BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5979
(499 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1LXT|A Chain A, Structure Of Phosphotransferase Phosphoglucomutase From
Rabbit
pdb|1LXT|B Chain B, Structure Of Phosphotransferase Phosphoglucomutase From
Rabbit
pdb|1C47|A Chain A, Binding Driven Structural Changes In Crystaline
Phosphoglucomutase Associated With Chemical Reaction
pdb|1C47|B Chain B, Binding Driven Structural Changes In Crystaline
Phosphoglucomutase Associated With Chemical Reaction
pdb|1C4G|A Chain A, Phosphoglucomutase Vanadate Based Transition State Analog
Complex
pdb|1C4G|B Chain B, Phosphoglucomutase Vanadate Based Transition State Analog
Complex
Length = 561
Score = 508 bits (1308), Expect = e-144, Method: Compositional matrix adjust.
Identities = 246/460 (53%), Positives = 319/460 (69%), Gaps = 31/460 (6%)
Query: 2 HYTENFIQSILTALGDKLKGSVLVVGGDGRYFGDVAVDKIIKISGIRSVLVVGGDGRYFG 61
+Y ENFIQSI++ + + + LVVGGDGR++
Sbjct: 33 NYAENFIQSIISTVEPAQRQ--------------------------EATLVVGGDGRFYM 66
Query: 62 DVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQVTGGIVLTASHNPGGPDNDF 121
A+ I++I+AANG+ +L++GQNGILSTPAVS +IRK + GGI+LTASHNPGGP+ DF
Sbjct: 67 KEAIQLIVRIAAANGIGRLVIGQNGILSTPAVSCIIRKIKAIGGIILTASHNPGGPNGDF 126
Query: 122 GIKFNTSNGGPAPDAVTENIYKITTQIKTYSIVPDLKVDITSIGSSSYEVDGA--QFQVD 179
GIKFN SNGGPAP+A+T+ I++I+ I+ Y+I PDLKVD+ +G ++++ F V+
Sbjct: 127 GIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDLKVDLGVLGKQQFDLENKFKPFTVE 186
Query: 180 VIDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINAMHGVTGPYVKKIFLEELGAQ 239
++DSVE Y +++ IFDF L+ L+ SG K+ I+AMHGV GPYVKKI EELGA
Sbjct: 187 IVDSVEAYATMLRNIFDFNALKELL---SGPNRLKIRIDAMHGVVGPYVKKILCEELGAP 243
Query: 240 PDNAVNTTPLPDFGGHHPDPNLTYAADLVQAMQXXXXXXXXXXXXXXXRNMVLGKKAFFV 299
++AVN PL DFGGHHPDPNLTYAADLV+ M+ RNM+LGK FFV
Sbjct: 244 ANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKSGEHDFGAAFDGDGDRNMILGKHGFFV 303
Query: 300 NPSDSLAVLAAHLDSIPYFKKTGVKGYARSMPTGAAVDRVAKANNKELFEVPTGWKYFGN 359
NPSDS+AV+AA++ SIPYF++TGV+G+ARSMPT A+DRVA A L+E PTGWK+FGN
Sbjct: 304 NPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWKFFGN 363
Query: 360 LMDAGRLSLCGEESFGTGSDHIREKDGIWAVLAWLSVVEHTGKPVEEILKSHWKQYGRNY 419
LMDA +LSLCGEESFGTGSDHIREKDG+WAVLAWLS++ + VE+ILK HW ++GRN+
Sbjct: 364 LMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILATRKQSVEDILKDHWHKFGRNF 423
Query: 420 FTRYDYENCSAAPCNQMMDELEKKVSAPEFKGVTLSAEGR 459
FTRYDYE A +MM +LE + F G SA +
Sbjct: 424 FTRYDYEEVEAEGATKMMKDLEALMFDRSFVGKQFSANDK 463
>pdb|1JDY|A Chain A, Rabbit Muscle Phosphoglucomutase
pdb|1JDY|B Chain B, Rabbit Muscle Phosphoglucomutase
pdb|1VKL|A Chain A, Rabbit Muscle Phosphoglucomutase
pdb|1VKL|B Chain B, Rabbit Muscle Phosphoglucomutase
pdb|3PMG|A Chain A, Structure Of Rabbit Muscle Phosphoglucomutase At 2.4
Angstroms Resolution. Use Of Freezing Point Depressant
And Reduced Temperature To Enhance Diffractivity
pdb|3PMG|B Chain B, Structure Of Rabbit Muscle Phosphoglucomutase At 2.4
Angstroms Resolution. Use Of Freezing Point Depressant
And Reduced Temperature To Enhance Diffractivity
Length = 561
Score = 506 bits (1303), Expect = e-143, Method: Compositional matrix adjust.
Identities = 245/460 (53%), Positives = 318/460 (69%), Gaps = 31/460 (6%)
Query: 2 HYTENFIQSILTALGDKLKGSVLVVGGDGRYFGDVAVDKIIKISGIRSVLVVGGDGRYFG 61
+Y ENFIQSI++ + + + LVVGGDGR++
Sbjct: 33 NYAENFIQSIISTVEPAQRQ--------------------------EATLVVGGDGRFYM 66
Query: 62 DVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQVTGGIVLTASHNPGGPDNDF 121
A+ I++I+AANG+ +L++GQNGILSTPAVS +IRK + GGI+LTA HNPGGP+ DF
Sbjct: 67 KEAIQLIVRIAAANGIGRLVIGQNGILSTPAVSCIIRKIKAIGGIILTAXHNPGGPNGDF 126
Query: 122 GIKFNTSNGGPAPDAVTENIYKITTQIKTYSIVPDLKVDITSIGSSSYEVDGA--QFQVD 179
GIKFN SNGGPAP+A+T+ I++I+ I+ Y+I PDLKVD+ +G ++++ F V+
Sbjct: 127 GIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDLKVDLGVLGKQQFDLENKFKPFTVE 186
Query: 180 VIDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINAMHGVTGPYVKKIFLEELGAQ 239
++DSVE Y +++ IFDF L+ L+ SG K+ I+AMHGV GPYVKKI EELGA
Sbjct: 187 IVDSVEAYATMLRNIFDFNALKELL---SGPNRLKIRIDAMHGVVGPYVKKILCEELGAP 243
Query: 240 PDNAVNTTPLPDFGGHHPDPNLTYAADLVQAMQXXXXXXXXXXXXXXXRNMVLGKKAFFV 299
++AVN PL DFGGHHPDPNLTYAADLV+ M+ RNM+LGK FFV
Sbjct: 244 ANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKSGEHDFGAAFDGDGDRNMILGKHGFFV 303
Query: 300 NPSDSLAVLAAHLDSIPYFKKTGVKGYARSMPTGAAVDRVAKANNKELFEVPTGWKYFGN 359
NPSDS+AV+AA++ SIPYF++TGV+G+ARSMPT A+DRVA A L+E PTGWK+FGN
Sbjct: 304 NPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWKFFGN 363
Query: 360 LMDAGRLSLCGEESFGTGSDHIREKDGIWAVLAWLSVVEHTGKPVEEILKSHWKQYGRNY 419
LMDA +LSLCGEESFGTGSDHIREKDG+WAVLAWLS++ + VE+ILK HW ++GRN+
Sbjct: 364 LMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILATRKQSVEDILKDHWHKFGRNF 423
Query: 420 FTRYDYENCSAAPCNQMMDELEKKVSAPEFKGVTLSAEGR 459
FTRYDYE A +MM +LE + F G SA +
Sbjct: 424 FTRYDYEEVEAEGATKMMKDLEALMFDRSFVGKQFSANDK 463
>pdb|1KFI|A Chain A, Crystal Structure Of The Exocytosis-Sensitive
Phosphoprotein, Pp63PARAFUSIN (PHOSPHOGLUCOMUTASE) FROM
Paramecium
pdb|1KFI|B Chain B, Crystal Structure Of The Exocytosis-Sensitive
Phosphoprotein, Pp63PARAFUSIN (PHOSPHOGLUCOMUTASE) FROM
Paramecium
pdb|1KFQ|A Chain A, Crystal Structure Of Exocytosis-Sensitive Phosphoprotein,
Pp63PARAFUSIN (PHOSPHOGLUCOMUTSE) FROM PARAMECIUM. OPEN
Form
pdb|1KFQ|B Chain B, Crystal Structure Of Exocytosis-Sensitive Phosphoprotein,
Pp63PARAFUSIN (PHOSPHOGLUCOMUTSE) FROM PARAMECIUM. OPEN
Form
Length = 572
Score = 390 bits (1001), Expect = e-108, Method: Compositional matrix adjust.
Identities = 217/473 (45%), Positives = 287/473 (60%), Gaps = 60/473 (12%)
Query: 2 HYTENFIQSILTAL-GDKLKGSVLVVGGDGRYFGDVAVDKIIKISGIRSVLVVGGDGRYF 60
+Y ENF+QSI L D+LK ++VL VGGDGRYF
Sbjct: 37 NYLENFVQSIFNTLRKDELKP--------------------------KNVLFVGGDGRYF 70
Query: 61 GDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRK-----HQVTGGIVLTASHNPG 115
A+ II+++ AN ++++ VGQ G++STPA S IRK GGI+LTASHNPG
Sbjct: 71 NRQAIFSIIRLAYANDISEVHVGQAGLMSTPASSHYIRKVNEEVGNCIGGIILTASHNPG 130
Query: 116 GPDN-DFGIKFNTSNGGPAPDAVTENIYKITTQIKTYSIVP---DLKVDITSIGSSSYE- 170
G ++ DFGIKFN G PAP+ T+ IY TT+IK Y V + +++ IG +E
Sbjct: 131 GKEHGDFGIKFNVRTGAPAPEDFTDQIYTHTTKIKEYLTVDYEFEKHINLDQIGVYKFEG 190
Query: 171 --VDGAQFQVDVIDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINAMHGVTGPYV 228
++ + F+V V+D+V+ Y QLM+++FDF L+KG F + MHGV GPY
Sbjct: 191 TRLEKSHFEVKVVDTVQDYTQLMQKLFDF----DLLKGLFSNKDFSFRFDGMHGVAGPYA 246
Query: 229 KKIFLEELGAQPDNAVNTTPLPDFGGHHPDPNLTYAADLVQAMQXXXXXXX-------XX 281
K IF LG ++ +N P DFGG HPDPNLTYA DLV+ +
Sbjct: 247 KHIFGTLLGCSKESLLNCDPSEDFGGGHPDPNLTYAHDLVELLDIHKKKDVGTVPQFGAA 306
Query: 282 XXXXXXRNMVLGKKAFFVNPSDSLAVLAAHLDSIPYFKKTGVKGYARSMPTGAAVDRVAK 341
RNM+LG++ FFV PSDSLAV+AA+ + I K G+ G ARSMPT A+D+VA
Sbjct: 307 CDGDADRNMILGRQ-FFVTPSDSLAVIAANANLI---FKNGLLGAARSMPTSGALDKVAA 362
Query: 342 ANNKELFEVPTGWKYFGNLMDAGRLSLCGEESFGTGSDHIREKDGIWAVLAWLSVVEHTG 401
N +LFE PTGWK+FGNLMDAG ++LCGEESFGTGS+HIREKDGIWAVLAWL+++ H
Sbjct: 363 KNGIKLFETPTGWKFFGNLMDAGLINLCGEESFGTGSNHIREKDGIWAVLAWLTILAHKN 422
Query: 402 K------PVEEILKSHWKQYGRNYFTRYDYENCSAAPCNQMMDELEKKVSAPE 448
K VEEI+ +W+Q+GRNY++RYDYE +A N+MM+ L+ K E
Sbjct: 423 KNTDHFVTVEEIVTQYWQQFGRNYYSRYDYEQVDSAGANKMMEHLKTKFQYFE 475
>pdb|3NA5|A Chain A, Crystal Structure Of A Bacterial Phosphoglucomutase, An
Enzyme Important In The Virulence Of Several Human
Pathogens.
pdb|3NA5|B Chain B, Crystal Structure Of A Bacterial Phosphoglucomutase, An
Enzyme Important In The Virulence Of Several Human
Pathogens
Length = 570
Score = 88.6 bits (218), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 113/432 (26%), Positives = 177/432 (40%), Gaps = 46/432 (10%)
Query: 45 SGIRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQVTG 104
+GI VG D + A ++++ AANGV ++ NG TPAVS I H G
Sbjct: 99 NGITGPCYVGKDTHALSEPAFISVLEVLAANGVDVIVQENNGFTPTPAVSNAILVHNKKG 158
Query: 105 -----GIVLTASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITTQIKTYSIVPDLKV 159
GIV+T SHNP P+ D GIK+N NGGPA VT+ + + L
Sbjct: 159 GPLADGIVITPSHNP--PE-DGGIKYNPPNGGPADTNVTKVVEDRANAL--------LAG 207
Query: 160 DITSIGSSSYEVDGAQFQVDVIDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINA 219
+ + S + A V +D V+ +++ + +I D +Q + L ++
Sbjct: 208 GLQGVKRISLDAAMASGHVKAVDLVQPFVEGLADIVDMAAIQ--------KAGLTLGVDP 259
Query: 220 MHGVTGPYVKKIF------LEELGAQPDNAVNTTPLPDFGGHHPDPNLTYAADLVQAMQX 273
+ G Y K+I L + Q D L G D + A + A++
Sbjct: 260 LGGSGIEYWKRIAEHYKLNLTLVNDQVDQTFRFMHLDKDGAIRMDCSSEXAMAGLLALRD 319
Query: 274 XXXXXXXXXXXXXXRNMVLGKKAFFVNPSDSLAVLAAHL-DSIPYFKKTGVKGYARSMPT 332
+V A +NP+ LAV +L P + K G +++ +
Sbjct: 320 KFDLAFANDPDYDRHGIV--TPAGLMNPNHYLAVAINYLFQHRPLWGKDVAVG--KTLVS 375
Query: 333 GAAVDRVAKANNKELFEVPTGWKYFGNLMDAGRLSLCGEESFGT------GSDHIREKDG 386
A +DRV ++L EVP G+K+F + + G GEES G G+ +KDG
Sbjct: 376 SAMIDRVVNDLGRKLVEVPVGFKWFVDGLFDGSFGFGGEESAGASFLRFDGTPWSTDKDG 435
Query: 387 IWAVLAWLSVVEHTGKPVEEILKSHWKQYGRNYFTRYDYENCSA--APCNQMMDELEKKV 444
I L + TGK +E ++G + R SA A +++ E+ V
Sbjct: 436 IIMCLLAAEITAVTGKNPQEHYNELAARFGAPSYNRLQASATSAQKAALSKLSPEM---V 492
Query: 445 SAPEFKGVTLSA 456
SA G ++A
Sbjct: 493 SASTLAGDPITA 504
>pdb|3OLP|A Chain A, Crystal Structure Of A Bacterial Phosphoglucomutase, An
Enzyme Important In The Virulence Of Multiple Human
Pathogens
pdb|3OLP|B Chain B, Crystal Structure Of A Bacterial Phosphoglucomutase, An
Enzyme Important In The Virulence Of Multiple Human
Pathogens
Length = 570
Score = 88.6 bits (218), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 113/432 (26%), Positives = 177/432 (40%), Gaps = 46/432 (10%)
Query: 45 SGIRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQVTG 104
+GI VG D + A ++++ AANGV ++ NG TPAVS I H G
Sbjct: 99 NGITGPCYVGKDTHALSEPAFISVLEVLAANGVDVIVQENNGFTPTPAVSNAILVHNKKG 158
Query: 105 -----GIVLTASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITTQIKTYSIVPDLKV 159
GIV+T SHNP P+ D GIK+N NGGPA VT+ + + L
Sbjct: 159 GPLADGIVITPSHNP--PE-DGGIKYNPPNGGPADTNVTKVVEDRANAL--------LAG 207
Query: 160 DITSIGSSSYEVDGAQFQVDVIDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINA 219
+ + S + A V +D V+ +++ + +I D +Q + L ++
Sbjct: 208 GLQGVKRISLDAAMASGHVKAVDLVQPFVEGLADIVDMAAIQ--------KAGLTLGVDP 259
Query: 220 MHGVTGPYVKKIF------LEELGAQPDNAVNTTPLPDFGGHHPDPNLTYAADLVQAMQX 273
+ G Y K+I L + Q D L G D + A + A++
Sbjct: 260 LGGSGIEYWKRIAEHYKLNLTLVNDQVDQTFRFMHLDKDGAIRMDCSSECAMAGLLALRD 319
Query: 274 XXXXXXXXXXXXXXRNMVLGKKAFFVNPSDSLAVLAAHL-DSIPYFKKTGVKGYARSMPT 332
+V A +NP+ LAV +L P + K G +++ +
Sbjct: 320 KFDLAFANDPDYDRHGIV--TPAGLMNPNHYLAVAINYLFQHRPLWGKDVAVG--KTLVS 375
Query: 333 GAAVDRVAKANNKELFEVPTGWKYFGNLMDAGRLSLCGEESFGT------GSDHIREKDG 386
A +DRV ++L EVP G+K+F + + G GEES G G+ +KDG
Sbjct: 376 SAMIDRVVNDLGRKLVEVPVGFKWFVDGLFDGSFGFGGEESAGASFLRFDGTPWSTDKDG 435
Query: 387 IWAVLAWLSVVEHTGKPVEEILKSHWKQYGRNYFTRYDYENCSA--APCNQMMDELEKKV 444
I L + TGK +E ++G + R SA A +++ E+ V
Sbjct: 436 IIMCLLAAEITAVTGKNPQEHYNELAARFGAPSYNRLQASATSAQKAALSKLSPEM---V 492
Query: 445 SAPEFKGVTLSA 456
SA G ++A
Sbjct: 493 SASTLAGDPITA 504
>pdb|2FUV|A Chain A, Phosphoglucomutase From Salmonella Typhimurium.
pdb|2FUV|B Chain B, Phosphoglucomutase From Salmonella Typhimurium
Length = 549
Score = 88.6 bits (218), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 106/404 (26%), Positives = 163/404 (40%), Gaps = 41/404 (10%)
Query: 45 SGIRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQVTG 104
+GI VG D + A ++++ AANGV ++ NG TPAVS I H G
Sbjct: 78 NGITGPCYVGKDTHALSEPAFISVLEVLAANGVDVIVQENNGFTPTPAVSNAILVHNKKG 137
Query: 105 -----GIVLTASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITTQIKTYSIVPDLKV 159
GIV+T SHNP P+ D GIK+N NGGPA VT+ + + L
Sbjct: 138 GPLADGIVITPSHNP--PE-DGGIKYNPPNGGPADTNVTKVVEDRANAL--------LAG 186
Query: 160 DITSIGSSSYEVDGAQFQVDVIDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINA 219
+ + S + A V +D V+ +++ + +I D +Q + L ++
Sbjct: 187 GLQGVKRISLDAAXASGHVKAVDLVQPFVEGLADIVDXAAIQ--------KAGLTLGVDP 238
Query: 220 MHGVTGPYVKKIF------LEELGAQPDNAVNTTPLPDFGGHHPDPNLTYAADLVQAMQX 273
+ G Y K+I L + Q D L G D + A + A++
Sbjct: 239 LGGSGIEYWKRIAEHYKLNLTLVNDQVDQTFRFXHLDKDGAIRXDCSSECAXAGLLALRD 298
Query: 274 XXXXXXXXXXXXXXRNMVLGKKAFFVNPSDSLAVLAAHL-DSIPYFKKTGVKGYARSMPT 332
+V A NP+ LAV +L P + K G +++ +
Sbjct: 299 KFDLAFANDPDYDRHGIV--TPAGLXNPNHYLAVAINYLFQHRPLWGKDVAVG--KTLVS 354
Query: 333 GAAVDRVAKANNKELFEVPTGWKYFGNLMDAGRLSLCGEESFGT------GSDHIREKDG 386
A +DRV ++L EVP G+K+F + + G GEES G G+ +KDG
Sbjct: 355 SAXIDRVVNDLGRKLVEVPVGFKWFVDGLFDGSFGFGGEESAGASFLRFDGTPWSTDKDG 414
Query: 387 IWAVLAWLSVVEHTGKPVEEILKSHWKQYGRNYFTRYDYENCSA 430
I L + TGK +E ++G + R SA
Sbjct: 415 IIXCLLAAEITAVTGKNPQEHYNELAARFGAPSYNRLQASATSA 458
>pdb|1TUO|A Chain A, Crystal Structure Of Putative Phosphomannomutase From
Thermus Thermophilus Hb8
Length = 464
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 96/367 (26%), Positives = 147/367 (40%), Gaps = 50/367 (13%)
Query: 50 VLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQVTGGIVLT 109
++VVG D R+ D + A G+ +++ G + TP +S +R + GG +LT
Sbjct: 50 LVVVGHDTRFLADAFARALSGHLAGMGLKVVLL--KGPVPTPLLSFAVRHLKAAGGAMLT 107
Query: 110 ASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITTQIKTYSIVPDLKVDITSIGSSSY 169
ASHN P G+KF + GGP + I ++VP+ +
Sbjct: 108 ASHN---PPQYLGVKFKDATGGPIAQEEAKAI---------EALVPE----------EAR 145
Query: 170 EVDGAQFQVDVIDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINAMHGVTGPYVK 229
++GA + +D E Y + +K D L G SG L ++M G ++K
Sbjct: 146 ALEGAY---ETLDLREAYFEALKAHLDLKALS----GFSG----VLYHDSMGGAGAGFLK 194
Query: 230 KIFLEELGAQ-PDNAVNTTPLPDFGGHHPDP---NLTYAADLVQAMQXXXXXXXXXXXXX 285
FL +G + P + P P F G +P+P NL L
Sbjct: 195 G-FLRHVGLEIPVRPIREEPHPLFHGVNPEPIPKNL--GVTLAVLGPETPPSFAVATDGD 251
Query: 286 XXRNMVLGKKAFFVNPSDSLAVLAAHLDSIPYFKKTGVKGYA-RSMPTGAAVDRVAKANN 344
R V+ F NP L LA Y + G +G A ++ +DR+ +
Sbjct: 252 ADRVGVVLPGGVFFNPHQVLTTLAL------YRFRKGHRGRAVKNFAVTWLLDRLGERLG 305
Query: 345 KELFEVPTGWKYFGNLMDAGRLSLCGEESFGTG-SDHIREKDGIWAVLAWLSVVEHTGKP 403
+ P G+K+ G + GEES G G +H+ E+DGI L L V TGK
Sbjct: 306 FGVTTTPVGFKWIKEEFLKGDCFIGGEESGGVGYPEHLPERDGILTSLLLLESVAATGKD 365
Query: 404 VEEILKS 410
+ E K
Sbjct: 366 LAEQFKE 372
>pdb|2Z0F|A Chain A, Crystal Structure Of Putative Phosphoglucomutase From
Thermus Thermophilus Hb8
pdb|2Z0F|B Chain B, Crystal Structure Of Putative Phosphoglucomutase From
Thermus Thermophilus Hb8
Length = 524
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 100/440 (22%), Positives = 170/440 (38%), Gaps = 53/440 (12%)
Query: 37 AVDKIIKISGIRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSAL 96
A+ ++ G L + D + A + + AA+G+ + TP VS
Sbjct: 51 AIAELRPSFGATGPLFLAKDTHALSEPAWATALSVFAAHGIEVRVEADGDYTPTPLVSLA 110
Query: 97 IRKHQV-----TGGIVLTASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITTQIKTY 151
I +H G++LT SHNP D G K+N GGPA +T I + +
Sbjct: 111 ILEHNAHHEAKADGVLLTPSHNP---PEDGGFKYNPPTGGPANARITRAIEERANALLQE 167
Query: 152 SIVPDLKVDITSIGSSSYEVDGAQFQVDVIDSVEVYLQLMKEIFDFPKLQSLIKGSSGRP 211
+ G + A + D +Y++ + E D +++ SG
Sbjct: 168 GLK----------GVKRLPLREALARAKPFDYAGLYVEKVAEAVDLEAIRA-----SG-- 210
Query: 212 PFKLLINAMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDF--------GGHHPDPNLTY 263
++ ++ + G + ++ L E P VN T P F G D + Y
Sbjct: 211 -LRIGVDPLGGASLRVWER--LAESHGLPLEVVNPTLDPTFRFMPKDHDGKIRMDCSSPY 267
Query: 264 AADLVQAMQXXXXXXXXXXXXXXXRNMVLGKKAFFVNPSDSLAVLAAHLDSIPYFKKTGV 323
A + A++ +V + +NP+ LA HL + + V
Sbjct: 268 AMAGLLALKDRFDLAIGNDPDADRHGIVTPRG--LMNPNHYLAAALHHLYTTRSWPGAKV 325
Query: 324 KGYARSMPTGAAVDRVAKANNKELFEVPTGWKYFGNLMDAGRLSLCGEESFGT------G 377
++ T A +DRVA+A +E++E P G+K+F + G L GEES G G
Sbjct: 326 ---GKTAVTSALLDRVAQALGREVYETPVGFKHFVAGLLEGWLGFAGEESAGASFLRFDG 382
Query: 378 SDHIREKDGIWAVLAWLSVVEHTGKPVEEILKSHWKQYGRNYFTRYDYENCSAAPCNQMM 437
+KDGI L ++ G+ + + ++ ++ GR Y+ R D P +
Sbjct: 383 RPFSTDKDGILMGLLAAELMAKRGQAPDALYEALAEKLGRPYYARKDL------PVSPEA 436
Query: 438 DELEKKVSAPEFKGVTLSAE 457
++SA E TL+ E
Sbjct: 437 KARLARLSAKEVHPSTLAGE 456
>pdb|1WQA|A Chain A, Crystal Structure Of Pyrococcus Horikoshii
PhosphomannomutasePHOSPHOGLUCOMUTASE COMPLEXED WITH MG2+
pdb|1WQA|B Chain B, Crystal Structure Of Pyrococcus Horikoshii
PhosphomannomutasePHOSPHOGLUCOMUTASE COMPLEXED WITH MG2+
pdb|1WQA|C Chain C, Crystal Structure Of Pyrococcus Horikoshii
PhosphomannomutasePHOSPHOGLUCOMUTASE COMPLEXED WITH MG2+
pdb|1WQA|D Chain D, Crystal Structure Of Pyrococcus Horikoshii
PhosphomannomutasePHOSPHOGLUCOMUTASE COMPLEXED WITH MG2+
Length = 455
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 84/374 (22%), Positives = 152/374 (40%), Gaps = 49/374 (13%)
Query: 48 RSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQVTGGIV 107
+ ++VVG D R G++ + +I + G + VG I TPAV + GG V
Sbjct: 41 KPLVVVGRDTRVSGEMLKEALISGLLSVGCDVIDVG---IAPTPAVQWATKHFNADGGAV 97
Query: 108 LTASHNPGGPDNDFGIKFNTSNG---GPAPDAVTENIYKITTQIKTYSIVPDLKVDITSI 164
+TASHNP P+ + GIK NG +A+ E ++ K D
Sbjct: 98 ITASHNP--PEYN-GIKLLEPNGMGLKKEREAIVEELF--------------FKEDFDR- 139
Query: 165 GSSSYEVDGAQFQVDVIDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLL--INAMHG 222
+ YE+ +V D ++ Y++ +K D ++ R PF ++ N
Sbjct: 140 -AKWYEIG----EVRREDIIKPYIEAIKSKVDVEAIKK-------RKPFVVVDTSNGAGS 187
Query: 223 VTGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDPNLTYAADLVQAMQXXXXXXXXXX 282
+T PY+ L ELG + VN P F +P+PN + ++ ++
Sbjct: 188 LTLPYL----LRELGCKVIT-VNAQPDGYFPARNPEPNEENLKEFMEIVKALGADFGVAQ 242
Query: 283 XXXXXRNMVLGKKAFFVNPSDSLAVLAAHLDSIPYFKKTGVKGYARSMPTGAAVDRVAKA 342
R + + + F+ + A++A D++ K+ G ++ T +D +AK
Sbjct: 243 DGDADRAVFIDENGRFIQGDKTFALVA---DAV--LKEKGGGLLVTTVATSNLLDDIAKK 297
Query: 343 NNKELFEVPTGWKYFGNLMDAGRLSLCGEESFGT-GSDHIREKDGIWAVLAWLSVVEHTG 401
+ ++ G + ++ GEE+ G +H+ +DG V + + +G
Sbjct: 298 HGAKVMRTKVGDLIVARALYENNGTIGGEENGGVIFPEHVLGRDGAMTVAKVVEIFAKSG 357
Query: 402 KPVEEILKSHWKQY 415
K E++ K Y
Sbjct: 358 KKFSELIDELPKYY 371
>pdb|3PDK|A Chain A, Crystal Structure Of Phosphoglucosamine Mutase From B.
Anthracis
pdb|3PDK|B Chain B, Crystal Structure Of Phosphoglucosamine Mutase From B.
Anthracis
Length = 469
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 81/374 (21%), Positives = 144/374 (38%), Gaps = 65/374 (17%)
Query: 48 RSVLVVGGDGRYFGDVAVDKIIK--ISAANGVAKLIVGQNGILSTPAVSALIRKHQVTGG 105
R +++G D R G + ++ +S V +L G++STP V+ L + G
Sbjct: 61 RPKVIIGRDTRISGHMLEGALVAGLLSTGAEVMRL-----GVISTPGVAYLTKALDAQAG 115
Query: 106 IVLTASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITTQIKTYSIVPDLKVDITSIG 165
++++ASHN P D GIKF S+G D I + K +P + T++G
Sbjct: 116 VMISASHN---PVQDNGIKFFGSDGFKLTDEQEAEIEALLD--KEVDELP--RPTGTNLG 168
Query: 166 SSSYEVDGAQFQVDVIDSVEVYLQLMKEIF--DFPKLQSLIKGSSGRPPFKLLINAMHGV 223
S +G Q YLQ +K+ DF L + ++ HG
Sbjct: 169 QVSDYFEGGQ----------KYLQYIKQTVEEDFSGLH-------------IALDCAHGA 205
Query: 224 TGPYVKKIF------LEELGAQPDNAVNTTPLPDFGGHHPDPNLTYAADLVQAMQXXXXX 277
T +F + +G P N +N G HP+ L + ++
Sbjct: 206 TSSLAPYLFADLEADISTMGTSP-NGMNIN--DGVGSTHPEV-------LAELVKEKGAD 255
Query: 278 XXXXXXXXXXRNMVLGKKAFFVNPSDSLAVLAAHLDSIPYFKKTGVKGYARSMPTGAAVD 337
R + + +K V+ + + A ++ K V ++ +
Sbjct: 256 IGLAFDGDGDRLIAVDEKGNIVDGDQIMFICAKYMKETGQLKHNTV---VSTVMSNLGFY 312
Query: 338 RVAKANNKELFEVPTGWKYFGNLMDAGRLSLCGEESFGTGS----DHIREKDGIWAVLAW 393
+ +AN + G +Y M G +L GE+S G D+I DG+ + L
Sbjct: 313 KALEANGITSDKTAVGDRYVMEEMKRGGYNLGGEQS---GHIILLDYITTGDGMLSALQL 369
Query: 394 LSVVEHTGKPVEEI 407
+++++ T KP+ E+
Sbjct: 370 VNIMKMTKKPLSEL 383
>pdb|3I3W|A Chain A, Structure Of A Phosphoglucosamine Mutase From Francisella
Tularensis
pdb|3I3W|B Chain B, Structure Of A Phosphoglucosamine Mutase From Francisella
Tularensis
Length = 443
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 48/105 (45%), Gaps = 6/105 (5%)
Query: 37 AVDKIIKISGIRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSAL 96
AV +I ++VG D R G K +S N A + V G++ TP V+
Sbjct: 30 AVGSLINQKNYPKFVIVGQDTRSSGGFL--KFALVSGLNA-AGIDVLDLGVVPTPVVAFX 86
Query: 97 IRKHQVTGGIVLTASHNPGGPDNDFGIKFNTSNGGPAPDAVTENI 141
KH+ G V+TA HN D GIK +SNG DA+ E +
Sbjct: 87 TVKHRAAAGFVITAXHNKF---TDNGIKLFSSNGFKLDDALEEEV 128
>pdb|3UW2|A Chain A, X-Ray Crystal Structure Of
PhosphoglucomutasePHOSPHOMANNOMUTASE Family Protein
(Bth_i1489)from Burkholderia Thailandensis
Length = 485
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 67/161 (41%), Gaps = 39/161 (24%)
Query: 99 KHQVTGGIVLTASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITTQIKTYSIVPDLK 158
+ +V IV+T SHNP PD + G K D + + +YK + +
Sbjct: 118 ERRVDSCIVVTGSHNP--PDYN-GFKMVLRGAAIYGDQI-QGLYKRIVDARFET------ 167
Query: 159 VDITSIGSSSYEVDGAQFQVDVIDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLIN 218
GS SYE Q DV D Q ++ I KL P KL+++
Sbjct: 168 ------GSGSYE------QYDVAD------QYVERIVGDIKLTR---------PLKLVVD 200
Query: 219 AMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDP 259
A +GV GP ++F + LG + + T +F HHPDP
Sbjct: 201 AGNGVAGPLATRLF-KALGCELVE-LFTDIDGNFPNHHPDP 239
>pdb|2F7L|A Chain A, Crystal Structure Of Sulfolobus Tokodaii
PhosphomannomutasePHOSPHOGLUCOMUTASE
pdb|2F7L|B Chain B, Crystal Structure Of Sulfolobus Tokodaii
PhosphomannomutasePHOSPHOGLUCOMUTASE
Length = 455
Score = 35.4 bits (80), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 43/85 (50%), Gaps = 6/85 (7%)
Query: 46 GIRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQVTGG 105
G S ++VG D R GD+ V + + GV V G+ TPA+ ++ GG
Sbjct: 35 GKNSKILVGRDVRAGGDMLVKIVEGGLLSVGVE---VYDGGMAPTPALQYAVKTLGYDGG 91
Query: 106 IVLTASHNPGGPDNDFGIKFNTSNG 130
+V+TASHNP P N GIK +G
Sbjct: 92 VVITASHNP-APYN--GIKVVDKDG 113
>pdb|3EMR|A Chain A, Crystal Structure Analysis Of The Ectoine Hydroxylase Ectd
From Salibacillus Salexigens
Length = 310
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Query: 35 DVAVDKIIK---ISGIRSVLVVGGDGRYFGDVAVDKII 69
DVA DK+I+ + IRS+ V D YF DVA DK I
Sbjct: 76 DVASDKVIREPESNDIRSIFHVHQDDNYFQDVANDKRI 113
>pdb|1K2Y|X Chain X, Crystal Structure Of Phosphomannomutase/phosphoglucomutase
S108a Mutant From P. Aeruginosa
Length = 463
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 86/215 (40%), Gaps = 52/215 (24%)
Query: 50 VLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQVTGGIVLT 109
+ VG DGR G V ++I+ G V G++ TP + + G++LT
Sbjct: 50 CVAVGRDGRLSGPELVKQLIQGLVDCGCQ---VSDVGMVPTPVLYYAANVLEGKSGVMLT 106
Query: 110 ASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITTQIKTYSIVPDLKVDITSIGSSSY 169
+HNP PD + G K + A E I + +I+ K D+ S G S
Sbjct: 107 GAHNP--PDYN-GFKIVVAGETLA----NEQIQALRERIE--------KNDLAS-GVGSV 150
Query: 170 EVDGAQFQVDVIDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINAMHGVTGPYVK 229
E QVD++ Y + +++ K P K++++ +GV G +
Sbjct: 151 E------QVDILPR---YFKQIRDDIAMAK------------PMKVVVDCGNGVAG-VIA 188
Query: 230 KIFLEELGAQPDNAVNTTPL-----PDFGGHHPDP 259
+E LG + PL +F HHPDP
Sbjct: 189 PQLIEALGC------SVIPLYCEVDGNFPNHHPDP 217
>pdb|3RSM|A Chain A, Crystal Structure Of S108c Mutant Of PmmPGM
Length = 463
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 85/215 (39%), Gaps = 52/215 (24%)
Query: 50 VLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQVTGGIVLT 109
+ VG DGR G V ++I+ G V G++ TP + + G++LT
Sbjct: 50 CVAVGRDGRLSGPELVKQLIQGLVDCGCQ---VSDVGMVPTPVLYYAANVLEGKSGVMLT 106
Query: 110 ASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITTQIKTYSIVPDLKVDITSIGSSSY 169
HNP PD + G K + A E I + +I+ K D+ S G S
Sbjct: 107 GCHNP--PDYN-GFKIVVAGETLA----NEQIQALRERIE--------KNDLAS-GVGSV 150
Query: 170 EVDGAQFQVDVIDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINAMHGVTGPYVK 229
E QVD++ Y + +++ K P K++++ +GV G +
Sbjct: 151 E------QVDILPR---YFKQIRDDIAMAK------------PMKVVVDCGNGVAG-VIA 188
Query: 230 KIFLEELGAQPDNAVNTTPL-----PDFGGHHPDP 259
+E LG + PL +F HHPDP
Sbjct: 189 PQLIEALGC------SVIPLYCEVDGNFPNHHPDP 217
>pdb|2FKM|X Chain X, Pmm/pgm S108d Mutant With Alpha-d-glucose 1,6-bisphosphate
Bound
Length = 462
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 85/215 (39%), Gaps = 52/215 (24%)
Query: 50 VLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQVTGGIVLT 109
+ VG DGR G V ++I+ G V G++ TP + + G++LT
Sbjct: 49 CVAVGRDGRLSGPELVKQLIQGLVDCGCQ---VSDVGMVPTPVLYYAANVLEGKSGVMLT 105
Query: 110 ASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITTQIKTYSIVPDLKVDITSIGSSSY 169
HNP PD + G K + A E I + +I+ K D+ S G S
Sbjct: 106 GDHNP--PDYN-GFKIVVAGETLA----NEQIQALRERIE--------KNDLAS-GVGSV 149
Query: 170 EVDGAQFQVDVIDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINAMHGVTGPYVK 229
E QVD++ Y + +++ K P K++++ +GV G +
Sbjct: 150 E------QVDILPR---YFKQIRDDIAMAK------------PMKVVVDCGNGVAG-VIA 187
Query: 230 KIFLEELGAQPDNAVNTTPL-----PDFGGHHPDP 259
+E LG + PL +F HHPDP
Sbjct: 188 PQLIEALGC------SVIPLYCEVDGNFPNHHPDP 216
>pdb|1P5D|X Chain X, Enzyme-Ligand Complex Of P. Aeruginosa PmmPGM
pdb|1P5G|X Chain X, Enzyme-Ligand Complex Of P. Aeruginosa PmmPGM
pdb|1PCJ|X Chain X, Enzyme-Ligand Complex Of P. Aeruginosa PmmPGM
pdb|1PCM|X Chain X, Enzyme-Ligand Complex Of P. Aeruginosa PmmPGM
Length = 463
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 85/215 (39%), Gaps = 52/215 (24%)
Query: 50 VLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQVTGGIVLT 109
+ VG DGR G V ++I+ G V G++ TP + + G++LT
Sbjct: 50 CVAVGRDGRLSGPELVKQLIQGLVDCGCQ---VSDVGMVPTPVLYYAANVLEGKSGVMLT 106
Query: 110 ASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITTQIKTYSIVPDLKVDITSIGSSSY 169
HNP PD + G K + A E I + +I+ K D+ S G S
Sbjct: 107 GXHNP--PDYN-GFKIVVAGETLA----NEQIQALRERIE--------KNDLAS-GVGSV 150
Query: 170 EVDGAQFQVDVIDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINAMHGVTGPYVK 229
E QVD++ Y + +++ K P K++++ +GV G +
Sbjct: 151 E------QVDILPR---YFKQIRDDIAMAK------------PMKVVVDCGNGVAG-VIA 188
Query: 230 KIFLEELGAQPDNAVNTTPL-----PDFGGHHPDP 259
+E LG + PL +F HHPDP
Sbjct: 189 PQLIEALGC------SVIPLYCEVDGNFPNHHPDP 217
>pdb|2H4L|X Chain X, Complex Of PmmPGM WITH RIBOSE 1-Phosphate
pdb|2H5A|X Chain X, Complex Of The Enzyme PmmPGM WITH XYLOSE 1-Phosphate
Length = 463
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 85/215 (39%), Gaps = 52/215 (24%)
Query: 50 VLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQVTGGIVLT 109
+ VG DGR G V ++I+ G V G++ TP + + G++LT
Sbjct: 50 CVAVGRDGRLSGPELVKQLIQGLVDCGCQ---VSDVGMVPTPVLYYAANVLEGKSGVMLT 106
Query: 110 ASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITTQIKTYSIVPDLKVDITSIGSSSY 169
HNP PD + G K + A E I + +I+ K D+ S G S
Sbjct: 107 GXHNP--PDYN-GFKIVVAGETLA----NEQIQALRERIE--------KNDLAS-GVGSV 150
Query: 170 EVDGAQFQVDVIDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINAMHGVTGPYVK 229
E QVD++ Y + +++ K P K++++ +GV G +
Sbjct: 151 E------QVDILPR---YFKQIRDDIAMAK------------PMKVVVDCGNGVAG-VIA 188
Query: 230 KIFLEELGAQPDNAVNTTPL-----PDFGGHHPDP 259
+E LG + PL +F HHPDP
Sbjct: 189 PQLIEALGC------SVIPLYCEVDGNFPNHHPDP 217
>pdb|2FKF|A Chain A, PhosphomannomutasePHOSPHOGLUCOMUTASE FROM PSEUDOMONAS
AERUGINOSA WITH Alpha-D-Glucose 1,6-Bisphosphate Bound
Length = 462
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 85/215 (39%), Gaps = 52/215 (24%)
Query: 50 VLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQVTGGIVLT 109
+ VG DGR G V ++I+ G V G++ TP + + G++LT
Sbjct: 49 CVAVGRDGRLSGPELVKQLIQGLVDCGCQ---VSDVGMVPTPVLYYAANVLEGKSGVMLT 105
Query: 110 ASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITTQIKTYSIVPDLKVDITSIGSSSY 169
HNP PD + G K + A E I + +I+ K D+ S G S
Sbjct: 106 GXHNP--PDYN-GFKIVVAGETLA----NEQIQALRERIE--------KNDLAS-GVGSV 149
Query: 170 EVDGAQFQVDVIDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINAMHGVTGPYVK 229
E QVD++ Y + +++ K P K++++ +GV G +
Sbjct: 150 E------QVDILPR---YFKQIRDDIAMAK------------PMKVVVDCGNGVAG-VIA 187
Query: 230 KIFLEELGAQPDNAVNTTPL-----PDFGGHHPDP 259
+E LG + PL +F HHPDP
Sbjct: 188 PQLIEALGC------SVIPLYCEVDGNFPNHHPDP 216
>pdb|3BKQ|X Chain X, Structure Of The P368g Mutant Of PmmPGM IN COMPLEX WITH
ITS SUBSTRATE
pdb|3C04|A Chain A, Structure Of The P368g Mutant Of PmmPGM FROM P. AERUGINOSA
Length = 463
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 85/215 (39%), Gaps = 52/215 (24%)
Query: 50 VLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQVTGGIVLT 109
+ VG DGR G V ++I+ G V G++ TP + + G++LT
Sbjct: 50 CVAVGRDGRLSGPELVKQLIQGLVDCGCQ---VSDVGMVPTPVLYYAANVLEGKSGVMLT 106
Query: 110 ASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITTQIKTYSIVPDLKVDITSIGSSSY 169
HNP PD + G K + A E I + +I+ K D+ S G S
Sbjct: 107 GXHNP--PDYN-GFKIVVAGETLA----NEQIQALRERIE--------KNDLAS-GVGSV 150
Query: 170 EVDGAQFQVDVIDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINAMHGVTGPYVK 229
E QVD++ Y + +++ K P K++++ +GV G +
Sbjct: 151 E------QVDILPR---YFKQIRDDIAMAK------------PMKVVVDCGNGVAG-VIA 188
Query: 230 KIFLEELGAQPDNAVNTTPL-----PDFGGHHPDP 259
+E LG + PL +F HHPDP
Sbjct: 189 PQLIEALGC------SVIPLYCEVDGNFPNHHPDP 217
>pdb|2E67|A Chain A, Crystal Structure Of The Hypothetical Protein Tthb029 From
Thermus Thermophilus Hb8
pdb|2E67|B Chain B, Crystal Structure Of The Hypothetical Protein Tthb029 From
Thermus Thermophilus Hb8
pdb|2E67|C Chain C, Crystal Structure Of The Hypothetical Protein Tthb029 From
Thermus Thermophilus Hb8
pdb|2E67|D Chain D, Crystal Structure Of The Hypothetical Protein Tthb029 From
Thermus Thermophilus Hb8
pdb|2E67|E Chain E, Crystal Structure Of The Hypothetical Protein Tthb029 From
Thermus Thermophilus Hb8
pdb|2E67|F Chain F, Crystal Structure Of The Hypothetical Protein Tthb029 From
Thermus Thermophilus Hb8
Length = 264
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 18/157 (11%)
Query: 103 TGGIVLTASHNPGGPDNDFGIKFNTSNGGPAPDA---------------VTENIYKITTQ 147
TG +++ + G D G+ ++ PAP E++ + +
Sbjct: 39 TGSVMVPGAWASGVKGEDLGVHLVLTSEWPAPRMRPLTEGESLRDEAGYFPESLEALWRK 98
Query: 148 IKTYSIVPDLKVDITSIGS--SSYEVDGAQFQVDVIDSVEVYLQLMKEIFDFPKLQSLIK 205
+ + +LK I + S +D Q V D EVYL+L + P + ++
Sbjct: 99 ARAEEVERELKAQIQAAAKLFSPTHLDAHQGAVLRPDLAEVYLRLAEAYRLVPLVPESLE 158
Query: 206 GSSGRPPFKLLINAMHGVTGPYVKKIFLEELGAQPDN 242
G PPF + + T P+ + FL+ G P+
Sbjct: 159 GLGVPPPFLPELERLLYET-PFPQVRFLDPYGLPPEE 194
>pdb|1UM9|A Chain A, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
Thermophilus Hb8 In Apo-form
pdb|1UM9|C Chain C, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
Thermophilus Hb8 In Apo-form
pdb|1UMB|A Chain A, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 In Holo-Form
pdb|1UMB|C Chain C, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 In Holo-Form
pdb|1UMC|A Chain A, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methylpentanoate
pdb|1UMC|C Chain C, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methylpentanoate
pdb|1UMD|A Chain A, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
Intermediate
pdb|1UMD|C Chain C, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
Intermediate
Length = 367
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 38/99 (38%), Gaps = 7/99 (7%)
Query: 91 PAVSALIRKHQVTGGIVLTASHNPGG-PDNDF--GIKFNTSNGGPAPDAVTENIYKITTQ 147
PA A I + G V + G + D+ GI F G PA N Y I+
Sbjct: 152 PAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGINFAAVQGAPAVFIAENNFYAISVD 211
Query: 148 IKTYSIVPDLKVDITSIGSSSYEVDGAQFQVDVIDSVEV 186
+ + P + + G Y VDG +DV+ S V
Sbjct: 212 YRHQTHSPTIADKAHAFGIPGYLVDG----MDVLASYYV 246
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,699,653
Number of Sequences: 62578
Number of extensions: 688076
Number of successful extensions: 1866
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1805
Number of HSP's gapped (non-prelim): 48
length of query: 499
length of database: 14,973,337
effective HSP length: 103
effective length of query: 396
effective length of database: 8,527,803
effective search space: 3377009988
effective search space used: 3377009988
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)