSLKSKGWVNEQ---FAWRHYYWYITNDGIEKLRGV 79 (159)
Q Consensus 36 ~vpNL~Vik~mqSLkSrGyVke~---FaWrh~Yw~LTneGI~yLR~y 79 (159)
.++.=.|..+++.|..+|||... -.=|-.+.+||++|.+.+.+.
T Consensus 64 ~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~LT~~G~~~~~~~ 110 (127)
T 2frh_A 64 NYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKIESL 110 (127)
T ss_dssp SSHHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHHH
Confidence 47788899999999999999873 336788899999999988764
No 77
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=87.01 E-value=0.4 Score=37.28 Aligned_cols=76 Identities=17% Similarity=0.267 Sum_probs=53.9
Q ss_pred cchhhHHHHHHHhhhc--ccEEEeeCCCCCCCCCcc-CCcHHHHHHHhcccccCcccee-eee-------ceeEEEecch
Q psy5978 3 MPKKNRYIIYEYLFKE--GVLVAKKDFHAPKHPELD-VPNLQVIKTLQSLKSKGWVNEQ-FAW-------RHYYWYITND 71 (159)
Q Consensus 3 ipk~~r~~IYe~LFke--GV~VakKD~~~~~Hpel~-vpNL~Vik~mqSLkSrGyVke~-FaW-------rh~Yw~LTne 71 (159)
+-..+|.+|+++|+.. +.+.+. +.. ..+. |.-=-|-..|+.|+..|+|++. +.| -+.||.||++
T Consensus 26 l~~~tR~~IL~~Ll~~p~~~~ta~-eL~----~~l~~lS~aTVyrhL~~L~eaGLV~~~~~~~~~~~rGrP~k~Y~LT~~ 100 (151)
T 3u1d_A 26 VLHETRLDVLHQILAQPDGVLSVE-ELL----YRNPDETEANLRYHVDELVDRGIVEKIPVPRAKSVDDPPTTFYAVTGE 100 (151)
T ss_dssp HCCHHHHHHHHHHHHSTTSCBCHH-HHH----HHCTTSCHHHHHHHHHHHHHTTSEEEEECCCCTTSSSCCCEEEEECHH
T ss_pred hcchHHHHHHHHHHcCCCCCCCHH-HHH----HhcCCCCHHHHHHHHHHHHHCCCeEEeecCcCcccCCCCceEEEECHH
Confidence 3456899999999864 322221 211 1223 5666789999999999999854 556 2569999999
Q ss_pred hHHHHHhhcCCC
Q psy5978 72 GIEKLRGVLNIP 83 (159)
Q Consensus 72 GI~yLR~yLhLP 83 (159)
|.+.|.+|=-|-
T Consensus 101 Gr~~l~~y~~la 112 (151)
T 3u1d_A 101 GIALLRAVSMYE 112 (151)
T ss_dssp HHHHHHHTTCST
T ss_pred HHHHHHHhHHHh
Confidence 999999865554
No 78
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=86.87 E-value=0.53 Score=33.87 Aligned_cols=48 Identities=17% Similarity=0.252 Sum_probs=38.1
Q ss_pred ccCCcHHHHHHHhcccccCccceeee-----eceeEEEecchhHHHHHhhcCC
Q psy5978 35 LDVPNLQVIKTLQSLKSKGWVNEQFA-----WRHYYWYITNDGIEKLRGVLNI 82 (159)
Q Consensus 35 l~vpNL~Vik~mqSLkSrGyVke~Fa-----Wrh~Yw~LTneGI~yLR~yLhL 82 (159)
.++..=.|..+++.|...|+|..... =+--||.||++|.++|.+.+..
T Consensus 38 ~~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~~~l~~~~~~ 90 (115)
T 4esb_A 38 TFVSEGSIYPLLLRMQKEKLIEGTLKASSLGPKRKYYHITDKGLEQLEEFKQS 90 (115)
T ss_dssp TTCCHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECHHHHHHHHHHHHH
T ss_pred CCCCcChHHHHHHHHHHCCCeEEEeeecCCCCCcEEEEECHHHHHHHHHHHHH
Confidence 34677789999999999999986531 1456889999999999987543
No 79
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=86.60 E-value=0.55 Score=34.37 Aligned_cols=68 Identities=19% Similarity=0.217 Sum_probs=49.4
Q ss_pred hhhHHHHHHHhhhcccEEEeeCCCCCCCCCc-cCCcHHHHHHHhcccccCccceeee---eceeEEEecchhHHHHHh
Q psy5978 5 KKNRYIIYEYLFKEGVLVAKKDFHAPKHPEL-DVPNLQVIKTLQSLKSKGWVNEQFA---WRHYYWYITNDGIEKLRG 78 (159)
Q Consensus 5 k~~r~~IYe~LFkeGV~VakKD~~~~~Hpel-~vpNL~Vik~mqSLkSrGyVke~Fa---Wrh~Yw~LTneGI~yLR~ 78 (159)
.+.+..|...|. +|-+-. .+.. ..+ .|..=.|...++.|...|+|...-. =|..||.||++|.+.+..
T Consensus 34 ~~w~l~IL~~L~-~g~~~~-~eLa----~~l~gis~~tls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~l~~~ 105 (131)
T 1yyv_A 34 SRWGVLILVALR-DGTHRF-SDLR----RXMGGVSEXMLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPLGEQVSDX 105 (131)
T ss_dssp SHHHHHHHHHGG-GCCEEH-HHHH----HHSTTCCHHHHHHHHHHHHHHTCEEEEEECSSSCEEEEEECHHHHHHHHH
T ss_pred CCcHHHHHHHHH-cCCCCH-HHHH----HHhccCCHHHHHHHHHHHHHCCcEEEEecCCCCCeEEEEECccHHHHHHH
Confidence 455667888887 554432 3321 134 3788889999999999999987655 488999999999886654
No 80
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=86.34 E-value=0.22 Score=35.30 Aligned_cols=44 Identities=18% Similarity=0.326 Sum_probs=30.5
Q ss_pred cCCcHHHHHHHhcccccCccceee---eeceeEEEecchhHHHHHhh
Q psy5978 36 DVPNLQVIKTLQSLKSKGWVNEQF---AWRHYYWYITNDGIEKLRGV 79 (159)
Q Consensus 36 ~vpNL~Vik~mqSLkSrGyVke~F---aWrh~Yw~LTneGI~yLR~y 79 (159)
.++.=.|..+++.|..+|||...- .=|..+.+||++|.+.+.+.
T Consensus 68 ~~~~~~vs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~ 114 (148)
T 3jw4_A 68 GRRGASITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGAALVEEF 114 (148)
T ss_dssp -----CHHHHHHHHHHTTSBCCC--------CCCCBCHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHHCCCEEeeCCCCCchhheeeECHHHHHHHHHH
Confidence 366667889999999999998664 46788999999999988764
No 81
>2e1n_A PEX, period extender; circadian clock, DNA binding protein, circadian clock protei; 1.80A {Synechococcus elongatus pcc 7942}
Probab=86.31 E-value=0.46 Score=35.68 Aligned_cols=47 Identities=6% Similarity=0.164 Sum_probs=38.3
Q ss_pred ccCCcHHHHHHHhcccccCccceeee------eceeEEEecchhHHHHHhhcC
Q psy5978 35 LDVPNLQVIKTLQSLKSKGWVNEQFA------WRHYYWYITNDGIEKLRGVLN 81 (159)
Q Consensus 35 l~vpNL~Vik~mqSLkSrGyVke~Fa------Wrh~Yw~LTneGI~yLR~yLh 81 (159)
+++..=.+..+|+.|...|||...-. =+.-||.||++|.++|.+++.
T Consensus 64 ~~is~gtLYp~L~rLe~~GlI~~~~~~~~~~g~~rk~Y~LT~~Gr~~l~~~~~ 116 (138)
T 2e1n_A 64 YRLSDTVLYTALKFLEDEQIISGYWKKVEGRGRPRRMYQLAQANDDRSRDLAQ 116 (138)
T ss_dssp EECCHHHHHHHHHHHHHTTSEEEEEECCTTCSSCEEEEEESCSCCHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHCCCEEEEeecccCCCCCcEEEEECHHHHHHHHHHHH
Confidence 45777788999999999999986531 246799999999999888764
No 82
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=86.30 E-value=0.38 Score=34.22 Aligned_cols=41 Identities=20% Similarity=0.165 Sum_probs=34.3
Q ss_pred ccCCcHHHHHHHhcccccCccceeeeeceeEEEecchhHHHHHh
Q psy5978 35 LDVPNLQVIKTLQSLKSKGWVNEQFAWRHYYWYITNDGIEKLRG 78 (159)
Q Consensus 35 l~vpNL~Vik~mqSLkSrGyVke~FaWrh~Yw~LTneGI~yLR~ 78 (159)
+.|+.=.|.++++.|..+|||... +..+++||++|.+.+.+
T Consensus 32 l~vs~~tvs~~l~~Le~~Glv~r~---~~~~~~LT~~g~~~~~~ 72 (142)
T 1on2_A 32 LAVHPSSVTKMVQKLDKDEYLIYE---KYRGLVLTSKGKKIGKR 72 (142)
T ss_dssp HTSCHHHHHHHHHHHHHTTSEEEE---TTTEEEECHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHCCCEEEe---eCceEEEchhHHHHHHH
Confidence 358888999999999999999765 34689999999877654
No 83
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=86.24 E-value=0.24 Score=34.88 Aligned_cols=44 Identities=11% Similarity=0.259 Sum_probs=30.6
Q ss_pred cCCcHHHHHHHhcccccCccceeee---eceeEEEecchhHHHHHhh
Q psy5978 36 DVPNLQVIKTLQSLKSKGWVNEQFA---WRHYYWYITNDGIEKLRGV 79 (159)
Q Consensus 36 ~vpNL~Vik~mqSLkSrGyVke~Fa---Wrh~Yw~LTneGI~yLR~y 79 (159)
.++.=.|..+++.|..+|||...-. -|..+.+||++|.+.+.+.
T Consensus 62 ~~~~~tvs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~ 108 (142)
T 3ech_A 62 CRDKALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIHLHA 108 (142)
T ss_dssp C---CHHHHHHHHHHHTTSEEC----------CCEECHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEeeccCCCCCCeeeeEECHHHHHHHHHH
Confidence 4777789999999999999987554 5889999999999988764
No 84
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=85.70 E-value=0.32 Score=34.19 Aligned_cols=45 Identities=20% Similarity=0.206 Sum_probs=34.3
Q ss_pred cCCcHHHHHHHhcccccCccceee---eeceeEEEecchhHHHHHhhc
Q psy5978 36 DVPNLQVIKTLQSLKSKGWVNEQF---AWRHYYWYITNDGIEKLRGVL 80 (159)
Q Consensus 36 ~vpNL~Vik~mqSLkSrGyVke~F---aWrh~Yw~LTneGI~yLR~yL 80 (159)
.++.=.|..+++.|..+|||...- .-|..++.||++|.+.+.+..
T Consensus 65 ~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~lT~~G~~~~~~~~ 112 (148)
T 3nrv_A 65 GLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVAS 112 (148)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEC---------CCBEECHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEEeecCCCCcceeEeEECHhHHHHHHHHH
Confidence 478888999999999999998653 366788999999999887643
No 85
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=85.64 E-value=0.32 Score=34.55 Aligned_cols=44 Identities=16% Similarity=0.141 Sum_probs=33.6
Q ss_pred cCCcHHHHHHHhcccccCccce-----eeeeceeEEEecchhHHHHHhh
Q psy5978 36 DVPNLQVIKTLQSLKSKGWVNE-----QFAWRHYYWYITNDGIEKLRGV 79 (159)
Q Consensus 36 ~vpNL~Vik~mqSLkSrGyVke-----~FaWrh~Yw~LTneGI~yLR~y 79 (159)
.+..=.|.++++.|..+|||.- .-.=|..|.+||++|.+.+.+.
T Consensus 62 ~~~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R~~~~~lT~~G~~~~~~~ 110 (151)
T 3kp7_A 62 GVNKAAVSRRVKKLLNAELVKLEKPDSNTDQRLKIIKLSNKGKKYIKER 110 (151)
T ss_dssp CSCSSHHHHHHHHHHHTTSEEC-----------CCBEECHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEEeeCCCCCCCCCeeEEEECHhHHHHHHHH
Confidence 4777889999999999999984 3557889999999999988754
No 86
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=85.49 E-value=0.72 Score=30.47 Aligned_cols=46 Identities=26% Similarity=0.408 Sum_probs=37.6
Q ss_pred ccCCcHHHHHHHhcccccCccceeee------eceeEEEecchhHHHHHhhc
Q psy5978 35 LDVPNLQVIKTLQSLKSKGWVNEQFA------WRHYYWYITNDGIEKLRGVL 80 (159)
Q Consensus 35 l~vpNL~Vik~mqSLkSrGyVke~Fa------Wrh~Yw~LTneGI~yLR~yL 80 (159)
+.|+.=.|..+++.|...|||...-. .+.++|.||++.++.+...+
T Consensus 46 l~is~~tv~~~l~~L~~~g~v~~~~~~~~~~gr~~~~~~l~~~~~~~~~~~~ 97 (109)
T 2d1h_A 46 FKLSKTTVENSLKKLIELGLVVRTKTEGKKIGRPKYYYSISSNILEKIRNDL 97 (109)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEEEC-------CCEEEEECTTHHHHHHHHH
T ss_pred HCcCHHHHHHHHHHHHHCCCeEeeccccCCCCCCCeeeecCHHHHHHHHHHH
Confidence 35888899999999999999988654 44678999998888877655
No 87
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=85.26 E-value=0.45 Score=33.60 Aligned_cols=40 Identities=23% Similarity=0.339 Sum_probs=33.3
Q ss_pred cCCcHHHHHHHhcccccCccceeeeeceeEEEecchhHHHHHhh
Q psy5978 36 DVPNLQVIKTLQSLKSKGWVNEQFAWRHYYWYITNDGIEKLRGV 79 (159)
Q Consensus 36 ~vpNL~Vik~mqSLkSrGyVke~FaWrh~Yw~LTneGI~yLR~y 79 (159)
.|+.=.|.++++.|..+|||...- ..|+||++|.+.+.+.
T Consensus 42 ~is~~tv~~~l~~Le~~Gli~r~~----~~~~Lt~~g~~~~~~~ 81 (139)
T 2x4h_A 42 KIAPSSVFEEVSHLEEKGLVKKKE----DGVWITNNGTRSINYL 81 (139)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEET----TEEEECHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHCCCEEecC----CeEEEChhHHHHHHHH
Confidence 488889999999999999997643 4688999999876544
No 88
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=85.17 E-value=0.58 Score=32.45 Aligned_cols=68 Identities=15% Similarity=0.139 Sum_probs=48.1
Q ss_pred chhhHHHHHHHhhhcccEEEeeCCCCCCCCCcc-CCcHHHHHHHhcccccCccceeee---eceeEEEecchhHHHHH
Q psy5978 4 PKKNRYIIYEYLFKEGVLVAKKDFHAPKHPELD-VPNLQVIKTLQSLKSKGWVNEQFA---WRHYYWYITNDGIEKLR 77 (159)
Q Consensus 4 pk~~r~~IYe~LFkeGV~VakKD~~~~~Hpel~-vpNL~Vik~mqSLkSrGyVke~Fa---Wrh~Yw~LTneGI~yLR 77 (159)
..+.+..|...|. +|-+-. .|.. ..+. |..=.|...++.|...|+|...-. =|..||.||++|.+.+.
T Consensus 23 ~~~~~~~IL~~L~-~~~~~~-~eL~----~~l~gis~~~ls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~l~~ 94 (107)
T 2fsw_A 23 AGKWTLLIIFQIN-RRIIRY-GELK----RAIPGISEKMLIDELKFLCGKGLIKKKQYPEVPPRVEYSLTPLGEKVLP 94 (107)
T ss_dssp TSSSHHHHHHHHT-TSCEEH-HHHH----HHSTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHTTHH
T ss_pred cCccHHHHHHHHH-hCCcCH-HHHH----HHcccCCHHHHHHHHHHHHHCCCEEEeecCCCCCeeEEEECccHHHHHH
Confidence 4455667888887 554332 3322 2344 788889999999999999987543 57799999999976443
No 89
>3ri2_A Transcriptional regulator, PADR-like family; PSI-biology, midwest center for structural genomics, MCSG, transcription regulator; 2.10A {Eggerthella lenta} PDB: 4ejo_A
Probab=84.73 E-value=0.76 Score=33.74 Aligned_cols=46 Identities=20% Similarity=0.391 Sum_probs=36.7
Q ss_pred ccCCcHHHHHHHhcccccCccceeee----eceeEEEecchhHHHHHhhc
Q psy5978 35 LDVPNLQVIKTLQSLKSKGWVNEQFA----WRHYYWYITNDGIEKLRGVL 80 (159)
Q Consensus 35 l~vpNL~Vik~mqSLkSrGyVke~Fa----Wrh~Yw~LTneGI~yLR~yL 80 (159)
+++..=.+.-+++.|...|||..... =+--||.||++|.++|.+.+
T Consensus 48 ~~is~gtlY~~L~rLe~~GlI~~~~~~~~~~~rk~Y~LT~~Gr~~l~~~~ 97 (123)
T 3ri2_A 48 IPIEANTLYPLMRRLESQGLLASEWDNGGSKPRKYYRTTDEGLRVLREVE 97 (123)
T ss_dssp CCCCHHHHHHHHHHHHHTTSEEEEEEECSSCEEEEEEECHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHCCCEEEEeccCCCCCceEEEECHHHHHHHHHHH
Confidence 35666788899999999999986521 23568999999999999865
No 90
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=84.17 E-value=0.88 Score=32.72 Aligned_cols=68 Identities=22% Similarity=0.312 Sum_probs=48.0
Q ss_pred hhhHHHHHHHhhhcccEEEeeCCCCCCCCCccCCcHHHHHHHhcccccCccceeeeeceeEEEecchhH-HHHHh
Q psy5978 5 KKNRYIIYEYLFKEGVLVAKKDFHAPKHPELDVPNLQVIKTLQSLKSKGWVNEQFAWRHYYWYITNDGI-EKLRG 78 (159)
Q Consensus 5 k~~r~~IYe~LFkeGV~VakKD~~~~~Hpel~vpNL~Vik~mqSLkSrGyVke~FaWrh~Yw~LTneGI-~yLR~ 78 (159)
...|..|...|.+...-+ .+. -..+.++.=.|-+.++.|...|+|...-.-++.||+||++++ ++++.
T Consensus 45 ~~~rl~IL~~L~~~~~s~--~el----a~~lgis~stvs~~L~~Le~~Glv~~~~~gr~~~y~l~~~~l~~~~~~ 113 (122)
T 1r1t_A 45 DPNRLRLLSLLARSELCV--GDL----AQAIGVSESAVSHQLRSLRNLRLVSYRKQGRHVYYQLQDHHIVALYQN 113 (122)
T ss_dssp CHHHHHHHHHHTTCCBCH--HHH----HHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCCH--HHH----HHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChHHHHHHHHH
Confidence 356778888876422211 111 112358888899999999999999877677889999999998 44443
No 91
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=84.15 E-value=0.15 Score=34.72 Aligned_cols=59 Identities=19% Similarity=0.235 Sum_probs=41.8
Q ss_pred chhhHHHHHHHhhhcccEEEeeCCCCCCCCCccCCcHHHHHHHhcccccCccceeeeeceeEEEecchhH
Q psy5978 4 PKKNRYIIYEYLFKEGVLVAKKDFHAPKHPELDVPNLQVIKTLQSLKSKGWVNEQFAWRHYYWYITNDGI 73 (159)
Q Consensus 4 pk~~r~~IYe~LFkeGV~VakKD~~~~~Hpel~vpNL~Vik~mqSLkSrGyVke~FaWrh~Yw~LTneGI 73 (159)
...+|..|.+.| +..+-+ .|. ...+.|+.=.|-+.++.|...|+|...- . ||.||++|.
T Consensus 29 ~~~~r~~Il~~L-~~~~~~--~eL----a~~l~is~~tv~~~L~~L~~~Glv~~~~--g--~y~l~~~g~ 87 (96)
T 1y0u_A 29 TNPVRRKILRML-DKGRSE--EEI----MQTLSLSKKQLDYHLKVLEAGFCIERVG--E--RWVVTDAGK 87 (96)
T ss_dssp SCHHHHHHHHHH-HTTCCH--HHH----HHHHTCCHHHHHHHHHHHHHTTSEEEET--T--EEEECTTTC
T ss_pred CCHHHHHHHHHH-cCCCCH--HHH----HHHHCcCHHHHHHHHHHHHHCCCEEEEC--C--EEEECCCch
Confidence 345678888888 433211 121 1123588888999999999999998765 3 889999984
No 92
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=84.15 E-value=0.5 Score=33.49 Aligned_cols=44 Identities=16% Similarity=0.219 Sum_probs=32.4
Q ss_pred cCCcHHHHHHHhcccccCccceee---eeceeEEEecchhHHHHHhh
Q psy5978 36 DVPNLQVIKTLQSLKSKGWVNEQF---AWRHYYWYITNDGIEKLRGV 79 (159)
Q Consensus 36 ~vpNL~Vik~mqSLkSrGyVke~F---aWrh~Yw~LTneGI~yLR~y 79 (159)
.++.=.|..+++.|..+|||...- .=|-.+.+||++|.+.+.+.
T Consensus 65 ~i~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~ 111 (150)
T 3fm5_A 65 GLDPSQIVGLVDELEERGLVVRTLDPSDRRNKLIAATEEGRRLRDDA 111 (150)
T ss_dssp TCCHHHHHHHHHHHHTTTSEEC-----------CEECHHHHHHHHHH
T ss_pred CCCHhHHHHHHHHHHHCCCEEeeCCccccchheeeECHHHHHHHHHH
Confidence 488889999999999999998644 35788899999999988764
No 93
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=83.95 E-value=0.65 Score=35.87 Aligned_cols=46 Identities=17% Similarity=0.249 Sum_probs=37.2
Q ss_pred cCCcHHHHHHHhcccccCccceeee---eceeEEEecchhHHHHHhhcC
Q psy5978 36 DVPNLQVIKTLQSLKSKGWVNEQFA---WRHYYWYITNDGIEKLRGVLN 81 (159)
Q Consensus 36 ~vpNL~Vik~mqSLkSrGyVke~Fa---Wrh~Yw~LTneGI~yLR~yLh 81 (159)
.|..=.|..+++.|..+|||...-. -|..|.+||++|.+.+.+...
T Consensus 73 ~i~~stvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~~~ 121 (207)
T 2fxa_A 73 VMHVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVFWSLLE 121 (207)
T ss_dssp TCCHHHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEEEecCCCCCceEEEEECHHHHHHHHHHHH
Confidence 4778889999999999999987654 788999999999999887653
No 94
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=83.19 E-value=0.13 Score=34.25 Aligned_cols=61 Identities=20% Similarity=0.255 Sum_probs=42.9
Q ss_pred HHHHHHHhhhcccEEEeeCCCCCCCCCccCCcHHHHHHHhcccccCccce--eeeeceeEEEecchhH
Q psy5978 8 RYIIYEYLFKEGVLVAKKDFHAPKHPELDVPNLQVIKTLQSLKSKGWVNE--QFAWRHYYWYITNDGI 73 (159)
Q Consensus 8 r~~IYe~LFkeGV~VakKD~~~~~Hpel~vpNL~Vik~mqSLkSrGyVke--~FaWrh~Yw~LTneGI 73 (159)
+..|.++|.++|-+-+ .|.. ..+.|+.-.|-+.++.|.+.|+|.. .-..+..||.|+++.+
T Consensus 2 r~~Il~~L~~~~~~s~-~eLa----~~lgvs~~tv~r~L~~L~~~GlI~~~~~~~gr~~~y~l~~~~~ 64 (81)
T 2htj_A 2 KNEILEFLNRHNGGKT-AEIA----EALAVTDYQARYYLLLLEKAGMVQRSPLRRGMATYWFLKGEKQ 64 (81)
T ss_dssp HHHHHHHHHHSCCCCH-HHHH----HHHTSCHHHHHHHHHHHHHHTSEEEECCSSSSSCEEEESSCSS
T ss_pred HHHHHHHHHHcCCCCH-HHHH----HHHCcCHHHHHHHHHHHHHCCCEEEeccCCCCcEEEEEChhhh
Confidence 5678888887653211 1110 1235888899999999999999984 3456788999988754
No 95
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=82.44 E-value=0.94 Score=34.00 Aligned_cols=45 Identities=13% Similarity=0.147 Sum_probs=37.8
Q ss_pred cCCcHHHHHHHhcccccCccceeee---eceeEEEecchhHHHHHhhc
Q psy5978 36 DVPNLQVIKTLQSLKSKGWVNEQFA---WRHYYWYITNDGIEKLRGVL 80 (159)
Q Consensus 36 ~vpNL~Vik~mqSLkSrGyVke~Fa---Wrh~Yw~LTneGI~yLR~yL 80 (159)
.++.=.|..+++.|..+|||...-+ -|..+.+||++|.+.+.+..
T Consensus 68 ~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~~ 115 (189)
T 3nqo_A 68 GTSKQNINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKKVMVTCS 115 (189)
T ss_dssp TSCHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHHHHH
Confidence 4788889999999999999987654 56799999999998877543
No 96
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=82.02 E-value=1.2 Score=32.55 Aligned_cols=44 Identities=18% Similarity=0.292 Sum_probs=37.9
Q ss_pred cCCcHHHHHHHhcccccCccceeee---eceeEEEecchhHHHHHhh
Q psy5978 36 DVPNLQVIKTLQSLKSKGWVNEQFA---WRHYYWYITNDGIEKLRGV 79 (159)
Q Consensus 36 ~vpNL~Vik~mqSLkSrGyVke~Fa---Wrh~Yw~LTneGI~yLR~y 79 (159)
.|..=.|..+++.|..+|||.-.-+ =|-.+.+||++|.+.+.+.
T Consensus 57 ~~~~~tvs~~v~~Le~~GlV~R~~~~~DrR~~~l~LT~~G~~~~~~~ 103 (151)
T 4aik_A 57 GIEQPSLVRTLDQLEEKGLITRHTSANDRRAKRIKLTEQSSPIIEQV 103 (151)
T ss_dssp TSCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECGGGHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCeEeecCCCCCcchhhhcCHHHHHHHHHH
Confidence 4888899999999999999986554 6889999999999887653
No 97
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=80.79 E-value=1.1 Score=36.46 Aligned_cols=66 Identities=17% Similarity=0.088 Sum_probs=48.0
Q ss_pred chhhHHHHHHHhhhcccEEEeeCCCCCCCCCccCCcHHHHHHHhcccccCccce-eeeec-----eeEEEecchhHHH
Q psy5978 4 PKKNRYIIYEYLFKEGVLVAKKDFHAPKHPELDVPNLQVIKTLQSLKSKGWVNE-QFAWR-----HYYWYITNDGIEK 75 (159)
Q Consensus 4 pk~~r~~IYe~LFkeGV~VakKD~~~~~Hpel~vpNL~Vik~mqSLkSrGyVke-~FaWr-----h~Yw~LTneGI~y 75 (159)
-..+|..|+..|.+ |-+.+ .+. -..+.++.=.|.+.++.|...|+|.. .-.-+ ..||.||++|+..
T Consensus 10 ~~~~R~~IL~~L~~-g~~s~-~EL----a~~lglS~stVs~hL~~Le~aGLV~~~~~~gr~~GRp~~~Y~Lt~~~~~~ 81 (232)
T 2qlz_A 10 GNKVRRDLLSHLTC-MECYF-SLL----SSKVSVSSTAVAKHLKIMEREGVLQSYEKEERFIGPTKKYYKISIAKSYV 81 (232)
T ss_dssp TSHHHHHHHHHHTT-TTTCS-SSS----CTTCCCCHHHHHHHHHHHHHTTSEEEEEECC-----CEEEEEECCCEEEE
T ss_pred CCHHHHHHHHHHHh-CCCCH-HHH----HHHHCcCHHHHHHHHHHHHHCCCEEEeeecCCCCCCccEEEEEccchhhH
Confidence 35689999999985 43221 121 22346888889999999999999998 44446 8899999999854
No 98
>3aaf_A Werner syndrome ATP-dependent helicase; helix-turn-helix, winged-helix, protein-DNA complex, DNA-BIN helicase; HET: DNA; 1.90A {Homo sapiens} PDB: 2axl_A
Probab=80.74 E-value=1.3 Score=32.95 Aligned_cols=50 Identities=12% Similarity=0.069 Sum_probs=39.9
Q ss_pred CCcHHHHHHHhcccccCccceeeeece--eEEEecchhHHHHHhhcCCCCCC
Q psy5978 37 VPNLQVIKTLQSLKSKGWVNEQFAWRH--YYWYITNDGIEKLRGVLNIPDEI 86 (159)
Q Consensus 37 vpNL~Vik~mqSLkSrGyVke~FaWrh--~Yw~LTneGI~yLR~yLhLP~ei 86 (159)
.+.=++..+++.|...||+.+...-.. -+..||++|-++|+.....|+++
T Consensus 65 ~s~~~w~~lirqLi~~G~L~~~~~~~~~~~~L~Lt~~g~~vL~~~~~~~~~l 116 (134)
T 3aaf_A 65 QTESWWKAFSRQLITEGFLVEVSRYNKFMKICALTKKGRNWLHKANTESQSL 116 (134)
T ss_dssp SCHHHHHHHHHHHHHTTSEEEEECSSTTCEEEEECHHHHHHHHHHTTSCCCC
T ss_pred CCHHHHHHHHHHHHHcCCceeecCcCccCceEEECHHHHHHHhCCccCCCce
Confidence 777789999999999999999873210 25899999999999987755444
No 99
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=80.41 E-value=1.3 Score=32.03 Aligned_cols=44 Identities=25% Similarity=0.197 Sum_probs=36.9
Q ss_pred cCCcHHHHHHHhcccccCccceeee---eceeEEEecchhHHHHHhh
Q psy5978 36 DVPNLQVIKTLQSLKSKGWVNEQFA---WRHYYWYITNDGIEKLRGV 79 (159)
Q Consensus 36 ~vpNL~Vik~mqSLkSrGyVke~Fa---Wrh~Yw~LTneGI~yLR~y 79 (159)
.|..=.|..++..|..+|||...-+ =|-.+.+||++|.+.+.+.
T Consensus 62 ~~~~~tvs~~v~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~ 108 (147)
T 4b8x_A 62 MVHPTSVTNTVDRLVRSGLVAKRPNPNDGRGTLATITDKGREVVEAA 108 (147)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEECC----CEEEEECHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCCEEEeecCCcCceeEEEECHHHHHHHHHH
Confidence 4888889999999999999997766 4789999999999988753
No 100
>2zfw_A PEX; five alpha-helices + one beta-sheet, circadian clock protein; 2.90A {Synechococcus SP}
Probab=79.31 E-value=0.56 Score=35.78 Aligned_cols=47 Identities=6% Similarity=0.171 Sum_probs=37.8
Q ss_pred ccCCcHHHHHHHhcccccCccceee------eeceeEEEecchhHHHHHhhcC
Q psy5978 35 LDVPNLQVIKTLQSLKSKGWVNEQF------AWRHYYWYITNDGIEKLRGVLN 81 (159)
Q Consensus 35 l~vpNL~Vik~mqSLkSrGyVke~F------aWrh~Yw~LTneGI~yLR~yLh 81 (159)
+++..=.+..+|+.|...|||.... .=+--||.||++|.+.|.+++.
T Consensus 74 ~~is~gtLYp~L~rLE~~GlI~~~~~~~~~~g~~rk~Y~LT~~Gr~~l~~~~~ 126 (148)
T 2zfw_A 74 YRLSDTVLYTALKFLEDEQIISGYWKKVEGRGRPRRMYQLAQANDDRSRDLAQ 126 (148)
T ss_dssp EECCSHHHHHHHHHHHHTSSEEEECCCCTTSSCCCCEEEESSSSCSTTHHHHH
T ss_pred CCCChhHHHHHHHHHHHCCCEEEEeeccCCCCCCcEEEEECHHHHHHHHHHHH
Confidence 4577778999999999999998653 1346799999999988877654
No 101
>3l9f_A Putative uncharacterized protein SMU.1604C; PADR, transcription regulator; 1.80A {Streptococcus mutans}
Probab=79.03 E-value=1.4 Score=35.10 Aligned_cols=50 Identities=20% Similarity=0.248 Sum_probs=40.4
Q ss_pred cCCcHHHHHHHhcccccCccceeee----e-ceeEEEecchhHHHHHhhcCCCCC
Q psy5978 36 DVPNLQVIKTLQSLKSKGWVNEQFA----W-RHYYWYITNDGIEKLRGVLNIPDE 85 (159)
Q Consensus 36 ~vpNL~Vik~mqSLkSrGyVke~Fa----W-rh~Yw~LTneGI~yLR~yLhLP~e 85 (159)
++..=+|..+++.|...|+|...-. - .--||.||++|.+.|.++|.=|.+
T Consensus 68 ~~s~g~lY~~L~rLe~~GlI~~~~~~~~~~p~rk~Y~iT~~Gr~~l~~~l~~~~~ 122 (204)
T 3l9f_A 68 DGTYGMIYPTLRKLEKDGKITKEVVIQDGRPNKNIYAITESGKKELASYLQSDVN 122 (204)
T ss_dssp ECCTTCHHHHHHHHHHTTSEEEEEECCTTSCCEEEEEECHHHHHHHHHHHHSCCC
T ss_pred CCCcchHHHHHHHHHHCCCeEEEeeccCCCCCceEEEEChHHHHHHHHHHhcccC
Confidence 4666678999999999999986531 1 246899999999999999987754
No 102
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=77.63 E-value=0.98 Score=35.47 Aligned_cols=48 Identities=17% Similarity=0.207 Sum_probs=37.9
Q ss_pred ccCCcHHHHHHHhcccccCccceeeeeceeEEEecchhHHH--------------HHhhcCCCCC
Q psy5978 35 LDVPNLQVIKTLQSLKSKGWVNEQFAWRHYYWYITNDGIEK--------------LRGVLNIPDE 85 (159)
Q Consensus 35 l~vpNL~Vik~mqSLkSrGyVke~FaWrh~Yw~LTneGI~y--------------LR~yLhLP~e 85 (159)
+.|..=.|..+++.|..+|||.-. ++.+++||++|.+. |.+.|+++++
T Consensus 34 l~vs~~tvs~~l~~Le~~GlV~r~---~~~~v~LT~~G~~~~~~~~~~~~~~e~~l~~~lgl~~e 95 (226)
T 2qq9_A 34 LEQSGPTVSQTVARMERDGLVVVA---SDRSLQMTPTGRTLATAVMRKHRLAERLLTDIIGLDIN 95 (226)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEC---TTSBEEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred HCCCHHHHHHHHHHHHHCCCEEEe---CCCCeEECHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 358888899999999999999875 34679999999763 4445688865
No 103
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=77.43 E-value=0.45 Score=35.19 Aligned_cols=44 Identities=14% Similarity=0.145 Sum_probs=33.9
Q ss_pred cCCcHHHHHHHhcccccCccceee---eeceeEEEecchhHHHHHhh
Q psy5978 36 DVPNLQVIKTLQSLKSKGWVNEQF---AWRHYYWYITNDGIEKLRGV 79 (159)
Q Consensus 36 ~vpNL~Vik~mqSLkSrGyVke~F---aWrh~Yw~LTneGI~yLR~y 79 (159)
.|+.=.|.++++.|..+|||...- .-|..+.+||++|.+++.+.
T Consensus 97 ~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~~~ 143 (181)
T 2fbk_A 97 AISGPSTSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRALVTHL 143 (181)
T ss_dssp SCCSGGGSSHHHHHHHHTSEECCC-------CCBEECHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCcCEEecCCCCCCCeeEEEECHHHHHHHHHH
Confidence 467777888999999999998753 46778999999999988754
No 104
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=76.65 E-value=1.3 Score=34.69 Aligned_cols=50 Identities=16% Similarity=0.189 Sum_probs=39.5
Q ss_pred ccCCcHHHHHHHhcccccCccceeeeeceeEEEecchhHH--------------HHHhhcCCCCCCC
Q psy5978 35 LDVPNLQVIKTLQSLKSKGWVNEQFAWRHYYWYITNDGIE--------------KLRGVLNIPDEIV 87 (159)
Q Consensus 35 l~vpNL~Vik~mqSLkSrGyVke~FaWrh~Yw~LTneGI~--------------yLR~yLhLP~eiV 87 (159)
+.|..=.|.++++.|..+|||.-.= +.+++||++|.+ ||.+.|+++.+.+
T Consensus 30 l~vs~~tvs~~l~~Le~~GlV~r~~---~~~i~LT~~G~~~~~~~~~~h~~~e~~l~~~lg~~~~e~ 93 (214)
T 3hrs_A 30 MQVSPPAVTEMMKKLLAEELLIKDK---KAGYLLTDLGLKLVSDLYRKHRLIEVFLVHHLGYTTEEI 93 (214)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEET---TTEEEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHH
T ss_pred HCCChhHHHHHHHHHHHCCCEEEec---CCCeEECHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 3588899999999999999997653 357899999976 3445678886643
No 105
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=74.86 E-value=2.5 Score=29.21 Aligned_cols=70 Identities=19% Similarity=0.237 Sum_probs=48.5
Q ss_pred hhhHHHHHHHhhhcccEEEeeCCCCCCCCCccCCcHHHHHHHhcccccCccceeeeeceeEEEecchhH-HHHHhhc
Q psy5978 5 KKNRYIIYEYLFKEGVLVAKKDFHAPKHPELDVPNLQVIKTLQSLKSKGWVNEQFAWRHYYWYITNDGI-EKLRGVL 80 (159)
Q Consensus 5 k~~r~~IYe~LFkeGV~VakKD~~~~~Hpel~vpNL~Vik~mqSLkSrGyVke~FaWrh~Yw~LTneGI-~yLR~yL 80 (159)
...+..|+..|.++..-+ .+. -..+.++.=.|-+.++.|...|+|...-.-|..||+||.+.+ +.++..+
T Consensus 31 ~~~~~~il~~L~~~~~s~--~el----a~~l~is~stvsr~l~~Le~~Glv~~~~~~r~~~~~~~~~~~~~~~~~~~ 101 (119)
T 2lkp_A 31 TPSRLMILTQLRNGPLPV--TDL----AEAIGMEQSAVSHQLRVLRNLGLVVGDRAGRSIVYSLYDTHVAQLLDEAI 101 (119)
T ss_dssp CHHHHHHHHHHHHCCCCH--HHH----HHHHSSCHHHHHHHHHHHHHHCSEEEEEETTEEEEEESCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCH--HHH----HHHHCcCHHHHHHHHHHHHHCCCEEEEecCCEEEEEEchHHHHHHHHHHH
Confidence 356677888877522111 111 112358888999999999999999877788999999996654 5655443
No 106
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=74.21 E-value=1.5 Score=32.37 Aligned_cols=66 Identities=20% Similarity=0.209 Sum_probs=44.8
Q ss_pred chhhHHHHHHHhhhcccEEEeeCCCCCCCCCccCCcHHHHHHHhcccccCccceeee--eceeEEEecchhHHH
Q psy5978 4 PKKNRYIIYEYLFKEGVLVAKKDFHAPKHPELDVPNLQVIKTLQSLKSKGWVNEQFA--WRHYYWYITNDGIEK 75 (159)
Q Consensus 4 pk~~r~~IYe~LFkeGV~VakKD~~~~~Hpel~vpNL~Vik~mqSLkSrGyVke~Fa--Wrh~Yw~LTneGI~y 75 (159)
..+.+..|...|+ +|.+-. .|+ ...+.|+.=.|...++.|...|+|...-. =+..+|.||++|.+.
T Consensus 22 ~~~w~l~IL~~L~-~g~~~~-~eL----a~~lgis~~tls~~L~~Le~~GlI~r~~~~~d~~~~y~LT~~G~~l 89 (146)
T 2f2e_A 22 GDGWSMLIVRDAF-EGLTRF-GEF----QKSLGLAKNILAARLRNLVEHGVMVAVPAESGSHQEYRLTDKGRAL 89 (146)
T ss_dssp CSSSHHHHHHHHH-TTCCSH-HHH----HHHHCCCHHHHHHHHHHHHHTTSEEEEECSSSSCEEEEECHHHHTT
T ss_pred CCchHHHHHHHHH-hCCCCH-HHH----HHHhCCCHHHHHHHHHHHHHCCCEEEEecCCCCeEEEEECchHHHH
Confidence 4455667888887 453321 221 11235888999999999999999986542 115788999999643
No 107
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=72.07 E-value=1.8 Score=35.06 Aligned_cols=70 Identities=11% Similarity=0.146 Sum_probs=45.7
Q ss_pred hHHHHHHHhhhcccEEEeeCCCCCCCCCccCCcHHHHHHHhcccccCccceeeeeceeEEEecchhHHHHHhhcCCC
Q psy5978 7 NRYIIYEYLFKEGVLVAKKDFHAPKHPELDVPNLQVIKTLQSLKSKGWVNEQFAWRHYYWYITNDGIEKLRGVLNIP 83 (159)
Q Consensus 7 ~r~~IYe~LFkeGV~VakKD~~~~~Hpel~vpNL~Vik~mqSLkSrGyVke~FaWrh~Yw~LTneGI~yLR~yLhLP 83 (159)
....|.+.|.++|-+-. +|. -..+.++.=.|.+.++.|...|||... =|...|.||++|.+.+..+..+|
T Consensus 153 ~~~~IL~~L~~~~~~s~-~eL----A~~lglsksTv~r~L~~Le~~GlV~r~--~r~~~~~LT~~G~~l~~~~~~~~ 222 (244)
T 2wte_A 153 EEMKLLNVLYETKGTGI-TEL----AKMLDKSEKTLINKIAELKKFGILTQK--GKDRKVELNELGLNVIKLNKSVI 222 (244)
T ss_dssp HHHHHHHHHHHHTCBCH-HHH----HHHHTCCHHHHHHHHHHHHHTTSEEEE--TTTTEEEECHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHcCCCCH-HHH----HHHHCcCHHHHHHHHHHHHHCCCEEEe--CCccEEEECHHHHHHHHHHhccc
Confidence 34566666654442211 111 112358888899999999999999875 24557889999999888765554
No 108
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=69.44 E-value=3.5 Score=30.58 Aligned_cols=68 Identities=15% Similarity=0.144 Sum_probs=45.4
Q ss_pred chhhHHHHHHHhhhcccEEEeeCCCCCCCCCc-cCCcHHHHHHHhcccccCccceeee---eceeEEEecchhHHHHH
Q psy5978 4 PKKNRYIIYEYLFKEGVLVAKKDFHAPKHPEL-DVPNLQVIKTLQSLKSKGWVNEQFA---WRHYYWYITNDGIEKLR 77 (159)
Q Consensus 4 pk~~r~~IYe~LFkeGV~VakKD~~~~~Hpel-~vpNL~Vik~mqSLkSrGyVke~Fa---Wrh~Yw~LTneGI~yLR 77 (159)
-.+-+..|...|+ +|.+=. .|. ...+ .|..=.+...++.|...|+|...-. =+..+|.||++|.+.+.
T Consensus 24 g~kW~l~IL~~L~-~g~~rf-~eL----~~~l~gIs~~~Ls~~L~~Le~~GLV~R~~~~~d~r~v~y~LT~~G~~l~~ 95 (131)
T 4a5n_A 24 GGKWKGILFYHMI-DGKKRF-NEF----RRICPSITQRMLTLQLRELEADGIVHREVYHQVPPKVEYSLTEFGRTLEP 95 (131)
T ss_dssp CSSSHHHHHHHHT-TSCBCH-HHH----HHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGHH
T ss_pred cCcCHHHHHHHHh-cCCcCH-HHH----HHHhcccCHHHHHHHHHHHHHCCCEEEEecCCCCCeEEEEECHhHHHHHH
Confidence 3445566777776 453211 111 1134 4777789999999999999987642 25789999999976543
No 109
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=68.26 E-value=2 Score=33.58 Aligned_cols=39 Identities=15% Similarity=0.101 Sum_probs=33.1
Q ss_pred cCCcHHHHHHHhcccccCccceeeeeceeEEEecchhHHHHH
Q psy5978 36 DVPNLQVIKTLQSLKSKGWVNEQFAWRHYYWYITNDGIEKLR 77 (159)
Q Consensus 36 ~vpNL~Vik~mqSLkSrGyVke~FaWrh~Yw~LTneGI~yLR 77 (159)
.|..=.|..+++.|..+|||.-.-. -+++||++|.+.+.
T Consensus 35 ~vs~~tvs~~l~~Le~~GlV~r~~~---~~v~LT~~G~~~~~ 73 (230)
T 1fx7_A 35 DQSGPTVSQTVSRMERDGLLRVAGD---RHLELTEKGRALAI 73 (230)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEECTT---SCEEECHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHCCCEEEeCC---ccEEECHHHHHHHH
Confidence 4888889999999999999987654 37899999987654
No 110
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=66.61 E-value=3.2 Score=29.80 Aligned_cols=41 Identities=20% Similarity=0.173 Sum_probs=33.5
Q ss_pred cCCcHHHHHHHhcccccCccceeeeeceeEEEecchhHHHHHhh
Q psy5978 36 DVPNLQVIKTLQSLKSKGWVNEQFAWRHYYWYITNDGIEKLRGV 79 (159)
Q Consensus 36 ~vpNL~Vik~mqSLkSrGyVke~FaWrh~Yw~LTneGI~yLR~y 79 (159)
.|..-.|-++++.|..+|||...-. ..++||++|.+.+.+.
T Consensus 65 ~vs~~tvs~~l~~Le~~Glv~r~~~---~~~~lT~~g~~~~~~~ 105 (155)
T 2h09_A 65 GVSQPTVAKMLKRLATMGLIEMIPW---RGVFLTAEGEKLAQES 105 (155)
T ss_dssp TSCHHHHHHHHHHHHHTTCEEEETT---TEEEECHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHCCCEEEecC---CceEEChhHHHHHHHH
Confidence 4888889999999999999976533 4678999999876653
No 111
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=63.21 E-value=5.8 Score=30.74 Aligned_cols=74 Identities=14% Similarity=0.203 Sum_probs=50.9
Q ss_pred hhHHHHHHHhhhcccEEEeeCCCCCC-CCCccCCcHHHHHHHhcccccCccceeeeeceeEEEecchhHHHHHhh
Q psy5978 6 KNRYIIYEYLFKEGVLVAKKDFHAPK-HPELDVPNLQVIKTLQSLKSKGWVNEQFAWRHYYWYITNDGIEKLRGV 79 (159)
Q Consensus 6 ~~r~~IYe~LFkeGV~VakKD~~~~~-Hpel~vpNL~Vik~mqSLkSrGyVke~FaWrh~Yw~LTneGI~yLR~y 79 (159)
.+...|+..|-+.|-+......+... -..+.+..=.|-+.++.|...|++.-.-.-|.....||++|.+++...
T Consensus 7 ~~~l~~l~~l~~~~~l~~~~~~s~s~aA~~L~isq~avSr~I~~LE~~~L~~R~~~~R~~~v~LT~~G~~l~~~~ 81 (230)
T 3cta_A 7 DQYYRAIKKIKEAAEASNRAYLTSSKLADMLGISQQSASRIIIDLEKNGYITRTVTKRGQILNITEKGLDVLYTE 81 (230)
T ss_dssp CHHHHHHHHHHHHTTTSSEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEcCCeEEEEECHHHHHHHHHH
Confidence 34556777776666554322222110 012347888899999999999999876556889999999999887653
No 112
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=61.25 E-value=3.2 Score=30.08 Aligned_cols=43 Identities=19% Similarity=0.210 Sum_probs=30.4
Q ss_pred CCcHHHHHHHhcccccCccceeee--eceeEEEecchhHHHHHhh
Q psy5978 37 VPNLQVIKTLQSLKSKGWVNEQFA--WRHYYWYITNDGIEKLRGV 79 (159)
Q Consensus 37 vpNL~Vik~mqSLkSrGyVke~Fa--Wrh~Yw~LTneGI~yLR~y 79 (159)
|..=.|..+++.|..+|||...-. =|-.+-+||++|.+.+.+-
T Consensus 64 ~~~~tvsr~v~~Le~~glVr~~~~~DrR~~~v~LT~~G~~~~~~~ 108 (148)
T 4fx0_A 64 VERTTLTRNLEVMRRDGLVRVMAGADARCKRIELTAKGRAALQKA 108 (148)
T ss_dssp CCHHHHHHHHHHHHHTTSBC-----------CCBCHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHHCCCEEeeCCCCCCeeEEEECHHHHHHHHHH
Confidence 777889999999999999965432 3667889999999988763
No 113
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=60.01 E-value=5 Score=28.72 Aligned_cols=66 Identities=17% Similarity=0.147 Sum_probs=39.9
Q ss_pred hHHHHHHHhhh-cccEEEeeCCCCCCCCCccCCcHHHHHHHhcccccCccceeeeeceeEE--EecchhH
Q psy5978 7 NRYIIYEYLFK-EGVLVAKKDFHAPKHPELDVPNLQVIKTLQSLKSKGWVNEQFAWRHYYW--YITNDGI 73 (159)
Q Consensus 7 ~r~~IYe~LFk-eGV~VakKD~~~~~Hpel~vpNL~Vik~mqSLkSrGyVke~FaWrh~Yw--~LTneGI 73 (159)
....|...|.+ +|-+-+ +|..--...+-++..=.|..+++.|..+|||...-.-|-+.| +||.+|.
T Consensus 10 ~e~~vL~~L~~~~~~~t~-~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~r~~~~r~~~~~~~lt~~~~ 78 (138)
T 2g9w_A 10 LERAVMDHLWSRTEPQTV-RQVHEALSARRDLAYTTVMAVLQRLAKKNLVLQIRDDRAHRYAPVHGRDEL 78 (138)
T ss_dssp HHHHHHHHHHTCSSCEEH-HHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEEC---CCEEEESSCHHHH
T ss_pred HHHHHHHHHHhcCCCCCH-HHHHHHHhccCCCCHHHHHHHHHHHHHCCCEEEEecCCeEEEEeCCCHHHH
Confidence 34578888886 343332 443211111112567789999999999999987655554444 4788875
No 114
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=59.68 E-value=3.5 Score=32.89 Aligned_cols=60 Identities=13% Similarity=0.025 Sum_probs=47.0
Q ss_pred hhHHHHHHHhhhcccEEEeeCCCCCCCCCccCCcHHHHHHHhcccccCccceeeeeceeEEEecch
Q psy5978 6 KNRYIIYEYLFKEGVLVAKKDFHAPKHPELDVPNLQVIKTLQSLKSKGWVNEQFAWRHYYWYITND 71 (159)
Q Consensus 6 ~~r~~IYe~LFkeGV~VakKD~~~~~Hpel~vpNL~Vik~mqSLkSrGyVke~FaWrh~Yw~LTne 71 (159)
.-+++|+|+|- +|++-.-+=.+ .|.++-=++-=++..|.--|.|+|.=-=+--||+|.+.
T Consensus 11 erk~~ILE~Lk-~G~~~t~~Iak-----~LGlShg~aq~~Ly~LeREG~V~~Vk~GK~ayw~L~~s 70 (165)
T 2vxz_A 11 VRLRDILALLA-DGCKTTSLIQQ-----RLGLSHGRAKALIYVLEKEGRVTRVAFGNVALVCLSMD 70 (165)
T ss_dssp HHHHHHHHHHT-TCCEEHHHHHH-----HHTCCHHHHHHHHHHHHHTTSCEEEEETTEEEEESCHH
T ss_pred HHHHHHHHHHH-hCCccHHHHHH-----HhCCcHHHHHHHHHHHHhcCceEEEEEccEEEEEecHH
Confidence 34789999998 99876422111 34577778888999999999999999999999999654
No 115
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=58.88 E-value=1.7 Score=29.46 Aligned_cols=44 Identities=25% Similarity=0.480 Sum_probs=32.2
Q ss_pred HHHHHHhhhcccEEEeeCCCCCCCCCccCCcHHHHHHHhcccccCccc
Q psy5978 9 YIIYEYLFKEGVLVAKKDFHAPKHPELDVPNLQVIKTLQSLKSKGWVN 56 (159)
Q Consensus 9 ~~IYe~LFkeGV~VakKD~~~~~Hpel~vpNL~Vik~mqSLkSrGyVk 56 (159)
..||+++-..|=++--.+|.. ...|+.=.|++++++|.++|+++
T Consensus 13 ~~lL~yIr~sGGildI~~~a~----kygV~kdeV~~~LrrLe~KGLI~ 56 (59)
T 2xvc_A 13 RELLDYIVNNGGFLDIEHFSK----VYGVEKQEVVKLLEALKNKGLIA 56 (59)
T ss_dssp HHHHHHHHHTTSEEEHHHHHH----HHCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHcCCEEeHHHHHH----HhCCCHHHHHHHHHHHHHCCCee
Confidence 478899886654443344321 34599999999999999999986
No 116
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=56.79 E-value=4.5 Score=31.74 Aligned_cols=68 Identities=18% Similarity=0.227 Sum_probs=50.1
Q ss_pred chhhHHHHHHHhhhcccEEEeeCCCCCCCCCccCCcHHHHHHHhcccccCccceeee-----eceeEEEecchhHHHHH
Q psy5978 4 PKKNRYIIYEYLFKEGVLVAKKDFHAPKHPELDVPNLQVIKTLQSLKSKGWVNEQFA-----WRHYYWYITNDGIEKLR 77 (159)
Q Consensus 4 pk~~r~~IYe~LFkeGV~VakKD~~~~~Hpel~vpNL~Vik~mqSLkSrGyVke~Fa-----Wrh~Yw~LTneGI~yLR 77 (159)
...+|..|...|- +|-+-+ .|.. ..+.++.=.|...++.|...|+|...-. -+..||.||++|+.-+.
T Consensus 13 ~~~~rl~IL~~L~-~~~~s~-~eLa----~~l~is~stvs~hLk~Le~~GLV~~~~~~~~~g~~~~~Y~Lt~~~~~~l~ 85 (202)
T 2p4w_A 13 GNETRRRILFLLT-KRPYFV-SELS----RELGVGQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKKGLRLEIL 85 (202)
T ss_dssp HSHHHHHHHHHHH-HSCEEH-HHHH----HHHTCCHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECTTEEEEEE
T ss_pred CCHHHHHHHHHHH-hCCCCH-HHHH----HHHCcCHHHHHHHHHHHHHCCceEEEeeccCCCCceEEEEEChHHHHHHH
Confidence 3567889999885 443322 2221 1235888899999999999999998665 78899999999985543
No 117
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=56.32 E-value=5.4 Score=32.15 Aligned_cols=43 Identities=19% Similarity=0.172 Sum_probs=34.1
Q ss_pred ccCCcHHHHHHHhcccccCccceeeeeceeEEEecchhHHHHHhhcC
Q psy5978 35 LDVPNLQVIKTLQSLKSKGWVNEQFAWRHYYWYITNDGIEKLRGVLN 81 (159)
Q Consensus 35 l~vpNL~Vik~mqSLkSrGyVke~FaWrh~Yw~LTneGI~yLR~yLh 81 (159)
|+|..=.|-.+|+-|+++|||.-.= -+-+||++|.+++.+-..
T Consensus 40 LgvS~~SV~~~lkkL~e~GLV~~~~----~Gv~LTe~G~~~A~~i~~ 82 (200)
T 2p8t_A 40 LELGEGSVRTLLRKLSHLDIIRSKQ----RGHFLTLKGKEIRDKLLS 82 (200)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEC------CEEECHHHHHHHHHHHT
T ss_pred hCCCHHHHHHHHHHHHHCCCEEEeC----CCeEECHHHHHHHHHHHH
Confidence 4588899999999999999996543 478999999987765443
No 118
>1bm9_A RTP, TER, replication terminator protein; DNA-binding protein, contrahelicase; 2.00A {Bacillus subtilis} SCOP: a.4.5.7 PDB: 1f4k_A 1j0r_A 2dpd_A 2dpu_A 2efw_A* 2dqr_A
Probab=55.47 E-value=15 Score=27.51 Aligned_cols=45 Identities=9% Similarity=0.125 Sum_probs=37.6
Q ss_pred CccCCcHHHHHHHhcccccCccceeeeece---------eEEEecchhHH--HHHhhc
Q psy5978 34 ELDVPNLQVIKTLQSLKSKGWVNEQFAWRH---------YYWYITNDGIE--KLRGVL 80 (159)
Q Consensus 34 el~vpNL~Vik~mqSLkSrGyVke~FaWrh---------~Yw~LTneGI~--yLR~yL 80 (159)
.++++.=.|..+|..|...|||+. -|+- -||.||++|-+ |+.++.
T Consensus 49 ~~~is~gtlYp~L~rLe~~Gll~~--~~~~~~g~~r~~rkyY~lT~~G~~~~~~~~~~ 104 (122)
T 1bm9_A 49 GFKPNHTEVYRSLHELLDDGILKQ--IKVKKEGAKLQEVVLYQFKDYEAAKLYKKQLK 104 (122)
T ss_dssp TCCCCHHHHHHHHHHHHHTTSEEE--EEEECTTSTTCEEEEEEESCHHHHHHHHHHHH
T ss_pred cccCCcccHHHHHHHHHHCCCeEE--EEeecCCCCCCceeEEEEChhhhhHHHHHHHH
Confidence 346788899999999999999976 4563 89999999999 988753
No 119
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=53.99 E-value=3 Score=27.09 Aligned_cols=56 Identities=25% Similarity=0.288 Sum_probs=37.4
Q ss_pred hHHHHHHHhhhcccEEEeeCCCCCCCCCccCCcHHHHHHHhcccccCccceeeeeceeEEEec
Q psy5978 7 NRYIIYEYLFKEGVLVAKKDFHAPKHPELDVPNLQVIKTLQSLKSKGWVNEQFAWRHYYWYIT 69 (159)
Q Consensus 7 ~r~~IYe~LFkeGV~VakKD~~~~~Hpel~vpNL~Vik~mqSLkSrGyVke~FaWrh~Yw~LT 69 (159)
.+..|.+.|-+++--+.-.|.. ..+.|+-=.|-++++.|+..|||... +--||.|+
T Consensus 11 ~~~~IL~~L~~~~~~~s~~eLA----~~lglsr~tv~~~l~~L~~~G~I~~~---~~G~y~lg 66 (67)
T 2heo_A 11 LEQKILQVLSDDGGPVAIFQLV----KKCQVPKKTLNQVLYRLKKEDRVSSP---SPKYWSIG 66 (67)
T ss_dssp HHHHHHHHHHHHCSCEEHHHHH----HHHCSCHHHHHHHHHHHHHTTSEEEE---ETTEEEEC
T ss_pred HHHHHHHHHHHcCCCcCHHHHH----HHHCcCHHHHHHHHHHHHHCCcEecC---CCceEeeC
Confidence 4668999887654322223321 13469999999999999999998542 22467765
No 120
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=38.64 E-value=11 Score=26.15 Aligned_cols=47 Identities=19% Similarity=0.368 Sum_probs=34.4
Q ss_pred hHHHHHHHhhh---cccEEEeeCCCCCCCCCccCCcHHHHHHHhcccccCccceee
Q psy5978 7 NRYIIYEYLFK---EGVLVAKKDFHAPKHPELDVPNLQVIKTLQSLKSKGWVNEQF 59 (159)
Q Consensus 7 ~r~~IYe~LFk---eGV~VakKD~~~~~Hpel~vpNL~Vik~mqSLkSrGyVke~F 59 (159)
....||..|.. +|+ ..+|... .+++++=.|.+++++|.++|||+.+=
T Consensus 21 ~q~~Vl~~I~~~g~~gi--~qkeLa~----~~~l~~~tvt~iLk~LE~kglIkr~~ 70 (91)
T 2dk5_A 21 QEKLVYQIIEDAGNKGI--WSRDVRY----KSNLPLTEINKILKNLESKKLIKAVK 70 (91)
T ss_dssp SHHHHHHHHHHHCTTCE--EHHHHHH----HTTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHHcCCCCc--CHHHHHH----HHCCCHHHHHHHHHHHHHCCCEEEec
Confidence 45689999995 354 3355431 34578888999999999999999543
No 121
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=38.48 E-value=19 Score=24.42 Aligned_cols=34 Identities=21% Similarity=0.341 Sum_probs=27.2
Q ss_pred cCCcHHHHHHHhcccccCcccee---eeeceeEEEec
Q psy5978 36 DVPNLQVIKTLQSLKSKGWVNEQ---FAWRHYYWYIT 69 (159)
Q Consensus 36 ~vpNL~Vik~mqSLkSrGyVke~---FaWrh~Yw~LT 69 (159)
.++.=.|..+++.|..+|||... -.-|.+|-.+|
T Consensus 52 ~~~~stvs~~l~~L~~~G~v~r~~~~~d~r~~~~~~~ 88 (152)
T 1ku9_A 52 KISKGNVSMSLKKLEELGFVRKVWIKGERKNYYEAVD 88 (152)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEECCTTCSSCEEEECC
T ss_pred CcCHHHHHHHHHHHHHCCCEEEEecCCCceEEEeecc
Confidence 48888999999999999999875 34566666663
No 122
>3l09_A Putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG, protein structure initiative transcription regulator; 2.81A {Jannaschia SP}
Probab=37.74 E-value=27 Score=29.03 Aligned_cols=42 Identities=19% Similarity=0.353 Sum_probs=35.3
Q ss_pred cCCcHHHHHHHhcccccCccceeeeeceeEEEecchhHHHHH
Q psy5978 36 DVPNLQVIKTLQSLKSKGWVNEQFAWRHYYWYITNDGIEKLR 77 (159)
Q Consensus 36 ~vpNL~Vik~mqSLkSrGyVke~FaWrh~Yw~LTneGI~yLR 77 (159)
.|..=.|--+|.-|+++|++.-.=.=|-.||.||+.|.+-|+
T Consensus 56 Gi~~~avR~Al~RL~~~G~l~~~~~Gr~~~Y~Lt~~g~~~l~ 97 (266)
T 3l09_A 56 GLQPQAMRVALHRLKRDGWVESRRLGRVGFHRLSDSALTQTR 97 (266)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHCCCeeeeecCCcceEEECHHHHHHHH
Confidence 466667888999999999998876666679999999999884
No 123
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=36.88 E-value=30 Score=23.45 Aligned_cols=64 Identities=8% Similarity=0.117 Sum_probs=37.7
Q ss_pred HHHHHHHhhhcccEEEeeCCCCCCCCCccCCcHHHHHHHhcccccCccceeeeecee-EEEecchh
Q psy5978 8 RYIIYEYLFKEGVLVAKKDFHAPKHPELDVPNLQVIKTLQSLKSKGWVNEQFAWRHY-YWYITNDG 72 (159)
Q Consensus 8 r~~IYe~LFkeGV~VakKD~~~~~Hpel~vpNL~Vik~mqSLkSrGyVke~FaWrh~-Yw~LTneG 72 (159)
...|...|.+.|=+- -+|..--.+-+-++..=.|..+++.|..+|||.-.-.=|-+ |..+|.++
T Consensus 12 q~~vL~~L~~~~~~t-~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~~~~r~~~~~~~~~~~ 76 (126)
T 1sd4_A 12 EWDVMNIIWDKKSVS-ANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYKSENIYFYSSNIKED 76 (126)
T ss_dssp HHHHHHHHHHSSSEE-HHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSCHH
T ss_pred HHHHHHHHHhcCCCC-HHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEEeCCCeEEEEEecCHH
Confidence 346777777665432 23432100001124567899999999999999866554544 44455554
No 124
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=36.87 E-value=21 Score=22.94 Aligned_cols=62 Identities=11% Similarity=0.104 Sum_probs=37.0
Q ss_pred hhHHHHHHHhhhcccEEEeeCCCCCCCCCccCCcHHHHHHHhcccccCccceeeeeceeEEEe
Q psy5978 6 KNRYIIYEYLFKEGVLVAKKDFHAPKHPELDVPNLQVIKTLQSLKSKGWVNEQFAWRHYYWYI 68 (159)
Q Consensus 6 ~~r~~IYe~LFkeGV~VakKD~~~~~Hpel~vpNL~Vik~mqSLkSrGyVke~FaWrh~Yw~L 68 (159)
.....|.+.|.++|-+-+ +|..--...+-++..=.|..+++.|..+|||...=.=|.++|++
T Consensus 9 ~~e~~vL~~L~~~~~~t~-~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~~~gr~~~y~~ 70 (82)
T 1p6r_A 9 DAELEVMKVIWKHSSINT-NEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHHKEGRVFVYTP 70 (82)
T ss_dssp HHHHHHHHHHHTSSSEEH-HHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHcCCCCCH-HHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEEecCCEEEEEe
Confidence 345678888887654332 33221000001145667999999999999998665444444443
No 125
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=36.60 E-value=7.3 Score=32.33 Aligned_cols=61 Identities=11% Similarity=0.220 Sum_probs=0.0
Q ss_pred hhHHHHHHHhhhcccEEEeeCCCCCCCCCccCCcHHHHHHHhcccccCccc-eeeeeceeEEEecchhHHHH
Q psy5978 6 KNRYIIYEYLFKEGVLVAKKDFHAPKHPELDVPNLQVIKTLQSLKSKGWVN-EQFAWRHYYWYITNDGIEKL 76 (159)
Q Consensus 6 ~~r~~IYe~LFkeGV~VakKD~~~~~Hpel~vpNL~Vik~mqSLkSrGyVk-e~FaWrh~Yw~LTneGI~yL 76 (159)
..+..|.++|..++-+- .+|.- ..+.|..-.|-..++.|..+|+|+ .. +.-+||++|.+.+
T Consensus 20 ~r~~~iL~~l~~~~~~t-~~eLa----~~l~vs~~Tv~r~l~~Le~~Glv~~~~-----~gi~LT~~G~~~~ 81 (345)
T 2o0m_A 20 QERFQILRNIYWMQPIG-RRSLS----ETMGITERVLRTETDVLKQLNLIEPSK-----SGMTLTERGLEVY 81 (345)
T ss_dssp ------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHcCCCC-HHHHH----HHHCcCHHHHHHHHHHHHHCCCEEEEe-----cceEEcHHHHHHH
Confidence 34456666766554322 23321 235688889999999999999997 43 3488999997544
No 126
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=34.56 E-value=4.9 Score=26.14 Aligned_cols=63 Identities=16% Similarity=0.102 Sum_probs=38.4
Q ss_pred hhhHHHHHHHhhhc--ccEEEeeCCCCC-CCCCccCCcHHHHHHHhcccccCccceeee-eceeEEEe
Q psy5978 5 KKNRYIIYEYLFKE--GVLVAKKDFHAP-KHPELDVPNLQVIKTLQSLKSKGWVNEQFA-WRHYYWYI 68 (159)
Q Consensus 5 k~~r~~IYe~LFke--GV~VakKD~~~~-~Hpel~vpNL~Vik~mqSLkSrGyVke~Fa-Wrh~Yw~L 68 (159)
...|.+|.+.|.+. +-+-+ +|..-- .....+|+--.|...|+.|...|+|...-. -...+|-|
T Consensus 16 t~~r~~IL~~l~~~~~~~~s~-~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~~~~~~~~~~y~~ 82 (83)
T 2fu4_A 16 TLPRLKILEVLQEPDNHHVSA-EDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHNFEGGKSVFEL 82 (83)
T ss_dssp CHHHHHHHHHHTSGGGSSBCH-HHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEEECGGGCEEEEE
T ss_pred CHHHHHHHHHHHhCCCCCCCH-HHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEEEeeCCCceEeec
Confidence 46788999998864 33332 232110 000014667789999999999999987653 34444443
No 127
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=33.31 E-value=7.4 Score=29.56 Aligned_cols=56 Identities=16% Similarity=0.147 Sum_probs=38.4
Q ss_pred CccchhhHHHHHHHhhhcccEEEeeCCCCCCCCCc----cCCcHHHHHHHhcccccCccceeee
Q psy5978 1 MLMPKKNRYIIYEYLFKEGVLVAKKDFHAPKHPEL----DVPNLQVIKTLQSLKSKGWVNEQFA 60 (159)
Q Consensus 1 Mlipk~~r~~IYe~LFkeGV~VakKD~~~~~Hpel----~vpNL~Vik~mqSLkSrGyVke~Fa 60 (159)
|-|+++.+.+|--.++ |....+-....-.+| +||--+|-|+|+.|+..|+|..+=+
T Consensus 20 M~lS~~~~yAlr~L~~----LA~~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~aGlv~s~rG 79 (159)
T 3lwf_A 20 MKITTKGRYGLTITLE----LAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRG 79 (159)
T ss_dssp SCCCHHHHHHHHHHHH----HHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECS
T ss_pred eeCchHHHHHHHHHHH----HHhcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEecC
Confidence 7788888888877765 222112111122233 4999999999999999999987643
No 128
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=32.51 E-value=10 Score=26.59 Aligned_cols=60 Identities=18% Similarity=0.203 Sum_probs=42.6
Q ss_pred hhhHHHHHHHhhhcccEEEeeCCCCCCCCCccCCcHHHHHHHhcccccCccceeeeeceeEEEecch
Q psy5978 5 KKNRYIIYEYLFKEGVLVAKKDFHAPKHPELDVPNLQVIKTLQSLKSKGWVNEQFAWRHYYWYITND 71 (159)
Q Consensus 5 k~~r~~IYe~LFkeGV~VakKD~~~~~Hpel~vpNL~Vik~mqSLkSrGyVke~FaWrh~Yw~LTne 71 (159)
...+..|.++|.++| +-+ ++.- .+|.|+--.|-+.|.+|...|+|..+ +=.-==|+||.+
T Consensus 16 ~~~~~~IL~lL~~~g-~sa-~eLA----k~LgiSk~aVr~~L~~Le~eG~I~~~-~~~PP~W~~~~~ 75 (82)
T 1oyi_A 16 AEIVCEAIKTIGIEG-ATA-AQLT----RQLNMEKREVNKALYDLQRSAMVYSS-DDIPPRWFMTTE 75 (82)
T ss_dssp HHHHHHHHHHHSSST-EEH-HHHH----HHSSSCHHHHHHHHHHHHHHTSSEEC-SSSSCEEESCC-
T ss_pred HHHHHHHHHHHHHcC-CCH-HHHH----HHHCcCHHHHHHHHHHHHHCCCEEeC-CCCCCcceeccC
Confidence 467889999999999 332 3321 14568889999999999999999875 434445666654
No 129
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=32.32 E-value=7.4 Score=26.71 Aligned_cols=62 Identities=23% Similarity=0.327 Sum_probs=41.9
Q ss_pred cchhhHHHHHHHhhhcc---cEEEeeCCCCCCCCCccCCcHHHHHHHhcccccCccceeeeeceeEEEecc
Q psy5978 3 MPKKNRYIIYEYLFKEG---VLVAKKDFHAPKHPELDVPNLQVIKTLQSLKSKGWVNEQFAWRHYYWYITN 70 (159)
Q Consensus 3 ipk~~r~~IYe~LFkeG---V~VakKD~~~~~Hpel~vpNL~Vik~mqSLkSrGyVke~FaWrh~Yw~LTn 70 (159)
+..+....|.++|.++| -+-+ ++.- ..|.|+-=.|-+.|.+|+..|+|.-.= =+--||+++.
T Consensus 7 ~~~~~~~~IL~~L~~~~pg~~~t~-~eLA----~~Lgvsr~tV~~~L~~Le~~G~I~~~g-~~~~~W~i~~ 71 (81)
T 1qbj_A 7 IYQDQEQRILKFLEELGEGKATTA-HDLS----GKLGTPKKEINRVLYSLAKKGKLQKEA-GTPPLWKIAV 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCBCH-HHHH----HHHTCCHHHHHHHHHHHHHTTSEEEES-SSSCEEEEC-
T ss_pred cchHHHHHHHHHHHHcCCCCCcCH-HHHH----HHHCcCHHHHHHHHHHHHHCCCEEecC-CCCCeeEEeC
Confidence 44555678888888766 3322 1111 134588889999999999999997653 3457888764
No 130
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.24 E-value=13 Score=26.63 Aligned_cols=48 Identities=19% Similarity=0.388 Sum_probs=34.1
Q ss_pred hHHHHHHHhhh---cccEEEeeCCCCCCCCCccCCcHHHHHHHhcccccCccceeee
Q psy5978 7 NRYIIYEYLFK---EGVLVAKKDFHAPKHPELDVPNLQVIKTLQSLKSKGWVNEQFA 60 (159)
Q Consensus 7 ~r~~IYe~LFk---eGV~VakKD~~~~~Hpel~vpNL~Vik~mqSLkSrGyVke~Fa 60 (159)
.-..||.++.+ +|+- .+|... .++++.-.|.+++++|.+++|||++=+
T Consensus 38 ~E~lVy~~I~~aGn~GIw--~kdL~~----~tnL~~~~vtkiLK~LE~k~lIK~Vks 88 (95)
T 2yu3_A 38 QEKLVYQIIEDAGNKGIW--SRDVRY----KSNLPLTEINKILKNLESKKLIKAVKS 88 (95)
T ss_dssp HHHHHHHHHHHHTTSCEE--HHHHHH----HHTCCHHHHHHHHHHHHHHTSEEEECC
T ss_pred HHHHHHHHHHHhCCCCCC--HHHHHH----HhCCCHHHHHHHHHHHHhCCCEEEecC
Confidence 44578888875 4443 355432 334677789999999999999998643
No 131
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=31.30 E-value=25 Score=24.83 Aligned_cols=49 Identities=12% Similarity=0.167 Sum_probs=34.5
Q ss_pred hhHHHHHHHhhhccc--EEEeeCCCCCCCCCccCCcHHHHHHHhcccccCccceee
Q psy5978 6 KNRYIIYEYLFKEGV--LVAKKDFHAPKHPELDVPNLQVIKTLQSLKSKGWVNEQF 59 (159)
Q Consensus 6 ~~r~~IYe~LFkeGV--~VakKD~~~~~Hpel~vpNL~Vik~mqSLkSrGyVke~F 59 (159)
.....||..|.+.+- +-+ .+.. ..+.++.=.|..+++.|..+|||...-
T Consensus 26 ~~e~~il~~L~~~~~~~~t~-~eLa----~~l~~s~sTV~r~L~~L~~~GlV~r~~ 76 (123)
T 3r0a_A 26 KADLNVMKSFLNEPDRWIDT-DALS----KSLKLDVSTVQRSVKKLHEKEILQRSQ 76 (123)
T ss_dssp HHHHHHHHHHHHSTTCCEEH-HHHH----HHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHCCCCCcCH-HHHH----HHHCcCHHHHHHHHHHHHHCCCEEeeC
Confidence 456689999886543 332 2221 133588889999999999999998653
No 132
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=29.89 E-value=35 Score=27.37 Aligned_cols=44 Identities=14% Similarity=0.212 Sum_probs=38.1
Q ss_pred cCCcHHHHHHHhcccccCccceee---eeceeEEEecchhHHHHHhh
Q psy5978 36 DVPNLQVIKTLQSLKSKGWVNEQF---AWRHYYWYITNDGIEKLRGV 79 (159)
Q Consensus 36 ~vpNL~Vik~mqSLkSrGyVke~F---aWrh~Yw~LTneGI~yLR~y 79 (159)
.+..=.|..++..|..+|||.-.- -=|-.+=+||++|.+.+.+-
T Consensus 185 ~i~~~tvt~~v~rLe~~GlV~R~~~~~DrR~~~i~LT~~G~~~~~~~ 231 (250)
T 1p4x_A 185 HHKYPQTVRALNNLKKQGYLIKERSTEDERKILIHMDDAQQDHAEQL 231 (250)
T ss_dssp SSCHHHHHHHHHHHHHHTSSEEEECSSSTTCEEEECCHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHHCCCEEeeCCCCCCCeEEEEECHHHHHHHHHH
Confidence 488889999999999999998765 46889999999999988753
No 133
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=27.07 E-value=42 Score=27.97 Aligned_cols=44 Identities=18% Similarity=0.248 Sum_probs=37.0
Q ss_pred cCCcHHHHHHHhcccccCccceeee---eceeEEEecchhHHHHHhh
Q psy5978 36 DVPNLQVIKTLQSLKSKGWVNEQFA---WRHYYWYITNDGIEKLRGV 79 (159)
Q Consensus 36 ~vpNL~Vik~mqSLkSrGyVke~Fa---Wrh~Yw~LTneGI~yLR~y 79 (159)
.+..=.|..+++.|..+|||...-+ =|-.+-+||++|.+-+.+-
T Consensus 431 ~~~~~~~t~~~~~le~~g~v~r~~~~~D~R~~~i~lT~~g~~~~~~~ 477 (487)
T 1hsj_A 431 EFKPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKANIQKL 477 (487)
T ss_dssp CCCHHHHHHHHHHHHTTTTSCCEECCSSSSCCEEECCSSHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEeecCCCCCCCeEEEEECHHHHHHHHHH
Confidence 4778889999999999999987543 5889999999999876653
No 134
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=25.45 E-value=7.6 Score=28.56 Aligned_cols=55 Identities=18% Similarity=0.237 Sum_probs=33.2
Q ss_pred CccchhhHHHHHHHhh--h--cccEEEeeCCCCCCCCCccCCcHHHHHHHhcccccCccceee
Q psy5978 1 MLMPKKNRYIIYEYLF--K--EGVLVAKKDFHAPKHPELDVPNLQVIKTLQSLKSKGWVNEQF 59 (159)
Q Consensus 1 Mlipk~~r~~IYe~LF--k--eGV~VakKD~~~~~Hpel~vpNL~Vik~mqSLkSrGyVke~F 59 (159)
|-++++.+.+|--.++ . ++-.|.-++.. ..++||--+|-|+|+.|+..|+|..+=
T Consensus 4 M~ls~~~~yAl~~L~~La~~~~~~~~s~~~IA----~~~~i~~~~l~kil~~L~~aGlv~s~r 62 (143)
T 3t8r_A 4 MKISTKGRYGLTLMISLAKKEGQGCISLKSIA----EENNLSDLYLEQLVGPLRNAGLIRSVR 62 (143)
T ss_dssp ---CHHHHHHHHHHHHHHTTTTSCCEEHHHHH----HHTTCCHHHHHHHHHHHHHTTSEEECS
T ss_pred cccChHHHHHHHHHHHHHhCCCCCCcCHHHHH----HHHCcCHHHHHHHHHHHHHCCEEEecC
Confidence 7788888888776554 1 11111111110 123599999999999999999998753
No 135
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=23.48 E-value=8.7 Score=27.56 Aligned_cols=54 Identities=24% Similarity=0.294 Sum_probs=36.0
Q ss_pred chhhHHHHHHHhhhcc-cEEEeeCCCC---CCCCCccCCcHHHHHHHhcccccCccceeee
Q psy5978 4 PKKNRYIIYEYLFKEG-VLVAKKDFHA---PKHPELDVPNLQVIKTLQSLKSKGWVNEQFA 60 (159)
Q Consensus 4 pk~~r~~IYe~LFkeG-V~VakKD~~~---~~Hpel~vpNL~Vik~mqSLkSrGyVke~Fa 60 (159)
.++.|.+|++.|.+.. -+-| .|... ...| +|.--.|..+|+.|...|+|.+.-.
T Consensus 9 ~T~qR~~Il~~l~~~~~~~sa-~ei~~~l~~~~~--~is~~TVYR~L~~L~e~Glv~~~~~ 66 (131)
T 2o03_A 9 STRQRAAISTLLETLDDFRSA-QELHDELRRRGE--NIGLTTVYRTLQSMASSGLVDTLHT 66 (131)
T ss_dssp HHHHHHHHHHHHHHCCSCEEH-HHHHHHHHHTTC--CCCHHHHHHHHHHHHTTTSEEEEEC
T ss_pred CCHHHHHHHHHHHhCCCCCCH-HHHHHHHHHhCC--CCCHhhHHHHHHHHHHCCCEEEEEe
Confidence 3578999999998543 3333 33221 0111 2555689999999999999988653
No 136
>3m8e_A Putative DNA-binding protein; winged helix-turn-helix, ARSR family; 2.00A {Bacillus thuringiensis} PDB: 3m9a_A 3m8f_A 4aso_A 4ass_A
Probab=22.59 E-value=85 Score=23.24 Aligned_cols=43 Identities=19% Similarity=0.332 Sum_probs=38.2
Q ss_pred cCCcHHHHHHHhcccccCccceeeeeceeEEEecchhHHHHHh
Q psy5978 36 DVPNLQVIKTLQSLKSKGWVNEQFAWRHYYWYITNDGIEKLRG 78 (159)
Q Consensus 36 ~vpNL~Vik~mqSLkSrGyVke~FaWrh~Yw~LTneGI~yLR~ 78 (159)
.+..-.|.....|+.--||+.|+-.-|---|+|.|-|++-...
T Consensus 71 qlskptvfatvnsfycagyidetrvgrskiytlsdlgveivec 113 (124)
T 3m8e_A 71 QLSKPTVFATVNSFYCAGYIDETRVGRSKIYTLSDLGVEIVEC 113 (124)
T ss_dssp SSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHT
T ss_pred HhcCCceEEEeeeeeeeeecchhhcchheeEehhhcchHHHHH
Confidence 3667788999999999999999999999999999999987654
No 137
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=22.34 E-value=36 Score=25.77 Aligned_cols=63 Identities=13% Similarity=0.117 Sum_probs=43.1
Q ss_pred hhhHHHHHHHhhhcccEEEeeCCCCCCCCCc-cCCcHHHHHHHhcccccCcccee-----eeeceeEEEecchhH
Q psy5978 5 KKNRYIIYEYLFKEGVLVAKKDFHAPKHPEL-DVPNLQVIKTLQSLKSKGWVNEQ-----FAWRHYYWYITNDGI 73 (159)
Q Consensus 5 k~~r~~IYe~LFkeGV~VakKD~~~~~Hpel-~vpNL~Vik~mqSLkSrGyVke~-----FaWrh~Yw~LTneGI 73 (159)
...|..|...|.++...|+ +.. ..| ++|.-.|-..|+-|+.-|+|+.. -+-+.=||.||.+++
T Consensus 22 ~P~Rl~il~~L~~~~~~~~--~l~----~~l~~~~~~~~s~Hl~~L~~aglv~~~~e~~~~g~~er~y~~~~~~~ 90 (182)
T 4g6q_A 22 HPLRWRITQLLIGRSLTTR--ELA----ELLPDVATTTLYRQVGILVKAGVLMVTAEHQVRGAVERTYTLNTQAG 90 (182)
T ss_dssp SHHHHHHHHHTTTSCEEHH--HHH----HHCTTBCHHHHHHHHHHHHHHTSEEEEEEEEETTEEEEEEEECTTTT
T ss_pred CHHHHHHHHHHHhCCCCHH--HHH----HHhcCCCHHHHHHHHHHHHHCCCeEEEEeecccCcceeEEEeccccc
Confidence 4578999999976555442 221 124 36777788999999999999632 223456788998875
No 138
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=21.45 E-value=36 Score=23.78 Aligned_cols=58 Identities=17% Similarity=0.183 Sum_probs=35.6
Q ss_pred HHHHHHhhhcccEEEeeCCCCCCCCCccCCcHHHHHHHhcccccCccceeeeeceeEEE
Q psy5978 9 YIIYEYLFKEGVLVAKKDFHAPKHPELDVPNLQVIKTLQSLKSKGWVNEQFAWRHYYWY 67 (159)
Q Consensus 9 ~~IYe~LFkeGV~VakKD~~~~~Hpel~vpNL~Vik~mqSLkSrGyVke~FaWrh~Yw~ 67 (159)
..|.+.|.++|-+-+ +|..--...+-++..=.|..+|..|..+|+|+..=.=|-+.|+
T Consensus 38 ~~VL~~L~~~~~~t~-~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~~~gR~~~Y~ 95 (99)
T 2k4b_A 38 LIVMRVIWSLGEARV-DEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTEKEGRKFVYR 95 (99)
T ss_dssp SHHHHHHHHHSCEEH-HHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEEEETTEEEEE
T ss_pred HHHHHHHHhCCCCCH-HHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEEeCCCEEEEE
Confidence 367777776664433 4432111111125667899999999999999876544444443
No 139
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=21.30 E-value=27 Score=29.35 Aligned_cols=58 Identities=26% Similarity=0.297 Sum_probs=44.1
Q ss_pred HHHHHHhhhcccEEEeeCCCCCCCCCccCCcHHHHHHHhcccccCccceeeeeceeEEEecch
Q psy5978 9 YIIYEYLFKEGVLVAKKDFHAPKHPELDVPNLQVIKTLQSLKSKGWVNEQFAWRHYYWYITND 71 (159)
Q Consensus 9 ~~IYe~LFkeGV~VakKD~~~~~Hpel~vpNL~Vik~mqSLkSrGyVke~FaWrh~Yw~LTne 71 (159)
.+||..|.+.|-+-+ .+. ...+.||-=.|-.+|++|..+|+|..+-++...|.....+
T Consensus 21 a~vY~~Ll~~g~~t~-~ei----a~~~gv~~~~Vy~~L~~L~~~GlV~~~~g~p~~y~av~p~ 78 (342)
T 3qph_A 21 ILTYWTLLVYGPSTA-KEI----STKSGIPYNRVYDTISSLKLRGFVTEIEGTPKVYAAYSPR 78 (342)
T ss_dssp TSCSHHHHHHHHHHH-SCC----SSSTTSSSCSCCHHHHHHHHHTSEEEECCTTCEEEECCHH
T ss_pred HHHHHHHHHcCCCCH-HHH----HHHHCcCHHHHHHHHHHHHHCCCEEEEcCceeEEEEcCHH
Confidence 357888888887655 332 2345688889999999999999999998887777765544
Done!