Query psy5978
Match_columns 159
No_of_seqs 134 out of 245
Neff 3.8
Searched_HMMs 13730
Date Fri Aug 16 23:27:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5978.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/5978hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3ctaa1 a.4.5.28 (A:5-89) Ta10 96.4 0.001 7.5E-08 44.8 3.4 45 36-80 32-76 (85)
2 d1ub9a_ a.4.5.28 (A:) Hypothet 95.7 0.0026 1.9E-07 42.6 2.5 71 5-80 15-88 (100)
3 d2esha1 a.4.5.61 (A:4-117) Hyp 91.8 0.045 3.2E-06 38.1 2.6 44 37-82 44-93 (114)
4 d1r1ua_ a.4.5.5 (A:) Metal-sen 91.1 0.089 6.5E-06 35.6 3.6 71 3-79 15-86 (94)
5 d1r1ta_ a.4.5.5 (A:) SmtB repr 90.7 0.087 6.3E-06 35.7 3.2 69 4-78 21-90 (98)
6 d1xmaa_ a.4.5.61 (A:) Predicte 89.8 0.12 8.8E-06 35.1 3.3 45 36-80 39-88 (103)
7 d1u2wa1 a.4.5.5 (A:12-119) Cad 89.3 0.052 3.8E-06 37.6 1.1 66 4-74 29-94 (108)
8 d1r7ja_ a.4.5.49 (A:) Sso10a ( 88.9 0.091 6.7E-06 35.9 2.1 39 37-79 30-68 (90)
9 d2fbia1 a.4.5.28 (A:5-140) Pro 88.3 0.22 1.6E-05 34.1 3.8 45 36-80 55-102 (136)
10 d1lnwa_ a.4.5.28 (A:) MexR rep 86.3 0.25 1.8E-05 34.1 3.2 42 37-78 62-106 (141)
11 d3deua1 a.4.5.28 (A:2-141) Tra 85.1 0.28 2.1E-05 33.4 3.0 44 36-79 57-103 (140)
12 d2frha1 a.4.5.28 (A:102-216) P 85.0 0.21 1.5E-05 34.0 2.2 45 36-80 60-107 (115)
13 d2etha1 a.4.5.28 (A:1-140) Put 84.5 0.36 2.6E-05 33.0 3.3 44 36-79 57-103 (140)
14 d1sfxa_ a.4.5.50 (A:) Hypothet 83.1 0.19 1.4E-05 33.9 1.3 66 6-77 20-88 (109)
15 d2bv6a1 a.4.5.28 (A:5-140) Tra 82.2 0.44 3.2E-05 32.5 3.0 46 36-81 59-107 (136)
16 d3broa1 a.4.5.28 (A:3-137) Tra 81.1 0.3 2.2E-05 33.1 1.7 43 36-78 56-101 (135)
17 d1z91a1 a.4.5.28 (A:8-144) Org 79.3 0.37 2.7E-05 33.0 1.7 44 36-79 58-104 (137)
18 d1jgsa_ a.4.5.28 (A:) Multiple 78.1 0.75 5.5E-05 31.4 3.1 43 36-78 59-104 (138)
19 d2a61a1 a.4.5.28 (A:5-143) Tra 77.4 0.92 6.7E-05 30.8 3.3 44 36-79 55-101 (139)
20 d1s3ja_ a.4.5.28 (A:) Putative 77.1 0.84 6.1E-05 31.1 3.0 44 36-79 60-106 (143)
21 d2fbha1 a.4.5.28 (A:8-144) Tra 76.3 0.77 5.6E-05 31.0 2.7 42 37-78 55-99 (137)
22 d1yg2a_ a.4.5.61 (A:) Hypothet 76.0 0.73 5.3E-05 33.0 2.5 50 36-85 33-87 (178)
23 d1p4xa2 a.4.5.28 (A:126-250) S 70.4 1.6 0.00011 30.0 3.1 45 36-80 60-107 (125)
24 d1lj9a_ a.4.5.28 (A:) Transcri 70.0 1.6 0.00012 29.9 3.2 43 36-78 54-99 (144)
25 d2axla1 a.4.5.43 (A:1-144) Wer 67.9 2.5 0.00018 29.9 3.9 43 37-81 62-108 (144)
26 d1hsja1 a.4.5.28 (A:373-487) S 66.2 2.1 0.00016 28.7 3.0 44 36-79 59-105 (115)
27 d2hr3a1 a.4.5.28 (A:2-146) Pro 65.8 2.2 0.00016 28.9 3.1 44 36-79 60-106 (145)
28 d2fxaa1 a.4.5.28 (A:6-167) Pro 63.2 2 0.00015 30.7 2.6 52 36-87 66-120 (162)
29 d2dk5a1 a.4.5.85 (A:8-85) DNA- 59.2 1.6 0.00012 29.0 1.3 49 9-61 16-65 (78)
30 d1q1ha_ a.4.5.41 (A:) Transcri 54.2 2.6 0.00019 28.6 1.7 37 37-73 45-87 (88)
31 d1z05a1 a.4.5.63 (A:10-80) Tra 50.3 0.8 5.9E-05 28.5 -1.4 51 3-58 3-53 (71)
32 d1oywa1 a.4.5.43 (A:407-516) D 50.1 6.6 0.00048 26.2 3.3 49 30-79 50-99 (110)
33 d1ku9a_ a.4.5.36 (A:) DNA-bind 46.3 4.3 0.00031 27.2 1.8 38 36-73 52-92 (151)
34 d1z6ra1 a.4.5.63 (A:12-81) Mlc 43.5 1.2 8.8E-05 27.9 -1.4 50 4-58 3-52 (70)
35 d2d1ha1 a.4.5.50 (A:1-109) Hyp 42.9 10 0.00074 24.5 3.3 67 7-78 22-95 (109)
36 d1whza_ d.50.3.2 (A:) Hypothet 42.4 7.6 0.00055 24.4 2.5 23 1-24 1-23 (70)
37 d1p4xa1 a.4.5.28 (A:1-125) Sta 42.0 6.9 0.0005 26.2 2.4 44 36-79 61-107 (125)
38 d2p4wa1 a.4.5.64 (A:1-194) Tra 37.3 8 0.00058 27.7 2.2 65 3-73 12-81 (194)
39 d2fbka1 a.4.5.28 (A:8-179) Tra 34.7 3.7 0.00027 29.0 -0.1 42 37-78 91-135 (172)
40 d3bz6a1 a.4.5.75 (A:13-96) Hyp 34.1 8.2 0.00059 26.0 1.6 33 30-62 45-77 (84)
41 d1nw3a_ c.66.1.31 (A:) Catalyt 28.5 7.2 0.00053 30.2 0.6 72 8-80 249-322 (328)
42 d2f2ea1 a.4.5.69 (A:5-146) Hyp 27.8 13 0.00095 26.2 1.9 42 35-76 43-86 (142)
43 d1xpja_ c.108.1.18 (A:) Hypoth 26.1 8.5 0.00062 26.7 0.6 22 36-57 23-44 (124)
44 d2fswa1 a.4.5.69 (A:3-104) Hyp 25.4 19 0.0014 23.8 2.3 40 37-76 46-88 (102)
45 d1ylfa1 a.4.5.55 (A:5-142) Hyp 25.4 9.6 0.0007 25.8 0.8 32 36-69 34-65 (138)
46 d1xd7a_ a.4.5.55 (A:) Hypothet 25.4 8.8 0.00064 25.7 0.5 33 36-70 29-61 (127)
47 d1tf5a1 a.162.1.1 (A:227-348) 23.5 15 0.0011 25.3 1.5 37 41-83 10-50 (122)
48 d1stza1 a.4.5.51 (A:14-100) He 23.4 8.6 0.00063 25.3 0.2 66 9-78 11-76 (87)
49 d2f5ga1 d.58.57.1 (A:2-131) Pu 23.1 15 0.0011 25.3 1.4 54 18-72 46-111 (130)
50 d1nkta1 a.162.1.1 (A:226-349) 22.7 19 0.0013 24.9 1.9 36 41-82 12-51 (124)
51 d2es9a1 a.247.1.1 (A:11-107) H 22.6 17 0.0012 24.7 1.5 15 69-84 27-42 (97)
52 d2g9wa1 a.4.5.39 (A:3-124) Hyp 21.8 15 0.0011 24.5 1.3 60 9-69 10-71 (122)
53 d1yyva1 a.4.5.69 (A:9-122) Put 21.5 29 0.0021 23.3 2.7 40 37-76 50-92 (114)
54 d1unqa_ b.55.1.1 (A:) Rac-alph 21.4 15 0.0011 22.7 1.0 14 60-73 22-35 (118)
55 d1u0sa_ d.58.24.1 (A:) CheY-bi 20.8 30 0.0022 22.3 2.6 50 37-86 17-78 (86)
No 1
>d3ctaa1 a.4.5.28 (A:5-89) Ta1064 (RFK), N-terminal domain {Thermoplasma acidophilum [TaxId: 2303]}
Probab=96.44 E-value=0.001 Score=44.83 Aligned_cols=45 Identities=16% Similarity=0.305 Sum_probs=42.2
Q ss_pred cCCcHHHHHHHhcccccCccceeeeeceeEEEecchhHHHHHhhc
Q psy5978 36 DVPNLQVIKTLQSLKSKGWVNEQFAWRHYYWYITNDGIEKLRGVL 80 (159)
Q Consensus 36 ~vpNL~Vik~mqSLkSrGyVke~FaWrh~Yw~LTneGI~yLR~yL 80 (159)
.+++=.|..+++.|...|||+-..-.|..++.||++|.+.|++.+
T Consensus 32 ~i~~~~vs~~l~~Le~~GlV~r~~D~R~~~i~LT~~G~~~l~~~~ 76 (85)
T d3ctaa1 32 GISQQSASRIIIDLEKNGYITRTVTKRGQILNITEKGLDVLYTEF 76 (85)
T ss_dssp TSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCeeeecccccccceECHHHHHHHHHHH
Confidence 488889999999999999999999999999999999999999765
No 2
>d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=95.68 E-value=0.0026 Score=42.60 Aligned_cols=71 Identities=18% Similarity=0.157 Sum_probs=55.0
Q ss_pred hhhHHHHHHHhhhcccEEEeeCCCCCCCCCccCCcHHHHHHHhcccccCccceee---eeceeEEEecchhHHHHHhhc
Q psy5978 5 KKNRYIIYEYLFKEGVLVAKKDFHAPKHPELDVPNLQVIKTLQSLKSKGWVNEQF---AWRHYYWYITNDGIEKLRGVL 80 (159)
Q Consensus 5 k~~r~~IYe~LFkeGV~VakKD~~~~~Hpel~vpNL~Vik~mqSLkSrGyVke~F---aWrh~Yw~LTneGI~yLR~yL 80 (159)
..+|..|..+|...|=+-+ .|.. ..+.+..=.|-..++.|...|||+..- ..|-.||.||++|.+.+.+++
T Consensus 15 ~p~r~~IL~~L~~~~~~~~-~eLa----~~l~is~~~vs~~l~~L~~~glV~~~~~~~d~r~~~~~LT~~G~~~~~~~~ 88 (100)
T d1ub9a_ 15 NPVRLGIMIFLLPRRKAPF-SQIQ----KVLDLTPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGMEEAKRFL 88 (100)
T ss_dssp SHHHHHHHHHHHHHSEEEH-HHHH----HHTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHHHHHHHH
T ss_pred CHHHHHHHHHhccCCCeeH-HHHH----HHHhhccccccHHHHHHhhhceeEEEEcCcCCccccccCCHHHHHHHHHHH
Confidence 3568899999987765443 3321 234578888899999999999998554 488999999999998888765
No 3
>d2esha1 a.4.5.61 (A:4-117) Hypothetical protein TM0937 {Thermotoga maritima [TaxId: 2336]}
Probab=91.80 E-value=0.045 Score=38.07 Aligned_cols=44 Identities=23% Similarity=0.381 Sum_probs=35.3
Q ss_pred CCcHHHHHHHhcccccCccceeeeece------eEEEecchhHHHHHhhcCC
Q psy5978 37 VPNLQVIKTLQSLKSKGWVNEQFAWRH------YYWYITNDGIEKLRGVLNI 82 (159)
Q Consensus 37 vpNL~Vik~mqSLkSrGyVke~FaWrh------~Yw~LTneGI~yLR~yLhL 82 (159)
++.=.|.-+++.|...|+|+. -|.. =||.||++|.++|.+.+.-
T Consensus 44 ~~~gtiY~~L~rLe~~G~I~~--~~~~~~g~~rk~Y~IT~~G~~~l~~~~~~ 93 (114)
T d2esha1 44 GHMGNIYRVLADLEESGFLST--EWDTTVSPPRKIYRITPQGKLYLREILRS 93 (114)
T ss_dssp CCCCCHHHHHHHHHHTTSEEE--EEECSSSSCEEEEEECHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHCCCeEE--EeecCCCCCcEEEEECHHHHHHHHHHHHH
Confidence 344467889999999999975 3653 4899999999999987754
No 4
>d1r1ua_ a.4.5.5 (A:) Metal-sensing transcriptional repressor CzrA {Staphylococcus aureus [TaxId: 1280]}
Probab=91.13 E-value=0.089 Score=35.56 Aligned_cols=71 Identities=20% Similarity=0.199 Sum_probs=53.5
Q ss_pred cchhhHHHHHHHhhhcccEEEeeCCCCCCCCCccCCcHHHHHHHhcccccCccceeeeeceeEEEecchhH-HHHHhh
Q psy5978 3 MPKKNRYIIYEYLFKEGVLVAKKDFHAPKHPELDVPNLQVIKTLQSLKSKGWVNEQFAWRHYYWYITNDGI-EKLRGV 79 (159)
Q Consensus 3 ipk~~r~~IYe~LFkeGV~VakKD~~~~~Hpel~vpNL~Vik~mqSLkSrGyVke~FaWrh~Yw~LTneGI-~yLR~y 79 (159)
+...+|..|...|.+.-..|. |. ...++++.=.|-..|+-|+.-|+|+..=-=++.||.|+++-| +.|.+.
T Consensus 15 L~d~~Rl~Il~~L~~~~~~v~--el----~~~l~~s~~~vS~HL~~L~~~glv~~~r~G~~~~Y~l~~~~v~~ll~~~ 86 (94)
T d1r1ua_ 15 LGDYNRIRIMELLSVSEASVG--HI----SHQLNLSQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLDDIHVATMLKQA 86 (94)
T ss_dssp TCSHHHHHHHHHHHHCCBCHH--HH----HHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEESSHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHcCCccHH--HH----HHHHCCCHHHHHHHHHHHHHCCceEEEEECCEEEEEECcHHHHHHHHHH
Confidence 345789999998875443331 21 123357888899999999999999999999999999999987 344543
No 5
>d1r1ta_ a.4.5.5 (A:) SmtB repressor {Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]}
Probab=90.74 E-value=0.087 Score=35.73 Aligned_cols=69 Identities=22% Similarity=0.300 Sum_probs=52.2
Q ss_pred chhhHHHHHHHhhhcccEEEeeCCCCCCCCCccCCcHHHHHHHhcccccCccceeeeeceeEEEecchhHH-HHHh
Q psy5978 4 PKKNRYIIYEYLFKEGVLVAKKDFHAPKHPELDVPNLQVIKTLQSLKSKGWVNEQFAWRHYYWYITNDGIE-KLRG 78 (159)
Q Consensus 4 pk~~r~~IYe~LFkeGV~VakKD~~~~~Hpel~vpNL~Vik~mqSLkSrGyVke~FaWrh~Yw~LTneGI~-yLR~ 78 (159)
...+|..|...|.+....| .|.. ..++++.=.|-+.|+-|+.-|+|+..-.=++.||.|+++.|. .+.+
T Consensus 21 ~~p~Rl~Il~~L~~~~~~v--~ela----~~l~is~stvS~HL~~L~~aglV~~~r~G~~~~Y~l~~~~i~~l~~~ 90 (98)
T d1r1ta_ 21 ADPNRLRLLSLLARSELCV--GDLA----QAIGVSESAVSHQLRSLRNLRLVSYRKQGRHVYYQLQDHHIVALYQN 90 (98)
T ss_dssp CCHHHHHHHHHHTTCCBCH--HHHH----HHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEESSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCcCH--HHHH----HHHCcCHHHHHHHHHHHHHCCceEEEEECCEEEEEEChHHHHHHHHH
Confidence 3568999999887654433 1211 123588888999999999999999988889999999999874 3443
No 6
>d1xmaa_ a.4.5.61 (A:) Predicted transcriptional regulator {Clostridium thermocellum [TaxId: 1515]}
Probab=89.81 E-value=0.12 Score=35.14 Aligned_cols=45 Identities=18% Similarity=0.395 Sum_probs=34.3
Q ss_pred cCCcHHHHHHHhcccccCccceeeee-----ceeEEEecchhHHHHHhhc
Q psy5978 36 DVPNLQVIKTLQSLKSKGWVNEQFAW-----RHYYWYITNDGIEKLRGVL 80 (159)
Q Consensus 36 ~vpNL~Vik~mqSLkSrGyVke~FaW-----rh~Yw~LTneGI~yLR~yL 80 (159)
.+..=.+.-+|+.|...|+|.....= .=-||.||++|.++|.+.+
T Consensus 39 ~is~gslY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~iT~~G~~~l~~~~ 88 (103)
T d1xmaa_ 39 VIKETTLYSAFARLEKNGYIKSYYGEETQGKRRTYYRITPEGIKYYKQKC 88 (103)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEEEECHHHHHHHHHHH
T ss_pred cCCCCchHHHHHHHHHCCCeEEEeeccCCCCCceEEEECHHHHHHHHHHH
Confidence 45666889999999999999843211 1248999999999997654
No 7
>d1u2wa1 a.4.5.5 (A:12-119) Cadmium efflux system accessory protein CadC {Staphylococcus aureus [TaxId: 1280]}
Probab=89.32 E-value=0.052 Score=37.57 Aligned_cols=66 Identities=21% Similarity=0.184 Sum_probs=48.7
Q ss_pred chhhHHHHHHHhhhcccEEEeeCCCCCCCCCccCCcHHHHHHHhcccccCccceeeeeceeEEEecchhHH
Q psy5978 4 PKKNRYIIYEYLFKEGVLVAKKDFHAPKHPELDVPNLQVIKTLQSLKSKGWVNEQFAWRHYYWYITNDGIE 74 (159)
Q Consensus 4 pk~~r~~IYe~LFkeGV~VakKD~~~~~Hpel~vpNL~Vik~mqSLkSrGyVke~FaWrh~Yw~LTneGI~ 74 (159)
...+|..|...|.++|=+.+ .+.. ..++++.=.|-+.|+-|+.-|+|+..=-=++.||.|+++.|.
T Consensus 29 adp~Rl~Il~~L~~~~~~~v-~ela----~~l~~s~s~vS~HL~~L~~aGlv~~~r~G~~~~Y~l~~~~i~ 94 (108)
T d1u2wa1 29 ADENRAKITYALCQDEELCV-CDIA----NILGVTIANASHHLRTLYKQGVVNFRKEGKLALYSLGDEHIR 94 (108)
T ss_dssp HSHHHHHHHHHHHHSSCEEH-HHHH----HHHTCCHHHHHHHHHHHHHTTSEEEC----CCEEEESCHHHH
T ss_pred CCHHHHHHHHHHHhCCCccH-HHHH----HHHccChhHHHHHHHHHHHCCeeEEEEECCEEEEEECHHHHH
Confidence 45689999999997764432 1111 124588889999999999999999999999999999999874
No 8
>d1r7ja_ a.4.5.49 (A:) Sso10a (SSO10449) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=88.90 E-value=0.091 Score=35.91 Aligned_cols=39 Identities=13% Similarity=0.182 Sum_probs=31.4
Q ss_pred CCcHHHHHHHhcccccCccceeeeeceeEEEecchhHHHHHhh
Q psy5978 37 VPNLQVIKTLQSLKSKGWVNEQFAWRHYYWYITNDGIEKLRGV 79 (159)
Q Consensus 37 vpNL~Vik~mqSLkSrGyVke~FaWrh~Yw~LTneGI~yLR~y 79 (159)
+.---+.+.++-|.++|+|++. + -=|+||++|.+||.+|
T Consensus 30 Ls~~~~~kyl~~L~~~GLI~~~---~-~~Y~iT~kG~~~L~~~ 68 (90)
T d1r7ja_ 30 LSYALTGRYIKMLMDLEIIRQE---G-KQYMLTKKGEELLEDI 68 (90)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEE---T-TEEEECHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCeeec---C-CEEEECccHHHHHHHH
Confidence 5555678899999999999753 2 2479999999999876
No 9
>d2fbia1 a.4.5.28 (A:5-140) Probable transcriptional regulator PA4135 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=88.34 E-value=0.22 Score=34.07 Aligned_cols=45 Identities=18% Similarity=0.160 Sum_probs=39.0
Q ss_pred cCCcHHHHHHHhcccccCccceeeeec---eeEEEecchhHHHHHhhc
Q psy5978 36 DVPNLQVIKTLQSLKSKGWVNEQFAWR---HYYWYITNDGIEKLRGVL 80 (159)
Q Consensus 36 ~vpNL~Vik~mqSLkSrGyVke~FaWr---h~Yw~LTneGI~yLR~yL 80 (159)
.|..=.|.++++.|..+|||....+.. -.+.+||++|.+.+.+..
T Consensus 55 ~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~lT~~G~~~~~~~~ 102 (136)
T d2fbia1 55 CILRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCFVSMS 102 (136)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEEEeecCccCchhhhccCHHHHHHHHHHH
Confidence 477788999999999999999988876 499999999999887643
No 10
>d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]}
Probab=86.28 E-value=0.25 Score=34.12 Aligned_cols=42 Identities=12% Similarity=0.325 Sum_probs=37.1
Q ss_pred CCcHHHHHHHhcccccCccceeee---eceeEEEecchhHHHHHh
Q psy5978 37 VPNLQVIKTLQSLKSKGWVNEQFA---WRHYYWYITNDGIEKLRG 78 (159)
Q Consensus 37 vpNL~Vik~mqSLkSrGyVke~Fa---Wrh~Yw~LTneGI~yLR~ 78 (159)
+.-=.|-++++.|..+|||..+-+ =|..+-+||++|.+.+.+
T Consensus 62 ~~~~~vsr~l~~L~~~G~v~r~~~~~D~R~~~l~lT~~G~~~~~~ 106 (141)
T d1lnwa_ 62 RDKALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIHQH 106 (141)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEEECSSSSSSEEEEECHHHHHHHHH
T ss_pred ccHhHHHHHHHHHHHhhceeeeccCCCCcchhhccCHHHHHHHHH
Confidence 677789999999999999987776 579999999999998775
No 11
>d3deua1 a.4.5.28 (A:2-141) Transcriptional regulator SlyA {Salmonella typhimurium [TaxId: 90371]}
Probab=85.15 E-value=0.28 Score=33.43 Aligned_cols=44 Identities=16% Similarity=0.232 Sum_probs=34.3
Q ss_pred cCCcHHHHHHHhcccccCccceeeeece---eEEEecchhHHHHHhh
Q psy5978 36 DVPNLQVIKTLQSLKSKGWVNEQFAWRH---YYWYITNDGIEKLRGV 79 (159)
Q Consensus 36 ~vpNL~Vik~mqSLkSrGyVke~FaWrh---~Yw~LTneGI~yLR~y 79 (159)
.+..=.|.++++.|.++|||...-.... .+..||++|.+++.+.
T Consensus 57 ~i~~~~vs~~l~~L~~~glI~~~~~~~D~R~~~l~lT~~G~~~~~~~ 103 (140)
T d3deua1 57 GIEQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLIAEM 103 (140)
T ss_dssp TSCHHHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHHHHH
T ss_pred CCCHhHHHHHHHHHHhCCCEEecccCCCCCceeeEECHHHHHHHHHH
Confidence 3777789999999999999988777654 6999999999998753
No 12
>d2frha1 a.4.5.28 (A:102-216) Pleiotropic regulator of virulence genes, SarA {Staphylococcus aureus [TaxId: 1280]}
Probab=85.00 E-value=0.21 Score=33.98 Aligned_cols=45 Identities=16% Similarity=0.294 Sum_probs=39.5
Q ss_pred cCCcHHHHHHHhcccccCcccee---eeeceeEEEecchhHHHHHhhc
Q psy5978 36 DVPNLQVIKTLQSLKSKGWVNEQ---FAWRHYYWYITNDGIEKLRGVL 80 (159)
Q Consensus 36 ~vpNL~Vik~mqSLkSrGyVke~---FaWrh~Yw~LTneGI~yLR~yL 80 (159)
.+..=.|.++++.|..+|||... -.-|-.+-+||++|.+++.+.+
T Consensus 60 ~~~~~tvs~~i~~Le~~gli~r~~~~~D~R~~~i~LT~~G~~~~~~~~ 107 (115)
T d2frha1 60 NYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKIESLL 107 (115)
T ss_dssp SSHHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHHHHHH
T ss_pred CCCHhHHHHHHHHHHhhhhheeeecccCCceEEEEECHHHHHHHHHHH
Confidence 47888899999999999999877 6778899999999999988753
No 13
>d2etha1 a.4.5.28 (A:1-140) Putative transcriptional regulator TM0816 {Thermotoga maritima [TaxId: 2336]}
Probab=84.51 E-value=0.36 Score=32.95 Aligned_cols=44 Identities=20% Similarity=0.295 Sum_probs=38.9
Q ss_pred cCCcHHHHHHHhcccccCccceeeeece---eEEEecchhHHHHHhh
Q psy5978 36 DVPNLQVIKTLQSLKSKGWVNEQFAWRH---YYWYITNDGIEKLRGV 79 (159)
Q Consensus 36 ~vpNL~Vik~mqSLkSrGyVke~FaWrh---~Yw~LTneGI~yLR~y 79 (159)
.|..=.|.+.+..|.++|||...-+... .+..||++|.+.+...
T Consensus 57 ~i~~~~vs~~v~~L~~~gli~r~~~~~D~R~~~l~lT~~G~~~~~~~ 103 (140)
T d2etha1 57 STTKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIFGEI 103 (140)
T ss_dssp TSCHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHCCCeeeeecccccchhhhhcCHHHHHHHHHH
Confidence 4788889999999999999999888877 8999999999887653
No 14
>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=83.05 E-value=0.19 Score=33.87 Aligned_cols=66 Identities=23% Similarity=0.426 Sum_probs=45.8
Q ss_pred hhHHHHHHHhhhcccEEEeeCCCCCCCCCccCCcHHHHHHHhcccccCccceeee---eceeEEEecchhHHHHH
Q psy5978 6 KNRYIIYEYLFKEGVLVAKKDFHAPKHPELDVPNLQVIKTLQSLKSKGWVNEQFA---WRHYYWYITNDGIEKLR 77 (159)
Q Consensus 6 ~~r~~IYe~LFkeGV~VakKD~~~~~Hpel~vpNL~Vik~mqSLkSrGyVke~Fa---Wrh~Yw~LTneGI~yLR 77 (159)
.+...||..|.+.|-+-+. +.. ..+.|+.=.|..++++|.++|||..+.. ++-++|..|+-. +.|.
T Consensus 20 ~~e~~v~~~L~~~g~~t~~-eia----~~~~i~~~~v~~~l~~L~~~GlV~r~~~~~~~r~~~~~a~~~~-e~l~ 88 (109)
T d1sfxa_ 20 PSDVRIYSLLLERGGMRVS-EIA----RELDLSARFVRDRLKVLLKRGFVRREIVEKGWVGYIYSAEKPE-KVLK 88 (109)
T ss_dssp HHHHHHHHHHHHHCCBCHH-HHH----HHHTCCHHHHHHHHHHHHHTTSEEEEEEESSSEEEEEEECCHH-HHHH
T ss_pred HHHHHHHHHHHhcCCCCHH-HHH----HHhCCCcchHHHHHHHHHhCCCEEEEeccCCCccccccCCCHH-HHHH
Confidence 4566899999988766542 211 1235999999999999999999987653 455556666543 4443
No 15
>d2bv6a1 a.4.5.28 (A:5-140) Transcriptional regulator MgrA {Staphylococcus aureus [TaxId: 1280]}
Probab=82.23 E-value=0.44 Score=32.49 Aligned_cols=46 Identities=11% Similarity=0.086 Sum_probs=37.4
Q ss_pred cCCcHHHHHHHhcccccCccceeeee---ceeEEEecchhHHHHHhhcC
Q psy5978 36 DVPNLQVIKTLQSLKSKGWVNEQFAW---RHYYWYITNDGIEKLRGVLN 81 (159)
Q Consensus 36 ~vpNL~Vik~mqSLkSrGyVke~FaW---rh~Yw~LTneGI~yLR~yLh 81 (159)
.++.=.|..++++|.++|||...-+. |-.+.+||++|.+.+.+...
T Consensus 59 ~~~~~~~s~~l~~L~~~Gli~r~~~~~D~R~~~l~lT~~G~~~~~~~~~ 107 (136)
T d2bv6a1 59 ALDTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIRPELSN 107 (136)
T ss_dssp TCCTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHHHHHTT
T ss_pred CCCHhHHHHHHHHHHHCCCEEEeecCCcccchhhccCHHHHHHHHHHHH
Confidence 36666789999999999999877663 66899999999998775443
No 16
>d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]}
Probab=81.06 E-value=0.3 Score=33.09 Aligned_cols=43 Identities=12% Similarity=0.036 Sum_probs=36.3
Q ss_pred cCCcHHHHHHHhcccccCccceeeee---ceeEEEecchhHHHHHh
Q psy5978 36 DVPNLQVIKTLQSLKSKGWVNEQFAW---RHYYWYITNDGIEKLRG 78 (159)
Q Consensus 36 ~vpNL~Vik~mqSLkSrGyVke~FaW---rh~Yw~LTneGI~yLR~ 78 (159)
.+..-.|-+++++|..+|||...-+. |-.+.+||++|.+.+.+
T Consensus 56 ~~~~~~vs~~l~~L~~~g~v~r~~~~~D~R~~~i~lT~~G~~~~~~ 101 (135)
T d3broa1 56 SIKSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLETI 101 (135)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTHHH
T ss_pred CcCHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccHHHHHHHHH
Confidence 37777889999999999999887764 56799999999987664
No 17
>d1z91a1 a.4.5.28 (A:8-144) Organic hydroperoxide resistance transcriptional regulator OhrR {Bacillus subtilis [TaxId: 1423]}
Probab=79.34 E-value=0.37 Score=32.98 Aligned_cols=44 Identities=14% Similarity=0.151 Sum_probs=38.0
Q ss_pred cCCcHHHHHHHhcccccCccceeee---eceeEEEecchhHHHHHhh
Q psy5978 36 DVPNLQVIKTLQSLKSKGWVNEQFA---WRHYYWYITNDGIEKLRGV 79 (159)
Q Consensus 36 ~vpNL~Vik~mqSLkSrGyVke~Fa---Wrh~Yw~LTneGI~yLR~y 79 (159)
.++.=.|.++++.|..+|||...-+ .|-.+.+||++|.+.+.+.
T Consensus 58 ~i~~~~vsr~i~~L~~~glv~r~~~~~D~R~~~i~lT~~G~~~~~~~ 104 (137)
T d1z91a1 58 YLDSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKEKA 104 (137)
T ss_dssp TCCHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGGGGT
T ss_pred CcCHHHHHHHHHHHhhccceEEeecCCCCCeEEEEECHHHHHHHHHH
Confidence 4788889999999999999998877 6779999999998876653
No 18
>d1jgsa_ a.4.5.28 (A:) Multiple antibiotic resistance repressor, MarR {Escherichia coli [TaxId: 562]}
Probab=78.08 E-value=0.75 Score=31.40 Aligned_cols=43 Identities=23% Similarity=0.227 Sum_probs=37.4
Q ss_pred cCCcHHHHHHHhcccccCccceeeee---ceeEEEecchhHHHHHh
Q psy5978 36 DVPNLQVIKTLQSLKSKGWVNEQFAW---RHYYWYITNDGIEKLRG 78 (159)
Q Consensus 36 ~vpNL~Vik~mqSLkSrGyVke~FaW---rh~Yw~LTneGI~yLR~ 78 (159)
.++.=.|-.+++.|..+|||..+-+. |-.++.||++|.+.+.+
T Consensus 59 ~i~~~~vs~~v~~L~~~glv~r~~~~~D~R~~~i~lT~~G~~~~~~ 104 (138)
T d1jgsa_ 59 SVDLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAICEQ 104 (138)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHHHH
T ss_pred CCCHhHHHHHHHHHhhCCCEEEeeccCCCCeeEEEECHHHHHHHHH
Confidence 38888899999999999999887775 77899999999987754
No 19
>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]}
Probab=77.44 E-value=0.92 Score=30.81 Aligned_cols=44 Identities=25% Similarity=0.385 Sum_probs=38.2
Q ss_pred cCCcHHHHHHHhcccccCccceeeee---ceeEEEecchhHHHHHhh
Q psy5978 36 DVPNLQVIKTLQSLKSKGWVNEQFAW---RHYYWYITNDGIEKLRGV 79 (159)
Q Consensus 36 ~vpNL~Vik~mqSLkSrGyVke~FaW---rh~Yw~LTneGI~yLR~y 79 (159)
.+..=.|..+++.|..+|||...=+. |-.+.+||++|.+.+.+-
T Consensus 55 ~i~~~tvs~~l~~L~~~gli~r~~~~~D~R~~~i~LT~~G~~~~~~~ 101 (139)
T d2a61a1 55 GVAKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVIEKV 101 (139)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHH
T ss_pred CCCcccchHHHHHHHhcCeeeeeeccCCCCeEEEEECHHHHHHHHHH
Confidence 37888899999999999999988775 679999999999987753
No 20
>d1s3ja_ a.4.5.28 (A:) Putative transcriptional regulator YusO {Bacillus subtilis [TaxId: 1423]}
Probab=77.09 E-value=0.84 Score=31.10 Aligned_cols=44 Identities=20% Similarity=0.203 Sum_probs=37.7
Q ss_pred cCCcHHHHHHHhcccccCccceeee---eceeEEEecchhHHHHHhh
Q psy5978 36 DVPNLQVIKTLQSLKSKGWVNEQFA---WRHYYWYITNDGIEKLRGV 79 (159)
Q Consensus 36 ~vpNL~Vik~mqSLkSrGyVke~Fa---Wrh~Yw~LTneGI~yLR~y 79 (159)
.+..-.|..+++.|..+|||.-.-+ =|..|-.||++|.+.+.+.
T Consensus 60 ~i~~~~vs~~l~~L~~~glv~r~~~~~D~R~~~v~lT~~G~~~~~~~ 106 (143)
T d1s3ja_ 60 EVKPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKFEEV 106 (143)
T ss_dssp TSCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhhhheeeeecCCCCceEEEECHHHHHHHHHH
Confidence 4888899999999999999986655 4679999999999988763
No 21
>d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=76.33 E-value=0.77 Score=30.97 Aligned_cols=42 Identities=17% Similarity=0.101 Sum_probs=36.7
Q ss_pred CCcHHHHHHHhcccccCccceeeeec---eeEEEecchhHHHHHh
Q psy5978 37 VPNLQVIKTLQSLKSKGWVNEQFAWR---HYYWYITNDGIEKLRG 78 (159)
Q Consensus 37 vpNL~Vik~mqSLkSrGyVke~FaWr---h~Yw~LTneGI~yLR~ 78 (159)
+..=.|.+++..|..+|||..+-++. -.+..||++|.+.+.+
T Consensus 55 ~~~~~vs~~v~~L~~~gli~r~~~~~D~R~~~i~lT~~G~~~~~~ 99 (137)
T d2fbha1 55 VEGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLIAD 99 (137)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCccccCCCCCCCchhhhcCHHHHHHHHH
Confidence 66677999999999999999998864 5789999999988765
No 22
>d1yg2a_ a.4.5.61 (A:) Hypothetical protein AphA {Vibrio cholerae [TaxId: 666]}
Probab=75.96 E-value=0.73 Score=33.00 Aligned_cols=50 Identities=20% Similarity=0.296 Sum_probs=38.5
Q ss_pred cCCcHHHHHHHhcccccCccceeee-e--c--eeEEEecchhHHHHHhhcCCCCC
Q psy5978 36 DVPNLQVIKTLQSLKSKGWVNEQFA-W--R--HYYWYITNDGIEKLRGVLNIPDE 85 (159)
Q Consensus 36 ~vpNL~Vik~mqSLkSrGyVke~Fa-W--r--h~Yw~LTneGI~yLR~yLhLP~e 85 (159)
++..=+|..+++.|...|||...-. . + =-.|.||++|-+.|++.|.-|.+
T Consensus 33 ~~s~g~iY~~L~kLe~~Gli~~~~~~~~~~~~rk~Y~iT~~Gr~~l~~wl~~~~~ 87 (178)
T d1yg2a_ 33 KASHQQVYRELNKMGEQGLVTCVLEPQEGKPDRKVYSITQAGRSALGEWFDQPTA 87 (178)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEECCC---------CEEECHHHHHHHHHHHHSCCC
T ss_pred CCCCCcHHHHHHHHHHCCCeEEEeeecCCCCCceEEEECHHHHHHHHHHHhcccc
Confidence 4677789999999999999974321 0 1 13689999999999999987765
No 23
>d1p4xa2 a.4.5.28 (A:126-250) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]}
Probab=70.42 E-value=1.6 Score=30.01 Aligned_cols=45 Identities=16% Similarity=0.254 Sum_probs=38.4
Q ss_pred cCCcHHHHHHHhcccccCccceeeee---ceeEEEecchhHHHHHhhc
Q psy5978 36 DVPNLQVIKTLQSLKSKGWVNEQFAW---RHYYWYITNDGIEKLRGVL 80 (159)
Q Consensus 36 ~vpNL~Vik~mqSLkSrGyVke~FaW---rh~Yw~LTneGI~yLR~yL 80 (159)
.++.=.|..+++.|..+|||...-+. |-.+-+||++|.+++.+.+
T Consensus 60 ~~~~~~vs~~v~~L~~~glV~r~~~~~D~R~v~i~LT~~G~~~~~~l~ 107 (125)
T d1p4xa2 60 HHKYPQTVRALNNLKKQGYLIKERSTEDERKILIHMDDAQQDHAEQLL 107 (125)
T ss_dssp SSCHHHHHHHHHHHHHHTSSEEEECSSSTTCEEEECCHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHhccCEeeeecCCCCCeEEEEECHHHHHHHHHHH
Confidence 48888999999999999999765544 7789999999999988754
No 24
>d1lj9a_ a.4.5.28 (A:) Transcriptional regulator SlyA {Enterococcus faecalis [TaxId: 1351]}
Probab=70.00 E-value=1.6 Score=29.87 Aligned_cols=43 Identities=16% Similarity=0.211 Sum_probs=37.0
Q ss_pred cCCcHHHHHHHhcccccCccceeeee---ceeEEEecchhHHHHHh
Q psy5978 36 DVPNLQVIKTLQSLKSKGWVNEQFAW---RHYYWYITNDGIEKLRG 78 (159)
Q Consensus 36 ~vpNL~Vik~mqSLkSrGyVke~FaW---rh~Yw~LTneGI~yLR~ 78 (159)
.|..=.|-++++.|.++|||...-+. |-.+-+||++|.+.+.+
T Consensus 54 ~i~~~tvs~~l~~L~~~glI~r~~~~~D~R~~~l~LT~~G~~~~~~ 99 (144)
T d1lj9a_ 54 KVDRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVYPI 99 (144)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHH
T ss_pred CccHhhHHHHHHHHHhhhcccccCCCCCCCccccccCHHHHHHHHH
Confidence 48888999999999999999888875 56799999999877654
No 25
>d2axla1 a.4.5.43 (A:1-144) Werner syndrome ATP-dependent helicase WRN {Human (Homo sapiens) [TaxId: 9606]}
Probab=67.91 E-value=2.5 Score=29.85 Aligned_cols=43 Identities=16% Similarity=0.058 Sum_probs=34.9
Q ss_pred CCcHHHHHHHhcccccCccceeeeecee----EEEecchhHHHHHhhcC
Q psy5978 37 VPNLQVIKTLQSLKSKGWVNEQFAWRHY----YWYITNDGIEKLRGVLN 81 (159)
Q Consensus 37 vpNL~Vik~mqSLkSrGyVke~FaWrh~----Yw~LTneGI~yLR~yLh 81 (159)
.+.=..-.+++.|...||++|.- .++ |.-||++|.++|+..-.
T Consensus 62 ~s~~~w~~li~qli~~G~L~e~~--~~~~~~~~l~lt~kg~~~L~g~~~ 108 (144)
T d2axla1 62 QTESWWKAFSRQLITEGFLVEVS--RYNKFMKICALTKKGRNWLHKANT 108 (144)
T ss_dssp SCHHHHHHHHHHHHHHSSEEEET--TSCTTTCEEEECHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHHHHcCcceeec--ccCcceeeeeECHHHHHHHhcccc
Confidence 67778888899999999998743 444 68999999999987644
No 26
>d1hsja1 a.4.5.28 (A:373-487) Staphylococcal accessory regulator A homolog, SarR {Staphylococcus aureus [TaxId: 1280]}
Probab=66.18 E-value=2.1 Score=28.65 Aligned_cols=44 Identities=18% Similarity=0.237 Sum_probs=37.5
Q ss_pred cCCcHHHHHHHhcccccCccceee---eeceeEEEecchhHHHHHhh
Q psy5978 36 DVPNLQVIKTLQSLKSKGWVNEQF---AWRHYYWYITNDGIEKLRGV 79 (159)
Q Consensus 36 ~vpNL~Vik~mqSLkSrGyVke~F---aWrh~Yw~LTneGI~yLR~y 79 (159)
.+..=.|.++++.|..+|||...- -=|-.+-.||++|.+-+.+.
T Consensus 59 ~~~~~~vs~~i~~Le~~gli~r~~~~~D~R~~~i~LT~~G~~~~~~~ 105 (115)
T d1hsja1 59 EFKPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKANIQKL 105 (115)
T ss_dssp CCCHHHHHHHHHHHHTTTTSCCEECCSSSSCCEEECCSSHHHHHHHH
T ss_pred CCChhhHHHHHHHHHHcCCeEEEeecCCCceEEEEECHHHHHHHHHH
Confidence 478889999999999999998655 35889999999999887653
No 27
>d2hr3a1 a.4.5.28 (A:2-146) Probable transcriptional regulator PA3067 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=65.83 E-value=2.2 Score=28.93 Aligned_cols=44 Identities=16% Similarity=0.203 Sum_probs=35.4
Q ss_pred cCCcHHHHHHHhcccccCccceeeee---ceeEEEecchhHHHHHhh
Q psy5978 36 DVPNLQVIKTLQSLKSKGWVNEQFAW---RHYYWYITNDGIEKLRGV 79 (159)
Q Consensus 36 ~vpNL~Vik~mqSLkSrGyVke~FaW---rh~Yw~LTneGI~yLR~y 79 (159)
.+..-.|.++++.|..+|||..+-+. |-.+-+||++|-+.+.+.
T Consensus 60 ~~~~~~vs~~i~~L~~~glv~r~~~~~DrR~~~i~LT~~G~~~~~~~ 106 (145)
T d2hr3a1 60 RMRSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNLYGN 106 (145)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCeEeeeCccchhHHHhccCHHHHHHHHHH
Confidence 48888899999999999999877665 458899999999887653
No 28
>d2fxaa1 a.4.5.28 (A:6-167) Protease production regulatory protein Hpr {Bacillus subtilis [TaxId: 1423]}
Probab=63.20 E-value=2 Score=30.68 Aligned_cols=52 Identities=17% Similarity=0.207 Sum_probs=39.0
Q ss_pred cCCcHHHHHHHhcccccCccceeeee---ceeEEEecchhHHHHHhhcCCCCCCC
Q psy5978 36 DVPNLQVIKTLQSLKSKGWVNEQFAW---RHYYWYITNDGIEKLRGVLNIPDEIV 87 (159)
Q Consensus 36 ~vpNL~Vik~mqSLkSrGyVke~FaW---rh~Yw~LTneGI~yLR~yLhLP~eiV 87 (159)
.+..=.|.++++.|..+|||..+-+- |-.+-+||++|.+.+.+....-.++.
T Consensus 66 ~l~~~tvs~~i~rL~~~gli~r~~~~~D~R~~~l~lT~~G~~~~~~~~~~~~~~~ 120 (162)
T d2fxaa1 66 VMHVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVFWSLLEEFDPTR 120 (162)
T ss_dssp TCCHHHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHHHHHHHHCCGGG
T ss_pred cCCchhhHHHHHHHHHCCCceeecccccCeeeeeccCHhHHHHHHHHHHHHHHHH
Confidence 37777899999999999999977654 77899999999999876544333333
No 29
>d2dk5a1 a.4.5.85 (A:8-85) DNA-directed RNA polymerase III subunit RPC6, RPO3F {Human (Homo sapiens) [TaxId: 9606]}
Probab=59.16 E-value=1.6 Score=29.00 Aligned_cols=49 Identities=18% Similarity=0.298 Sum_probs=33.5
Q ss_pred HHHHHHhhhcccE-EEeeCCCCCCCCCccCCcHHHHHHHhcccccCccceeeee
Q psy5978 9 YIIYEYLFKEGVL-VAKKDFHAPKHPELDVPNLQVIKTLQSLKSKGWVNEQFAW 61 (159)
Q Consensus 9 ~~IYe~LFkeGV~-VakKD~~~~~Hpel~vpNL~Vik~mqSLkSrGyVke~FaW 61 (159)
..||..++.-|=- ++-+|... ..++|--.|.|+++||.|++++|+.=+=
T Consensus 16 ~lVY~~I~~ag~~GIW~~dir~----ktnL~~~~l~K~LK~Lesk~lIK~VksV 65 (78)
T d2dk5a1 16 KLVYQIIEDAGNKGIWSRDVRY----KSNLPLTEINKILKNLESKKLIKAVKSV 65 (78)
T ss_dssp HHHHHHHHHHCTTCEEHHHHHH----HTTCCHHHHHHHHHHHHHTTSEEEECCS
T ss_pred HHHHHHHHHccccceeHHHHHH----HcCCCHHHHHHHHHHHHhcCCceeeccc
Confidence 3688888843311 23344332 2247778899999999999999997653
No 30
>d1q1ha_ a.4.5.41 (A:) Transcription factor E/IIe-alpha, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=54.24 E-value=2.6 Score=28.62 Aligned_cols=37 Identities=32% Similarity=0.603 Sum_probs=29.3
Q ss_pred CCcHHHHHHHhcccccCcc------ceeeeeceeEEEecchhH
Q psy5978 37 VPNLQVIKTLQSLKSKGWV------NEQFAWRHYYWYITNDGI 73 (159)
Q Consensus 37 vpNL~Vik~mqSLkSrGyV------ke~FaWrh~Yw~LTneGI 73 (159)
+.==.|-++|..|...|+| .+.-+|=-|||.++.+-|
T Consensus 45 i~in~VRk~Ly~L~~~~L~~y~R~kd~~~gw~~Y~W~~~~e~i 87 (88)
T d1q1ha_ 45 IKVNDVRKKLNLLEEQGFVSYRKTRDKDSGWFIYYWKPNIDQI 87 (88)
T ss_dssp SCHHHHHHHHHHHHHHTSCEEEEEC---CCCCEEEEECTHHHH
T ss_pred CcHHHHHHHHHHHHhCCceEEEEeecCCCCcEEEEEEechhcC
Confidence 4445788999999999999 356799999999998765
No 31
>d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]}
Probab=50.30 E-value=0.8 Score=28.50 Aligned_cols=51 Identities=16% Similarity=0.276 Sum_probs=37.9
Q ss_pred cchhhHHHHHHHhhhcccEEEeeCCCCCCCCCccCCcHHHHHHHhcccccCcccee
Q psy5978 3 MPKKNRYIIYEYLFKEGVLVAKKDFHAPKHPELDVPNLQVIKTLQSLKSKGWVNEQ 58 (159)
Q Consensus 3 ipk~~r~~IYe~LFkeGV~VakKD~~~~~Hpel~vpNL~Vik~mqSLkSrGyVke~ 58 (159)
|-+.|+.+|++.|+..|-+- ..|.- ..+.+..--|-..+..|...|+|.|.
T Consensus 3 ir~~N~~~Il~~l~~~g~~s-r~eLa----~~~glS~~Tv~~~l~~L~~~Glv~e~ 53 (71)
T d1z05a1 3 IKQINAGRVYKLIDQKGPIS-RIDLS----KESELAPASITKITRELIDAHLIHET 53 (71)
T ss_dssp HHHHHHHHHHHHHHHHCSBC-HHHHH----HHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHHHcCCcC-HHHHH----HHHCCCHHHHHHHHHHHHHCCCEEEe
Confidence 34678999999999887543 22221 12348888999999999999999874
No 32
>d1oywa1 a.4.5.43 (A:407-516) DNA helicase RecQ DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=50.07 E-value=6.6 Score=26.19 Aligned_cols=49 Identities=18% Similarity=0.152 Sum_probs=39.4
Q ss_pred CCCCCcc-CCcHHHHHHHhcccccCccceeeeeceeEEEecchhHHHHHhh
Q psy5978 30 PKHPELD-VPNLQVIKTLQSLKSKGWVNEQFAWRHYYWYITNDGIEKLRGV 79 (159)
Q Consensus 30 ~~Hpel~-vpNL~Vik~mqSLkSrGyVke~FaWrh~Yw~LTneGI~yLR~y 79 (159)
+.|-..+ .+.-....+++.|...||+++... .+-+-.||++|-++|+..
T Consensus 50 ~~yG~gk~~~~~~w~~li~qLv~~g~L~~~~~-~y~~l~lt~~g~~~l~g~ 99 (110)
T d1oywa1 50 KVYGMGRDKSHEHWVSVIRQLIHLGLVTQNIA-QHSALQLTEAARPVLRGE 99 (110)
T ss_dssp TTTTTTTTSCHHHHHHHHHHHHHTTSEEEEGG-GTTEEEECGGGHHHHHTS
T ss_pred CcccCcCCCCHHHHHHHHHHHHHcCCceeccC-cCCeEEECHHHHHHhCCC
Confidence 3343343 788888999999999999998754 677889999999999964
No 33
>d1ku9a_ a.4.5.36 (A:) DNA-binding protein Mj223 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=46.32 E-value=4.3 Score=27.21 Aligned_cols=38 Identities=18% Similarity=0.334 Sum_probs=33.6
Q ss_pred cCCcHHHHHHHhcccccCccceee---eeceeEEEecchhH
Q psy5978 36 DVPNLQVIKTLQSLKSKGWVNEQF---AWRHYYWYITNDGI 73 (159)
Q Consensus 36 ~vpNL~Vik~mqSLkSrGyVke~F---aWrh~Yw~LTneGI 73 (159)
.|+.-.|-.+++.|..+|+|+.+. .=|.+|-.+|++|.
T Consensus 52 ~vsk~~vs~~l~~L~~~GlV~r~~~~~drr~~~~~~t~~g~ 92 (151)
T d1ku9a_ 52 KISKGNVSMSLKKLEELGFVRKVWIKGERKNYYEAVDGFSS 92 (151)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEECCTTCSSCEEEECCHHHH
T ss_pred CCCcchHHHHHHHHHHCCCEEEEEcCCCCceeEEeCCHHHH
Confidence 489999999999999999998664 56889999999994
No 34
>d1z6ra1 a.4.5.63 (A:12-81) Mlc protein N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=43.55 E-value=1.2 Score=27.87 Aligned_cols=50 Identities=14% Similarity=0.176 Sum_probs=38.0
Q ss_pred chhhHHHHHHHhhhcccEEEeeCCCCCCCCCccCCcHHHHHHHhcccccCcccee
Q psy5978 4 PKKNRYIIYEYLFKEGVLVAKKDFHAPKHPELDVPNLQVIKTLQSLKSKGWVNEQ 58 (159)
Q Consensus 4 pk~~r~~IYe~LFkeGV~VakKD~~~~~Hpel~vpNL~Vik~mqSLkSrGyVke~ 58 (159)
-+.|+..|++.|++.|-+-. .|.- ..+.+..--|-.++..|...|+|.|.
T Consensus 3 r~~N~~~Il~~i~~~g~~sr-~eLa----~~~gLS~~Tvs~iv~~L~~~glv~e~ 52 (70)
T d1z6ra1 3 KQTNAGAVYRLIDQLGPVSR-IDLS----RLAQLAPASITKIVHEMLEAHLVQEL 52 (70)
T ss_dssp HHHHHHHHHHHHHSSCSCCH-HHHH----HHTTCCHHHHHHHHHHHHHHTSEEEC
T ss_pred hHHHHHHHHHHHHHcCCcCH-HHHH----HHHCcCHHHHHHHHHHHHHCCCEEee
Confidence 46799999999998887652 2211 12347888899999999999999873
No 35
>d2d1ha1 a.4.5.50 (A:1-109) Hypothetical transcriptional regulator ST1889 {Sulfolobus tokodaii [TaxId: 111955]}
Probab=42.85 E-value=10 Score=24.47 Aligned_cols=67 Identities=18% Similarity=0.309 Sum_probs=43.5
Q ss_pred hHHHHHHHhhh-cccEEEeeCCCCCCCCCccCCcHHHHHHHhcccccCccceee------eeceeEEEecchhHHHHHh
Q psy5978 7 NRYIIYEYLFK-EGVLVAKKDFHAPKHPELDVPNLQVIKTLQSLKSKGWVNEQF------AWRHYYWYITNDGIEKLRG 78 (159)
Q Consensus 7 ~r~~IYe~LFk-eGV~VakKD~~~~~Hpel~vpNL~Vik~mqSLkSrGyVke~F------aWrh~Yw~LTneGI~yLR~ 78 (159)
....|+..|.+ +|-+-+ +|.. ..+.++.=.|-.+++.|..+|||...= ++..|||.++.++++=+.+
T Consensus 22 ~~~~iL~~L~~~~~~~t~-~eLa----~~~~i~~~tvs~~l~~L~~~GlV~r~~~~~d~rg~~~~~~~~~~~~~~~i~~ 95 (109)
T d2d1ha1 22 TDVAVLLKMVEIEKPITS-EELA----DIFKLSKTTVENSLKKLIELGLVVRTKTEGKKIGRPKYYYSISSNILEKIRN 95 (109)
T ss_dssp HHHHHHHHHHHHCSCEEH-HHHH----HHHTCCHHHHHHHHHHHHHTTSEEEEEC-------CCEEEEECTTHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCH-HHHH----HHHCccHhHHHHHHHHHHHCCCEEEeecCCCCCceeEEEeeCCHHHHHHHHH
Confidence 34567777764 453322 2221 123588889999999999999997543 3456778888888776554
No 36
>d1whza_ d.50.3.2 (A:) Hypothetical protein TTHA1913 {Thermus thermophilus [TaxId: 274]}
Probab=42.43 E-value=7.6 Score=24.38 Aligned_cols=23 Identities=22% Similarity=0.275 Sum_probs=19.0
Q ss_pred CccchhhHHHHHHHhhhcccEEEe
Q psy5978 1 MLMPKKNRYIIYEYLFKEGVLVAK 24 (159)
Q Consensus 1 Mlipk~~r~~IYe~LFkeGV~Vak 24 (159)
|+||++-+ .+.+.|-+.|..+..
T Consensus 1 ~~MP~k~k-elik~L~~~Gf~~~r 23 (70)
T d1whza_ 1 MWMPPRPE-EVARKLRRLGFVERM 23 (70)
T ss_dssp CCCCCCHH-HHHHHHHHTTCEEEE
T ss_pred CCCCCCHH-HHHHHHHHCCcEEec
Confidence 89998776 788999999987654
No 37
>d1p4xa1 a.4.5.28 (A:1-125) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]}
Probab=41.98 E-value=6.9 Score=26.23 Aligned_cols=44 Identities=14% Similarity=0.220 Sum_probs=36.5
Q ss_pred cCCcHHHHHHHhcccccCccceeee---eceeEEEecchhHHHHHhh
Q psy5978 36 DVPNLQVIKTLQSLKSKGWVNEQFA---WRHYYWYITNDGIEKLRGV 79 (159)
Q Consensus 36 ~vpNL~Vik~mqSLkSrGyVke~Fa---Wrh~Yw~LTneGI~yLR~y 79 (159)
.+..=.|..+++.|..+|||.-+=+ =|-.|-+||++|.+++.+-
T Consensus 61 ~~~~~~vs~~l~~L~~~g~v~r~~~~~D~R~~~i~lT~~G~~~~~~~ 107 (125)
T d1p4xa1 61 CYKQSDLVQHIKVLVKHSYISKVRSKIDERNTYISISEEQREKIAER 107 (125)
T ss_dssp SSCGGGTHHHHHHHHHTTSCEEEECSSSTTSEEEECCHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHCCCceeecccCCCCeEEEEECHHHHHHHHHH
Confidence 3677778899999999999976543 4789999999999988764
No 38
>d2p4wa1 a.4.5.64 (A:1-194) Transcriptional regulatory protein PF1790 {Pyrococcus furiosus [TaxId: 2261]}
Probab=37.25 E-value=8 Score=27.65 Aligned_cols=65 Identities=22% Similarity=0.274 Sum_probs=44.4
Q ss_pred cchhhHHHHHHHhhhcccEEEeeCCCCCCCCCccCCcHHHHHHHhcccccCccceee--eec---eeEEEecchhH
Q psy5978 3 MPKKNRYIIYEYLFKEGVLVAKKDFHAPKHPELDVPNLQVIKTLQSLKSKGWVNEQF--AWR---HYYWYITNDGI 73 (159)
Q Consensus 3 ipk~~r~~IYe~LFkeGV~VakKD~~~~~Hpel~vpNL~Vik~mqSLkSrGyVke~F--aWr---h~Yw~LTneGI 73 (159)
+...+|..|...|.+ |=+.+ .+.. ..++|+---|.+.|+.|++-|+|...- .++ -.||.||..+.
T Consensus 12 l~~~~R~~Il~~L~~-~~~~~-~ela----~~l~~s~~~v~~HL~~L~~~Glv~~~~~~~~~G~~~~~y~l~~~~~ 81 (194)
T d2p4wa1 12 LGNETRRRILFLLTK-RPYFV-SELS----RELGVGQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKKGLR 81 (194)
T ss_dssp HHSHHHHHHHHHHHH-SCEEH-HHHH----HHHTCCHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECTTEE
T ss_pred hCCHHHHHHHHHHHh-CCCCH-HHHH----HHHCcCHHHHHHHHHHHHHCCCeEEEEeecCCCCceEEEEecccce
Confidence 345789999998865 44443 2221 134578889999999999999997432 121 45788998774
No 39
>d2fbka1 a.4.5.28 (A:8-179) Transcriptional regulator DR1159 {Deinococcus radiodurans [TaxId: 1299]}
Probab=34.69 E-value=3.7 Score=29.00 Aligned_cols=42 Identities=14% Similarity=0.140 Sum_probs=33.1
Q ss_pred CCcHHHHHHHhcccccCccceeee---eceeEEEecchhHHHHHh
Q psy5978 37 VPNLQVIKTLQSLKSKGWVNEQFA---WRHYYWYITNDGIEKLRG 78 (159)
Q Consensus 37 vpNL~Vik~mqSLkSrGyVke~Fa---Wrh~Yw~LTneGI~yLR~ 78 (159)
+..-.|.++++.|..+|||...-+ =|-.+-.||++|.+-+.+
T Consensus 91 i~~~tvsr~l~~Le~~GlV~r~~~~~DrR~~~i~LT~~G~~l~~~ 135 (172)
T d2fbka1 91 ISGPSTSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRALVTH 135 (172)
T ss_dssp CCSGGGSSHHHHHHHHTSEECCC-------CCBEECHHHHHHHHH
T ss_pred cCHhHHHHHHHHHHhCCCeeeeccccchhhHHhhcCHHHHHHHHH
Confidence 666677888999999999998765 367889999999988775
No 40
>d3bz6a1 a.4.5.75 (A:13-96) Hypothetical protein PSPTO2686 {Pseudomonas syringae pv. tomato [TaxId: 323]}
Probab=34.07 E-value=8.2 Score=26.01 Aligned_cols=33 Identities=21% Similarity=0.378 Sum_probs=28.3
Q ss_pred CCCCCccCCcHHHHHHHhcccccCccceeeeec
Q psy5978 30 PKHPELDVPNLQVIKTLQSLKSKGWVNEQFAWR 62 (159)
Q Consensus 30 ~~Hpel~vpNL~Vik~mqSLkSrGyVke~FaWr 62 (159)
..+|-+++..-.|..++.+|+.+++|.++|+=|
T Consensus 45 nR~PVm~l~E~eV~~ald~L~~~~Lv~~~~gsR 77 (84)
T d3bz6a1 45 SRDPVMNLTQGQVGQSLRALEGRGLTRLVMGSR 77 (84)
T ss_dssp SCSSCCCCCHHHHHHHHHHHHHTTSEEEECCSS
T ss_pred ccCccccCCHHHHHHHHHHHHHCCCeEeeccCC
Confidence 356777888899999999999999999998644
No 41
>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.47 E-value=7.2 Score=30.21 Aligned_cols=72 Identities=15% Similarity=0.208 Sum_probs=43.1
Q ss_pred HHHHHHHhhhcccEEEeeCCCCCCCCCccCCcHHHHHHHhcccccCccceeeeec--eeEEEecchhHHHHHhhc
Q psy5978 8 RYIIYEYLFKEGVLVAKKDFHAPKHPELDVPNLQVIKTLQSLKSKGWVNEQFAWR--HYYWYITNDGIEKLRGVL 80 (159)
Q Consensus 8 r~~IYe~LFkeGV~VakKD~~~~~Hpel~vpNL~Vik~mqSLkSrGyVke~FaWr--h~Yw~LTneGI~yLR~yL 80 (159)
-..|++.|=.-|.||+-+++.... -.+...|+.-+..+...+...+.....+|- -..|||+...-..|++||
T Consensus 249 l~e~~r~LKpGg~iv~~~~~~~~~-~~~~~~~l~~~~~~~~v~~~~~~~~~vsWt~~~~~yyi~~id~~~~~~~~ 322 (328)
T d1nw3a_ 249 LKERFANMKEGGRIVSSKPFAPLN-FRINSRNLSDIGTIMRVVELSPLKGSVSWTGKPVSYYLHTIDRTILENYF 322 (328)
T ss_dssp HHHHHTTCCTTCEEEESSCSSCTT-CCCCTTCTTSGGGGEEEEECCCCSSCBCTTSSBCCCEEEEECTHHHHHHH
T ss_pred HHHHHHhCCCCcEEEEecccCCCC-cccchhhcccchhhhhhhhcchhcccccccCCCeeEEEEEeeHHHHHHHH
Confidence 345665554556777767664222 123345555455555556666777777883 355667777778888876
No 42
>d2f2ea1 a.4.5.69 (A:5-146) Hypothetical protein PA1607 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=27.77 E-value=13 Score=26.16 Aligned_cols=42 Identities=17% Similarity=0.184 Sum_probs=32.8
Q ss_pred ccCCcHHHHHHHhcccccCccceee--eeceeEEEecchhHHHH
Q psy5978 35 LDVPNLQVIKTLQSLKSKGWVNEQF--AWRHYYWYITNDGIEKL 76 (159)
Q Consensus 35 l~vpNL~Vik~mqSLkSrGyVke~F--aWrh~Yw~LTneGI~yL 76 (159)
+.|+.=-+..-|+.|...|+|..++ .-.++=|.||+.|.+.+
T Consensus 43 lgis~~vLs~rL~~L~~~gLv~r~~~~~p~r~~Y~LT~~G~~L~ 86 (142)
T d2f2ea1 43 LGLAKNILAARLRNLVEHGVMVAVPAESGSHQEYRLTDKGRALF 86 (142)
T ss_dssp HCCCHHHHHHHHHHHHHTTSEEEEECSSSSCEEEEECHHHHTTH
T ss_pred hhccHHHHHHHHHHHHHhcceeeecCCCCCeeEEecCcCcchHH
Confidence 4566555888999999999998865 44567799999997654
No 43
>d1xpja_ c.108.1.18 (A:) Hypothetical protein VC0232 {Vibrio cholerae [TaxId: 666]}
Probab=26.14 E-value=8.5 Score=26.69 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.0
Q ss_pred cCCcHHHHHHHhcccccCccce
Q psy5978 36 DVPNLQVIKTLQSLKSKGWVNE 57 (159)
Q Consensus 36 ~vpNL~Vik~mqSLkSrGyVke 57 (159)
..|+..+|..|+.|++.|+---
T Consensus 23 ~~P~~~~Ie~l~~l~~~G~~Ii 44 (124)
T d1xpja_ 23 VLPRLDVIEQLREYHQLGFEIV 44 (124)
T ss_dssp CCBCHHHHHHHHHHHHTTCEEE
T ss_pred cCcCHHHHHHHHHHHHCCCEEE
Confidence 3899999999999999987443
No 44
>d2fswa1 a.4.5.69 (A:3-104) Hypothetical protein PG0823 {Porphyromonas gingivalis [TaxId: 837]}
Probab=25.42 E-value=19 Score=23.77 Aligned_cols=40 Identities=20% Similarity=0.219 Sum_probs=30.4
Q ss_pred CCcHHHHHHHhcccccCccceee-e--eceeEEEecchhHHHH
Q psy5978 37 VPNLQVIKTLQSLKSKGWVNEQF-A--WRHYYWYITNDGIEKL 76 (159)
Q Consensus 37 vpNL~Vik~mqSLkSrGyVke~F-a--Wrh~Yw~LTneGI~yL 76 (159)
|+.=-..+-++.|...|+|..+- . =.+..|.||+.|.+.+
T Consensus 46 Is~~~Ls~rLkeL~~~glv~r~~~~~~p~~veY~LT~~G~~L~ 88 (102)
T d2fswa1 46 ISEKMLIDELKFLCGKGLIKKKQYPEVPPRVEYSLTPLGEKVL 88 (102)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHTTH
T ss_pred cchhHHHHHHHHHHHCCceeecccCCCCCeehhhhhHhHHHHH
Confidence 56666788899999999997542 2 1367899999998653
No 45
>d1ylfa1 a.4.5.55 (A:5-142) Hypothetical protein BC1842 {Bacillus cereus [TaxId: 1396]}
Probab=25.42 E-value=9.6 Score=25.78 Aligned_cols=32 Identities=16% Similarity=0.100 Sum_probs=25.5
Q ss_pred cCCcHHHHHHHhcccccCccceeeeeceeEEEec
Q psy5978 36 DVPNLQVIKTLQSLKSKGWVNEQFAWRHYYWYIT 69 (159)
Q Consensus 36 ~vpNL~Vik~mqSLkSrGyVke~FaWrh~Yw~LT 69 (159)
++|--++.|+|+.|+..|+|+.+=+ +--|| |.
T Consensus 34 ~i~~~~l~kil~~L~~aGlv~S~rG-~GG~~-L~ 65 (138)
T d1ylfa1 34 NTNPVVIRKIMSYLKQAGFVYVNRG-PGGAG-LL 65 (138)
T ss_dssp TSCHHHHHHHHHHHHHTTSEEEC----CCEE-ES
T ss_pred CcCHHHHHHHHHHHHHCCCeEeecC-CCCce-ec
Confidence 5999999999999999999999878 66665 65
No 46
>d1xd7a_ a.4.5.55 (A:) Hypothetical protein ywnA {Bacillus subtilis [TaxId: 1423]}
Probab=25.40 E-value=8.8 Score=25.68 Aligned_cols=33 Identities=9% Similarity=0.035 Sum_probs=27.1
Q ss_pred cCCcHHHHHHHhcccccCccceeeeeceeEEEecc
Q psy5978 36 DVPNLQVIKTLQSLKSKGWVNEQFAWRHYYWYITN 70 (159)
Q Consensus 36 ~vpNL~Vik~mqSLkSrGyVke~FaWrh~Yw~LTn 70 (159)
++|.-+|-|+|+.|+..|+|+.+=+ ..-|| |+.
T Consensus 29 ~~~~~~v~kIl~~L~~aglV~s~rG-~~GGy-Lar 61 (127)
T d1xd7a_ 29 NTNPVVVRRMISLLKKADILTSRAG-VPGAS-LKK 61 (127)
T ss_dssp TSCHHHHHHHHHHHHHTTSEECCSS-SSSCE-ESS
T ss_pred CcCHHHHHHHHHHHHHhCcccccCC-CCCcc-ccC
Confidence 4888899999999999999998777 55554 754
No 47
>d1tf5a1 a.162.1.1 (A:227-348) Pre-protein crosslinking domain of SecA {Bacillus subtilis [TaxId: 1423]}
Probab=23.48 E-value=15 Score=25.27 Aligned_cols=37 Identities=19% Similarity=0.355 Sum_probs=25.9
Q ss_pred HHHHHHhccccc-Ccc---ceeeeeceeEEEecchhHHHHHhhcCCC
Q psy5978 41 QVIKTLQSLKSK-GWV---NEQFAWRHYYWYITNDGIEKLRGVLNIP 83 (159)
Q Consensus 41 ~Vik~mqSLkSr-GyV---ke~FaWrh~Yw~LTneGI~yLR~yLhLP 83 (159)
.+.+++++|+.- -|. |..-. .||++||+.+.+.|...
T Consensus 10 ~a~~lv~~L~~~~DY~iDek~rsV------~LTe~G~~~vE~~l~~~ 50 (122)
T d1tf5a1 10 QANAFVRTLKAEKDYTYDIKTKAV------QLTEEGMTKAEKAFGID 50 (122)
T ss_dssp HHHHHHTTCCSSSSBCCCSSSCCC------CBCHHHHHHHHHHTTCS
T ss_pred HHHHHHHhCCCCCCEEEecCccEe------eeeccHHHHHHHhcCcc
Confidence 356778888764 343 22222 79999999999999874
No 48
>d1stza1 a.4.5.51 (A:14-100) Heat-inducible transcription repressor HrcA, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=23.42 E-value=8.6 Score=25.29 Aligned_cols=66 Identities=11% Similarity=0.183 Sum_probs=45.8
Q ss_pred HHHHHHhhhcccEEEeeCCCCCCCCCccCCcHHHHHHHhcccccCccceeeeeceeEEEecchhHHHHHh
Q psy5978 9 YIIYEYLFKEGVLVAKKDFHAPKHPELDVPNLQVIKTLQSLKSKGWVNEQFAWRHYYWYITNDGIEKLRG 78 (159)
Q Consensus 9 ~~IYe~LFkeGV~VakKD~~~~~Hpel~vpNL~Vik~mqSLkSrGyVke~FaWrh~Yw~LTneGI~yLR~ 78 (159)
++|-+...+.|.-|.-++.. .+-.+++.-=-|-..|+.|...||++....=+- -..|++|.+|--+
T Consensus 11 ~~Ive~y~~~g~Pv~s~~i~--~~~~l~~S~aTIRn~m~~LE~~G~l~~~h~s~G--riPT~~g~r~yv~ 76 (87)
T d1stza1 11 YCIVREYIENKKPVSSQRVL--EVSNIEFSSATIRNDMKKLEYLGYIYQPHTSAG--RIPTDKGLRFYYE 76 (87)
T ss_dssp HHHHHHHHHHCSCBCHHHHH--HHSCCCSCHHHHHHHHHHHHHTTSEECCSSCSC--BEECHHHHHHHHH
T ss_pred HHHHHHHHHcCCccCHHHHH--HHhCCCCCHHHHHHHHHHHHHCCcccCCCCCCC--CcccHHHHHHHHH
Confidence 45666666778777666542 334566777788899999999999987544333 4789999876443
No 49
>d2f5ga1 d.58.57.1 (A:2-131) Putative transposase SSO1474 {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=23.10 E-value=15 Score=25.26 Aligned_cols=54 Identities=19% Similarity=0.300 Sum_probs=33.0
Q ss_pred cccEEEeeCCCCCCCCCc--c-CCcHHHHHHHhccc---cc------CccceeeeeceeEEEecchh
Q psy5978 18 EGVLVAKKDFHAPKHPEL--D-VPNLQVIKTLQSLK---SK------GWVNEQFAWRHYYWYITNDG 72 (159)
Q Consensus 18 eGV~VakKD~~~~~Hpel--~-vpNL~Vik~mqSLk---Sr------GyVke~FaWrh~Yw~LTneG 72 (159)
-|+.+..-.. ++.|=.| + -|++.+-++|+.|| |+ +.+++.+.|+--|+..|--+
T Consensus 46 ~~~~i~~~~~-~~DHVHllv~~~p~~sis~~v~~lKg~SSr~i~~~f~~l~~~~~W~~gY~~~tvg~ 111 (130)
T d2f5ga1 46 LGCEIIALEV-MPDHIHLFVNCPPRYAPSYLANYFKGKSARLILKKFPQLNKGKLWTRSYFVATAGN 111 (130)
T ss_dssp HTCEEEEEEE-ETTEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHHCGGGCSSCSBCSCEEEEEEBC
T ss_pred cCCccceecc-CCCcceeeEecCCccCHHHHhhhhcchhHHHHHHHCccccCCCcccCCeEEEecCC
Confidence 4777665554 3455333 3 46665555555554 43 34455777999999988754
No 50
>d1nkta1 a.162.1.1 (A:226-349) Pre-protein crosslinking domain of SecA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=22.73 E-value=19 Score=24.88 Aligned_cols=36 Identities=11% Similarity=0.182 Sum_probs=25.0
Q ss_pred HHHHHHhccccc-Cccc---eeeeeceeEEEecchhHHHHHhhcCC
Q psy5978 41 QVIKTLQSLKSK-GWVN---EQFAWRHYYWYITNDGIEKLRGVLNI 82 (159)
Q Consensus 41 ~Vik~mqSLkSr-GyVk---e~FaWrh~Yw~LTneGI~yLR~yLhL 82 (159)
.+.+++++|+.. -|.- ..- =.||++||+.+.+.|..
T Consensus 12 ~~~~l~~~L~~d~dY~iDek~k~------V~LTe~Gi~~iE~~l~~ 51 (124)
T d1nkta1 12 EFARLAPLMEKDVHYEVDLRKRT------VGVHEKGVEFVEDQLGI 51 (124)
T ss_dssp HHHHHHHHSCBTTTEEEETTTTE------EEECHHHHHHHHHHHTC
T ss_pred HHHHHHHhcCCCCCEEEEcCCCE------EEeeHHHHHHHHhhccc
Confidence 356778888764 3431 112 27999999999999875
No 51
>d2es9a1 a.247.1.1 (A:11-107) Hypothetical protein YoaC {Salmonella typhimurium [TaxId: 90371]}
Probab=22.62 E-value=17 Score=24.75 Aligned_cols=15 Identities=40% Similarity=0.651 Sum_probs=11.6
Q ss_pred cchhH-HHHHhhcCCCC
Q psy5978 69 TNDGI-EKLRGVLNIPD 84 (159)
Q Consensus 69 TneGI-~yLR~yLhLP~ 84 (159)
|.+|| .||.+ |+.|+
T Consensus 27 TAKGifKyLke-lGVPa 42 (97)
T d2es9a1 27 TAKGILKYLHD-LGVPV 42 (97)
T ss_dssp HHHHHHHHHHH-TTCCC
T ss_pred HHHHHHHHHHH-cCCCC
Confidence 67899 89987 87763
No 52
>d2g9wa1 a.4.5.39 (A:3-124) Hypothetical protein Rv1846c {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=21.76 E-value=15 Score=24.49 Aligned_cols=60 Identities=18% Similarity=0.195 Sum_probs=34.9
Q ss_pred HHHHHHhhhcc-cEEEeeCCCCCCCCCccCCcHHHHHHHhcccccCcccee-eeeceeEEEec
Q psy5978 9 YIIYEYLFKEG-VLVAKKDFHAPKHPELDVPNLQVIKTLQSLKSKGWVNEQ-FAWRHYYWYIT 69 (159)
Q Consensus 9 ~~IYe~LFkeG-V~VakKD~~~~~Hpel~vpNL~Vik~mqSLkSrGyVke~-FaWrh~Yw~LT 69 (159)
..|.+.|.+.| .+-+ +|++--...+-+..-=-|...|..|..||||+-. .+=.|+|+.+-
T Consensus 10 ~~IM~~lW~~g~~~t~-~eI~~~l~~~~~~~~sTV~T~L~rL~~Kg~l~~~~~gr~~~Y~~~i 71 (122)
T d2g9wa1 10 RAVMDHLWSRTEPQTV-RQVHEALSARRDLAYTTVMAVLQRLAKKNLVLQIRDDRAHRYAPVH 71 (122)
T ss_dssp HHHHHHHHTCSSCEEH-HHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEEC---CCEEEESS
T ss_pred HHHHHHHHcCCCCccH-HHHHHHHhccCCCcHHHHHHHHHHHHHCCCEEEeecCCeEEEEeCC
Confidence 37888888865 4433 5543211111123334799999999999999655 44445555543
No 53
>d1yyva1 a.4.5.69 (A:9-122) Putative transcriptional regulator YtfH {Salmonella typhimurium [TaxId: 90371]}
Probab=21.47 E-value=29 Score=23.27 Aligned_cols=40 Identities=23% Similarity=0.270 Sum_probs=30.9
Q ss_pred CCcHHHHHHHhcccccCccceee-e--eceeEEEecchhHHHH
Q psy5978 37 VPNLQVIKTLQSLKSKGWVNEQF-A--WRHYYWYITNDGIEKL 76 (159)
Q Consensus 37 vpNL~Vik~mqSLkSrGyVke~F-a--Wrh~Yw~LTneGI~yL 76 (159)
|+.=-+.+.|+.|...|+|..+- + =.+..|.||+.|.+.+
T Consensus 50 is~~~Ls~rL~~Le~~glv~R~~~~~~p~~veY~LT~~G~~L~ 92 (114)
T d1yyva1 50 VSEKMLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPLGEQVS 92 (114)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEEEECSSSCEEEEEECHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHhhcccCCCCchhHhHhhHhHHHHH
Confidence 56666788999999999997553 2 2467889999998764
No 54
>d1unqa_ b.55.1.1 (A:) Rac-alpha serine/threonine kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.43 E-value=15 Score=22.67 Aligned_cols=14 Identities=43% Similarity=1.080 Sum_probs=12.7
Q ss_pred eeceeEEEecchhH
Q psy5978 60 AWRHYYWYITNDGI 73 (159)
Q Consensus 60 aWrh~Yw~LTneGI 73 (159)
+|+-.|+.|++.|+
T Consensus 22 ~Wk~RwfvL~~~~~ 35 (118)
T d1unqa_ 22 TWRPRYFLLKNDGT 35 (118)
T ss_dssp CEEEEEEEEETTSE
T ss_pred CcEEEEEEEeccce
Confidence 69999999999985
No 55
>d1u0sa_ d.58.24.1 (A:) CheY-binding domain of CheA {Thermotoga maritima [TaxId: 2336]}
Probab=20.75 E-value=30 Score=22.32 Aligned_cols=50 Identities=22% Similarity=0.273 Sum_probs=40.1
Q ss_pred CCcHHHHHHHhcccc-cCcc-----------ceeeeeceeEEEecchhHHHHHhhcCCCCCC
Q psy5978 37 VPNLQVIKTLQSLKS-KGWV-----------NEQFAWRHYYWYITNDGIEKLRGVLNIPDEI 86 (159)
Q Consensus 37 vpNL~Vik~mqSLkS-rGyV-----------ke~FaWrh~Yw~LTneGI~yLR~yLhLP~ei 86 (159)
+++......+|+|+. .|-| .|+|.=-.-+.++|+++++=|++-+.--+||
T Consensus 17 lK~vRa~mV~~~Le~~~GeIiks~P~~e~ie~e~fd~~f~v~~~t~~~~e~i~~~i~~isEV 78 (86)
T d1u0sa_ 17 LKSARIYLVFHKLEELKCEVVRTIPSVEEIEEEKFENEVELFVISPVDLEKLSEALSSIADI 78 (86)
T ss_dssp SHHHHHHHHHHHHHHTTCEEEEEESCHHHHHTTCSSSEEEEEEEESSCHHHHHHHHHTSSSC
T ss_pred cHHHHHHHHHHHHHhcCCEEEEECCCHHHHhCCCCceEEEEEEEeCCCHHHHHHHHhCcCce
Confidence 677888888888887 4654 5678777788999999999999987666666
Done!