RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5978
         (159 letters)



>d1p4xa1 a.4.5.28 (A:1-125) Staphylococcal accessory regulator A
           homolog, SarS {Staphylococcus aureus [TaxId: 1280]}
          Length = 125

 Score = 26.6 bits (58), Expect = 0.88
 Identities = 8/49 (16%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 42  VIKTLQSLKSKGWVNEQFAW---RHYYWYITNDGIEKLRGVLNIPDEIV 87
           +++ ++ L    ++++  +    R+ Y  I+ +  EK+   + + D+I+
Sbjct: 67  LVQHIKVLVKHSYISKVRSKIDERNTYISISEEQREKIAERVTLFDQII 115


>d1xpja_ c.108.1.18 (A:) Hypothetical protein VC0232 {Vibrio
          cholerae [TaxId: 666]}
          Length = 124

 Score = 25.2 bits (55), Expect = 2.8
 Identities = 6/29 (20%), Positives = 10/29 (34%)

Query: 27 FHAPKHPELDVPNLQVIKTLQSLKSKGWV 55
                    +P L VI+ L+     G+ 
Sbjct: 14 QANTSDYRNVLPRLDVIEQLREYHQLGFE 42


>d1q1ha_ a.4.5.41 (A:) Transcription factor E/IIe-alpha,
          N-terminal domain {Archaeon Sulfolobus solfataricus
          [TaxId: 2287]}
          Length = 88

 Score = 23.9 bits (52), Expect = 5.6
 Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 6/39 (15%)

Query: 41 QVIKTLQSLKSKGWV------NEQFAWRHYYWYITNDGI 73
           V K L  L+ +G+V      ++   W  YYW    D I
Sbjct: 49 DVRKKLNLLEEQGFVSYRKTRDKDSGWFIYYWKPNIDQI 87


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.137    0.419 

Gapped
Lambda     K      H
   0.267   0.0643    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 625,309
Number of extensions: 27677
Number of successful extensions: 72
Number of sequences better than 10.0: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 8
Length of query: 159
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 81
Effective length of database: 1,336,656
Effective search space: 108269136
Effective search space used: 108269136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (22.8 bits)