Query psy5979
Match_columns 499
No_of_seqs 182 out of 2102
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 23:28:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5979.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5979hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03085 PGM1 Phosphoglucomutas 100.0 3.4E-82 7.3E-87 680.1 47.4 434 49-490 50-495 (548)
2 cd05800 PGM_like2 This PGM-lik 100.0 6.9E-82 1.5E-86 670.7 44.0 419 29-493 19-439 (461)
3 cd05803 PGM_like4 This PGM-lik 100.0 6.9E-82 1.5E-86 667.3 39.0 405 31-493 20-426 (445)
4 cd03089 PMM_PGM The phosphoman 100.0 2.1E-81 4.6E-86 663.5 38.2 403 29-495 18-423 (443)
5 PRK14321 glmM phosphoglucosami 100.0 3.6E-80 7.8E-85 654.2 36.7 396 32-493 24-420 (449)
6 cd05805 MPG1_transferase GTP-m 100.0 3.3E-80 7.2E-85 654.0 35.5 401 29-494 18-420 (441)
7 cd03087 PGM_like1 This archaea 100.0 1.4E-79 3E-84 649.2 37.1 394 33-493 22-417 (439)
8 PRK09542 manB phosphomannomuta 100.0 5.3E-79 1.1E-83 644.6 37.5 412 17-494 7-421 (445)
9 PLN02307 phosphoglucomutase 100.0 1.8E-77 4E-82 644.3 44.8 444 34-489 46-525 (579)
10 PRK15414 phosphomannomutase Cp 100.0 2.4E-78 5.3E-83 641.0 37.4 419 12-495 7-433 (456)
11 TIGR01132 pgm phosphoglucomuta 100.0 1.1E-77 2.3E-82 647.6 41.0 433 29-494 58-516 (543)
12 PRK07564 phosphoglucomutase; V 100.0 1.5E-76 3.2E-81 638.6 44.8 423 30-493 58-514 (543)
13 cd05801 PGM_like3 This bacteri 100.0 8.1E-77 1.8E-81 638.4 42.1 433 29-493 40-499 (522)
14 PLN02371 phosphoglucosamine mu 100.0 6.7E-77 1.4E-81 644.6 40.9 442 11-494 67-545 (583)
15 cd05799 PGM2 This CD includes 100.0 4.6E-76 9.9E-81 629.8 41.3 407 31-493 25-464 (487)
16 COG1109 {ManB} Phosphomannomut 100.0 8.7E-76 1.9E-80 622.4 39.3 418 17-496 16-438 (464)
17 PTZ00150 phosphoglucomutase-2- 100.0 2.3E-75 5E-80 633.9 40.5 427 35-490 72-539 (584)
18 PRK14317 glmM phosphoglucosami 100.0 2.3E-75 4.9E-80 620.2 36.3 400 29-495 35-440 (465)
19 PRK14315 glmM phosphoglucosami 100.0 3.9E-75 8.4E-80 616.0 31.8 408 17-494 12-422 (448)
20 cd05802 GlmM GlmM is a bacteri 100.0 6.8E-75 1.5E-79 612.3 33.1 406 17-493 8-415 (434)
21 PRK10887 glmM phosphoglucosami 100.0 5.8E-74 1.3E-78 606.2 37.3 392 29-494 21-418 (443)
22 PRK14324 glmM phosphoglucosami 100.0 4.1E-74 8.9E-79 607.1 34.8 361 17-416 10-372 (446)
23 PRK14323 glmM phosphoglucosami 100.0 1.6E-73 3.4E-78 602.7 32.3 405 12-494 6-414 (440)
24 cd03088 ManB ManB is a bacteri 100.0 1.2E-72 2.5E-77 598.5 38.9 403 31-491 19-438 (459)
25 PRK14314 glmM phosphoglucosami 100.0 8.7E-73 1.9E-77 598.3 35.8 400 29-494 23-424 (450)
26 PRK14318 glmM phosphoglucosami 100.0 3.5E-73 7.6E-78 601.0 32.6 411 11-494 4-422 (448)
27 TIGR01455 glmM phosphoglucosam 100.0 1.2E-72 2.5E-77 596.5 35.6 392 29-493 18-419 (443)
28 PRK14316 glmM phosphoglucosami 100.0 3.2E-73 7E-78 601.9 30.1 407 17-494 10-420 (448)
29 PRK14320 glmM phosphoglucosami 100.0 3E-72 6.6E-77 593.1 31.9 394 28-495 21-418 (443)
30 PRK14322 glmM phosphoglucosami 100.0 8.2E-72 1.8E-76 587.5 33.3 391 17-494 12-406 (429)
31 KOG0625|consensus 100.0 9.4E-69 2E-73 525.2 40.4 455 2-490 34-505 (558)
32 PRK14319 glmM phosphoglucosami 100.0 1.2E-68 2.6E-73 563.7 31.9 344 17-413 10-355 (430)
33 KOG1220|consensus 100.0 5.3E-62 1.1E-66 498.7 35.2 424 38-490 90-560 (607)
34 cd03084 phosphohexomutase The 100.0 4.1E-58 9E-63 472.8 32.3 292 89-413 15-309 (355)
35 COG0033 Pgm Phosphoglucomutase 100.0 2.4E-56 5.2E-61 442.7 30.6 435 1-489 34-489 (524)
36 cd03086 PGM3 PGM3 (phosphogluc 100.0 6.3E-51 1.4E-55 433.4 28.8 343 46-496 100-494 (513)
37 PLN02895 phosphoacetylglucosam 100.0 3.6E-42 7.9E-47 365.1 27.4 334 47-496 126-532 (562)
38 PTZ00302 N-acetylglucosamine-p 100.0 1.4E-41 3.1E-46 363.2 29.7 290 48-417 152-499 (585)
39 PF02878 PGM_PMM_I: Phosphoglu 99.9 5.4E-27 1.2E-31 209.0 11.5 113 29-147 21-133 (137)
40 PF02880 PGM_PMM_III: Phosphog 99.9 2.5E-24 5.5E-29 185.3 8.8 112 300-415 1-113 (113)
41 PF02879 PGM_PMM_II: Phosphogl 99.9 7.3E-22 1.6E-26 167.5 11.8 102 185-296 1-104 (104)
42 KOG2537|consensus 99.6 4.3E-13 9.2E-18 137.1 21.4 279 46-416 122-456 (539)
43 PLN02895 phosphoacetylglucosam 98.6 1.3E-07 2.9E-12 101.8 7.8 68 65-145 31-98 (562)
44 PTZ00302 N-acetylglucosamine-p 98.4 2.2E-07 4.8E-12 100.7 5.3 43 102-147 75-117 (585)
45 cd03086 PGM3 PGM3 (phosphogluc 98.2 2.3E-06 4.9E-11 92.2 6.6 41 103-146 36-76 (513)
46 KOG2537|consensus 96.9 0.00051 1.1E-08 71.4 2.3 37 100-139 57-93 (539)
47 PF00408 PGM_PMM_IV: Phosphogl 96.8 0.00081 1.7E-08 52.9 2.4 31 466-496 23-53 (73)
48 PF02502 LacAB_rpiB: Ribose/Ga 81.5 6.5 0.00014 35.0 7.3 54 50-108 1-63 (140)
49 PRK08621 galactose-6-phosphate 80.4 8.9 0.00019 34.2 7.7 47 50-98 2-48 (142)
50 COG0426 FpaA Uncharacterized f 80.2 4.7 0.0001 41.9 6.8 69 36-109 235-304 (388)
51 TIGR01120 rpiB ribose 5-phosph 79.4 8.9 0.00019 34.2 7.4 32 50-83 1-32 (143)
52 PRK12613 galactose-6-phosphate 79.1 8.9 0.00019 34.1 7.3 43 50-97 2-46 (141)
53 TIGR01118 lacA galactose-6-pho 78.7 9.1 0.0002 34.1 7.2 46 50-97 2-47 (141)
54 PRK05571 ribose-5-phosphate is 78.1 8.9 0.00019 34.4 7.1 32 50-83 2-33 (148)
55 PF13155 Toprim_2: Toprim-like 77.1 9.9 0.00021 30.8 6.7 72 3-76 2-75 (96)
56 cd05805 MPG1_transferase GTP-m 77.0 4 8.7E-05 43.4 5.5 65 1-69 13-81 (441)
57 PRK14321 glmM phosphoglucosami 75.7 2.9 6.2E-05 44.7 3.9 33 2-34 17-49 (449)
58 cd03087 PGM_like1 This archaea 74.3 3.5 7.5E-05 43.9 4.1 64 2-69 14-80 (439)
59 TIGR00689 rpiB_lacA_lacB sugar 74.1 12 0.00026 33.4 6.8 45 51-97 1-47 (144)
60 cd05803 PGM_like4 This PGM-lik 73.9 4.3 9.4E-05 43.3 4.7 64 2-69 14-84 (445)
61 TIGR01119 lacB galactose-6-pho 73.8 15 0.00032 33.8 7.4 32 50-83 2-33 (171)
62 PTZ00215 ribose 5-phosphate is 72.9 16 0.00034 33.0 7.3 46 50-97 4-53 (151)
63 PRK12615 galactose-6-phosphate 72.7 16 0.00034 33.6 7.4 46 50-97 2-49 (171)
64 PRK08622 galactose-6-phosphate 72.4 17 0.00037 33.4 7.5 46 50-97 2-49 (171)
65 PRK15414 phosphomannomutase Cp 72.1 3.6 7.8E-05 44.1 3.6 42 2-43 19-63 (456)
66 COG0033 Pgm Phosphoglucomutase 69.9 2.5 5.4E-05 44.2 1.7 54 47-100 23-78 (524)
67 TIGR02133 RPI_actino ribose 5- 67.9 22 0.00048 31.9 7.1 46 50-97 2-50 (148)
68 cd03088 ManB ManB is a bacteri 66.0 6.9 0.00015 41.9 4.2 64 3-70 14-84 (459)
69 cd03089 PMM_PGM The phosphoman 65.8 5.4 0.00012 42.5 3.3 64 2-69 14-83 (443)
70 cd03085 PGM1 Phosphoglucomutas 64.5 7.9 0.00017 42.5 4.3 66 2-69 25-99 (548)
71 PRK14317 glmM phosphoglucosami 63.4 5.8 0.00012 42.6 3.0 33 2-34 31-68 (465)
72 cd05802 GlmM GlmM is a bacteri 63.1 9.4 0.0002 40.5 4.5 66 1-70 13-85 (434)
73 PRK09542 manB phosphomannomuta 62.5 5.8 0.00013 42.3 2.8 42 2-43 13-60 (445)
74 PF02878 PGM_PMM_I: Phosphoglu 62.1 9.7 0.00021 33.4 3.7 64 3-70 18-88 (137)
75 PRK14322 glmM phosphoglucosami 62.1 8.4 0.00018 40.9 3.9 33 2-34 18-50 (429)
76 PRK14316 glmM phosphoglucosami 58.7 10 0.00022 40.5 3.8 64 2-69 16-87 (448)
77 COG0698 RpiB Ribose 5-phosphat 58.6 36 0.00077 30.6 6.6 31 50-82 2-32 (151)
78 KOG2451|consensus 58.3 17 0.00036 37.6 4.9 79 32-114 131-228 (503)
79 PRK07564 phosphoglucomutase; V 56.7 15 0.00033 40.3 4.9 66 2-69 53-126 (543)
80 PLN02307 phosphoglucomutase 56.1 23 0.00051 39.1 6.2 66 3-70 38-112 (579)
81 PRK14318 glmM phosphoglucosami 56.0 9.2 0.0002 40.8 3.0 34 1-34 16-57 (448)
82 PRK14323 glmM phosphoglucosami 55.0 8.7 0.00019 40.9 2.6 33 2-34 19-55 (440)
83 PRK14319 glmM phosphoglucosami 54.9 13 0.00029 39.3 4.0 60 2-66 16-78 (430)
84 PRK02261 methylaspartate mutas 54.8 80 0.0017 27.8 8.3 56 48-109 3-61 (137)
85 cd05800 PGM_like2 This PGM-lik 53.1 18 0.00038 38.8 4.6 65 2-69 15-87 (461)
86 PRK08621 galactose-6-phosphate 52.4 41 0.00089 30.0 5.9 71 214-294 2-74 (142)
87 cd03364 TOPRIM_DnaG_primases T 51.7 45 0.00097 26.0 5.6 35 48-82 43-77 (79)
88 TIGR01123 ilvE_II branched-cha 51.2 90 0.002 31.5 9.2 72 269-360 168-248 (313)
89 PRK10887 glmM phosphoglucosami 50.9 15 0.00032 39.2 3.5 64 2-69 17-86 (443)
90 cd05799 PGM2 This CD includes 50.3 23 0.00051 38.2 5.0 65 2-69 19-93 (487)
91 PRK08622 galactose-6-phosphate 50.1 51 0.0011 30.3 6.3 66 214-287 2-69 (171)
92 TIGR01118 lacA galactose-6-pho 49.6 52 0.0011 29.3 6.1 71 213-293 1-73 (141)
93 PRK14324 glmM phosphoglucosami 48.8 12 0.00026 39.9 2.4 64 2-69 16-86 (446)
94 TIGR01455 glmM phosphoglucosam 48.4 19 0.00041 38.3 3.9 64 2-69 14-85 (443)
95 PF13662 Toprim_4: Toprim doma 48.1 44 0.00096 26.2 5.1 73 5-81 7-79 (81)
96 PRK05571 ribose-5-phosphate is 47.9 54 0.0012 29.5 6.1 68 214-288 2-71 (148)
97 COG1109 {ManB} Phosphomannomut 47.9 14 0.00031 39.6 2.8 33 2-34 22-57 (464)
98 TIGR02370 pyl_corrinoid methyl 47.0 1E+02 0.0022 28.9 8.2 61 48-114 84-147 (197)
99 cd02069 methionine_synthase_B1 46.3 1E+02 0.0023 29.3 8.2 60 48-110 88-147 (213)
100 PRK14315 glmM phosphoglucosami 45.9 17 0.00038 38.7 3.1 32 3-34 20-55 (448)
101 PRK14314 glmM phosphoglucosami 45.8 17 0.00038 38.7 3.1 63 3-69 20-89 (450)
102 PRK12613 galactose-6-phosphate 44.8 63 0.0014 28.8 5.9 69 214-293 2-72 (141)
103 PLN02371 phosphoglucosamine mu 44.0 16 0.00035 40.5 2.5 42 2-43 87-140 (583)
104 TIGR00640 acid_CoA_mut_C methy 43.9 61 0.0013 28.4 5.7 45 54-103 11-55 (132)
105 cd05801 PGM_like3 This bacteri 42.8 37 0.00081 37.0 5.1 66 2-69 36-109 (522)
106 cd02072 Glm_B12_BD B12 binding 42.6 67 0.0015 28.1 5.7 50 53-109 7-57 (128)
107 TIGR01120 rpiB ribose 5-phosph 42.6 65 0.0014 28.8 5.7 63 215-287 2-68 (143)
108 PRK12615 galactose-6-phosphate 42.4 79 0.0017 29.1 6.3 66 214-287 2-69 (171)
109 TIGR01119 lacB galactose-6-pho 42.0 73 0.0016 29.3 6.0 66 214-287 2-69 (171)
110 PTZ00215 ribose 5-phosphate is 42.0 86 0.0019 28.3 6.4 67 213-287 3-73 (151)
111 PRK14320 glmM phosphoglucosami 41.9 21 0.00046 38.0 3.0 33 2-34 18-54 (443)
112 TIGR02133 RPI_actino ribose 5- 41.4 1.1E+02 0.0025 27.4 7.1 76 213-295 1-78 (148)
113 COG2185 Sbm Methylmalonyl-CoA 41.4 88 0.0019 27.9 6.3 41 46-92 10-53 (143)
114 cd02071 MM_CoA_mut_B12_BD meth 40.6 1.5E+02 0.0033 25.2 7.7 44 55-103 9-52 (122)
115 PF02502 LacAB_rpiB: Ribose/Ga 39.2 41 0.00088 29.9 3.9 66 214-287 1-68 (140)
116 PRK04017 hypothetical protein; 39.2 1.1E+02 0.0024 26.9 6.5 34 47-80 64-97 (132)
117 PF11576 DUF3236: Protein of u 37.0 50 0.0011 29.3 3.9 82 213-301 36-123 (154)
118 TIGR01501 MthylAspMutase methy 36.8 92 0.002 27.5 5.7 50 53-109 9-59 (134)
119 PRK04870 histidinol-phosphate 34.9 4.9E+02 0.011 26.2 12.5 112 5-142 66-179 (356)
120 cd02070 corrinoid_protein_B12- 34.7 1.9E+02 0.0041 27.1 7.9 57 48-110 82-141 (201)
121 PRK14719 bifunctional RNAse/5- 34.7 63 0.0014 33.5 5.0 56 18-79 42-98 (360)
122 cd01561 CBS_like CBS_like: Thi 34.2 3.8E+02 0.0083 26.4 10.5 64 11-83 41-106 (291)
123 TIGR00689 rpiB_lacA_lacB sugar 34.2 97 0.0021 27.7 5.5 53 227-287 15-67 (144)
124 PF04028 DUF374: Domain of unk 33.6 1.8E+02 0.0039 22.8 6.3 59 211-284 10-68 (74)
125 PF10678 DUF2492: Protein of u 31.9 1.6E+02 0.0035 23.4 5.7 48 392-443 8-59 (78)
126 PF00070 Pyr_redox: Pyridine n 31.0 1.7E+02 0.0036 22.6 5.9 55 23-81 2-59 (80)
127 COG0698 RpiB Ribose 5-phosphat 30.6 1.6E+02 0.0034 26.6 6.1 65 213-287 1-70 (151)
128 TIGR01132 pgm phosphoglucomuta 30.4 30 0.00066 37.9 2.0 66 2-69 54-127 (543)
129 TIGR03853 matur_matur probable 30.1 1.9E+02 0.0041 23.0 5.7 48 392-443 6-57 (77)
130 cd02067 B12-binding B12 bindin 29.9 2.9E+02 0.0062 23.1 7.7 51 55-111 9-59 (119)
131 PRK08868 flagellar protein Fla 28.7 1.5E+02 0.0032 26.6 5.6 49 263-311 76-130 (144)
132 cd01535 4RHOD_Repeat_4 Member 28.2 1.5E+02 0.0033 26.2 5.8 43 36-82 37-80 (145)
133 PTZ00150 phosphoglucomutase-2- 27.7 1E+02 0.0022 34.1 5.6 47 20-69 88-137 (584)
134 PF13362 Toprim_3: Toprim doma 27.6 2.6E+02 0.0056 22.4 6.7 60 17-82 16-77 (96)
135 COG4373 Mu-like prophage FluMu 27.5 1.2E+02 0.0025 31.2 5.3 16 19-34 10-25 (509)
136 PRK13398 3-deoxy-7-phosphohept 27.1 1.1E+02 0.0025 30.2 5.2 91 36-135 44-147 (266)
137 COG0191 Fba Fructose/tagatose 27.1 2.4E+02 0.0051 28.3 7.3 83 6-121 29-114 (286)
138 PRK07366 succinyldiaminopimela 26.6 7.1E+02 0.015 25.5 11.9 116 5-146 71-195 (388)
139 cd03084 phosphohexomutase The 26.3 5.4E+02 0.012 26.2 10.4 78 48-137 112-202 (355)
140 cd03129 GAT1_Peptidase_E_like 26.3 3.4E+02 0.0073 25.4 8.2 84 24-110 3-88 (210)
141 COG0794 GutQ Predicted sugar p 25.8 1.3E+02 0.0028 28.6 4.9 22 61-82 50-71 (202)
142 PRK08673 3-deoxy-7-phosphohept 25.7 1.3E+02 0.0029 30.8 5.5 41 211-253 261-307 (335)
143 PRK11921 metallo-beta-lactamas 25.3 2.5E+02 0.0055 29.2 7.8 45 37-82 237-284 (394)
144 PF12456 hSac2: Inositol phosp 25.3 47 0.001 28.4 1.9 20 478-497 33-55 (115)
145 smart00493 TOPRIM topoisomeras 25.2 1.3E+02 0.0028 22.8 4.3 38 39-76 38-75 (76)
146 PRK03692 putative UDP-N-acetyl 25.0 2.2E+02 0.0047 27.8 6.7 103 5-114 21-139 (243)
147 TIGR03385 CoA_CoA_reduc CoA-di 24.4 2.3E+02 0.0049 29.7 7.3 26 387-412 385-410 (427)
148 PRK13396 3-deoxy-7-phosphohept 24.3 1.4E+02 0.003 30.9 5.3 115 23-144 93-231 (352)
149 PLN02204 diacylglycerol kinase 24.0 2.7E+02 0.0058 31.0 7.7 82 184-287 141-230 (601)
150 COG1979 Uncharacterized oxidor 23.9 2.5E+02 0.0054 28.8 6.8 63 212-284 29-94 (384)
151 TIGR01421 gluta_reduc_1 glutat 23.8 1.8E+02 0.0039 30.9 6.4 27 386-412 411-437 (450)
152 COG4019 Uncharacterized protei 23.5 3.1E+02 0.0068 23.9 6.4 83 213-301 37-124 (156)
153 cd00401 AdoHcyase S-adenosyl-L 23.3 7.6E+02 0.016 26.2 10.7 97 7-114 188-292 (413)
154 PRK09271 flavodoxin; Provision 23.2 1.4E+02 0.003 26.8 4.6 33 50-82 2-35 (160)
155 COG1454 EutG Alcohol dehydroge 22.8 2.2E+02 0.0047 29.8 6.5 66 212-285 31-96 (377)
156 PRK07324 transaminase; Validat 22.7 7.6E+02 0.016 25.2 10.7 116 5-147 65-184 (373)
157 TIGR01391 dnaG DNA primase, ca 22.7 2.6E+02 0.0056 29.6 7.2 72 4-82 263-334 (415)
158 PRK06836 aspartate aminotransf 22.6 8.4E+02 0.018 25.0 11.1 115 6-146 77-198 (394)
159 COG0299 PurN Folate-dependent 22.6 5.3E+02 0.011 24.4 8.3 75 8-88 14-89 (200)
160 PLN03026 histidinol-phosphate 22.5 8E+02 0.017 25.1 10.9 110 5-141 89-200 (380)
161 PRK06290 aspartate aminotransf 22.3 8.9E+02 0.019 25.2 11.3 116 5-146 84-209 (410)
162 cd03466 Nitrogenase_NifN_2 Nit 22.3 7.4E+02 0.016 26.1 10.7 69 4-82 261-329 (429)
163 PRK08452 flagellar protein Fla 21.9 2.5E+02 0.0055 24.4 5.7 47 265-311 60-112 (124)
164 COG1948 MUS81 ERCC4-type nucle 21.5 2.9E+02 0.0063 27.1 6.6 70 4-96 75-152 (254)
165 PF03646 FlaG: FlaG protein; 21.3 1.3E+02 0.0027 25.1 3.7 49 263-311 42-96 (107)
166 COG0860 AmiC N-acetylmuramoyl- 21.3 2.7E+02 0.0059 26.9 6.5 64 211-287 41-123 (231)
167 TIGR01114 mtrH N5-methyltetrah 21.2 1.5E+02 0.0032 30.0 4.6 78 41-126 141-240 (314)
168 COG1732 OpuBC Periplasmic glyc 21.1 2.2E+02 0.0048 28.7 5.9 55 47-103 31-85 (300)
169 PRK05452 anaerobic nitric oxid 20.8 3.6E+02 0.0078 29.1 8.0 45 37-82 241-288 (479)
170 PF00258 Flavodoxin_1: Flavodo 20.5 1.7E+02 0.0037 25.2 4.6 24 59-82 8-31 (143)
171 PF00582 Usp: Universal stress 20.5 1.3E+02 0.0028 24.8 3.8 43 49-94 3-45 (140)
172 PRK08361 aspartate aminotransf 20.5 9.2E+02 0.02 24.7 10.9 117 4-146 72-196 (391)
173 COG5012 Predicted cobalamin bi 20.5 3.9E+02 0.0085 25.7 7.1 51 49-101 105-155 (227)
174 COG3640 CooC CO dehydrogenase 20.4 2.1E+02 0.0045 28.0 5.3 58 213-272 1-64 (255)
175 PF01520 Amidase_3: N-acetylmu 20.0 4.9E+02 0.011 23.2 7.7 80 62-145 27-112 (175)
176 PF02007 MtrH: Tetrahydrometha 20.0 3.4E+02 0.0074 27.3 6.8 75 182-285 77-153 (296)
No 1
>cd03085 PGM1 Phosphoglucomutase 1 (PGM1) catalyzes the bidirectional interconversion of glucose-1-phosphate (G-1-P) and glucose-6-phosphate (G-6-P) via a glucose 1,6-diphosphate intermediate, an important metabolic step in prokaryotes and eukaryotes. In one direction, G-1-P produced from sucrose catabolism is converted to G-6-P, the first intermediate in glycolysis. In the other direction, conversion of G-6-P to G-1-P generates a substrate for synthesis of UDP-glucose which is required for synthesis of a variety of cellular constituents including cell wall polymers and glycoproteins. The PGM1 family also includes a non-enzymatic PGM-related protein (PGM-RP) thought to play a structural role in eukaryotes, as well as pp63/parafusin, a phosphoglycoprotein that plays an important role in calcium-regulated exocytosis in ciliated protozoans. PGM1 belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl t
Probab=100.00 E-value=3.4e-82 Score=680.05 Aligned_cols=434 Identities=61% Similarity=1.016 Sum_probs=354.3
Q ss_pred ceEEEeecCCcchHHHHHHHHHHHHHCCCeEEEeCCCcccchhHHHHHHHHcCCccceEEcCCCCCCCCCCCceeEEEcC
Q psy5979 49 SVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQVTGGIVLTASHNPGGPDNDFGIKFNTS 128 (499)
Q Consensus 49 ~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~g~~pTP~~~fav~~~~~~gGI~ITaSHNP~~~~~~nGiK~~~~ 128 (499)
++|+||||+|.+|++|+++++++|+++|++|+++.+.|.+|||+++|++++++|+|||||||||||+.|++||||||+++
T Consensus 50 ~~VvVG~D~R~~S~~~a~~~a~~L~~~G~~V~~~~~~G~~pTP~l~fav~~~~a~gGImITASHNP~~~~eyNGiK~~~~ 129 (548)
T cd03085 50 ATLVVGGDGRYYNKEAIQIIIKIAAANGVGKVVVGQNGLLSTPAVSAVIRKRKATGGIILTASHNPGGPEGDFGIKYNTS 129 (548)
T ss_pred CeEEEEECCCcChHHHHHHHHHHHHHCCCeEEEeCCCCccCchHHHHHHHhcCCCeEEEEecCCCCCCCCcCCcEEEecC
Confidence 36999999999999999999999999999999984337999999999999999999999999999954458999999999
Q ss_pred CCCCCChhHHHHHHHHHHhhhccCcCCCcccccccccCccccccCCcceEEEeCcHHHHHHHHHhhcCchhHHhhhcCCC
Q psy5979 129 NGGPAPDAVTENIYKITTQIKTYSIVPDLKVDITSIGSSSYEVDGAQFQVDVIDSVEVYLQLMKEIFDFPKLQSLIKGSS 208 (499)
Q Consensus 129 ~G~~~~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~d~~~~Y~~~l~~~i~~~~i~~~~~~~~ 208 (499)
+|.+++++.+++|++.+..++........+..+..+|.+.+. .........+..+.|++.+++.++.+.|++..
T Consensus 130 ~G~~i~~~~~~~I~~~i~~ie~~~~~~~~~~~~~~~g~i~~~--~~~~~~~~~d~~~~Yi~~l~~~v~~~~i~~~~---- 203 (548)
T cd03085 130 NGGPAPESVTDKIYEITKKITEYKIADDPDVDLSKIGVTKFG--GKPFTVEVIDSVEDYVELMKEIFDFDAIKKLL---- 203 (548)
T ss_pred CCCcCCcHHHHHHHHHHHhccccccccccccChhhcCceeec--ccCCceEEecCHHHHHHHHHhhhCHHHHhhhc----
Confidence 999999999888876543322110000000111223321110 00011233467899999999988876565310
Q ss_pred CCCCcEEEEcCCCCCChHHHHHHHHH-hcCCCcceeeecccCCCCCCCCCCCCcccHHHHHHHHHhCCCcEEEeeCCCCC
Q psy5979 209 GRPPFKLLINAMHGVTGPYVKKIFLE-ELGAQPDNAVNTTPLPDFGGHHPDPNLTYAADLVQAMQAGDFDLGAAFDGDGD 287 (499)
Q Consensus 209 ~~~~lkVvvD~~~G~~~~~~~~il~~-~lG~~~~~~v~~~~d~~F~~~~p~P~~~~l~~l~~~v~~~~adlgia~D~DgD 287 (499)
..+++|||+||+||+++.+++++| + +|||+++..+|+.|||+||++.|+|+++++.+|.+.|++.+||+||++|||||
T Consensus 204 ~~~~lkVVvD~~nGag~~~~~~lL-~~~LG~~~v~~i~~~pDg~Fp~~~P~P~~~~l~~L~~~V~~~~ADlGia~DgDaD 282 (548)
T cd03085 204 SRKGFKVRFDAMHGVTGPYAKKIF-VEELGAPESSVVNCTPLPDFGGGHPDPNLTYAKDLVELMKSGEPDFGAASDGDGD 282 (548)
T ss_pred ccCCCEEEEeCCcchhHHHHHHHH-HHhcCCCceEEEeCeeCCCCCCCCCCCcHHHHHHHHHHHhccCCCEEEEECCCCC
Confidence 015899999999999999999999 8 79998743699999999999999999999999999999999999999999999
Q ss_pred eeEEEccCceEeCCCcHHHHHHHHHhcCchhhhcCccceeeeccchHHHHHHHHHCCCcEEEeecchhHHhhhhhccCce
Q psy5979 288 RNMVLGKKAFFVNPSDSLAVLAAHLDSIPYFKKTGVKGYARSMPTGAAVDRVAKANNKELFEVPTGWKYFGNLMDAGRLS 367 (499)
Q Consensus 288 Rl~vvd~~G~~l~~d~~~~lla~~ll~~~~~~~~~~~~vv~~~~ss~~l~~ia~~~g~~v~~t~tG~k~i~~~~~~~~~~ 367 (499)
|++++|+ |+++.+++++++++.++++.+.++.++...||.|++||++++++|+++|+++++||||||||.++|.+.+++
T Consensus 283 Rl~vvd~-G~~i~~d~~lall~~~ll~~~~~~~~~~~~VV~tv~sS~~le~ia~~~G~~v~~t~vG~k~I~~~m~~~~~~ 361 (548)
T cd03085 283 RNMILGK-GFFVTPSDSVAVIAANAKLIPYFYKGGLKGVARSMPTSGALDRVAKKLGIPLFETPTGWKFFGNLMDAGKLS 361 (548)
T ss_pred ceEEEec-CEEecCCHHHHHHHHHHHHhhhhhhcCCcEEEEeCccHHHHHHHHHHcCCcEEEcCchHHHHHHHHhcCCce
Confidence 9999999 999999999999999887421111222236999999999999999999999999999999999999998899
Q ss_pred EEEEecCCCCCCCccCCchHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCceEeeeccccCCchhHHHHHHHHHhhcCCC
Q psy5979 368 LCGEESFGTGSDHIREKDGIWAVLAWLSVVEHTGKPVEEILKSHWKQYGRNYFTRYDYENCSAAPCNQMMDELEKKVSAP 447 (499)
Q Consensus 368 ~g~Eesgg~~~~~~~~~Dgi~a~l~lle~la~~~~~L~ell~~lp~~~g~~~~~~~~~~~~~~~~k~~vm~~l~~~~~~~ 447 (499)
||||||||+++.+.+++|||++++++||+|+.+++||++++++||++||+++|.+.+...|+|+.|+++|++|++..+.+
T Consensus 362 ~GgEeSgg~~~~~~~~kDGi~aal~llella~~g~tLsell~~i~~~~G~~~~~~~~~~~~~~~~k~~im~~l~~~~~~~ 441 (548)
T cd03085 362 LCGEESFGTGSDHIREKDGLWAVLAWLSILAHRNVSVEDIVKEHWQKYGRNFYTRYDYEEVDSEAANKMMDHLRALVSDL 441 (548)
T ss_pred EEEeccCCccCCCccCCcHHHHHHHHHHHHHHHCcCHHHHHHHHHHHhCcceeecccccCCCHHHHHHHHHHHHhccccC
Confidence 99999999878899999999999999999999999999999999999999888888877799999999999998642221
Q ss_pred --C----cccccccC-CCCcce----ecccCCCeEEEEeeCCeEEEEeecCCcc
Q psy5979 448 --E----FKGVTLSA-EGRSGS----WWRQEKQGVRSAISQTGLVHIQIIRNRQ 490 (499)
Q Consensus 448 --~----~~g~~~~~-~~~~~~----~~v~~iDGik~~~~d~~Wvlir~s~~~~ 490 (499)
. +.|.++.. .+-.+. ..++..||+|+.|+||+|++||||++.|
T Consensus 442 ~~~~~~~~~~~~v~~~~d~~~~~~~~~~~~~~dglk~~~~~g~wi~iRpSGTE~ 495 (548)
T cd03085 442 PGVGKSGDKGYKVAKADDFSYTDPVDGSVSKKQGLRIIFEDGSRIIFRLSGTGS 495 (548)
T ss_pred ccccccccCCceEEEEecceeccCCCCCcChhceEEEEECCCeEEEEECCCCCC
Confidence 2 45544431 111111 0267899999999999999999999994
No 2
>cd05800 PGM_like2 This PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily and is found in both archaea and bacteria. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four structural domains (subdomains) with a centrally located active site formed by four loops, one from each subdomain. All four subdomains are included in this alignment model.
Probab=100.00 E-value=6.9e-82 Score=670.67 Aligned_cols=419 Identities=27% Similarity=0.413 Sum_probs=365.7
Q ss_pred CcccccchhhHHHHHhhC-CCceEEEeecCCcchHHHHHHHHHHHHHCCCeEEEeCCCcccchhHHHHHHHHcCCccceE
Q psy5979 29 DGRYFGDVAVDKIIKISG-IRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQVTGGIV 107 (499)
Q Consensus 29 ~~~~~~~~a~~~~~~~~~-~~~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~g~~pTP~~~fav~~~~~~gGI~ 107 (499)
+-.+-.|.|||+++++.+ .+++|+||||+|.+|++|++++++||+++|++|+++ .|.+|||+++|++++++|+||||
T Consensus 19 ~~~~~lg~a~~~~l~~~~~~~~~Vvvg~D~R~ss~~l~~a~~~gL~s~G~~V~~~--~g~~pTP~~~~a~~~~~~~gGI~ 96 (461)
T cd05800 19 ENVRRVAQAIADYLKEEGGGGRGVVVGYDTRFLSEEFARAVAEVLAANGIDVYLS--DRPVPTPAVSWAVKKLGAAGGVM 96 (461)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCcCcHHHHHHHHHHHHHCCCEEEEc--CCCCCchHHHHHHHHhCCCeeEE
Confidence 444556889999998542 357899999999999999999999999999999998 36999999999999999999999
Q ss_pred EcCCCCCCCCCCCceeEEEcCCCCCCChhHHHHHHHHHHhhhccCcCCCcccccccccCccccccCCcceEEEeCcHHHH
Q psy5979 108 LTASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITTQIKTYSIVPDLKVDITSIGSSSYEVDGAQFQVDVIDSVEVY 187 (499)
Q Consensus 108 ITaSHNP~~~~~~nGiK~~~~~G~~~~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~d~~~~Y 187 (499)
||||||| ++||||||++++|.+++++.+++||+.+.+ +.+.++ ....+|. +...+..+.|
T Consensus 97 ITaSHnp---~~~ngiK~~~~~G~~i~~~~~~~ie~~~~~-~~~~~~-----~~~~~g~-----------i~~~~~~~~Y 156 (461)
T cd05800 97 ITASHNP---PEYNGVKVKPAFGGSALPEITAAIEARLAS-GEPPGL-----EARAEGL-----------IETIDPKPDY 156 (461)
T ss_pred EccCCCC---cccCeEEEeCCCCCcCChHHHHHHHHHHhh-cccccc-----ccccCCc-----------eeecCCHHHH
Confidence 9999999 899999999999999999999999998775 444321 1122332 3444778999
Q ss_pred HHHHHhhcCchhHHhhhcCCCCCCCcEEEEcCCCCCChHHHHHHHHHhcCCCcceeeecccCCCCCCCCCCCCcccHHHH
Q psy5979 188 LQLMKEIFDFPKLQSLIKGSSGRPPFKLLINAMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDPNLTYAADL 267 (499)
Q Consensus 188 ~~~l~~~i~~~~i~~~~~~~~~~~~lkVvvD~~~G~~~~~~~~il~~~lG~~~~~~v~~~~d~~F~~~~p~P~~~~l~~l 267 (499)
++++.+.++.+.++. +++|||+||+||+++.+++++| ++|||+++ .+|+.|||+||++.|+|.++++.++
T Consensus 157 ~~~l~~~~~~~~i~~--------~~~kivvd~~~G~~~~~~~~il-~~lg~~v~-~~~~~~dg~F~~~~p~p~~~~l~~l 226 (461)
T cd05800 157 LEALRSLVDLEAIRE--------AGLKVVVDPMYGAGAGYLEELL-RGAGVDVE-EIRAERDPLFGGIPPEPIEKNLGEL 226 (461)
T ss_pred HHHHHHHhChhhhhc--------CCceEEEeCCCCCcHHHHHHHH-HHcCCCEE-EeeCCcCCCCCCCCCCCCHHHHHHH
Confidence 999999988666653 6899999999999999999999 99999987 6999999999999999999999999
Q ss_pred HHHHHhCCCcEEEeeCCCCCeeEEEccCceEeCCCcHHHHHHHHHhcCchhhhcCccceeeeccchHHHHHHHHHCCCcE
Q psy5979 268 VQAMQAGDFDLGAAFDGDGDRNMVLGKKAFFVNPSDSLAVLAAHLDSIPYFKKTGVKGYARSMPTGAAVDRVAKANNKEL 347 (499)
Q Consensus 268 ~~~v~~~~adlgia~D~DgDRl~vvd~~G~~l~~d~~~~lla~~ll~~~~~~~~~~~~vv~~~~ss~~l~~ia~~~g~~v 347 (499)
.+.+++.+||+|+++||||||++++|++|+++++|++++|+++++++. ..+...||.|+.||++++++|+++|+++
T Consensus 227 ~~~v~~~~ad~Gia~D~DgDR~~vvd~~G~~l~~d~~~al~a~~ll~~----~~~~~~vv~~v~ss~~~~~~a~~~g~~v 302 (461)
T cd05800 227 AEAVKEGGADLGLATDGDADRIGAVDEKGNFLDPNQILALLLDYLLEN----KGLRGPVVKTVSTTHLIDRIAEKHGLPV 302 (461)
T ss_pred HHHHHhcCCCEEEEECCCCCeEEEEeCCCceeCHHHHHHHHHHHHHHc----CCCCCcEEEEcchHHHHHHHHHHhCCee
Confidence 999999999999999999999999999999999999999999999752 1122369999999999999999999999
Q ss_pred EEeecchhHHhhhhhccCceEEEEecCCC-CCCCccCCchHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCceEeeeccc
Q psy5979 348 FEVPTGWKYFGNLMDAGRLSLCGEESFGT-GSDHIREKDGIWAVLAWLSVVEHTGKPVEEILKSHWKQYGRNYFTRYDYE 426 (499)
Q Consensus 348 ~~t~tG~k~i~~~~~~~~~~~g~Eesgg~-~~~~~~~~Dgi~a~l~lle~la~~~~~L~ell~~lp~~~g~~~~~~~~~~ 426 (499)
++||||+++++++|.+.+++||+|+|||+ +++|.+++|||++++++||+|+.++++|+++++++|++||++++.+.+.
T Consensus 303 ~~t~~G~~~v~~~~~~~~~~~g~E~sg~~~~~~~~~~~Dgi~a~l~ile~la~~~~~L~~l~~~l~~~~g~~~~~~~~i- 381 (461)
T cd05800 303 YETPVGFKYIAEKMLEEDVLIGGEESGGLGIRGHIPERDGILAGLLLLEAVAKTGKPLSELVAELEEEYGPSYYDRIDL- 381 (461)
T ss_pred eeCCCCHHHHHHHHhhCCeEEEEcCcCceeCCCCCCCchHHHHHHHHHHHHHhhCCCHHHHHHHHHHHhCCCceeecCe-
Confidence 99999999999999998999999999997 7899999999999999999999999999999999999999877666665
Q ss_pred cCCchhHHHHHHHHHhhcCCCCcccccccCCCCcceecccCCCeEEEEeeCCeEEEEeecCCccccc
Q psy5979 427 NCSAAPCNQMMDELEKKVSAPEFKGVTLSAEGRSGSWWRQEKQGVRSAISQTGLVHIQIIRNRQFRR 493 (499)
Q Consensus 427 ~~~~~~k~~vm~~l~~~~~~~~~~g~~~~~~~~~~~~~v~~iDGik~~~~d~~Wvlir~s~~~~~~~ 493 (499)
.|+|+.++++|++|.+.... ...|. ...+++++||+|+.|+|++|+|||||++.|-=|
T Consensus 382 ~~~~~~~~~v~~~l~~~~~~-~~~~~--------~~~~~~~~dGvrv~~~d~~wvlvRpS~tep~ir 439 (461)
T cd05800 382 RLTPAQKEAILEKLKNEPPL-SIAGG--------KVDEVNTIDGVKLVLEDGSWLLIRPSGTEPLLR 439 (461)
T ss_pred ecCHHHHHHHHHHHhccCch-hhCCc--------eeEEEEecCeEEEEEcCCcEEEEEcCCCCceEE
Confidence 69999999999999876432 11111 013688999999999887899999999998544
No 3
>cd05803 PGM_like4 This PGM-like (phosphoglucomutase-like) domain is located C-terminal to a mannose-1-phosphate guanyltransferase domain in a protein of unknown function that is found in both prokaryotes and eukaryotes. This domain belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=100.00 E-value=6.9e-82 Score=667.27 Aligned_cols=405 Identities=21% Similarity=0.286 Sum_probs=354.9
Q ss_pred ccccchhhHHHHHhhCCCceEEEeecCCcchHHHHHHHHHHHHHCCCeEEEeCCCcccchhHHHHHHHHcCCccceEEcC
Q psy5979 31 RYFGDVAVDKIIKISGIRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQVTGGIVLTA 110 (499)
Q Consensus 31 ~~~~~~a~~~~~~~~~~~~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~g~~pTP~~~fav~~~~~~gGI~ITa 110 (499)
.+-.|.|||+++.+.+.+++|+||||+|.+|++|+++++++|+++|++|+++ |.+|||+++|++++++|++||||||
T Consensus 20 v~~l~~a~~~~l~~~~~~~~Vvvg~D~R~~s~~l~~a~~~gL~~~G~~V~~~---g~~pTP~~~~a~~~~~~~~GI~ITa 96 (445)
T cd05803 20 ITRYVAAFATWQPERTKGGKIVVGRDGRPSGPMLEKIVIGALLACGCDVIDL---GIAPTPTVQVLVRQSQASGGIIITA 96 (445)
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEEeCCCCCHHHHHHHHHHHHHHCCCeEEEe---CCCCchHHHHHHHHhCCCeeEEEEe
Confidence 3345788999998666567899999999999999999999999999999998 8999999999999999999999999
Q ss_pred CCCCCCCCCCceeEEEcCCCCCCChhHHHHHHHHHHhhhccCcCCCcccccccccCccccccCCcceEEEe-CcHHHHHH
Q psy5979 111 SHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITTQIKTYSIVPDLKVDITSIGSSSYEVDGAQFQVDVI-DSVEVYLQ 189 (499)
Q Consensus 111 SHNP~~~~~~nGiK~~~~~G~~~~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~-d~~~~Y~~ 189 (499)
|||| ++||||||++++|.+++++.+++|++.+.+ +++.++ .++.+|+ +... +..+.|++
T Consensus 97 Shnp---~~~nGiK~~~~~G~~~~~~~~~~i~~~~~~-~~~~~~-----~~~~~g~-----------~~~~~~~~~~Y~~ 156 (445)
T cd05803 97 SHNP---PQWNGLKFIGPDGEFLTPDEGEEVLSCAEA-GSAQKA-----GYDQLGE-----------VTFSEDAIAEHID 156 (445)
T ss_pred cCCC---cccccEEEECCCCCcCCHHHHHHHHHHHhc-cccccc-----ccccCcc-----------eeccCchHHHHHH
Confidence 9999 899999999999999999999999987765 444422 2233333 2332 56788999
Q ss_pred HHHhhcCchhHHhhhcCCCCCCCcEEEEcCCCCCChHHHHHHHHHhcCCCcceeeecccCCCCCCCCCCCCcccHHHHHH
Q psy5979 190 LMKEIFDFPKLQSLIKGSSGRPPFKLLINAMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDPNLTYAADLVQ 269 (499)
Q Consensus 190 ~l~~~i~~~~i~~~~~~~~~~~~lkVvvD~~~G~~~~~~~~il~~~lG~~~~~~v~~~~d~~F~~~~p~P~~~~l~~l~~ 269 (499)
.+.+.++.+.++. ..+++||++||+||+++.+++++| ++|||+++ .+|+.|||.|| +.|+|.++++..+.+
T Consensus 157 ~l~~~~~~~~~~~------~~~~lkVvvd~~~G~~~~~~~~ll-~~lg~~v~-~~~~~~d~~F~-~~p~p~~~~l~~l~~ 227 (445)
T cd05803 157 KVLALVDVDVIKI------RERNFKVAVDSVNGAGGLLIPRLL-EKLGCEVI-VLNCEPTGLFP-HTPEPLPENLTQLCA 227 (445)
T ss_pred HHHhhcccchhhh------ccCCCEEEEECCCCcHHHHHHHHH-HHcCCEEE-EeCCcCCCCCC-CCCCCChHHHHHHHH
Confidence 9999887654431 015899999999999999999999 99999976 69999999998 799999999999999
Q ss_pred HHHhCCCcEEEeeCCCCCeeEEEccCceEeCCCcHHHHHHHHHhcCchhhhcCccceeeeccchHHHHHHHHHCCCcEEE
Q psy5979 270 AMQAGDFDLGAAFDGDGDRNMVLGKKAFFVNPSDSLAVLAAHLDSIPYFKKTGVKGYARSMPTGAAVDRVAKANNKELFE 349 (499)
Q Consensus 270 ~v~~~~adlgia~D~DgDRl~vvd~~G~~l~~d~~~~lla~~ll~~~~~~~~~~~~vv~~~~ss~~l~~ia~~~g~~v~~ 349 (499)
.+++.++|+|+++||||||++++|++|+++++|++++|+++++++. +..+ ..||.|++||.+++++|+++|+++++
T Consensus 228 ~v~~~~adlgi~~D~DgDR~~ivd~~G~~i~~d~~~al~a~~ll~~---~~~~-~~vv~~v~ss~~i~~ia~~~g~~v~~ 303 (445)
T cd05803 228 AVKESGADVGFAVDPDADRLALVDEDGRPIGEEYTLALAVDYVLKY---GGRK-GPVVVNLSTSRALEDIARKHGVPVFR 303 (445)
T ss_pred HHHhcCCCEEEeeCCCCceEEEECCCCCCcChHHHHHHHHHHHHHh---cCCC-CCEEEeccchHHHHHHHHHcCCEEEE
Confidence 9999999999999999999999999999999999999999999862 1222 35999999999999999999999999
Q ss_pred eecchhHHhhhhhccCceEEEEecCCC-CCCCccCCchHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCceEeeeccccC
Q psy5979 350 VPTGWKYFGNLMDAGRLSLCGEESFGT-GSDHIREKDGIWAVLAWLSVVEHTGKPVEEILKSHWKQYGRNYFTRYDYENC 428 (499)
Q Consensus 350 t~tG~k~i~~~~~~~~~~~g~Eesgg~-~~~~~~~~Dgi~a~l~lle~la~~~~~L~ell~~lp~~~g~~~~~~~~~~~~ 428 (499)
|||||+||+++|.+.+++||+|||||+ +++|.+++|||++++++||+|+.++++|+++++++|. +++.+. .+.|
T Consensus 304 t~vG~~~i~~~~~~~~~~~g~E~sg~~~~~~~~~~~Dgi~a~l~~le~la~~~~~L~~l~~~~~~----~~~~~~-~v~~ 378 (445)
T cd05803 304 SAVGEANVVEKMKEVDAVIGGEGNGGVILPDVHYGRDSLVGIALVLQLLAASGKPLSEIVDELPQ----YYISKT-KVTI 378 (445)
T ss_pred ecccHHHHHHHHHhcCCeEEEeccCCeecCCccccccHHHHHHHHHHHHHhcCCCHHHHHHhchh----hheeee-eeec
Confidence 999999999999999999999999997 7889999999999999999999999999999999986 244444 4579
Q ss_pred CchhHHHHHHHHHhhcCCCCcccccccCCCCcceecccCCCeEEEEeeCCeEEEEeecCCccccc
Q psy5979 429 SAAPCNQMMDELEKKVSAPEFKGVTLSAEGRSGSWWRQEKQGVRSAISQTGLVHIQIIRNRQFRR 493 (499)
Q Consensus 429 ~~~~k~~vm~~l~~~~~~~~~~g~~~~~~~~~~~~~v~~iDGik~~~~d~~Wvlir~s~~~~~~~ 493 (499)
+|++|+++|++|+++.+. .+++++||+|+.|+| ||+|||||++.|.=|
T Consensus 379 ~~~~~~~i~~~l~~~~~~----------------~~v~~~DGik~~~~~-~W~liRpS~teP~~r 426 (445)
T cd05803 379 AGEALERLLKKLEAYFKD----------------AEASTLDGLRLDSED-SWVHVRPSNTEPIVR 426 (445)
T ss_pred cHHhHHHHHHHHHHhccc----------------CCcccCceEEEecCC-eEEEEeccCCccEEE
Confidence 999999999999876532 378999999999986 899999999998644
No 4
>cd03089 PMM_PGM The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other membe
Probab=100.00 E-value=2.1e-81 Score=663.50 Aligned_cols=403 Identities=23% Similarity=0.307 Sum_probs=350.6
Q ss_pred CcccccchhhHHHHHhhCCCceEEEeecCCcchHHHHHHHHHHHHHCCCeEEEeCCCcccchhHHHHHHHHcCCccceEE
Q psy5979 29 DGRYFGDVAVDKIIKISGIRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQVTGGIVL 108 (499)
Q Consensus 29 ~~~~~~~~a~~~~~~~~~~~~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~g~~pTP~~~fav~~~~~~gGI~I 108 (499)
+...-.+.|||+++++++ +++|+||||+|.+|++|++++++||+++|++|+++ |.+|||+++|++++++|+|||||
T Consensus 18 ~~v~~l~~a~~~~l~~~~-~~~VvVg~D~R~~s~~~~~a~~~gL~s~G~~V~~~---g~~pTP~~~~~v~~~~a~gGI~I 93 (443)
T cd03089 18 EIAYAIGRAFGSWLLEKG-AKKVVVGRDGRLSSPELAAALIEGLLAAGCDVIDI---GLVPTPVLYFATFHLDADGGVMI 93 (443)
T ss_pred HHHHHHHHHHHHHHHhcC-CCeEEEEECCCCCHHHHHHHHHHHHHHcCCcEEEe---CCcchHHHHHHHhccCCCeEEEE
Confidence 334445789999997532 46899999999999999999999999999999998 89999999999999999999999
Q ss_pred cCCCCCCCCCCCceeEEEcCCCCCCChhHHHHHHHHHHhhhccCcCCCcccccccccCccccccCCcceEEEeCcHHHHH
Q psy5979 109 TASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITTQIKTYSIVPDLKVDITSIGSSSYEVDGAQFQVDVIDSVEVYL 188 (499)
Q Consensus 109 TaSHNP~~~~~~nGiK~~~~~G~~~~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~d~~~~Y~ 188 (499)
|||||| ++||||||+++ |.++.++.+++|++.+.+ +++.+ ...+|. +...+..+.|+
T Consensus 94 TASHNP---~~~nGiK~~~~-G~~~~~~~~~~Ie~~~~~-~~~~~-------~~~~g~-----------~~~~d~~~~Y~ 150 (443)
T cd03089 94 TASHNP---PEYNGFKIVIG-GGPLSGEDIQALRERAEK-GDFAA-------ATGRGS-----------VEKVDILPDYI 150 (443)
T ss_pred ecCCCC---cccCceEeccC-CCCCCHHHHHHHHHHHHh-ccccc-------cCCCCc-----------EEECCCHHHHH
Confidence 999999 89999999999 999999989999988765 33321 122232 44447889999
Q ss_pred HHHHhhcCchhHHhhhcCCCCCCCcEEEEcCCCCCChHHHHHHHHHhcCCCcceeeecccCCCCCCCCCCCC-cccHHHH
Q psy5979 189 QLMKEIFDFPKLQSLIKGSSGRPPFKLLINAMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDPN-LTYAADL 267 (499)
Q Consensus 189 ~~l~~~i~~~~i~~~~~~~~~~~~lkVvvD~~~G~~~~~~~~il~~~lG~~~~~~v~~~~d~~F~~~~p~P~-~~~l~~l 267 (499)
+.+++.++.+ .+++||++||+||+++.+++++| ++|||+++ .+|+.|||+||++.|+|+ ++++..+
T Consensus 151 ~~l~~~i~~~-----------~~~lkVvvd~~~G~~~~~~~~ll-~~lG~~v~-~i~~~~d~~F~~~~p~p~~~~~l~~l 217 (443)
T cd03089 151 DRLLSDIKLG-----------KRPLKVVVDAGNGAAGPIAPQLL-EALGCEVI-PLFCEPDGTFPNHHPDPTDPENLEDL 217 (443)
T ss_pred HHHHHhcccc-----------cCCCeEEEECCCCchHHHHHHHH-HHCCCEEE-EecCCCCCCCCCCCcCCCCHHHHHHH
Confidence 9999988642 14899999999999999999999 99999987 699999999999999996 6889999
Q ss_pred HHHHHhCCCcEEEeeCCCCCeeEEEccCceEeCCCcHHHHHHHHHhcCchhhhcCccceeeeccchHHHHHHHHHCCCcE
Q psy5979 268 VQAMQAGDFDLGAAFDGDGDRNMVLGKKAFFVNPSDSLAVLAAHLDSIPYFKKTGVKGYARSMPTGAAVDRVAKANNKEL 347 (499)
Q Consensus 268 ~~~v~~~~adlgia~D~DgDRl~vvd~~G~~l~~d~~~~lla~~ll~~~~~~~~~~~~vv~~~~ss~~l~~ia~~~g~~v 347 (499)
.+.+++.++|+||++||||||++++|++|+++++|++++|+++++++. .+...||.|++||.+++++|+++|+++
T Consensus 218 ~~~v~~~~adlgia~D~DaDR~~ivd~~G~~l~~d~~~~lla~~ll~~-----~~~~~vv~~v~ss~~~~~ia~~~g~~v 292 (443)
T cd03089 218 IAAVKENGADLGIAFDGDGDRLGVVDEKGEIIWGDRLLALFARDILKR-----NPGATIVYDVKCSRNLYDFIEEAGGKP 292 (443)
T ss_pred HHHHHHcCCCEEEEecCCcceeEEECCCCcEeCHHHHHHHHHHHHHHH-----CCCCeEEEecccchHHHHHHHHcCCeE
Confidence 999999999999999999999999999999999999999999999752 222369999999999999999999999
Q ss_pred EEeecchhHHhhhhhccCceEEEEecCCC-CCC-CccCCchHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCceEeeecc
Q psy5979 348 FEVPTGWKYFGNLMDAGRLSLCGEESFGT-GSD-HIREKDGIWAVLAWLSVVEHTGKPVEEILKSHWKQYGRNYFTRYDY 425 (499)
Q Consensus 348 ~~t~tG~k~i~~~~~~~~~~~g~Eesgg~-~~~-~~~~~Dgi~a~l~lle~la~~~~~L~ell~~lp~~~g~~~~~~~~~ 425 (499)
+|||||||||+++|.+.+++||||||||+ +++ |.+++||++++++++|+|+.++++|+|+++++|+ ++...+.+
T Consensus 293 ~~t~vG~k~v~~~m~~~~~~~ggE~sgg~~~~~~~~~~~Dgi~a~l~ile~la~~~~~Lsel~~~~p~---~~~~~~~~- 368 (443)
T cd03089 293 IMWKTGHSFIKAKMKETGALLAGEMSGHIFFKDRWYGFDDGIYAALRLLELLSKSGKTLSELLADLPK---YFSTPEIR- 368 (443)
T ss_pred EEecCcHHHHHHHHHHhCCcEEEeccceEEEcCCcCCCccHHHHHHHHHHHHHhcCCCHHHHHHhccc---cCCCCcee-
Confidence 99999999999999999999999999997 688 9999999999999999999999999999999886 11212222
Q ss_pred ccCCchhHHHHHHHHHhhcCCCCcccccccCCCCcceecccCCCeEEEEeeCCeEEEEeecCCcccccce
Q psy5979 426 ENCSAAPCNQMMDELEKKVSAPEFKGVTLSAEGRSGSWWRQEKQGVRSAISQTGLVHIQIIRNRQFRRHV 495 (499)
Q Consensus 426 ~~~~~~~k~~vm~~l~~~~~~~~~~g~~~~~~~~~~~~~v~~iDGik~~~~d~~Wvlir~s~~~~~~~~~ 495 (499)
+.|+|+.|+++|++|.++.... ..+++++||+|+.|+| ||+|||||++.|-=|..
T Consensus 369 ~~~~~~~k~~~~~~l~~~~~~~--------------~~~~~~~DGiki~~~~-~WvliRpSgtEP~iriy 423 (443)
T cd03089 369 IPVTEEDKFAVIERLKEHFEFP--------------GAEIIDIDGVRVDFED-GWGLVRASNTEPVLVLR 423 (443)
T ss_pred ccCCchhHHHHHHHHHHHhccc--------------cCCeeeecCEEEEECC-eeEEEeecCCCCEEEEE
Confidence 4699999999999998865431 0268999999999986 89999999999965544
No 5
>PRK14321 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=3.6e-80 Score=654.20 Aligned_cols=396 Identities=21% Similarity=0.252 Sum_probs=345.5
Q ss_pred cccchhhHHHHHhhCCCceEEEeecCCcchHHHHHHHHHHHHHCCCeEEEeCCCcccchhHHHHHHHHcCCccceEEcCC
Q psy5979 32 YFGDVAVDKIIKISGIRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQVTGGIVLTAS 111 (499)
Q Consensus 32 ~~~~~a~~~~~~~~~~~~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~g~~pTP~~~fav~~~~~~gGI~ITaS 111 (499)
+-.|.|||++++ . ++|+||||+|.+|++|++++++||+++|++|+++ |.+|||+++|++++++++||||||||
T Consensus 24 ~~lg~a~~~~l~---~-~~VvVg~D~R~~s~~l~~a~~~gL~s~G~~V~~~---g~~pTP~~~~av~~~~~~gGI~ITaS 96 (449)
T PRK14321 24 LKVGLALGTYLG---G-GKVVVGKDTRTSSEMLKNALISGLLSTGVDVIDI---GLAPTPLTGFAIKLYNADAGVTITAS 96 (449)
T ss_pred HHHHHHHHhhcc---C-CcEEEEeCCCCChHHHHHHHHHHHHHCCCeEEEe---CCcCCcHHHHHHHhcCCCeEEEEEeC
Confidence 334677777775 2 3799999999999999999999999999999998 99999999999999999999999999
Q ss_pred CCCCCCCCCceeEEEcCCCCCCChhHHHHHHHHHHhhhccCcCCCcccccccccCccccccCCcceEEEeCcHHHHHHHH
Q psy5979 112 HNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITTQIKTYSIVPDLKVDITSIGSSSYEVDGAQFQVDVIDSVEVYLQLM 191 (499)
Q Consensus 112 HNP~~~~~~nGiK~~~~~G~~~~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~d~~~~Y~~~l 191 (499)
||| ++||||||++++|.+++++.+++|++++.+ ++|+++ .++.+|. +...+..+.|++.|
T Consensus 97 HnP---~~~nGiK~~~~~G~~i~~~~~~~ie~~~~~-~~~~~~-----~~~~~g~-----------~~~~~~~~~Y~~~l 156 (449)
T PRK14321 97 HNP---PEYNGIKVWQRNGMAYTPEMENELERIIES-GNFKRV-----PWNEIGT-----------LRRADPKEEYIKAA 156 (449)
T ss_pred CCC---HHHCcEEEECCCCCcCCHHHHHHHHHHHhc-cccccc-----ccccCce-----------eeecccHHHHHHHH
Confidence 999 899999999999999999999999988765 555432 2333333 33446789999999
Q ss_pred HhhcCchhHHhhhcCCCCCCCcEEEEcCCCCCChHHHHHHHHHhcCCCcceeeecccCCCCCCCCCCCCcccHHHHHHHH
Q psy5979 192 KEIFDFPKLQSLIKGSSGRPPFKLLINAMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDPNLTYAADLVQAM 271 (499)
Q Consensus 192 ~~~i~~~~i~~~~~~~~~~~~lkVvvD~~~G~~~~~~~~il~~~lG~~~~~~v~~~~d~~F~~~~p~P~~~~l~~l~~~v 271 (499)
++.++.. +++|||+||+||+++.+++++| ++|||+++ .+|+.|||.|+ +.|+|+++++.++.+.+
T Consensus 157 ~~~~~~~------------~~~kVvvD~~~G~~~~~~~~il-~~lg~~v~-~i~~~~d~~f~-~~p~p~~~~l~~l~~~v 221 (449)
T PRK14321 157 LEMIKLE------------NSYTVVVDSGNGAGSILSPYLQ-RELGNKVI-SLNSHPSGFFV-RELEPNAKSLSMLAKTV 221 (449)
T ss_pred HHhcCcC------------CCCEEEEECCCchHHHHHHHHH-HHcCCEEE-EeCccCCCCCC-CCCCCchhhHHHHHHHH
Confidence 9988641 5899999999999999999999 99999987 69999999998 58999999999999999
Q ss_pred HhCCCcEEEeeCCCCCeeEEEccCceEeCCCcHHHHHHHHHhcCchhhhcCccceeeeccchHHHHHHHHHCCCcEEEee
Q psy5979 272 QAGDFDLGAAFDGDGDRNMVLGKKAFFVNPSDSLAVLAAHLDSIPYFKKTGVKGYARSMPTGAAVDRVAKANNKELFEVP 351 (499)
Q Consensus 272 ~~~~adlgia~D~DgDRl~vvd~~G~~l~~d~~~~lla~~ll~~~~~~~~~~~~vv~~~~ss~~l~~ia~~~g~~v~~t~ 351 (499)
++.+||+||++||||||++++|++|+++++|++++|+++++++. .+...||.|+.||++++++|+++|+++++||
T Consensus 222 ~~~~adlGia~DgD~DR~~vvd~~G~~~~~d~~~~l~a~~ll~~-----~~~~~vV~~v~ss~~i~~~a~~~g~~v~~t~ 296 (449)
T PRK14321 222 KVLKADVGIAHDGDADRIGVVDDQGNFVEYEVMLSLIAGYMLRK-----FGKGKIVTTVDAGFALDDYIRPLGGEVIRTR 296 (449)
T ss_pred HHCCCCEEEEecCCCceEEEECCCCCEeChHHHHHHHHHHHHHh-----CCCCcEEEeccccHHHHHHHHHcCCEEEEEe
Confidence 99999999999999999999999999999999999999999752 2224699999999999999999999999999
Q ss_pred cchhHHhhhhhccCceEEEEecCCC-CCCCccCCchHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCceEeeeccccCCc
Q psy5979 352 TGWKYFGNLMDAGRLSLCGEESFGT-GSDHIREKDGIWAVLAWLSVVEHTGKPVEEILKSHWKQYGRNYFTRYDYENCSA 430 (499)
Q Consensus 352 tG~k~i~~~~~~~~~~~g~Eesgg~-~~~~~~~~Dgi~a~l~lle~la~~~~~L~ell~~lp~~~g~~~~~~~~~~~~~~ 430 (499)
|||+||+++|.+.+++||||||||+ +++|.+++|||++++++||+|++++ +|+++++++|. +++.+.+ +.|+|
T Consensus 297 vG~~~i~~~m~~~~~~~ggE~sGg~~~~~~~~~~Dgi~a~~~ile~la~~~-~Ls~l~~~~~~----~~~~~~~-v~~~~ 370 (449)
T PRK14321 297 VGDVAVAEELAKHGGVFGGEPSGTWIIPQWNLTPDGIFAGALVLEMIDRLG-PISELAKEVPR----YVTLRAK-IPCPN 370 (449)
T ss_pred cChHHHHHHHHhhCCEEEecCCCCEEeCCcCCCCCHHHHHHHHHHHHHcCC-CHHHHHHhccc----ccccccc-ccCch
Confidence 9999999999999999999999997 7899999999999999999999998 99999987764 3445544 47999
Q ss_pred hhHHHHHHHHHhhcCCCCcccccccCCCCcceecccCCCeEEEEeeCCeEEEEeecCCccccc
Q psy5979 431 APCNQMMDELEKKVSAPEFKGVTLSAEGRSGSWWRQEKQGVRSAISQTGLVHIQIIRNRQFRR 493 (499)
Q Consensus 431 ~~k~~vm~~l~~~~~~~~~~g~~~~~~~~~~~~~v~~iDGik~~~~d~~Wvlir~s~~~~~~~ 493 (499)
+.|+++|++|.++... .+. ..+++++||+|+.++| ||+|||||++.|.=|
T Consensus 371 ~~k~~~~~~l~~~~~~-~~~-----------~~~v~~~DGvkv~~~~-~WvliRpS~TeP~~r 420 (449)
T PRK14321 371 EKKAKAMEIIAKEALK-NFD-----------YERLIDIDGIRIENDD-WWILFRPSGTEPIMR 420 (449)
T ss_pred hhHHHHHHHHHHHhhh-hcc-----------cCceeecceEEEecCC-cEEEEecCCCCceEE
Confidence 9999999998765532 110 1369999999999866 899999999998644
No 6
>cd05805 MPG1_transferase GTP-mannose-1-phosphate guanyltransferase (MPG1 transferase), also known as GDP-mannose pyrophosphorylase, is a bifunctional enzyme with both phosphomannose isomerase (PMI) activity and GDP-mannose phosphorylase (GMP) activity. The protein contains an N-terminal NTP transferase domain, an L-beta-H domain, and a C-terminal PGM-like domain that belongs to the alpha-D-phosphohexomutase superfamily. This subfamily is limited to bacteria and archaea. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this group appear to lack conserved residues necessary for metal binding and catalytic activity. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional
Probab=100.00 E-value=3.3e-80 Score=654.04 Aligned_cols=401 Identities=16% Similarity=0.163 Sum_probs=344.9
Q ss_pred CcccccchhhHHHHHhhCCCceEEEeecCCcchHHHHHHHHHHHHHCCCeEEEeCCCcccchhHHHHHHHHcCCccceEE
Q psy5979 29 DGRYFGDVAVDKIIKISGIRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQVTGGIVL 108 (499)
Q Consensus 29 ~~~~~~~~a~~~~~~~~~~~~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~g~~pTP~~~fav~~~~~~gGI~I 108 (499)
+-.+-.|-|||+++. .+++|+||||+|.+|++|++++++||+++|++|+++ |.+|||+++|+++++++++||||
T Consensus 18 ~~~~~lg~a~~~~l~---~~~~VvVG~D~R~ss~~~~~a~~~gL~s~G~~V~~~---g~~pTP~~~~av~~~~~~gGi~I 91 (441)
T cd05805 18 EFATRLGAAYGSTLP---PGSTVTVSRDASRASRMLKRALISGLLSTGVNVRDL---GALPLPVARYAIRFLGASGGIHV 91 (441)
T ss_pred HHHHHHHHHHhhcCC---CCCEEEEEcCCChhHHHHHHHHHHHHHhCCCeEEec---CCcCchHHHHHHHhcCCCeeEEE
Confidence 334444566777665 356799999999999999999999999999999998 89999999999999999999999
Q ss_pred cCCCCCCCCCCCceeEEEcCCCCCCChhHHHHHHHHHHhhhccCcCCCcccccccccCccccccCCcceEEEe-CcHHHH
Q psy5979 109 TASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITTQIKTYSIVPDLKVDITSIGSSSYEVDGAQFQVDVI-DSVEVY 187 (499)
Q Consensus 109 TaSHNP~~~~~~nGiK~~~~~G~~~~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~-d~~~~Y 187 (499)
|||||| ++||||||++++|.+++++.+++|++.+.+ +++.+. ..+.+|. +... +..+.|
T Consensus 92 TaSHnp---~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~-~~~~~~-----~~~~~g~-----------~~~~~~~~~~Y 151 (441)
T cd05805 92 RTSPDD---PDKVEIEFFDSRGLNISRAMERKIENAFFR-EDFRRA-----HVDEIGD-----------ITEPPDFVEYY 151 (441)
T ss_pred EeCCCC---ccceEEEEECCCCCcCCHHHHHHHHHHHhh-hhhccc-----cHhhcCc-----------cccchhHHHHH
Confidence 999999 899999999999999999999999987764 444311 1222333 2222 567889
Q ss_pred HHHHHhhcCchhHHhhhcCCCCCCCcEEEEcCCCCCChHHHHHHHHHhcCCCcceeeecccCCCCCCCCCCCCcccHHHH
Q psy5979 188 LQLMKEIFDFPKLQSLIKGSSGRPPFKLLINAMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDPNLTYAADL 267 (499)
Q Consensus 188 ~~~l~~~i~~~~i~~~~~~~~~~~~lkVvvD~~~G~~~~~~~~il~~~lG~~~~~~v~~~~d~~F~~~~p~P~~~~l~~l 267 (499)
++.+.+.++.+.|+. +++||++||+||+++.+++++| ++|||+++ .+|+++||+|+ +.|+|.++++..+
T Consensus 152 ~~~l~~~i~~~~i~~--------~~lkIvvd~~~G~~~~~~~~ll-~~lG~~v~-~i~~~~d~~~~-~~~~~~~~~l~~l 220 (441)
T cd05805 152 IRGLLRALDTSGLKK--------SGLKVVIDYAYGVAGIVLPGLL-SRLGCDVV-ILNARLDEDAP-RTDTERQRSLDRL 220 (441)
T ss_pred HHHHHHHhCHHHHhh--------cCCeEEEECCCchHHHHHHHHH-HHcCCEEE-EEecccCCccC-CCCccchhHHHHH
Confidence 999998888765653 6899999999999999999999 99999987 69999999853 4566667899999
Q ss_pred HHHHHhCCCcEEEeeCCCCCeeEEEccCceEeCCCcHHHHHHHHHhcCchhhhcCccceeeeccchHHHHHHHHHCCCcE
Q psy5979 268 VQAMQAGDFDLGAAFDGDGDRNMVLGKKAFFVNPSDSLAVLAAHLDSIPYFKKTGVKGYARSMPTGAAVDRVAKANNKEL 347 (499)
Q Consensus 268 ~~~v~~~~adlgia~D~DgDRl~vvd~~G~~l~~d~~~~lla~~ll~~~~~~~~~~~~vv~~~~ss~~l~~ia~~~g~~v 347 (499)
.+.|++.++|+||++||||||++++|++|+++++|++++|+++++++. ++...||.|++||.+++++|+++|+++
T Consensus 221 ~~~v~~~~adlgia~DgDaDR~~vvd~~G~~~~gd~l~~l~a~~ll~~-----~~~~~vv~~v~ss~~l~~~a~~~g~~~ 295 (441)
T cd05805 221 GRIVKALGADFGVIIDPNGERLILVDEAGRVISDDLLTALVSLLVLKS-----EPGGTVVVPVTAPSVIEQLAERYGGRV 295 (441)
T ss_pred HHHHHhCCCCEEEEEcCCCCEEEEECCCCCEEChhHHHHHHHHHHHHh-----CCCCeEEEEccchHHHHHHHHHcCCEE
Confidence 999999999999999999999999999999999999999999999752 222469999999999999999999999
Q ss_pred EEeecchhHHhhhhhccCceEEEEecCCC-CCCCccCCchHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCceEeeeccc
Q psy5979 348 FEVPTGWKYFGNLMDAGRLSLCGEESFGT-GSDHIREKDGIWAVLAWLSVVEHTGKPVEEILKSHWKQYGRNYFTRYDYE 426 (499)
Q Consensus 348 ~~t~tG~k~i~~~~~~~~~~~g~Eesgg~-~~~~~~~~Dgi~a~l~lle~la~~~~~L~ell~~lp~~~g~~~~~~~~~~ 426 (499)
++|+|||+||+++|.+ +++||||+|||+ +++|.+++||++++++++|+|+.++++|+++++++|+.|+ .+.+ +
T Consensus 296 ~~t~vG~~~i~~~m~~-~~~~ggE~sG~~~~~~~~~~~Dgi~a~l~lle~la~~~~~l~~l~~~l~~~~~----~~~~-~ 369 (441)
T cd05805 296 IRTKTSPQALMEAALE-NVVLAGDGDGGFIFPEFHPGFDAIAALVKILEMLARTNISLSQIVDELPRFYV----LHKE-V 369 (441)
T ss_pred EEEeCChHHHHHHHHh-cccccccCCCcEEccccccCchHHHHHHHHHHHHHhcCCCHHHHHHhCchhhe----eeeE-E
Confidence 9999999999999998 899999999997 7889999999999999999999999999999999987433 3333 4
Q ss_pred cCCchhHHHHHHHHHhhcCCCCcccccccCCCCcceecccCCCeEEEEeeCCeEEEEeecCCcccccc
Q psy5979 427 NCSAAPCNQMMDELEKKVSAPEFKGVTLSAEGRSGSWWRQEKQGVRSAISQTGLVHIQIIRNRQFRRH 494 (499)
Q Consensus 427 ~~~~~~k~~vm~~l~~~~~~~~~~g~~~~~~~~~~~~~v~~iDGik~~~~d~~Wvlir~s~~~~~~~~ 494 (499)
.|+|+.++++|++|.+.... .+++++||+|+.|+| ||+|||||++.|-=|.
T Consensus 370 ~~~~~~~~~~~~~l~~~~~~----------------~~~~~~DGvri~~~~-gW~liRpS~TeP~iri 420 (441)
T cd05805 370 PCPWEAKGRVMRRLIEEAPD----------------KSIELIDGVKIYEDD-GWVLVLPDADEPLCHI 420 (441)
T ss_pred ECChHHhhHHHHHHHHhcCC----------------CCceecceeEEecCC-CEEEEecCCCCCEEEE
Confidence 68888888899999876532 368899999999986 7999999999986443
No 7
>cd03087 PGM_like1 This archaeal PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=100.00 E-value=1.4e-79 Score=649.17 Aligned_cols=394 Identities=25% Similarity=0.342 Sum_probs=347.1
Q ss_pred ccchhhHHHHHhhCCCceEEEeecCCcchHHHHHHHHHHHHHCCCeEEEeCCCcccchhHHHHHHHHcCCccceEEcCCC
Q psy5979 33 FGDVAVDKIIKISGIRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQVTGGIVLTASH 112 (499)
Q Consensus 33 ~~~~a~~~~~~~~~~~~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~g~~pTP~~~fav~~~~~~gGI~ITaSH 112 (499)
-.|.|||++++ +++|+||||+|.+|++|+++++++|+++|++|+++ |.+|||+++|++++++ +|||||||||
T Consensus 22 ~l~~a~~~~l~----~~~VvVg~D~R~~s~~l~~a~~~gL~~~G~~V~~~---g~~~tP~~~~~v~~~~-~gGi~ItaSh 93 (439)
T cd03087 22 KVGKALGTYLG----GGTVVVGRDTRTSGPMLKNAVIAGLLSAGCDVIDI---GIVPTPALQYAVRKLG-DAGVMITASH 93 (439)
T ss_pred HHHHHHHhhcc----CCeEEEEeCCCCCHHHHHHHHHHHHHHCCCeEEEc---CccChHHHHHHHHhcC-CceEEEEeCC
Confidence 34678888876 45899999999999999999999999999999998 8999999999999999 9999999999
Q ss_pred CCCCCCCCceeEEEcCCCCCCChhHHHHHHHHHHhhhccCcCCCcccccccccCccccccCCcceEEEeC-cHHHHHHHH
Q psy5979 113 NPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITTQIKTYSIVPDLKVDITSIGSSSYEVDGAQFQVDVID-SVEVYLQLM 191 (499)
Q Consensus 113 NP~~~~~~nGiK~~~~~G~~~~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~d-~~~~Y~~~l 191 (499)
|| ++||||||++++|.+++++.+++|++++.+ ++++++ .++.+|. +...+ ..+.|++.+
T Consensus 94 np---~~~ngiK~~~~~G~~i~~~~~~~Ie~~~~~-~~~~~~-----~~~~~g~-----------~~~~~~~~~~Y~~~l 153 (439)
T cd03087 94 NP---PEYNGIKLVNPDGTEFSREQEEEIEEIIFS-ERFRRV-----AWDEVGS-----------VRREDSAIDEYIEAI 153 (439)
T ss_pred CC---HHHCcEEEECCCCCcCCHHHHHHHHHHHhc-CCcccc-----ccccCee-----------EEecCccHHHHHHHH
Confidence 99 899999999999999999999999998876 455432 1222332 33445 789999999
Q ss_pred HhhcCchhHHhhhcCCCCCCCcEEEEcCCCCCChHHHHHHHHHhcCCCcceeeecccCCCCCCCCCCCCcccHHHHHHHH
Q psy5979 192 KEIFDFPKLQSLIKGSSGRPPFKLLINAMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDPNLTYAADLVQAM 271 (499)
Q Consensus 192 ~~~i~~~~i~~~~~~~~~~~~lkVvvD~~~G~~~~~~~~il~~~lG~~~~~~v~~~~d~~F~~~~p~P~~~~l~~l~~~v 271 (499)
.+.++.+. .+++||++||+||+++.+++++| ++|||+++ .+|+.|||+||++.|+|+++++.++.+.+
T Consensus 154 ~~~~~~~~----------~~~lkIvid~~~G~~~~~~~~~l-~~lg~~v~-~~~~~~d~~f~~~~p~p~~~~l~~l~~~v 221 (439)
T cd03087 154 LDKVDIDG----------GKGLKVVVDCGNGAGSLTTPYLL-RELGCKVI-TLNANPDGFFPGRPPEPTPENLSELMELV 221 (439)
T ss_pred HHhcCccc----------CCCCEEEEECCCCchHHHHHHHH-HHcCCEEE-EECCcCCCCCCCCCCCCCHHHHHHHHHHH
Confidence 99887432 15899999999999999999999 99999987 59999999999999999999999999999
Q ss_pred HhCCCcEEEeeCCCCCeeEEEccCceEeCCCcHHHHHHHHHhcCchhhhcCccceeeeccchHHHHHHHHHCCCcEEEee
Q psy5979 272 QAGDFDLGAAFDGDGDRNMVLGKKAFFVNPSDSLAVLAAHLDSIPYFKKTGVKGYARSMPTGAAVDRVAKANNKELFEVP 351 (499)
Q Consensus 272 ~~~~adlgia~D~DgDRl~vvd~~G~~l~~d~~~~lla~~ll~~~~~~~~~~~~vv~~~~ss~~l~~ia~~~g~~v~~t~ 351 (499)
++.++|+|+++||||||++++|++|+++++|++++|+++++++ . +...||.|++||++++++|+++|+++++|+
T Consensus 222 ~~~~adlgia~D~DgDR~~~vd~~G~~l~~d~~~~l~a~~ll~-----~-~~~~vv~~v~ss~~l~~~a~~~g~~~~~~~ 295 (439)
T cd03087 222 RATGADLGIAHDGDADRAVFVDEKGRFIDGDKLLALLAKYLLE-----E-GGGKVVTPVDASMLVEDVVEEAGGEVIRTP 295 (439)
T ss_pred HhcCCCEEEEEcCCCceEEEECCCCCEechHHHHHHHHHHHHh-----c-CCCcEEEeccchHHHHHHHHHcCCEEEEEe
Confidence 9999999999999999999999999999999999999999985 2 224699999999999999999999999999
Q ss_pred cchhHHhhhhhccCceEEEEecCCC-CCCCccCCchHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCceEeeeccccCCc
Q psy5979 352 TGWKYFGNLMDAGRLSLCGEESFGT-GSDHIREKDGIWAVLAWLSVVEHTGKPVEEILKSHWKQYGRNYFTRYDYENCSA 430 (499)
Q Consensus 352 tG~k~i~~~~~~~~~~~g~Eesgg~-~~~~~~~~Dgi~a~l~lle~la~~~~~L~ell~~lp~~~g~~~~~~~~~~~~~~ 430 (499)
||||||+++|.+.+++||||||||+ +++|.+++||++++++++|+|+.+ ++|+++++++|+ +++.+.+ +.|+|
T Consensus 296 ~G~k~i~~~m~~~~~~~ggE~sgg~~~~~~~~~~Dgi~a~~~lle~l~~~-~~l~~~~~~~~~----~~~~~~~-v~~~~ 369 (439)
T cd03087 296 VGDVHVAEEMIENGAVFGGEPNGGWIFPDHQLCRDGIMTAALLLELLAEE-KPLSELLDELPK----YPLLREK-VECPD 369 (439)
T ss_pred cChHHHHHHHHhcCCeEEecCCCCEecCCcCCcCCHHHHHHHHHHHHhcC-CCHHHHHHhccc----ccccccc-ccCCh
Confidence 9999999999988999999999997 788999999999999999999998 999999999864 2334444 47999
Q ss_pred hhHHHHHHHHHhhcCCCCcccccccCCCCcceecccCCCeEEEEeeCCeEEEEeecCCccccc
Q psy5979 431 APCNQMMDELEKKVSAPEFKGVTLSAEGRSGSWWRQEKQGVRSAISQTGLVHIQIIRNRQFRR 493 (499)
Q Consensus 431 ~~k~~vm~~l~~~~~~~~~~g~~~~~~~~~~~~~v~~iDGik~~~~d~~Wvlir~s~~~~~~~ 493 (499)
+.++++|++|.+..+.+ + .+++.+||+|+.|+| ||+|||||++.|-=|
T Consensus 370 ~~~~~i~~~l~~~~~~~---~-----------~~i~~~DG~k~~~~~-~WvliRpS~tep~~r 417 (439)
T cd03087 370 EKKEEVMEAVEEELSDA---D-----------EDVDTIDGVRIEYED-GWVLIRPSGTEPKIR 417 (439)
T ss_pred HhHHHHHHHHHHhhhhc---c-----------CCeeecceEEEecCC-cEEEEeccCCccEEE
Confidence 88999999998864321 0 368999999999987 899999999998533
No 8
>PRK09542 manB phosphomannomutase/phosphoglucomutase; Reviewed
Probab=100.00 E-value=5.3e-79 Score=644.60 Aligned_cols=412 Identities=20% Similarity=0.236 Sum_probs=345.3
Q ss_pred CCCCCCeEEEeCCcccccchhhHHHHHhhCCCceEEEeecCCcchHHHHHHHHHHHHHCCCeEEEeCCCcccchhHHHHH
Q psy5979 17 DKLKGSVLVVGGDGRYFGDVAVDKIIKISGIRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSAL 96 (499)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~g~~pTP~~~fa 96 (499)
||.-|..++ ....+-.+.|||+++++++ +++|+||||+|++|++|+++++++|+++|++|+++ |.+|||+++|+
T Consensus 7 RG~~~~~lt--~~~v~~l~~a~~~~l~~~~-~~~VvVg~D~R~~s~~l~~a~~~gL~s~G~~V~~l---g~~pTP~~~~a 80 (445)
T PRK09542 7 RGVVGEQID--EDLVRDVGAAFARLMRAEG-ATTVVIGHDMRDSSPELAAAFAEGVTAQGLDVVRI---GLASTDQLYFA 80 (445)
T ss_pred ccccCCCcC--HHHHHHHHHHHHHHHHHcC-CCeEEEEeCCCCCHHHHHHHHHHHHHHCCCEEEEe---CCCCCHHHHhe
Confidence 454444333 2444556789999997443 57899999999999999999999999999999998 89999999999
Q ss_pred HHHcCCccceEEcCCCCCCCCCCCceeEEEcCCCCCCChhH-HHHHHHHHHhhhccCcCCCcccccccccCccccccCCc
Q psy5979 97 IRKHQVTGGIVLTASHNPGGPDNDFGIKFNTSNGGPAPDAV-TENIYKITTQIKTYSIVPDLKVDITSIGSSSYEVDGAQ 175 (499)
Q Consensus 97 v~~~~~~gGI~ITaSHNP~~~~~~nGiK~~~~~G~~~~~~~-~~~Ie~~~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~ 175 (499)
+++++| +|||||||||| ++|||+|++.+.|.++.++. +++|++.+.+ .+ + .....+|
T Consensus 81 v~~~~~-~Gi~iTaSHNP---~~~nG~Ki~~~~~~~~~~~~~i~~i~~~~~~--~~---~---~~~~~~g---------- 138 (445)
T PRK09542 81 SGLLDC-PGAMFTASHNP---AAYNGIKLCRAGAKPVGQDTGLAAIRDDLIA--GV---P---AYDGPPG---------- 138 (445)
T ss_pred ecccCC-CEEEEcCCCCC---CccCcEEEecCCCcccCchhHHHHHHHHHhc--cc---c---cccCCCC----------
Confidence 999999 69999999999 79999999998888888753 3444433321 10 0 0001122
Q ss_pred ceEEEeCcHHHHHHHHHhhcCchhHHhhhcCCCCCCCcEEEEcCCCCCChHHHHHHHHHhcCCCcceeeecccCCCCCCC
Q psy5979 176 FQVDVIDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINAMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGGH 255 (499)
Q Consensus 176 ~~~~~~d~~~~Y~~~l~~~i~~~~i~~~~~~~~~~~~lkVvvD~~~G~~~~~~~~il~~~lG~~~~~~v~~~~d~~F~~~ 255 (499)
.+...+..+.|++.+++.++.+.+ +++||++||+||+++.+++++| ++|||+++ .+|++|||+||++
T Consensus 139 -~~~~~~~~~~Y~~~l~~~i~~~~i----------~~lkVvvd~~~Ga~~~~~~~ll-~~lg~~vv-~~~~~~d~~Fp~~ 205 (445)
T PRK09542 139 -TVTERDVLADYAAFLRSLVDLSGI----------RPLKVAVDAGNGMGGHTVPAVL-GGLPITLL-PLYFELDGTFPNH 205 (445)
T ss_pred -ceeccChHHHHHHHHHHhcccccC----------CCCEEEEECCCCchhHHHHHHH-HhCCCEEE-EEecCcCCCCCCC
Confidence 233447789999999999875433 4799999999999999999999 99999987 6999999999999
Q ss_pred CCCCC-cccHHHHHHHHHhCCCcEEEeeCCCCCeeEEEccCceEeCCCcHHHHHHHHHhcCchhhhcCccceeeeccchH
Q psy5979 256 HPDPN-LTYAADLVQAMQAGDFDLGAAFDGDGDRNMVLGKKAFFVNPSDSLAVLAAHLDSIPYFKKTGVKGYARSMPTGA 334 (499)
Q Consensus 256 ~p~P~-~~~l~~l~~~v~~~~adlgia~D~DgDRl~vvd~~G~~l~~d~~~~lla~~ll~~~~~~~~~~~~vv~~~~ss~ 334 (499)
.|+|. ++++.++.+.+++.+||+||++||||||++++|++|+++++|++++|+++++++ .++...||.|++||+
T Consensus 206 ~p~P~~~~~l~~l~~~v~~~~adlGia~DgD~DR~~ivd~~G~~l~~d~~~~l~~~~~l~-----~~~~~~vv~~v~ss~ 280 (445)
T PRK09542 206 EANPLDPANLVDLQAFVRETGADIGLAFDGDADRCFVVDERGQPVSPSAVTALVAARELA-----REPGATIIHNLITSR 280 (445)
T ss_pred CcCCCCHHHHHHHHHHHHHcCCCEEEEECCCCceEEEECCCCCCccHHHHHHHHHHHHHH-----HCCCCeEEEeeccch
Confidence 99997 588999999999999999999999999999999999999999999999999875 223346999999999
Q ss_pred HHHHHHHHCCCcEEEeecchhHHhhhhhccCceEEEEecCCC-CCCCccCCchHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q psy5979 335 AVDRVAKANNKELFEVPTGWKYFGNLMDAGRLSLCGEESFGT-GSDHIREKDGIWAVLAWLSVVEHTGKPVEEILKSHWK 413 (499)
Q Consensus 335 ~l~~ia~~~g~~v~~t~tG~k~i~~~~~~~~~~~g~Eesgg~-~~~~~~~~Dgi~a~l~lle~la~~~~~L~ell~~lp~ 413 (499)
+++++|+++|+++++|||||+||+++|.+.+++||||||||+ ++++.+++|||++++++||+|+.++++|+++++++|+
T Consensus 281 ~~~~~a~~~g~~~~~t~vG~~~i~~~m~~~~~~~ggE~sgg~~f~~~~~~~Dgi~a~~~lle~l~~~~~~l~~l~~~~~~ 360 (445)
T PRK09542 281 AVPELVAERGGTPVRTRVGHSFIKALMAETGAIFGGEHSAHYYFRDFWGADSGMLAALHVLAALGEQDRPLSELMADYQR 360 (445)
T ss_pred hHHHHHHHcCCeEEEecCcHHHHHHHHHHhCCcEEEeeeccEEecCcCCCCcHHHHHHHHHHHHHhcCCCHHHHHHhhhh
Confidence 999999999999999999999999999998999999999997 7899999999999999999999999999999987654
Q ss_pred HhCCceEeeeccccCCchhHHHHHHHHHhhcCCCCcccccccCCCCcceecccCCCeEEEEeeCCeEEEEeecCCccccc
Q psy5979 414 QYGRNYFTRYDYENCSAAPCNQMMDELEKKVSAPEFKGVTLSAEGRSGSWWRQEKQGVRSAISQTGLVHIQIIRNRQFRR 493 (499)
Q Consensus 414 ~~g~~~~~~~~~~~~~~~~k~~vm~~l~~~~~~~~~~g~~~~~~~~~~~~~v~~iDGik~~~~d~~Wvlir~s~~~~~~~ 493 (499)
++... .+.|+|+.++++|++|.+++... ..+++++||+|++|+||+|+|||||++.|.=|
T Consensus 361 -----~~~~~-~~~~~~~~~~~~~~~l~~~~~~~--------------~~~~~~~DGvki~~~dg~WvliRpSgTEP~lr 420 (445)
T PRK09542 361 -----YAASG-EINSTVADAPARMEAVLKAFADR--------------IVSVDHLDGVTVDLGDGSWFNLRASNTEPLLR 420 (445)
T ss_pred -----cCccc-ceeecCCCHHHHHHHHHHHhhhc--------------cCCceecceEEEEecCCcEEEEEecCCCcEEE
Confidence 22222 23688877888999998766431 02689999999999887899999999998644
Q ss_pred c
Q psy5979 494 H 494 (499)
Q Consensus 494 ~ 494 (499)
.
T Consensus 421 i 421 (445)
T PRK09542 421 L 421 (445)
T ss_pred E
Confidence 3
No 9
>PLN02307 phosphoglucomutase
Probab=100.00 E-value=1.8e-77 Score=644.26 Aligned_cols=444 Identities=53% Similarity=0.889 Sum_probs=342.3
Q ss_pred cchhh-HHHHHhhCCCceEEEeecCCcchHHHHHHHHHHHHHCCCeEEEeCCCcccchhHHHHHHHHc---CCccceEEc
Q psy5979 34 GDVAV-DKIIKISGIRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKH---QVTGGIVLT 109 (499)
Q Consensus 34 ~~~a~-~~~~~~~~~~~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~g~~pTP~~~fav~~~---~~~gGI~IT 109 (499)
.+.|. +.++.+...+.+|+||||+|.+|++|+++++++|+++|++|+++++.|++|||+++|+++++ +|++|||||
T Consensus 46 ig~a~~~~~~~~~~~~~~VvVG~D~R~~S~~fa~~~a~~L~a~Gi~V~~~~~~G~~PTP~vsfav~~~~~~~a~gGImIT 125 (579)
T PLN02307 46 FVQALFNALPAEKVKGATLVLGGDGRYFNKEAIQIIIKIAAANGVRRVWVGQNGLLSTPAVSAVIRERDGSKANGGFILT 125 (579)
T ss_pred HHHHHHHHHHhcCCCCCeEEEEeCCCcchHHHHHHHHHHHHHCCCEEEEeCCCCccCchHHHHHHHHhcccCCCeEEEEe
Confidence 34533 55543211234699999999999999999999999999999999544799999999999999 999999999
Q ss_pred CCCCCCCCCCCceeEEEcCCCCCCChhHHHHHHHHHHhhhcc---CcCCCcc---cccccccCccccccCCcceEEEeCc
Q psy5979 110 ASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITTQIKTY---SIVPDLK---VDITSIGSSSYEVDGAQFQVDVIDS 183 (499)
Q Consensus 110 aSHNP~~~~~~nGiK~~~~~G~~~~~~~~~~Ie~~~~~~~~~---~~~~~~~---~~~~~ig~~~~~~~~~~~~~~~~d~ 183 (499)
|||||+..++|||||+++++|.++.++.+++|++.+..++.. ...+... .....++. ......+..|.
T Consensus 126 ASHNP~~~~eyNGiK~~~~~G~~~~~~~~~~I~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~d~ 199 (579)
T PLN02307 126 ASHNPGGPEEDFGIKYNYESGQPAPESITDKIYGNTLTIKEYKMAEDIPDVDLSAVGVTKFGG------PEDFDVEVIDP 199 (579)
T ss_pred cCCCCCCCCCCCEEEEECCCCCcCCcHHHHHHHHHHHhhhhhhhcccccccchhhhccccccc------ccccceEEecC
Confidence 999993224899999999999999999988896543321110 0000000 00011110 00111234477
Q ss_pred HHHHHHHHHhhcCchhHHhhhcCCCCCCCcEEEEcCCCCCChHHHHHHHHH-hcCCCcceeeecccCCCCCCCCCCCCcc
Q psy5979 184 VEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINAMHGVTGPYVKKIFLE-ELGAQPDNAVNTTPLPDFGGHHPDPNLT 262 (499)
Q Consensus 184 ~~~Y~~~l~~~i~~~~i~~~~~~~~~~~~lkVvvD~~~G~~~~~~~~il~~-~lG~~~~~~v~~~~d~~F~~~~p~P~~~ 262 (499)
.+.|++.+.+.++.+.|++... .+++||++||+||+++.+++++| + ++||+++..+|++|||+||++.|||+++
T Consensus 200 ~~~Yi~~l~~~i~~~~i~~~~~----~~~lkVvvD~~hGag~~~~~~lL-~~~lG~~~~~~i~~~pDg~Fp~~~PnP~~~ 274 (579)
T PLN02307 200 VEDYVKLMKSIFDFELIKKLLS----RPDFTFCFDAMHGVTGAYAKRIF-VEELGAPESSLLNCVPKEDFGGGHPDPNLT 274 (579)
T ss_pred HHHHHHHHHHhhCHHHHhhhcc----cCCCeEEEeCCCCccHHHHHHHH-HHhcCCCceeeecCccCCCCCCCCCCCCHH
Confidence 8999999999887665653110 14899999999999999999998 6 8999875359999999999999999888
Q ss_pred cHHHHHHHH-------HhCCCcEEEeeCCCCCeeEEEccCceEeCCCcHHHHHHHHHhcCchhhhcCccceeeeccchHH
Q psy5979 263 YAADLVQAM-------QAGDFDLGAAFDGDGDRNMVLGKKAFFVNPSDSLAVLAAHLDSIPYFKKTGVKGYARSMPTGAA 335 (499)
Q Consensus 263 ~l~~l~~~v-------~~~~adlgia~D~DgDRl~vvd~~G~~l~~d~~~~lla~~ll~~~~~~~~~~~~vv~~~~ss~~ 335 (499)
.+.++...+ ++.++|+|||+||||||++++ ++|+++.+++++++++.++++...+..++...||.|++||.+
T Consensus 275 ~l~~lv~~~~~~~~~~~~~~aDlgiA~DgDaDR~~vv-~~g~~i~~d~~l~ll~~~~l~~~~~~~~g~~~VV~tv~sS~~ 353 (579)
T PLN02307 275 YAKELVKRMGLGKTSYGDEPPEFGAASDGDGDRNMIL-GKRFFVTPSDSVAIIAANAQEAIPYFSGGLKGVARSMPTSAA 353 (579)
T ss_pred HHHHHHHHhhhccccccccCCCEEEEeCCCCCeEEEE-ecCcEEcCChHHHHHHHHHHHhhhhhhcCCcEEEEeChhhHH
Confidence 888877666 234699999999999999999 779999999999999988864200001121259999999999
Q ss_pred HHHHHHHCCCcEEEeecchhHHhhhhhccCceEEEEecCCCCCCCccCCchHHHHHHHHHHHHHcCC---------CHHH
Q psy5979 336 VDRVAKANNKELFEVPTGWKYFGNLMDAGRLSLCGEESFGTGSDHIREKDGIWAVLAWLSVVEHTGK---------PVEE 406 (499)
Q Consensus 336 l~~ia~~~g~~v~~t~tG~k~i~~~~~~~~~~~g~Eesgg~~~~~~~~~Dgi~a~l~lle~la~~~~---------~L~e 406 (499)
++++|+++|+++++|+||||||.++|.+.+++||||||||++++|.+++|||+++++++|+++..++ ||.+
T Consensus 354 l~~ia~~~G~~~~~t~vGfk~I~~~m~e~~~~~GgEeSgG~~~~~~~dkDGi~aallllel~a~~~~~~~~~~~~~tl~~ 433 (579)
T PLN02307 354 LDVVAKKLNLPFFEVPTGWKFFGNLMDAGKLSICGEESFGTGSDHIREKDGIWAVLAWLSILAHKNKDVLPGGKLVTVED 433 (579)
T ss_pred HHHHHHHcCCeEEEcCchHHHHHHHHHhCCcEEEEcccCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCcccccCcCCHHH
Confidence 9999999999999999999999999999899999999999888899999999999999999987654 6899
Q ss_pred HHHHHHHHhCCceEeeeccccCCchhHHHHHHHHHhhcCC----CCccccccc-CCCCcce----ecccCCCeEEEEeeC
Q psy5979 407 ILKSHWKQYGRNYFTRYDYENCSAAPCNQMMDELEKKVSA----PEFKGVTLS-AEGRSGS----WWRQEKQGVRSAISQ 477 (499)
Q Consensus 407 ll~~lp~~~g~~~~~~~~~~~~~~~~k~~vm~~l~~~~~~----~~~~g~~~~-~~~~~~~----~~v~~iDGik~~~~d 477 (499)
.+++|+++||++++.+.++..|..+++.++|++|++..+. ....|.++. ..+..+. ..+...||+|+.|+|
T Consensus 434 ~l~el~~~~G~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~v~~~~d~~~~~~~~~~~~~~dglk~~~~d 513 (579)
T PLN02307 434 IVREHWATYGRNFYSRYDYENVDSEAANKMMDHLRDLVNKSKKGIKYGVYTLAFADDFEYTDPVDGSVSSKQGIRFLFTD 513 (579)
T ss_pred HHHHHHHHhCCCeeeecceecCCHHHHHHHHHHHhcccccccCCCEecceEEEEEeeceeecCCCCCCCccCeEEEEEcC
Confidence 9999999999998888877656546677899999874211 122222111 1110000 023458999999999
Q ss_pred CeEEEEeecCCc
Q psy5979 478 TGLVHIQIIRNR 489 (499)
Q Consensus 478 ~~Wvlir~s~~~ 489 (499)
|+|+++|||++.
T Consensus 514 g~wi~~RpSGTE 525 (579)
T PLN02307 514 GSRIIFRLSGTG 525 (579)
T ss_pred CeEEEEEcCCCC
Confidence 999999999998
No 10
>PRK15414 phosphomannomutase CpsG; Provisional
Probab=100.00 E-value=2.4e-78 Score=641.02 Aligned_cols=419 Identities=21% Similarity=0.251 Sum_probs=346.7
Q ss_pred HHhhc-CCCCCCeEEEeCCcccccchhhHHHHHhhCCCceEEEeecCCcchHHHHHHHHHHHHHCCCeEEEeCCCcccch
Q psy5979 12 LTALG-DKLKGSVLVVGGDGRYFGDVAVDKIIKISGIRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILST 90 (499)
Q Consensus 12 ~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~g~~pT 90 (499)
|+..| ||.-|..++ +...+-.|.|||++++ . ++|+||||+|.+|++|++++++||+++|++|+++ |.+||
T Consensus 7 Fg~~GiRG~~~~~lt--~~~~~~~~~a~a~~l~---~-~~VvVg~D~R~ss~~l~~a~a~gL~s~Gi~V~~~---g~~pT 77 (456)
T PRK15414 7 FKAYDIRGKLGEELN--EDIAWRIGRAYGEFLK---P-KTIVLGGDVRLTSETLKLALAKGLQDAGVDVLDI---GMSGT 77 (456)
T ss_pred ecccCcceeeCCCcC--HHHHHHHHHHHHHHhc---C-CeEEEEECCCCChHHHHHHHHHHHHHCCCeEEEe---CCcCh
Confidence 34444 554444322 2444445788999886 2 3899999999999999999999999999999998 89999
Q ss_pred hHHHHHHHHcCCccceEEcCCCCCCCCCCCceeEEEcCCCCCCChhH-HHHHHHHHHhhhccCcCCCcccccccccCccc
Q psy5979 91 PAVSALIRKHQVTGGIVLTASHNPGGPDNDFGIKFNTSNGGPAPDAV-TENIYKITTQIKTYSIVPDLKVDITSIGSSSY 169 (499)
Q Consensus 91 P~~~fav~~~~~~gGI~ITaSHNP~~~~~~nGiK~~~~~G~~~~~~~-~~~Ie~~~~~~~~~~~~~~~~~~~~~ig~~~~ 169 (499)
|+++|++++++|++|||||||||| ++|||+|+++++|.+++++. +++|++++.+ ++|.++ ....+|
T Consensus 78 P~~~~av~~~~~~gGI~ITaSHNP---~~~NG~Ki~~~~g~~~~~~~~~~~i~~~~~~-~~~~~~-----~~~~~g---- 144 (456)
T PRK15414 78 EEIYFATFHLGVDGGIEVTASHNP---MDYNGMKLVREGARPISGDTGLRDVQRLAEA-NDFPPV-----DETKRG---- 144 (456)
T ss_pred HHHHHhhhccCCCeEEEEecCCCC---CCCCCEEeecCCCcccCcHHHHHHHHHHHhc-CCcccc-----cccCCC----
Confidence 999999999999999999999999 89999999999998888865 3567776543 344211 111222
Q ss_pred cccCCcceEEEeCcHHHHHHHHHhhcCchhHHhhhcCCCCCCCcEEEEcCCCCCChHHHHHH---HHHhcCCCcc-eeee
Q psy5979 170 EVDGAQFQVDVIDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINAMHGVTGPYVKKI---FLEELGAQPD-NAVN 245 (499)
Q Consensus 170 ~~~~~~~~~~~~d~~~~Y~~~l~~~i~~~~i~~~~~~~~~~~~lkVvvD~~~G~~~~~~~~i---l~~~lG~~~~-~~v~ 245 (499)
.+...+..+.|++.+++.++.+.+ +++||++||+||+++.+++.+ | ++|||++. ..++
T Consensus 145 -------~~~~~~~~~~Yi~~l~~~id~~~~----------~~lkVvvD~~~G~~~~~~~~l~~~l-~~lG~~v~v~~~~ 206 (456)
T PRK15414 145 -------RYQQINLRDAYVDHLFGYINVKNL----------TPLKLVINSGNGAAGPVVDAIEARF-KALGAPVELIKVH 206 (456)
T ss_pred -------cEEecCcHHHHHHHHHHhcccccC----------CCCEEEEECCCCcchhhHHHHHHHH-HhcCCCeEEEEee
Confidence 244446789999999998875322 479999999999999999998 7 99999532 2478
Q ss_pred cccCCCCCCCCCCCC-cccHHHHHHHHHhCCCcEEEeeCCCCCeeEEEccCceEeCCCcHHHHHHHHHhcCchhhhcCcc
Q psy5979 246 TTPLPDFGGHHPDPN-LTYAADLVQAMQAGDFDLGAAFDGDGDRNMVLGKKAFFVNPSDSLAVLAAHLDSIPYFKKTGVK 324 (499)
Q Consensus 246 ~~~d~~F~~~~p~P~-~~~l~~l~~~v~~~~adlgia~D~DgDRl~vvd~~G~~l~~d~~~~lla~~ll~~~~~~~~~~~ 324 (499)
++|||.||++.|+|+ ++++.++.+.+++.+||+||++||||||++++|++|+++++|++++|+++++++. .+..
T Consensus 207 ~~pdg~F~~~~p~P~~~~~l~~l~~~v~~~~adlGia~DgDaDR~~~vde~G~~l~~d~~~~l~a~~ll~~-----~~g~ 281 (456)
T PRK15414 207 NTPDGNFPNGIPNPLLPECRDDTRNAVIKHGADMGIAFDGDFDRCFLFDEKGQFIEGYYIVGLLAEAFLEK-----NPGA 281 (456)
T ss_pred cCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEECCCcceEEEECCCCCEecHHHHHHHHHHHHHHh-----CCCC
Confidence 999999999999998 4789999999999999999999999999999999999999999999999999752 2223
Q ss_pred ceeeeccchHHHHHHHHHCCCcEEEeecchhHHhhhhhccCceEEEEecCCC-CCCCccCCchHHHHHHHHHHHHHcCCC
Q psy5979 325 GYARSMPTGAAVDRVAKANNKELFEVPTGWKYFGNLMDAGRLSLCGEESFGT-GSDHIREKDGIWAVLAWLSVVEHTGKP 403 (499)
Q Consensus 325 ~vv~~~~ss~~l~~ia~~~g~~v~~t~tG~k~i~~~~~~~~~~~g~Eesgg~-~~~~~~~~Dgi~a~l~lle~la~~~~~ 403 (499)
.||.++.+|+.++++++++|+++++|||||+||+++|.+.+++||||||||+ +++|.+++|||++++++||+|+.++++
T Consensus 282 ~vv~~~~~s~~l~~~~~~~g~~~~~t~vG~~~i~~~m~~~~~~~ggE~sgg~~~~~~~~~~Dgi~a~~~ile~la~~~~~ 361 (456)
T PRK15414 282 KIIHDPRLSWNTVDVVTAAGGTPVMSKTGHAFIKERMRKEDAIYGGEMSAHHYFRDFAYCDSGMIPWLLVAELVCLKGKT 361 (456)
T ss_pred eeccCchhhhHHHHHHHHcCCEEEEecCcHHHHHHHHHhcCCeEEEcccceEEeCCCCCCccHHHHHHHHHHHHHccCCC
Confidence 5777676677899999999999999999999999999999999999999997 789999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCceEeeeccccCCchhHHHHHHHHHhhcCCCCcccccccCCCCcceecccCCCeEEEEeeCCeEEEE
Q psy5979 404 VEEILKSHWKQYGRNYFTRYDYENCSAAPCNQMMDELEKKVSAPEFKGVTLSAEGRSGSWWRQEKQGVRSAISQTGLVHI 483 (499)
Q Consensus 404 L~ell~~lp~~~g~~~~~~~~~~~~~~~~k~~vm~~l~~~~~~~~~~g~~~~~~~~~~~~~v~~iDGik~~~~d~~Wvli 483 (499)
|+++++++|++|+.....+.. ..|+|+.++++|+++.+.. .+++++||+|+.|+| +|+||
T Consensus 362 L~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------------------~~~~~~DGvki~~~~-~~lll 421 (456)
T PRK15414 362 LGELVRDRMAAFPASGEINSK-LAQPVEAINRVEQHFSREA------------------LAVDRTDGISMTFAD-WRFNL 421 (456)
T ss_pred HHHHHHHHHHhcCCCCccccC-CCCHHHHHHHHHHHhcccc------------------CcEEecceeEEEeCC-ceEEE
Confidence 999999999998864333332 3677877888887764321 368999999999965 67899
Q ss_pred eecCCcccccce
Q psy5979 484 QIIRNRQFRRHV 495 (499)
Q Consensus 484 r~s~~~~~~~~~ 495 (499)
|||++.|.=|..
T Consensus 422 RpSgTEP~iri~ 433 (456)
T PRK15414 422 RSSNTEPVVRLN 433 (456)
T ss_pred ecCCCceEEEEE
Confidence 999999965543
No 11
>TIGR01132 pgm phosphoglucomutase, alpha-D-glucose phosphate-specific. This enzyme interconverts alpha-D-glucose-1-P and alpha-D-glucose-6-P.
Probab=100.00 E-value=1.1e-77 Score=647.56 Aligned_cols=433 Identities=24% Similarity=0.331 Sum_probs=345.8
Q ss_pred CcccccchhhHHHHHhhCCCceEEEeecCCcchHHHHHHHHHHHHHCCCeEEEeCCCcccchhHHHHHHHHcC-----Cc
Q psy5979 29 DGRYFGDVAVDKIIKISGIRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQ-----VT 103 (499)
Q Consensus 29 ~~~~~~~~a~~~~~~~~~~~~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~g~~pTP~~~fav~~~~-----~~ 103 (499)
...+..+.||++++.+.+...+|+||||+|.+|++|++++++||+++|++|+++++.|.+|||+++|++++++ |.
T Consensus 58 ~~~~~i~~a~a~~~~~~~~~~~VvVG~D~R~sS~~~~~a~a~gL~s~Gi~V~~~~~~G~~pTP~~~~av~~~~~~~~~~~ 137 (543)
T TIGR01132 58 PHILAIAQAIAEYRAAQGITGPLYIGKDTHALSEPAFISVLEVLAANGVEVIVQENNGFTPTPAVSHAILTHNKKGEPLA 137 (543)
T ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEEeCCCcCCHHHHHHHHHHHHHCCCEEEEeCCCCcCCchHHHHHHHHhcccccccc
Confidence 4444457788998876654345999999999999999999999999999999974348999999999999887 78
Q ss_pred cceEEcCCCCCCCCCCCceeEEEcCCCCCCChhHHHHHHHHHHhh-----hccCcCCCcccccccccCccccccCCcceE
Q psy5979 104 GGIVLTASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITTQI-----KTYSIVPDLKVDITSIGSSSYEVDGAQFQV 178 (499)
Q Consensus 104 gGI~ITaSHNP~~~~~~nGiK~~~~~G~~~~~~~~~~Ie~~~~~~-----~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~ 178 (499)
+|||||||||| ++||||||++++|.+++++.+++||+..... ++++++ ..+.++. .+.+
T Consensus 138 gGI~ITASHNP---~e~NGiK~~~~~G~~i~~~~~~~Ie~~i~~~~~~~~e~~~~~-----~~~~~~~--------~g~~ 201 (543)
T TIGR01132 138 DGIVITPSHNP---PEDGGIKYNPPNGGPADTEATQAIEDRANALLANGLKGVKRL-----PLAQALA--------SGTV 201 (543)
T ss_pred eEEEEeCCCCC---CccCeEEEECCCCCCCChHHHHHHHHHHHHhhhccccccccc-----Chhhhhc--------cCce
Confidence 89999999999 8999999999999999999999999874321 123221 1111110 1223
Q ss_pred EEeCcHHHHHHHHHhhcCchhHHhhhcCCCCCCCcEEEEcCCCCCChHHHHHHHHHhcCCCcceeeecccCCCCCCCCCC
Q psy5979 179 DVIDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINAMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPD 258 (499)
Q Consensus 179 ~~~d~~~~Y~~~l~~~i~~~~i~~~~~~~~~~~~lkVvvD~~~G~~~~~~~~il~~~lG~~~~~~v~~~~d~~F~~~~p~ 258 (499)
...+..+.|++.+.+.++.+.++. +++|||+||+||+++.+++++| ++|||+++ .+|+++||+||.++|+
T Consensus 202 ~~~d~~~~Y~~~l~~~i~~~~i~~--------~~lkVvvD~~~Ga~~~~~~~il-~~lG~~v~-~l~~~~d~~f~~~~pd 271 (543)
T TIGR01132 202 KAHDLVQPYVDGLADIVDMAAIQK--------AGLRLGVDPLGGSGIDYWKRIA-EKYNLNLT-LVNPQVDPTFRFMTLD 271 (543)
T ss_pred ecCCcHHHHHHHHHHhhhhhhhhc--------CCceEEEeCCCCCcHHHHHHHH-HHcCCCEE-EEcCeeCCCCCCCCCC
Confidence 334678999999999988665653 5899999999999999999999 99999986 6999999999987775
Q ss_pred CC-----c-ccHHHHHHHH-HhCCCcEEEeeCCCCCeeEEEccCceEeCCCcHHHHHHHHHhcCchhhhc--Cccceeee
Q psy5979 259 PN-----L-TYAADLVQAM-QAGDFDLGAAFDGDGDRNMVLGKKAFFVNPSDSLAVLAAHLDSIPYFKKT--GVKGYARS 329 (499)
Q Consensus 259 P~-----~-~~l~~l~~~v-~~~~adlgia~D~DgDRl~vvd~~G~~l~~d~~~~lla~~ll~~~~~~~~--~~~~vv~~ 329 (499)
|+ + ...+.+...+ ++.+||+||++||||||++++|++| ++++|++++|+++++++. +.. +...|+.|
T Consensus 272 ~~~~~~~~~~~~e~l~~l~~~~~~aDlGia~DgDaDR~~vvd~~g-~i~gd~~~aLla~~ll~~---~~~~~~~~~Vv~t 347 (543)
T TIGR01132 272 KDGKIRMDCSSPYAMAGLLALRDKYDLAFGNDPDYDRHGIVTPAG-LMNPNHYLAVAINYLFQH---RPQWGGDVAVGKT 347 (543)
T ss_pred cccccCCCCCCHHHHHHHhhcccCCCEEEEeCCCCCCeeEEecCc-eeCHHHHHHHHHHHHHHh---CcccCCCceEEEE
Confidence 33 1 1223344444 4789999999999999999999996 699999999999999863 110 22357889
Q ss_pred ccchHHHHHHHHHCCCcEEEeecchhHHhhhhhccCceEEEEecCCC-CCC-----CccCCchHHHHHHHHHHHHHcCCC
Q psy5979 330 MPTGAAVDRVAKANNKELFEVPTGWKYFGNLMDAGRLSLCGEESFGT-GSD-----HIREKDGIWAVLAWLSVVEHTGKP 403 (499)
Q Consensus 330 ~~ss~~l~~ia~~~g~~v~~t~tG~k~i~~~~~~~~~~~g~Eesgg~-~~~-----~~~~~Dgi~a~l~lle~la~~~~~ 403 (499)
++||++++++|+++|+++++||||||||+++|.+.+++||||||||+ +++ |.+++|||++++++||+|+.+++|
T Consensus 348 v~sS~~l~~ia~~~g~~v~~t~vG~k~i~~~m~~~~~~~ggEeSgg~~~~~~~~~~~~~~~Dgi~a~l~ile~la~~~~~ 427 (543)
T TIGR01132 348 LVSSAMIDRVVADLGRQLVEVPVGFKWFVDGLFDGSFGFGGEESAGASFLRFDGTPWSTDKDGIIMCLLAAEITAVTGKN 427 (543)
T ss_pred eccHHHHHHHHHHcCCceeecCccHHHHHHHHhcCCeEEEEeccCceEecccCCCCcccCcHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999998999999999997 533 899999999999999999999999
Q ss_pred HHHHHHHHHHHhCCceEeeeccccCCchhHHHHHHHHHhhcCC-CCcccccccCCCCcceecccCCCeEEEEeeCCeEEE
Q psy5979 404 VEEILKSHWKQYGRNYFTRYDYENCSAAPCNQMMDELEKKVSA-PEFKGVTLSAEGRSGSWWRQEKQGVRSAISQTGLVH 482 (499)
Q Consensus 404 L~ell~~lp~~~g~~~~~~~~~~~~~~~~k~~vm~~l~~~~~~-~~~~g~~~~~~~~~~~~~v~~iDGik~~~~d~~Wvl 482 (499)
|+++++++|++||.+++.+.+. .|+|+.++.+ ++|+++... ..+.|..+......-...++++||+|+.|+| ||+|
T Consensus 428 L~~ll~~lp~~~~~~~~~~~~~-~~~~~~k~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DGvki~~~~-gWvl 504 (543)
T TIGR01132 428 PQQHYNELAAKFGAPSYNRIQA-PATSAQKARL-KKLSPEMVSATTLAGDPITARLTAAPGNGAAIGGLKVTTDN-GWFA 504 (543)
T ss_pred HHHHHHHHHHHhCCceEEEEec-CChHHHHHHH-HHHhccCCChHHhCCceeEEEEeccCCCCccCCeEEEEEcC-cEEE
Confidence 9999999999999877666655 7988877665 888764321 1334432210000000246789999999976 7999
Q ss_pred EeecCCcccccc
Q psy5979 483 IQIIRNRQFRRH 494 (499)
Q Consensus 483 ir~s~~~~~~~~ 494 (499)
||||++.|-=|.
T Consensus 505 iRpSgTEP~irv 516 (543)
T TIGR01132 505 ARPSGTEDVYKI 516 (543)
T ss_pred EecCCCCceEEE
Confidence 999999986443
No 12
>PRK07564 phosphoglucomutase; Validated
Probab=100.00 E-value=1.5e-76 Score=638.61 Aligned_cols=423 Identities=31% Similarity=0.451 Sum_probs=344.3
Q ss_pred cccccchhhHHHHHhhCCCceEEEeecCCcchHHHHHHHHHHHHHCCCeEEEeCCCcccchhHHHHHHHHcC-----Ccc
Q psy5979 30 GRYFGDVAVDKIIKISGIRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQ-----VTG 104 (499)
Q Consensus 30 ~~~~~~~a~~~~~~~~~~~~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~g~~pTP~~~fav~~~~-----~~g 104 (499)
..+..+.|+|.++.+.+..++|+||||+|.+|++|++++++||+++|++|+++.+.|.+|||+++|++++++ |+|
T Consensus 58 ~v~~i~~a~a~~~~~~~~~~~VvVG~D~R~~S~~~a~a~a~gL~s~Gi~V~~~~~~g~~pTP~~~~av~~~~~~~~~~~g 137 (543)
T PRK07564 58 HILAIFQAICEYRGKQGITGPLFVGGDTHALSEPAIQSALEVLAANGVGVVIVGRGGYTPTPAVSHAILKYNGRGGGLAD 137 (543)
T ss_pred HHHHHHHHHHHHHHhcCCCCeEEEEecCCcCCHHHHHHHHHHHHHCCCEEEEeCCCCcCCchHHHHHHHHhCCCccccce
Confidence 344456788888875443346999999999999999999999999999999875458999999999999999 999
Q ss_pred ceEEcCCCCCCCCCCCceeEEEcCCCCCCChhHHHHHHHHHHhhh-----ccCcCCCcccccccccCccccccCCcceEE
Q psy5979 105 GIVLTASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITTQIK-----TYSIVPDLKVDITSIGSSSYEVDGAQFQVD 179 (499)
Q Consensus 105 GI~ITaSHNP~~~~~~nGiK~~~~~G~~~~~~~~~~Ie~~~~~~~-----~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~ 179 (499)
|||||||||| ++||||||++++|.+++++.+++||+.+..+. ++.++ .++.++. .+.+.
T Consensus 138 GImITASHNP---~e~NGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~e~~~~~-----~~~~~~~--------~g~~~ 201 (543)
T PRK07564 138 GIVITPSHNP---PEDGGIKYNPPNGGPADTDVTDAIEARANELLAYGLKGVKRI-----PLDRALA--------SMTVE 201 (543)
T ss_pred eEEEecCCCC---cccCeEEEECCCCCcCChHHHHHHHHHHHhhhhccccccccc-----ChhHhcc--------CCcEE
Confidence 9999999999 89999999999999999999999998763311 12211 1122211 12244
Q ss_pred EeCcHHHHHHHHHhhcCchhHHhhhcCCCCCCCcEEEEcCCCCCChHHHHHHHHHhcCCCcceeeecccCCCCC------
Q psy5979 180 VIDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINAMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFG------ 253 (499)
Q Consensus 180 ~~d~~~~Y~~~l~~~i~~~~i~~~~~~~~~~~~lkVvvD~~~G~~~~~~~~il~~~lG~~~~~~v~~~~d~~F~------ 253 (499)
..+..+.|++.+.+.++.+.++. +++|||+||+||+++.+++++| ++|||+++ .+|+++||+|+
T Consensus 202 ~~d~~~~Y~~~l~~~i~~~~i~~--------~~lkIvvD~~~G~~~~~~~~ll-~~lG~~v~-~l~~~~d~~f~~~~~~~ 271 (543)
T PRK07564 202 VIDPVADYVEDLENVFDFDAIRK--------AGLRLGVDPLGGATGPYWKAIA-ERYGLDLT-VVNAPVDPTFNFMPLDD 271 (543)
T ss_pred ecccHHHHHHHHHHhhChhhhhc--------CCceEEEecCCCCcHHHHHHHH-HHcCCcEE-EeCCcCCCCCCCCCCCc
Confidence 44778999999999988766653 5899999999999999999999 99999986 69999999885
Q ss_pred --CCCCCCCcccHHHHHHHHH-hCCCcEEEeeCCCCCeeEEEccCceEeCCCcHHHHHHHHHhcCchhhh-cCccceeee
Q psy5979 254 --GHHPDPNLTYAADLVQAMQ-AGDFDLGAAFDGDGDRNMVLGKKAFFVNPSDSLAVLAAHLDSIPYFKK-TGVKGYARS 329 (499)
Q Consensus 254 --~~~p~P~~~~l~~l~~~v~-~~~adlgia~D~DgDRl~vvd~~G~~l~~d~~~~lla~~ll~~~~~~~-~~~~~vv~~ 329 (499)
++.|+|+. ...|...++ +.+||+||++||||||++++|+ |+++++|++++|++.++++.. +. ++...||.|
T Consensus 272 ~~~~~p~P~~--~~~L~~l~~~~~~adlGia~DgDgDRl~vvd~-G~~i~~d~~~alla~~ll~~~--~~~~~~~~Vv~~ 346 (543)
T PRK07564 272 DGKIRMDCSS--PYAMAGLLALKDAFDLAFANDPDGDRHGIVTP-GGLMNPNHYLAVAIAYLFHHR--PGWRAGAGVGKT 346 (543)
T ss_pred cCCcCCCCCh--HHHHHHHHhhccCCCEEEEECCCCCceeEEec-CeeechhHHHHHHHHHHHHhC--cCCCCCceEEEE
Confidence 45577753 233555554 6789999999999999999999 999999999999999987520 00 112269999
Q ss_pred ccchHHHHHHHHHCCCcEEEeecchhHHhhhhhccCceEEEEecCCC-CC-----CCccCCchHHHHHHHHHHHHHcCCC
Q psy5979 330 MPTGAAVDRVAKANNKELFEVPTGWKYFGNLMDAGRLSLCGEESFGT-GS-----DHIREKDGIWAVLAWLSVVEHTGKP 403 (499)
Q Consensus 330 ~~ss~~l~~ia~~~g~~v~~t~tG~k~i~~~~~~~~~~~g~Eesgg~-~~-----~~~~~~Dgi~a~l~lle~la~~~~~ 403 (499)
++||.+++++|+++|+++++||||||||+++|.+.+++||||||||+ +. .|.+++|||++++++||+|+.++++
T Consensus 347 v~sS~~l~~ia~~~g~~v~~t~vG~k~i~~~m~~~~~~~ggEeSgg~~~~~~~~~~~~~~~Dgi~a~l~ile~la~~~~~ 426 (543)
T PRK07564 347 LVSSAMIDRVAAKLGRKLYEVPVGFKWFVNGLDDGSLGFGGEESAGASFLRRDGSVWTTDKDGLIAVLLAAEILAVTGKS 426 (543)
T ss_pred ecchHHHHHHHHHhCCeeeecchHHHHHHHHHhcCceEEEecCcCCeeecccCCCCccccchHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999998999999999997 42 3799999999999999999999999
Q ss_pred HHHHHHHHHHHhCCceEeeeccccCCchhHHHHHHHHHhhcCC-CCcccccccCCCCcceecc-------cCCCeEEEEe
Q psy5979 404 VEEILKSHWKQYGRNYFTRYDYENCSAAPCNQMMDELEKKVSA-PEFKGVTLSAEGRSGSWWR-------QEKQGVRSAI 475 (499)
Q Consensus 404 L~ell~~lp~~~g~~~~~~~~~~~~~~~~k~~vm~~l~~~~~~-~~~~g~~~~~~~~~~~~~v-------~~iDGik~~~ 475 (499)
|+++++++|++||++++.+.+. .|+|+.|+. |++|.+.... ..+.|.++. ..+ +++||+|+.|
T Consensus 427 L~ell~~l~~~~g~~~~~~~~~-~~~~~~k~~-~~~l~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~DGlki~~ 497 (543)
T PRK07564 427 PSEIYRELWARFGRPYYSRHDA-PATPEQKAA-LRKLSPELVGATELAGDPID-------ASLTEAPGNGAAIGGLKVVT 497 (543)
T ss_pred HHHHHHHHHHHhCCceEEEecC-CccHHHHHH-HHHHhccCCCchhhCCcceE-------EEEecCcCCcccCCeEEEEE
Confidence 9999999999999877766665 688887765 8888764322 123332111 112 3599999999
Q ss_pred eCCeEEEEeecCCccccc
Q psy5979 476 SQTGLVHIQIIRNRQFRR 493 (499)
Q Consensus 476 ~d~~Wvlir~s~~~~~~~ 493 (499)
+| ||+|||||++.|-=|
T Consensus 498 ~~-gWvlvRpSgTEP~ir 514 (543)
T PRK07564 498 EN-GWFAARPSGTETTYK 514 (543)
T ss_pred cC-CEEEEEccCCCCeEE
Confidence 87 699999999999533
No 13
>cd05801 PGM_like3 This bacterial PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=100.00 E-value=8.1e-77 Score=638.39 Aligned_cols=433 Identities=26% Similarity=0.340 Sum_probs=341.6
Q ss_pred CcccccchhhHHHHHhhCCCceEEEeecCCcchHHHHHHHHHHHHHCCCeEEEeCCCcccchhHHHHHHHHcCCcc----
Q psy5979 29 DGRYFGDVAVDKIIKISGIRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQVTG---- 104 (499)
Q Consensus 29 ~~~~~~~~a~~~~~~~~~~~~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~g~~pTP~~~fav~~~~~~g---- 104 (499)
...+..+.|+|.++++++..++|+||||+|.+|+++++++++||+++|++|+++++.|.+|||+++|++++++|++
T Consensus 40 ~~v~~i~~a~~~~l~~~~~~~~VvVg~D~R~~S~~~~~~~~~gL~s~Gi~V~~~~~~g~~pTP~~~~av~~~~~~~~~~~ 119 (522)
T cd05801 40 AHILAISQAICDYRKSQGITGPLFLGKDTHALSEPAFISALEVLAANGVEVIIQQNDGYTPTPVISHAILTYNRGRTEGL 119 (522)
T ss_pred HHHHHHHHHHHHHHHhhCCCCeEEEEeCCCcCCHHHHHHHHHHHHHCCCEEEEeCCCCCCCchHHHHHHHHhccccccCC
Confidence 3444457889999875543346999999999999999999999999999999864458999999999999999864
Q ss_pred --ceEEcCCCCCCCCCCCceeEEEcCCCCCCChhHHHHHHHHHHhh-----hccCcCCCcccccccccCccccccCCcce
Q psy5979 105 --GIVLTASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITTQI-----KTYSIVPDLKVDITSIGSSSYEVDGAQFQ 177 (499)
Q Consensus 105 --GI~ITaSHNP~~~~~~nGiK~~~~~G~~~~~~~~~~Ie~~~~~~-----~~~~~~~~~~~~~~~ig~~~~~~~~~~~~ 177 (499)
|||||||||| ++||||||++++|.+++++.+++||++...+ +++.++ .++.+ ...+.
T Consensus 120 ~gGI~ITASHNP---~~~NGiK~~~~~G~~~~~~~~~~Ie~~~~~~~~~~~~~~~~~-----~~~~~--------~~~~~ 183 (522)
T cd05801 120 ADGIVITPSHNP---PEDGGFKYNPPHGGPADTDITRWIEKRANALLANGLKGVKRI-----PLEAA--------LASGY 183 (522)
T ss_pred CcEEEEECCCCC---cccCEEEEECCCCCCCCHHHHHHHHHhhhhhhhccccccccc-----chhhh--------hccCc
Confidence 9999999999 8999999999999999999999998864321 111111 11110 00122
Q ss_pred EEEeCcHHHHHHHHHhhcCchhHHhhhcCCCCCCCcEEEEcCCCCCChHHHHHHHHHhcCCCcceeeecccCCCCCCCCC
Q psy5979 178 VDVIDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINAMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHP 257 (499)
Q Consensus 178 ~~~~d~~~~Y~~~l~~~i~~~~i~~~~~~~~~~~~lkVvvD~~~G~~~~~~~~il~~~lG~~~~~~v~~~~d~~F~~~~p 257 (499)
+...+..+.|++.+.+.++.+.+++ +++|||+||+||+++.+++++| ++|||+++ .++++|||+||.++|
T Consensus 184 ~~~~~~~~~Y~~~l~~~v~~~~~~~--------~~lkVvvd~~~G~~~~~~~~ll-~~lG~~v~-~l~~~~d~~f~~~~p 253 (522)
T cd05801 184 THRHDFVTPYVADLGNVIDMDAIRK--------SGLRLGVDPLGGASVPYWQPIA-EKYGLNLT-VVNPKVDPTFRFMTL 253 (522)
T ss_pred eecCCcHHHHHHHHHHhhChhhhhc--------CCceEEEeCCCCccHHHHHHHH-HHcCCCEE-EEcCeeCCCCCCCCC
Confidence 3334678999999999988665653 5899999999999999999999 99999986 699999999998776
Q ss_pred CC------C---cccHHHHHHHHHhCCCcEEEeeCCCCCeeEEEccCceEeCCCcHHHHHHHHHhcCchhhhcCccceee
Q psy5979 258 DP------N---LTYAADLVQAMQAGDFDLGAAFDGDGDRNMVLGKKAFFVNPSDSLAVLAAHLDSIPYFKKTGVKGYAR 328 (499)
Q Consensus 258 ~P------~---~~~l~~l~~~v~~~~adlgia~D~DgDRl~vvd~~G~~l~~d~~~~lla~~ll~~~~~~~~~~~~vv~ 328 (499)
+| + ++++..+.+. ..+||+||++||||||++++|++|+++++|++++|+++++++.... ..+...|+.
T Consensus 254 ~~~~~~~~~p~~~~~l~~l~~~--~~~adlGia~DgDaDRl~vvd~~G~~l~gd~~~aLla~~ll~~~~~-~~~~~~vv~ 330 (522)
T cd05801 254 DHDGKIRMDCSSPYAMAGLLKL--KDKFDLAFANDPDADRHGIVTPSAGLMNPNHYLSVAIDYLFTHRPL-WNKSAGVGK 330 (522)
T ss_pred CcccCCCCCCCCHHHHHHHHHh--hcCCCEEEEECCCccceeEEecCCeEECHHHHHHHHHHHHHHhCcc-cCCCceEEE
Confidence 53 1 3344455443 2489999999999999999999999999999999999999863100 011236899
Q ss_pred eccchHHHHHHHHHCCCcEEEeecchhHHhhhhhccCceEEEEecCCC-CCC-----CccCCchHHHHHHHHHHHHHcCC
Q psy5979 329 SMPTGAAVDRVAKANNKELFEVPTGWKYFGNLMDAGRLSLCGEESFGT-GSD-----HIREKDGIWAVLAWLSVVEHTGK 402 (499)
Q Consensus 329 ~~~ss~~l~~ia~~~g~~v~~t~tG~k~i~~~~~~~~~~~g~Eesgg~-~~~-----~~~~~Dgi~a~l~lle~la~~~~ 402 (499)
+++||.+++++|+++|+++++||||||||.++|.+.+++||||||||+ ++. |.+++|||+++++++|+|+.+++
T Consensus 331 tv~sS~~l~~ia~~~g~~~~~t~vG~k~i~~~m~~~~~~~ggEeSgg~~~~~~~~~~~~~~~Dgi~a~l~~le~la~~~~ 410 (522)
T cd05801 331 TLVSSSMIDRVAAALGRKLYEVPVGFKWFVDGLLDGSLGFGGEESAGASFLRRDGTVWTTDKDGIIMCLLAAEILAVTGK 410 (522)
T ss_pred EcchHHHHHHHHHHcCCeeeecCccHHHHHHHHhcCCeEEEEeccCceEeccCCCCCcccCchHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999998899999999997 555 88999999999999999999999
Q ss_pred CHHHHHHHHHHHhCCceEeeeccccCCchhHHHHHHHHHhhcCCCCccccccc-CCCCcceecccCCCeEEEEeeCCeEE
Q psy5979 403 PVEEILKSHWKQYGRNYFTRYDYENCSAAPCNQMMDELEKKVSAPEFKGVTLS-AEGRSGSWWRQEKQGVRSAISQTGLV 481 (499)
Q Consensus 403 ~L~ell~~lp~~~g~~~~~~~~~~~~~~~~k~~vm~~l~~~~~~~~~~g~~~~-~~~~~~~~~v~~iDGik~~~~d~~Wv 481 (499)
+|+++++++|++||++++.+.++ .|+|+.++.+++.+.+......+.|..+. ..+.. ...++++||+|+.|+| ||+
T Consensus 411 ~L~~~l~~l~~~~g~~~~~~~~v-~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~DGvk~~~~~-gWv 487 (522)
T cd05801 411 DPGQLYQELTERFGEPYYARIDA-PATPEQKARLKKLSPEQVTATELAGDPILAKLTRA-PGNGASIGGLKVTTAN-GWF 487 (522)
T ss_pred CHHHHHHHHHHHHCcCeeeccCC-CChHHHHHHHHHHhccCCCchHhCCCceEEEEecc-cCCCccCceEEEEEcC-eEE
Confidence 99999999999999877776665 68888777666444332111122222111 00000 0135679999999987 799
Q ss_pred EEeecCCccccc
Q psy5979 482 HIQIIRNRQFRR 493 (499)
Q Consensus 482 lir~s~~~~~~~ 493 (499)
|||||++.|-=|
T Consensus 488 liRpSgTEP~ir 499 (522)
T cd05801 488 AARPSGTEDVYK 499 (522)
T ss_pred EEEccCCCceEE
Confidence 999999998544
No 14
>PLN02371 phosphoglucosamine mutase family protein
Probab=100.00 E-value=6.7e-77 Score=644.58 Aligned_cols=442 Identities=18% Similarity=0.159 Sum_probs=359.2
Q ss_pred HHHhhc-CCCCC-----CeEEEeCCcccccchhhHHHHHhh----CC-CceEEEeecCCcchHHHHHHHHHHHHHCCCeE
Q psy5979 11 ILTALG-DKLKG-----SVLVVGGDGRYFGDVAVDKIIKIS----GI-RSVLVVGGDGRYFGDVAVDKIIKISAANGVAK 79 (499)
Q Consensus 11 ~~~~~~-~~~~~-----~~~~~~~~~~~~~~~a~~~~~~~~----~~-~~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V 79 (499)
|+..+| ||+-+ +++-+-....+..|.|||+++++. +. .++|+||||+|.+|++|++++++||+++|++|
T Consensus 67 lf~~~giRGv~~~g~~g~~v~lTpe~v~~ig~A~a~~l~~~~~~~~~~~~~VvVG~D~R~sS~~l~~a~a~gL~s~Gi~V 146 (583)
T PLN02371 67 LQNGSDIRGVAVEGVEGEPVTLTPPAVEAIGAAFAEWLLEKKKADGSGELRVSVGRDPRISGPRLADAVFAGLASAGLDV 146 (583)
T ss_pred hhhhcCcceEEecCCCCCCCCCCHHHHHHHHHHHHHHHHhhcccccCCCCeEEEEeCCCCChHHHHHHHHHHHHHCCCEE
Confidence 555555 66554 555676677777899999999754 22 25799999999999999999999999999999
Q ss_pred EEeCCCcccchhHHHHHHHHc--CCccceEEcCCCCCCCCCCCceeEEEcCCCCCCChhHHHHHHHHHHhhhccCcCCCc
Q psy5979 80 LIVGQNGILSTPAVSALIRKH--QVTGGIVLTASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITTQIKTYSIVPDL 157 (499)
Q Consensus 80 ~~~~~~g~~pTP~~~fav~~~--~~~gGI~ITaSHNP~~~~~~nGiK~~~~~G~~~~~~~~~~Ie~~~~~~~~~~~~~~~ 157 (499)
+++ |.+|||+++|+++.+ ++++|||||||||| ++||||||++++|.+++++.+++|++.+....+|.+....
T Consensus 147 ~~~---g~~pTP~~~~av~~~~~~~~gGImITASHNP---~~~NGiK~~~~~G~~~~~~~~~~ie~~~~~~~e~~~~~~~ 220 (583)
T PLN02371 147 VDM---GLATTPAMFMSTLTEREDYDAPIMITASHLP---YNRNGLKFFTKDGGLGKPDIKDILERAARIYKEWSDEGLL 220 (583)
T ss_pred EEe---cccCchHHHHHHHhccCCCceEEEEeCCCCC---CCCCCEEEeCCCCCCCchHHHHHHHHHHhhcccccccccc
Confidence 998 899999999999966 88999999999999 8999999999999999999889898776531223211000
Q ss_pred ccccccccCccccccCCcceEEEeCcHHHHHHHHHhhcCchhH----HhhhcCCCCCCCcEEEEcCCCCCChHHHHHHHH
Q psy5979 158 KVDITSIGSSSYEVDGAQFQVDVIDSVEVYLQLMKEIFDFPKL----QSLIKGSSGRPPFKLLINAMHGVTGPYVKKIFL 233 (499)
Q Consensus 158 ~~~~~~ig~~~~~~~~~~~~~~~~d~~~~Y~~~l~~~i~~~~i----~~~~~~~~~~~~lkVvvD~~~G~~~~~~~~il~ 233 (499)
......+ +.+...+..+.|++.|++.++.+.+ .+ ...+++|||+||+||+++.+++++|
T Consensus 221 ~~~~~~~-----------g~i~~~d~~~~Y~~~l~~~i~~~~~~~~~~~-----~~~~~lkIvvD~~nGag~~~~~~lL- 283 (583)
T PLN02371 221 KSSSGAS-----------SVVCRVDFMSTYAKHLRDAIKEGVGHPTNYE-----TPLEGFKIVVDAGNGAGGFFAEKVL- 283 (583)
T ss_pred hhhhccC-----------CcEEEechHHHHHHHHHHHHHHhhccccccc-----cCCCCCEEEEeCCCCchHHHHHHHH-
Confidence 0000111 2234457789999999988764332 10 0125899999999999999999999
Q ss_pred HhcCCCcceeeecccCCCCCCCCCCCCc-ccHHHHHHHHHhCCCcEEEeeCCCCCeeEEEccCceEeCCCcHHHHHHHHH
Q psy5979 234 EELGAQPDNAVNTTPLPDFGGHHPDPNL-TYAADLVQAMQAGDFDLGAAFDGDGDRNMVLGKKAFFVNPSDSLAVLAAHL 312 (499)
Q Consensus 234 ~~lG~~~~~~v~~~~d~~F~~~~p~P~~-~~l~~l~~~v~~~~adlgia~D~DgDRl~vvd~~G~~l~~d~~~~lla~~l 312 (499)
++|||+++..++++|||.||++.|+|+. ++++.+.+.|++.+||+||++||||||++++|++|+++++|++++|+++++
T Consensus 284 ~~LG~~v~~~~~~~pDg~Fp~~~P~P~~~~~l~~l~~~v~~~~aDlGia~DgDaDR~~vvD~~G~~i~gd~l~aLla~~l 363 (583)
T PLN02371 284 EPLGADTSGSLFLEPDGMFPNHIPNPEDKAAMSATTQAVLANKADLGIIFDTDVDRSAVVDSSGREINRNRLIALMSAIV 363 (583)
T ss_pred HHcCCCeEeeccCCCCCCCCCcCCCCCCHHHHHHHHHHHHhcCCCEEEEECCCccceeEECCCCEEECHHHHHHHHHHHH
Confidence 9999997624899999999999999985 678999999999999999999999999999999999999999999999999
Q ss_pred hcCchhhhcCccceeeeccchHHHHHHHHHCCCcEEEeecchhHHhhhhhcc-----CceEEEEecCCC-CCCCccCCch
Q psy5979 313 DSIPYFKKTGVKGYARSMPTGAAVDRVAKANNKELFEVPTGWKYFGNLMDAG-----RLSLCGEESFGT-GSDHIREKDG 386 (499)
Q Consensus 313 l~~~~~~~~~~~~vv~~~~ss~~l~~ia~~~g~~v~~t~tG~k~i~~~~~~~-----~~~~g~Eesgg~-~~~~~~~~Dg 386 (499)
++ .++...||.|++||++++++|+++|+++++|||||+||+++|.+. +++||||||||+ ++++++.+||
T Consensus 364 l~-----~~~g~~VV~~v~sS~~l~~ia~~~G~~v~rt~vG~k~v~~~m~~~~~~~~~~~~ggEeSG~~~~~~~~~~dDg 438 (583)
T PLN02371 364 LE-----EHPGTTIVTDSVTSDGLTTFIEKKGGKHHRFKRGYKNVIDKGVRLNSDGEETHLMIETSGHGALKENHFLDDG 438 (583)
T ss_pred HH-----hCCCCEEEEecccchhHHHHHHHcCCeEEEecCchHHHHHHHHHhhccCCceEEEEcccCeEEECCCCCCCcH
Confidence 85 233346999999999999999999999999999999999999864 379999999996 7889999999
Q ss_pred HHHHHHHHHHHHHc-----CCCHHHHHHHHHHHhCCceEeeeccccCC---chhHH-HHHHHHHhhcCCCCcccccccCC
Q psy5979 387 IWAVLAWLSVVEHT-----GKPVEEILKSHWKQYGRNYFTRYDYENCS---AAPCN-QMMDELEKKVSAPEFKGVTLSAE 457 (499)
Q Consensus 387 i~a~l~lle~la~~-----~~~L~ell~~lp~~~g~~~~~~~~~~~~~---~~~k~-~vm~~l~~~~~~~~~~g~~~~~~ 457 (499)
+++++++|++|+.. +++|+|+++++|+.|..+ ..+.+ +.|+ |+.|+ ++|++|.++... ..+
T Consensus 439 ~~a~~~ile~la~~~~~~~~~~Lsel~~~lp~~~~~~-~~r~~-v~~~~~~~~~kg~~v~~~l~~~~~~--~~~------ 508 (583)
T PLN02371 439 AYLAVKIIIELVRMRAAGAGGGLGDLIEDLEEPLEAV-ELRLK-ILDEGKDFKAYGEEVLEHLRNSIES--DGK------ 508 (583)
T ss_pred HHHHHHHHHHHHHHHhccCCCCHHHHHHhchhccCCc-eeeec-CCccchhHHHHHHHHHHHHHhhhhc--ccc------
Confidence 99999999999875 667999999998866643 33332 3577 77777 799999865321 111
Q ss_pred CCcceecccCCCeEEEE----eeCCeEEEEeecCCcccccc
Q psy5979 458 GRSGSWWRQEKQGVRSA----ISQTGLVHIQIIRNRQFRRH 494 (499)
Q Consensus 458 ~~~~~~~v~~iDGik~~----~~d~~Wvlir~s~~~~~~~~ 494 (499)
+..+++++||+|+. ++| ||+|||||++.|-=|.
T Consensus 509 ---~~~~~~~~DGvkv~~~~~~~~-gWvLiRpS~TEP~iri 545 (583)
T PLN02371 509 ---LEGAPVNYEGVRVSDEGEGFG-GWFLLRQSLHDPVIPL 545 (583)
T ss_pred ---cccCccccceEEEEecccCCC-ceEEEEeCCCCceEEE
Confidence 11357889999998 765 8999999999986443
No 15
>cd05799 PGM2 This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2 is thought to be a phosphopentomutase that catalyzes the conversion of the nucleoside breakdown products, ribose-1-phosphate and deoxyribose-1-phosphate to the corresponding 5-phosphopentoses. PGM2L1 is thought to catalyze the 1,3-bisphosphoglycerate-dependent synthesis of glucose 1,6-bisphosphate and other aldose-bisphosphates that serve as cofactors for several sugar phosphomutases and possibly also as regulators of glycolytic enzymes. PGM2 and PGM2L1 belong to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/ph
Probab=100.00 E-value=4.6e-76 Score=629.84 Aligned_cols=407 Identities=22% Similarity=0.257 Sum_probs=345.9
Q ss_pred ccccchhhHHHHHhhC---CCceEEEeecCCcchHHHHHHHHHHHHHCCCeEEEeCCCc-ccchhHHHHHHHHcCCccce
Q psy5979 31 RYFGDVAVDKIIKISG---IRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNG-ILSTPAVSALIRKHQVTGGI 106 (499)
Q Consensus 31 ~~~~~~a~~~~~~~~~---~~~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~g-~~pTP~~~fav~~~~~~gGI 106 (499)
.+..|.|||+++++.+ .+++|+||||+|.+|++|+++++++|+++|++|+++ | .+|||+++|++++++++|||
T Consensus 25 ~~~l~~a~~~~l~~~~~~~~~~~V~Vg~D~R~~s~~~~~a~~~gL~s~Gi~V~~~---g~~~ptP~~~~~i~~~~~~gGI 101 (487)
T cd05799 25 VRQATQGLANYLKKKGPDAKNRGVVIGYDSRHNSREFAELTAAVLAANGIKVYLF---DDLRPTPLLSFAVRHLGADAGI 101 (487)
T ss_pred HHHHHHHHHHHHHHhcccccCCeEEEEcCCCCChHHHHHHHHHHHHHCCCEEEEe---CCCCCCcHHHHHHHHhCCCeeE
Confidence 4446889999998665 557899999999999999999999999999999999 7 99999999999999999999
Q ss_pred EEcCCCCCCCCCCCceeEEEcCCCCCCChhHHHHHHHHHHhhhccCcCCCcccccccccCccccccCCcceEEEe--CcH
Q psy5979 107 VLTASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITTQIKTYSIVPDLKVDITSIGSSSYEVDGAQFQVDVI--DSV 184 (499)
Q Consensus 107 ~ITaSHNP~~~~~~nGiK~~~~~G~~~~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~--d~~ 184 (499)
|||||||| ++||||||++++|.+++++.+++|++++.+.+++.+++ ......+|. ++.. +..
T Consensus 102 ~iTaSHnp---~~~nGiK~~~~~G~~~~~~~~~~Ie~~~~~~~~~~~~~--~~~~~~~g~-----------~~~~~~~~~ 165 (487)
T cd05799 102 MITASHNP---KEYNGYKVYWEDGAQIIPPHDAEIAEEIEAVLEPLDIK--FEEALDSGL-----------IKYIGEEID 165 (487)
T ss_pred EEEeeCCC---cccCCEEEecCCCCcCCCHHHHHHHHHHHhcccccccc--hhhhccCCc-----------eEEcchHHH
Confidence 99999999 89999999999999999999999999876533443210 011222332 3332 467
Q ss_pred HHHHHHHHhhcCchhH-HhhhcCCCCCCCcEEEEcCCCCCChHHHHHHHHHhcCCC-cc-eeeecccCCCCCC-CCCCCC
Q psy5979 185 EVYLQLMKEIFDFPKL-QSLIKGSSGRPPFKLLINAMHGVTGPYVKKIFLEELGAQ-PD-NAVNTTPLPDFGG-HHPDPN 260 (499)
Q Consensus 185 ~~Y~~~l~~~i~~~~i-~~~~~~~~~~~~lkVvvD~~~G~~~~~~~~il~~~lG~~-~~-~~v~~~~d~~F~~-~~p~P~ 260 (499)
+.|++.|++.++...+ ++ +++||++||+||+++.+++++| ++|||+ ++ ..++++|||+||+ +.|+|+
T Consensus 166 ~~Y~~~l~~~i~~~~~~~~--------~~~kVvvD~~~G~~~~~~~~il-~~LG~~~v~~~~~~~~~d~~F~~~~~p~p~ 236 (487)
T cd05799 166 DAYLEAVKKLLVNPELNEG--------KDLKIVYTPLHGVGGKFVPRAL-KEAGFTNVIVVEEQAEPDPDFPTVKFPNPE 236 (487)
T ss_pred HHHHHHHHhhhcccccccC--------CCCcEEEeCCCCccHHHHHHHH-HHcCCCCcEEeeeccCCCcCCCCCCCCCCC
Confidence 8999999999875433 32 6899999999999999999999 999999 42 2468999999998 689998
Q ss_pred c-ccHHHHHHHHHhCCCcEEEeeCCCCCeeEEEccC----ceEeCCCcHHHHHHHHHhcCchhhh-----cCccceeeec
Q psy5979 261 L-TYAADLVQAMQAGDFDLGAAFDGDGDRNMVLGKK----AFFVNPSDSLAVLAAHLDSIPYFKK-----TGVKGYARSM 330 (499)
Q Consensus 261 ~-~~l~~l~~~v~~~~adlgia~D~DgDRl~vvd~~----G~~l~~d~~~~lla~~ll~~~~~~~-----~~~~~vv~~~ 330 (499)
. +++.++.+.|++.++|+|+++||||||++++|++ |+++++|++++|++.++++. +. .+...||.|+
T Consensus 237 ~~~~l~~l~~~v~~~~ad~Gia~D~DgDR~~vvd~~~~~~g~~~~~d~l~aL~a~~ll~~---~~~~~~~~~~~~vV~~v 313 (487)
T cd05799 237 EPGALDLAIELAKKVGADLILATDPDADRLGVAVKDKDGEWRLLTGNEIGALLADYLLEQ---RKEKGKLPKNPVIVKTI 313 (487)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeCCCCCeEEEEEEcCCCCEEEECHHHHHHHHHHHHHHh---HhhccCCCCCcEEEEee
Confidence 4 7889999999999999999999999999999954 78999999999999998863 11 1323599999
Q ss_pred cchHHHHHHHHHCCCcEEEeecchhHHhhhhhcc-----CceEEEEecCCC-CCCCccCCchHHHHHHHHHHHHH---cC
Q psy5979 331 PTGAAVDRVAKANNKELFEVPTGWKYFGNLMDAG-----RLSLCGEESFGT-GSDHIREKDGIWAVLAWLSVVEH---TG 401 (499)
Q Consensus 331 ~ss~~l~~ia~~~g~~v~~t~tG~k~i~~~~~~~-----~~~~g~Eesgg~-~~~~~~~~Dgi~a~l~lle~la~---~~ 401 (499)
+||++++++|+++|++++||||||+||+++|.+. +++||||||||+ +++|.+++||++++++++|+|+. ++
T Consensus 314 ~sS~~i~~ia~~~g~~v~~t~~G~~~i~~~m~~~~~~~~~~~~ggE~sgg~~~~~~~~~~Dgi~a~~~lle~la~~~~~~ 393 (487)
T cd05799 314 VSSELLRKIAKKYGVKVEETLTGFKWIGNKIEELESGGKKFLFGFEESIGYLVGPFVRDKDGISAAALLAEMAAYLKAQG 393 (487)
T ss_pred hhHHHHHHHHHHcCCeEEECCCCchHHHHHHHHHhccCceEEEEEeccceeeeCCCCCCchHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999864 689999999997 78999999999999999999995 89
Q ss_pred CCHHHHHHHHHHHhCCceEeeeccccC---CchhH-HHHHHHHHhhcCCCCcccccccCCCCcceecccCCCeEEEEeeC
Q psy5979 402 KPVEEILKSHWKQYGRNYFTRYDYENC---SAAPC-NQMMDELEKKVSAPEFKGVTLSAEGRSGSWWRQEKQGVRSAISQ 477 (499)
Q Consensus 402 ~~L~ell~~lp~~~g~~~~~~~~~~~~---~~~~k-~~vm~~l~~~~~~~~~~g~~~~~~~~~~~~~v~~iDGik~~~~d 477 (499)
++|+++++++|++||++++.+.++ .| +|..+ +++|++|.+ . . ||+|+.|+|
T Consensus 394 ~~Ls~l~~~l~~~y~~~~~~~~~i-~~~~~~~~~~~~~v~~~l~~---~-----------------~----DGvki~~~d 448 (487)
T cd05799 394 KTLLDRLDELYEKYGYYKEKTISI-TFEGKEGPEKIKAIMDRLRN---N-----------------P----NVLTFYLED 448 (487)
T ss_pred CCHHHHHHHHHHHhCceEEeeeeE-EEeCCCCHHHHHHHHHHHhc---c-----------------C----CEEEEEEcC
Confidence 999999999999999766555544 67 56555 778877642 1 1 999999998
Q ss_pred CeEEEEeecCCccccc
Q psy5979 478 TGLVHIQIIRNRQFRR 493 (499)
Q Consensus 478 ~~Wvlir~s~~~~~~~ 493 (499)
|+|+|||||++.|.=|
T Consensus 449 g~WvliRpS~teP~~r 464 (487)
T cd05799 449 GSRVTVRPSGTEPKIK 464 (487)
T ss_pred CEEEEEEcCCCCceEE
Confidence 7899999999998533
No 16
>COG1109 {ManB} Phosphomannomutase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.7e-76 Score=622.40 Aligned_cols=418 Identities=25% Similarity=0.357 Sum_probs=355.1
Q ss_pred CCCCCCeEEEeCCcccccchhhHHHHHhhCCCceEEEeecCCcchHHHHHHHHHHHHHCCCeEEEeCCCcccchhHHHHH
Q psy5979 17 DKLKGSVLVVGGDGRYFGDVAVDKIIKISGIRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSAL 96 (499)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~g~~pTP~~~fa 96 (499)
||+-|+.++. +..+..+.|+|+++++ +.+++|+||||+|.+|++|++++++||+++|++|+++ |.+|||+++|+
T Consensus 16 RG~~~~~lt~--~~~~~~g~a~~~~l~~-~~~~~VvVG~D~R~ss~~~~~a~~~gl~~~G~~v~~~---g~~pTP~~~f~ 89 (464)
T COG1109 16 RGVAGEELTP--EFALKLGRALGSVLRK-KGAPKVVVGRDTRLSSEMLAAALAAGLTSAGIDVYDL---GLVPTPAVAFA 89 (464)
T ss_pred ccccCCCcCH--HHHHHHHHHHHHHHhh-cCCCeEEEEecCCCCHHHHHHHHHHHHHHCCCeEEEe---CCCCCHHHHHH
Confidence 6777755555 5666678999999997 4448999999999999999999999999999999999 89999999999
Q ss_pred HHHcCCccceEEcCCCCCCCCCCCceeEEEcCCCCCCChhHHHHHHHHHHhhh-ccCcCCCcccccccccCccccccCCc
Q psy5979 97 IRKHQVTGGIVLTASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITTQIK-TYSIVPDLKVDITSIGSSSYEVDGAQ 175 (499)
Q Consensus 97 v~~~~~~gGI~ITaSHNP~~~~~~nGiK~~~~~G~~~~~~~~~~Ie~~~~~~~-~~~~~~~~~~~~~~ig~~~~~~~~~~ 175 (499)
++++++++|||||||||| ++|||||+++++|.+++++.+++|++.+.. + .+. ...+..+|
T Consensus 90 ~~~~~~~~gvmITASHNP---~~yNGiK~~~~~G~~i~~~~e~~Ie~~~~~-~~~~~-----~~~~~~~g---------- 150 (464)
T COG1109 90 TRKLGADAGVMITASHNP---PEYNGIKFFGSDGGKISDDIEEEIEAILAE-EVDLP-----RPSWGELG---------- 150 (464)
T ss_pred HHhcCCCeEEEEecCCCC---chhCcEEEEcCCCCcCChHHHHHHHHHHhc-ccccc-----ccccccCC----------
Confidence 999999999999999999 899999999999999999999999887764 2 221 11122233
Q ss_pred ceEEEeC-cHHHHHHHHHhhcCchhHHhhhcCCCCCCCcEEEEcCCCCCChHHHHHHHHHhcCCCcceeeecccCCCCCC
Q psy5979 176 FQVDVID-SVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINAMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGG 254 (499)
Q Consensus 176 ~~~~~~d-~~~~Y~~~l~~~i~~~~i~~~~~~~~~~~~lkVvvD~~~G~~~~~~~~il~~~lG~~~~~~v~~~~d~~F~~ 254 (499)
.+...+ ..+.|++.+++.++.+ +. .+++||++||+||+++.+++++| ++|||+++ .+++.|||.||+
T Consensus 151 -~~~~~~~~~~~Y~~~i~~~~~~~-~~--------~~~lkVv~d~~nGaa~~~~~~ll-~~lG~~vv-~~~~~pDg~fp~ 218 (464)
T COG1109 151 -RLKRIPDALDRYIEFIKSLVDVD-LK--------LRGLKVVVDCANGAAGLVAPRLL-KELGAEVV-SINCDPDGLFPN 218 (464)
T ss_pred -ceeEcchhHHHHHHHHHHhcccc-cc--------cCCcEEEEECCCCchhHHHHHHH-HHcCCEEE-EecCCCCCCCCC
Confidence 245555 7899999999998754 22 25799999999999999999999 99999987 599999999999
Q ss_pred CCCCCCcccHHHHHHHHHhCCCcEEEeeCCCCCeeEEEccCceEeCCCcHHHHHHHHHhcCchhhhcCccceeeeccchH
Q psy5979 255 HHPDPNLTYAADLVQAMQAGDFDLGAAFDGDGDRNMVLGKKAFFVNPSDSLAVLAAHLDSIPYFKKTGVKGYARSMPTGA 334 (499)
Q Consensus 255 ~~p~P~~~~l~~l~~~v~~~~adlgia~D~DgDRl~vvd~~G~~l~~d~~~~lla~~ll~~~~~~~~~~~~vv~~~~ss~ 334 (499)
+.|+|.++.+.+|.+.+++.+||+|++|||||||++++|++|+++++|++++|++.++++. .... .||.|+.||.
T Consensus 219 ~~p~p~~~~~~~l~~~v~~~~aDlgia~DgDaDR~~~vd~~G~~~~Gd~i~~lla~~l~~~----~~~~-~vV~tv~ss~ 293 (464)
T COG1109 219 INPNPGETELLDLAKAVKEHGADLGIAFDGDADRLIVVDERGNFVDGDQILALLAKYLLEK----GKLP-TVVTTVMSSL 293 (464)
T ss_pred CCCCCCCccHHHHHHHHHhcCCCEEEEecCCCceEEEEcCCCCEeCccHHHHHHHHHHHhc----CCCC-eEEEecccch
Confidence 8899999988899999998899999999999999999999999999999999999999853 1111 6999999999
Q ss_pred HHHHHHHHCCCcEEEeecchhHHhhhhhccCceEEEEecCCC-CCCCccCCchHHHHHHHHHHHHHcCCCHHHHHHH-HH
Q psy5979 335 AVDRVAKANNKELFEVPTGWKYFGNLMDAGRLSLCGEESFGT-GSDHIREKDGIWAVLAWLSVVEHTGKPVEEILKS-HW 412 (499)
Q Consensus 335 ~l~~ia~~~g~~v~~t~tG~k~i~~~~~~~~~~~g~Eesgg~-~~~~~~~~Dgi~a~l~lle~la~~~~~L~ell~~-lp 412 (499)
+++++++.+|+++++|+|||+||+++|++.+++||||+|||+ ++.+.+++||++++++++|+++..+++|+++++. +|
T Consensus 294 ~~~~i~~~~g~~~~~t~vG~~~i~~~~~~~~~~~g~E~sg~~~~~~~~~~~Dgi~aal~ilel~~~~~~~lsel~~~~~~ 373 (464)
T COG1109 294 ALEKIAKKLGGKVVRTKVGDKYIAEKMRENGAVFGGEESGHIIFPDHVRTGDGLLAALLVLELLAESGKSLSELLAELLP 373 (464)
T ss_pred hHHHHHHHcCCeEEEecCchHHHHHHHHhcCCeEEEcccCCEEECCCCcCCcHHHHHHHHHHHHHHhCCCHHHHHHhhcc
Confidence 999999999999999999999999999999999999999997 6899999999999999999999999999999999 66
Q ss_pred HHhCCceEeeeccccCCchhHHHHHHHHHhhcCCCCcccccccCCCCcceecccCCCeEEEEeeCCeEE-EEeecCCccc
Q psy5979 413 KQYGRNYFTRYDYENCSAAPCNQMMDELEKKVSAPEFKGVTLSAEGRSGSWWRQEKQGVRSAISQTGLV-HIQIIRNRQF 491 (499)
Q Consensus 413 ~~~g~~~~~~~~~~~~~~~~k~~vm~~l~~~~~~~~~~g~~~~~~~~~~~~~v~~iDGik~~~~d~~Wv-lir~s~~~~~ 491 (499)
+.|+. ...+ +.|+.+.+..+|+++.++.... ..+..+||+|+.++| ||. |||||++.|.
T Consensus 374 ~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~idgv~~~~~~-g~~~lvRpSGTEP~ 433 (464)
T COG1109 374 KYPQS---VEIN-VRVTDEGKAEVLEKLLEELREA---------------KKVDTIDGVKVELED-GGRVLVRPSGTEPL 433 (464)
T ss_pred ccCCc---ceEe-EEEccchhhhHHHHHHHhCccc---------------ceeeeeeeEEEEeCC-CcEEEEEeCCCceE
Confidence 53331 2222 2455444436666766665320 257788999999998 454 9999999997
Q ss_pred cccee
Q psy5979 492 RRHVV 496 (499)
Q Consensus 492 ~~~~~ 496 (499)
=|.++
T Consensus 434 lrvy~ 438 (464)
T COG1109 434 IRVYV 438 (464)
T ss_pred EEEEE
Confidence 66554
No 17
>PTZ00150 phosphoglucomutase-2-like protein; Provisional
Probab=100.00 E-value=2.3e-75 Score=633.87 Aligned_cols=427 Identities=20% Similarity=0.247 Sum_probs=337.3
Q ss_pred chhhHHHHHhh-C---CCceEEEeecCCcchHHHHHHHHHHHHHCCCeEEEeCCCcccchhHHHHHHHHcCCccceEEcC
Q psy5979 35 DVAVDKIIKIS-G---IRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQVTGGIVLTA 110 (499)
Q Consensus 35 ~~a~~~~~~~~-~---~~~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~g~~pTP~~~fav~~~~~~gGI~ITa 110 (499)
+.|+|.++.+. + .+++|+||||+|.+|++|+++++++|+++|++|++++ +.+|||+++|++++++|+|||||||
T Consensus 72 ~~a~a~~l~~~~~~~~~~~~VvVg~D~R~~S~~fa~~~a~~L~a~Gi~V~~~g--~~~pTP~lsfav~~~~a~gGImITA 149 (584)
T PTZ00150 72 AQGLCAYVIETFGQALKSRGVVIGYDGRYHSRRFAEITASVFLSKGFKVYLFG--QTVPTPFVPYAVRKLKCLAGVMVTA 149 (584)
T ss_pred HHHHHHHHHHhcccccCCCcEEEEeCCCCCcHHHHHHHHHHHHHCCCEEEEeC--CCCCcHHHHHHHHHhCCCeEEEEec
Confidence 56889988643 2 2357999999999999999999999999999999992 3999999999999999999999999
Q ss_pred CCCCCCCCCCceeEEEcCCCCCCChhHHHHHHHHHHhhhccCcCCCcccccccccCccccccCCcceEEE-eCcHHHHHH
Q psy5979 111 SHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITTQIKTYSIVPDLKVDITSIGSSSYEVDGAQFQVDV-IDSVEVYLQ 189 (499)
Q Consensus 111 SHNP~~~~~~nGiK~~~~~G~~~~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~-~d~~~~Y~~ 189 (499)
|||| ++||||||++++|.++.++..++|++.+.. .+..++ ..+.+++. ...... .+..+.|++
T Consensus 150 SHNP---~eyNGiK~~~~~G~~i~~~~~~~i~~~Ie~--~~~~~~---~~~~~~~~--------~~~~~~~~d~~~~Yi~ 213 (584)
T PTZ00150 150 SHNP---KEDNGYKVYWSNGAQIIPPHDKNISAKILS--NLEPWS---SSWEYLTE--------TLVEDPLAEVSDAYFA 213 (584)
T ss_pred cCCC---CCCCCEEEeCCCCcccCCcccHHHHHHHHH--hccccc---cchhhhcc--------ccccchhhhhHHHHHH
Confidence 9999 899999999999999876655556554332 111000 01111110 000111 245788999
Q ss_pred HHHhhcCchhHHhhhcCCCCCCCcEEEEcCCCCCChHHHHHHHHHhcCCCcc--eeeecccCCCCCC-CCCCCC--cccH
Q psy5979 190 LMKEIFDFPKLQSLIKGSSGRPPFKLLINAMHGVTGPYVKKIFLEELGAQPD--NAVNTTPLPDFGG-HHPDPN--LTYA 264 (499)
Q Consensus 190 ~l~~~i~~~~i~~~~~~~~~~~~lkVvvD~~~G~~~~~~~~il~~~lG~~~~--~~v~~~~d~~F~~-~~p~P~--~~~l 264 (499)
.+++.++.+.|++ +++|||+||+||+++.+++++| +++||+.+ ..+++.|||+||+ ..|+|+ ++++
T Consensus 214 ~l~~~i~~~~i~~--------~~lkIv~d~~~G~g~~~~~~iL-~~lG~~~~~~v~~~~~pDg~Fp~~~~PnPe~~~~~l 284 (584)
T PTZ00150 214 TLKSEYNPACCDR--------SKVKIVYTAMHGVGTRFVQKAL-HTVGLPNLLSVAQQAEPDPEFPTVTFPNPEEGKGAL 284 (584)
T ss_pred HHHhhcChhhhcc--------CCCeEEEeCCCCccHHHHHHHH-HhcCCCCceEeccccccCcCCCCCCCcChhhhHHHH
Confidence 9998887654543 5899999999999999999999 99999732 2468899999998 468886 3678
Q ss_pred HHHHHHHHhCCCcEEEeeCCCCCeeEEEccCc---eEeCCCcHHHHHHHHHhcCchhhhc----CccceeeeccchHHHH
Q psy5979 265 ADLVQAMQAGDFDLGAAFDGDGDRNMVLGKKA---FFVNPSDSLAVLAAHLDSIPYFKKT----GVKGYARSMPTGAAVD 337 (499)
Q Consensus 265 ~~l~~~v~~~~adlgia~D~DgDRl~vvd~~G---~~l~~d~~~~lla~~ll~~~~~~~~----~~~~vv~~~~ss~~l~ 337 (499)
..+.+.+++.+||+||++||||||++++|+.| +++++|++++|+++|+++.. +.. +...||.|++||.+++
T Consensus 285 ~~~~~~v~~~~adlgia~DpDaDR~~vvd~~g~~~~~l~gd~l~aLla~~ll~~~--~~~g~~~~~~~Vv~tv~sS~~l~ 362 (584)
T PTZ00150 285 KLSMETAEAHGSTVVLANDPDADRLAVAEKLNNGWKIFTGNELGALLAWWAMKRY--RRQGIDKSKCFFICTVVSSRMLK 362 (584)
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCceEEEEEcCCceEEcChhHHHHHHHHHHHHhh--hhcCCCCCCcEEEEehhhhHHHH
Confidence 88889999999999999999999999998765 79999999999999998631 111 1124999999999999
Q ss_pred HHHHHCCCcEEEeecchhHHhhhhhc-----c-CceEEEEecCCC-CCCCccCCchHHHHHHHHHH---HHHcCCCHHHH
Q psy5979 338 RVAKANNKELFEVPTGWKYFGNLMDA-----G-RLSLCGEESFGT-GSDHIREKDGIWAVLAWLSV---VEHTGKPVEEI 407 (499)
Q Consensus 338 ~ia~~~g~~v~~t~tG~k~i~~~~~~-----~-~~~~g~Eesgg~-~~~~~~~~Dgi~a~l~lle~---la~~~~~L~el 407 (499)
++|+++|+++++|+||||||+++|.+ . +++||||||||+ +++|.+++|||+++++++|+ ++.+++||+++
T Consensus 363 ~ia~~~g~~v~~t~tGfk~I~~~m~~~~~~~~~~~~~ggEeSgG~~~~~~~~~kDgi~aal~ile~~~~l~~~g~sL~e~ 442 (584)
T PTZ00150 363 KMAEKEGFQYDETLTGFKWIGNKAIELNAENGLTTLFAYEEAIGFMLGTRVRDKDGVTAAAVVAEMALYLYERGKTLVEH 442 (584)
T ss_pred HHHHHcCCEEEECCCChHHHHHHHHHHHhcCCceEEEEEeccCcccCCCCCCCcHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 99999999999999999999999975 2 379999999998 78999999999999999999 78899999999
Q ss_pred HHHHHHHhCCceEeeeccccCCchhHHHHHHHHHhhc-CCCCcccccccC-CCC--cc-------eeccc---CCCeEEE
Q psy5979 408 LKSHWKQYGRNYFTRYDYENCSAAPCNQMMDELEKKV-SAPEFKGVTLSA-EGR--SG-------SWWRQ---EKQGVRS 473 (499)
Q Consensus 408 l~~lp~~~g~~~~~~~~~~~~~~~~k~~vm~~l~~~~-~~~~~~g~~~~~-~~~--~~-------~~~v~---~iDGik~ 473 (499)
+++||++||+++........+..+.+.++|++|++.. ....++|.++.. .+- ++ +..+. ..||+|+
T Consensus 443 l~~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~v~~~~d~~~~~~~~~~~~~~~lp~~~~~~~lk~ 522 (584)
T PTZ00150 443 LESLYKQYGYHFTNNSYYICYDPSRIVSIFNDIRNNGSYPTKLGGYPVTRIRDLTTGYDTATPDGKPLLPVSASTQMITF 522 (584)
T ss_pred HHHHHHHHCCCccceeeEecCCHHHHHHHHHHHhccCCcchhhCCeeEEEEEecccccccccCCCcccCCCcccCCeEEE
Confidence 9999999996554444333344566778999998721 113566665431 110 00 00111 4799999
Q ss_pred EeeCCeEEEEeecCCcc
Q psy5979 474 AISQTGLVHIQIIRNRQ 490 (499)
Q Consensus 474 ~~~d~~Wvlir~s~~~~ 490 (499)
.|+||+|+++||||+.|
T Consensus 523 ~~~~g~~~~~RpSGTEP 539 (584)
T PTZ00150 523 YFENGAIITIRGSGTEP 539 (584)
T ss_pred EEcCCeEEEEEcCCCCC
Confidence 99999999999999998
No 18
>PRK14317 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=2.3e-75 Score=620.15 Aligned_cols=400 Identities=19% Similarity=0.237 Sum_probs=336.0
Q ss_pred CcccccchhhHHHHHhh-CCCceEEEeecCCcchHHHHHHHHHHHHHCCCeEEEeCCCcccchhHHHHHHHHcCCccceE
Q psy5979 29 DGRYFGDVAVDKIIKIS-GIRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQVTGGIV 107 (499)
Q Consensus 29 ~~~~~~~~a~~~~~~~~-~~~~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~g~~pTP~~~fav~~~~~~gGI~ 107 (499)
+-.+-.|.|||+++++. +.+++|+||||+|.+|++|++++++||+++|++|+++ |.+|||+++|++++++++||||
T Consensus 35 e~a~~lg~a~g~~l~~~~~~~~~VvVG~D~R~ss~~l~~a~~~gL~s~Gv~V~~~---g~~pTP~~~~av~~~~~~gGI~ 111 (465)
T PRK14317 35 PLALQVGFWAGQVLRQTAPGEGPVLIGQDSRNSSDMLAMALAAGLTAAGREVWHL---GLCPTPAVAYLTRKSEAIGGLM 111 (465)
T ss_pred HHHHHHHHHHHHHHHhccCCCCcEEEEECCCCCHHHHHHHHHHHHHHCCCeEEEe---cccCcHHHHHHHHhcCCCEEEE
Confidence 33334478899999654 3567799999999999999999999999999999998 8999999999999999999999
Q ss_pred EcCCCCCCCCCCCceeEEEcCCCCCCChhHHHHHHHHHHhhhccCcCCCcccccccccCccccccCCcceEEE-eCcHHH
Q psy5979 108 LTASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITTQIKTYSIVPDLKVDITSIGSSSYEVDGAQFQVDV-IDSVEV 186 (499)
Q Consensus 108 ITaSHNP~~~~~~nGiK~~~~~G~~~~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~-~d~~~~ 186 (499)
||||||| ++||||||++++|.+++++.+++||+.+.+ +.+.+. .++.+|. ... .+..+.
T Consensus 112 ITaSHnP---~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~-~~~~~~-----~~~~~g~-----------~~~~~~~~~~ 171 (465)
T PRK14317 112 ISASHNP---PEDNGIKFFGADGTKLSPELQAQIEAGLRG-ELSSSD-----NASNWGR-----------HYHRPELLDD 171 (465)
T ss_pred EeCCCCC---cccCCEEEEcCCCCcCCHHHHHHHHHHHhc-cccccc-----chhcCCc-----------eEecCChHHH
Confidence 9999999 899999999999999999999999988764 333211 1223332 222 367899
Q ss_pred HHHHHHhhcCchhHHhhhcCCCCCCCcEEEEcCCCCCChHHHHHHHHHhcCCCcceeeecccCCCCCCCCCCCCcccHHH
Q psy5979 187 YLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINAMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDPNLTYAAD 266 (499)
Q Consensus 187 Y~~~l~~~i~~~~i~~~~~~~~~~~~lkVvvD~~~G~~~~~~~~il~~~lG~~~~~~v~~~~d~~F~~~~p~P~~~~l~~ 266 (499)
|++.+++.++.. |+. +++|||+||+||+++.+++++| ++|||+++ .+|++|||.|+ +|+|.++++.+
T Consensus 172 Y~~~l~~~id~~-i~~--------~~~kVvvD~~nG~~~~~~~~ll-~~LG~~v~-~l~~~~dg~~~--~~~~~~~~l~~ 238 (465)
T PRK14317 172 YRDALLESLPDR-VNL--------QGVKIVLDLAWGAAVACAPEVF-KALGAEVI-CLHDQPDGDRI--NVNCGSTHLEP 238 (465)
T ss_pred HHHHHHHhcCcc-ccc--------CCCEEEEECCCchHHHHHHHHH-HHcCCeEE-EEecccCCCCC--CCCCchHhHHH
Confidence 999999988753 432 5899999999999999999999 99999987 69999999997 45555678999
Q ss_pred HHHHHHhCCCcEEEeeCCCCCeeEEEccCceEeCCCcHHHHHHHHHhcCchhhhcCccceeeeccchHHHHHHHHHCCCc
Q psy5979 267 LVQAMQAGDFDLGAAFDGDGDRNMVLGKKAFFVNPSDSLAVLAAHLDSIPYFKKTGVKGYARSMPTGAAVDRVAKANNKE 346 (499)
Q Consensus 267 l~~~v~~~~adlgia~D~DgDRl~vvd~~G~~l~~d~~~~lla~~ll~~~~~~~~~~~~vv~~~~ss~~l~~ia~~~g~~ 346 (499)
+.+.|++.+||+|+++||||||++++|++|+++++|++++|+++++++. +..+...||.|+.||.+++++++++|++
T Consensus 239 l~~~v~~~~adlGia~DgDgDR~~~vd~~G~~i~~d~l~~l~a~~ll~~---~~~~~~~VV~~v~ss~~~~~~~~~~g~~ 315 (465)
T PRK14317 239 LQAAVLEHGADMGFAFDGDADRVLAVDGQGRVVDGDHILYLWGSHLQEQ---NQLPDNLLVATVMSNLGFERAWQQRGGQ 315 (465)
T ss_pred HHHHHHhcCCCEEEEECCCCcEEEEECCCCCEEChhHHHHHHHHHHHHh---cCCCCCeEEEeeecchHHHHHHHHcCCe
Confidence 9999999999999999999999999999999999999999999999752 1112246999999999999999999999
Q ss_pred EEEeecchhHHhhhhhccCceEEEEecCCC-CCCCccCCchHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCceEe---e
Q psy5979 347 LFEVPTGWKYFGNLMDAGRLSLCGEESFGT-GSDHIREKDGIWAVLAWLSVVEHTGKPVEEILKSHWKQYGRNYFT---R 422 (499)
Q Consensus 347 v~~t~tG~k~i~~~~~~~~~~~g~Eesgg~-~~~~~~~~Dgi~a~l~lle~la~~~~~L~ell~~lp~~~g~~~~~---~ 422 (499)
+++||||++||+++|.+.+++||||+|||+ +++|.+++|||+++++++|+|+.++++|++++++++..||+.... .
T Consensus 316 v~~t~vG~~~i~~~m~~~~~~~ggE~sg~~~~~~~~~~~Dgi~a~l~ile~la~~~~~lsel~~~~~~~~p~~~~~~~~~ 395 (465)
T PRK14317 316 LERTAVGDQHVHAAMLETGAMLGGEQSGHILCHHHGLSGDGLLTALHLATLVHQSGVSLAELVDQSFQTYPQKLRNVRVE 395 (465)
T ss_pred EEEcCCchHHHHHHHHHcCcEeeccccceEEEeccccCCcHHHHHHHHHHHHHHhCCCHHHHHHhHHHhCCceEEEeecc
Confidence 999999999999999999999999999997 789999999999999999999999999999999998888853221 1
Q ss_pred eccccCCchhHHHHHHHHHhhcCCCCcccccccCCCCcceecccCCCeEEEEeeCCeEEEEeecCCcccccce
Q psy5979 423 YDYENCSAAPCNQMMDELEKKVSAPEFKGVTLSAEGRSGSWWRQEKQGVRSAISQTGLVHIQIIRNRQFRRHV 495 (499)
Q Consensus 423 ~~~~~~~~~~k~~vm~~l~~~~~~~~~~g~~~~~~~~~~~~~v~~iDGik~~~~d~~Wvlir~s~~~~~~~~~ 495 (499)
.....|+|+.++++|+.+.+. | +++. ++||+|||||++.|.=|..
T Consensus 396 ~~~~~~~~~~~~~~~~~i~~~-------------------------~-~~~~--~~gW~liRpS~TEP~irv~ 440 (465)
T PRK14317 396 DRDRRLNWQECEPLQQAIAQA-------------------------E-AAMG--DTGRVLVRASGTEPLIRVM 440 (465)
T ss_pred ccchhhhhhcChhHHHHHHHH-------------------------H-Hhhc--CCceEEEecCCCCCEEEEE
Confidence 122348888888888765421 1 1111 3489999999999965443
No 19
>PRK14315 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=3.9e-75 Score=615.99 Aligned_cols=408 Identities=21% Similarity=0.255 Sum_probs=334.0
Q ss_pred CCCCCCe-EEEeCCcccccchhhHHHHHhhCCCceEEEeecCCcchHHHHHHHHHHHHHCCCeEEEeCCCcccchhHHHH
Q psy5979 17 DKLKGSV-LVVGGDGRYFGDVAVDKIIKISGIRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSA 95 (499)
Q Consensus 17 ~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~g~~pTP~~~f 95 (499)
||..|.. ++- +-.+-.|.|||+++++.+.+++|+||||+|.+|++|++++++||+++|++|+++ |.+|||+++|
T Consensus 12 RG~~~~~~lt~--e~~~~lg~a~g~~l~~~~~~~~VvVg~D~R~ss~~l~~a~~~gL~s~G~~V~~~---g~~pTP~~~~ 86 (448)
T PRK14315 12 RGRANTFPMTA--ELALRVGQAAGLYFRRGDHRHRVVIGKDTRLSGYMIENALVAGFTSVGMDVLLL---GPIPTPAVAM 86 (448)
T ss_pred eecCCCCCCCH--HHHHHHHHHHHHhHhhcCCCceEEEEeCCCCCHHHHHHHHHHHHHHCCCeEEEe---CCcccHHHHH
Confidence 5544443 433 444556789999998533334899999999999999999999999999999998 9999999999
Q ss_pred HHHHcCCccceEEcCCCCCCCCCCCceeEEEcCCCCCCChhHHHHHHHHHHhhhccCcCCCcccccccccCccccccCCc
Q psy5979 96 LIRKHQVTGGIVLTASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITTQIKTYSIVPDLKVDITSIGSSSYEVDGAQ 175 (499)
Q Consensus 96 av~~~~~~gGI~ITaSHNP~~~~~~nGiK~~~~~G~~~~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~ 175 (499)
++++++++||||||||||| ++||||||++++|.+++++.+++|++++. +++.. + ++.++.+|.
T Consensus 87 a~~~~~~~gGi~ITaSHnP---~~~nGiK~~~~~G~~i~~~~~~~ie~~~~--~~~~~-~--~~~~~~~g~--------- 149 (448)
T PRK14315 87 LTRSMRADLGVMISASHNP---FEDNGIKLFGPDGFKLSDEIELEIEALLD--GDLDK-R--LAAPADIGR--------- 149 (448)
T ss_pred HHHhcCCCEEEEEEcCCCC---cccCCEEEECCCCCcCCHHHHHHHHHHHh--ccccc-c--ccccccCcc---------
Confidence 9999999999999999999 89999999999999999999999998873 44420 0 111223333
Q ss_pred ceEEEe-CcHHHHHHHHHhhcCchhHHhhhcCCCCCCCcEEEEcCCCCCChHHHHHHHHHhcCCCcceeeecccCCCCCC
Q psy5979 176 FQVDVI-DSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINAMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGG 254 (499)
Q Consensus 176 ~~~~~~-d~~~~Y~~~l~~~i~~~~i~~~~~~~~~~~~lkVvvD~~~G~~~~~~~~il~~~lG~~~~~~v~~~~d~~F~~ 254 (499)
+... +..+.|++.+++.+|.+ ++. +++|||+||+||+++.+++.+| ++|||+++ .+|++||+.||.
T Consensus 150 --~~~~~~~~~~Y~~~l~~~id~~-i~~--------~~lkVvvD~~~G~~~~~~~~ll-~~lG~~v~-~i~~~~dg~~~~ 216 (448)
T PRK14315 150 --AKRIDDAHGRYIEFAKRTLPRD-LRL--------DGLRVVVDCANGAAYKVAPEAL-WELGAEVI-TIGVEPNGFNIN 216 (448)
T ss_pred --eEEecchHHHHHHHHHHhcccc-ccc--------CCCEEEEECCCchHHHHHHHHH-HHcCCeEE-EeccCCCCCCCC
Confidence 3444 56789999999998743 442 6899999999999999999999 99999986 699999999974
Q ss_pred CCCCCCcccHHHHHHHHHhCCCcEEEeeCCCCCeeEEEccCceEeCCCcHHHHHHHHHhcCchhhhcCccceeeeccchH
Q psy5979 255 HHPDPNLTYAADLVQAMQAGDFDLGAAFDGDGDRNMVLGKKAFFVNPSDSLAVLAAHLDSIPYFKKTGVKGYARSMPTGA 334 (499)
Q Consensus 255 ~~p~P~~~~l~~l~~~v~~~~adlgia~D~DgDRl~vvd~~G~~l~~d~~~~lla~~ll~~~~~~~~~~~~vv~~~~ss~ 334 (499)
. +|.++++.++.+.|++.+||+||++||||||++++|++|+++++|++++|+++++++. ...+...||.|+.||.
T Consensus 217 ~--~~~~~~l~~l~~~v~~~~adlGia~DgDgDR~~ivd~~G~~i~~d~~~~l~a~~ll~~---~~~~~~~vV~~v~ss~ 291 (448)
T PRK14315 217 E--ECGSTHPEALAKKVREVRADIGIALDGDADRVIIVDEKGHVVDGDQLMALIAESWAED---GRLRGGGIVATVMSNL 291 (448)
T ss_pred C--CCCCCCHHHHHHHHHHcCCCEEEEEcCCCceEEEEcCCCcEeCHHHHHHHHHHHHHHh---CCCCCCeEEEEecCCh
Confidence 3 3334688899999999999999999999999999999999999999999999999853 1101236999999999
Q ss_pred HHHHHHHHCCCcEEEeecchhHHhhhhhccCceEEEEecCCC-CCCCccCCchHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q psy5979 335 AVDRVAKANNKELFEVPTGWKYFGNLMDAGRLSLCGEESFGT-GSDHIREKDGIWAVLAWLSVVEHTGKPVEEILKSHWK 413 (499)
Q Consensus 335 ~l~~ia~~~g~~v~~t~tG~k~i~~~~~~~~~~~g~Eesgg~-~~~~~~~~Dgi~a~l~lle~la~~~~~L~ell~~lp~ 413 (499)
+++++|+++|+++++|||||+||+++|.+.+++||||+|||+ +++|.+++|||++++++||+|++++++|+++++++|.
T Consensus 292 ~i~~~a~~~g~~v~~t~vG~~~i~~~m~~~~~~~ggE~sg~~~f~~~~~~~Dgi~a~l~lle~la~~~~~L~~l~~~~~~ 371 (448)
T PRK14315 292 GLERFLADRGLTLERTAVGDRYVVEHMREGGFNLGGEQSGHIVLSDYATTGDGLVAALQVLAVVVRSGRPASEVCRRFEP 371 (448)
T ss_pred HHHHHHHHcCCeEEEeCChHHHHHHHHHhCCCceeecccccEeecccCCCCcHHHHHHHHHHHHHHhCCCHHHHhhhcCc
Confidence 999999999999999999999999999999999999999997 7999999999999999999999999999999998874
Q ss_pred HhCCceEeeeccccCCchhHHHHHHHHHhhcCCCCcccccccCCCCcceecccCCCeEEEEeeCCeEEEEeecCCccccc
Q psy5979 414 QYGRNYFTRYDYENCSAAPCNQMMDELEKKVSAPEFKGVTLSAEGRSGSWWRQEKQGVRSAISQTGLVHIQIIRNRQFRR 493 (499)
Q Consensus 414 ~~g~~~~~~~~~~~~~~~~k~~vm~~l~~~~~~~~~~g~~~~~~~~~~~~~v~~iDGik~~~~d~~Wvlir~s~~~~~~~ 493 (499)
+++.. ..+.|+.. ++ +.++ ...+.+||+|+.++++||+|||||++.|.=|
T Consensus 372 ----~~~~~-~~~~~~~~---~~---~~~~-------------------~~~~~~~~~~~~~~~~gWvLiRpS~teP~ir 421 (448)
T PRK14315 372 ----VPQLL-KNVRYSGG---KP---LEDA-------------------SVKSAIADAEARLNGSGRLLIRPSGTEPLIR 421 (448)
T ss_pred ----CCeee-eEEecCCc---cc---CCCH-------------------HHHHHHHHHHHHhcCCcEEEEecCCCCcEEE
Confidence 22222 33467632 11 1100 0122356777666445899999999999644
Q ss_pred c
Q psy5979 494 H 494 (499)
Q Consensus 494 ~ 494 (499)
.
T Consensus 422 i 422 (448)
T PRK14315 422 V 422 (448)
T ss_pred E
Confidence 3
No 20
>cd05802 GlmM GlmM is a bacterial phosphoglucosamine mutase (PNGM) that belongs to the alpha-D-phosphohexomutase superfamily. It is required for the interconversion of glucosamine-6-phosphate and glucosamine-1-phosphate in the biosynthetic pathway of UDP-N-acetylglucosamine, an essential precursor to components of the cell envelope. In order to be active, GlmM must be phosphorylated, which can occur via autophosphorylation or by the Ser/Thr kinase StkP. GlmM functions in a classical ping-pong bi-bi mechanism with glucosamine-1,6-diphosphate as an intermediate. Other members of the alpha-D-phosphohexomutase superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=100.00 E-value=6.8e-75 Score=612.33 Aligned_cols=406 Identities=24% Similarity=0.308 Sum_probs=334.3
Q ss_pred CCCCCCeEEEeCCcccccchhhHHHHHhhCCCceEEEeecCCcchHHHHHHHHHHHHHCCCeEEEeCCCcccchhHHHHH
Q psy5979 17 DKLKGSVLVVGGDGRYFGDVAVDKIIKISGIRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSAL 96 (499)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~g~~pTP~~~fa 96 (499)
||.-+..++- +..+-.|.|||+++++.+.+++|+||||+|.+|++|++++++||+++|++|+++ |.+|||+++|+
T Consensus 8 RG~~~~~lt~--e~~~~lg~a~~~~l~~~~~~~~VvVg~D~R~ss~~l~~a~~~gL~s~G~~V~~~---g~~pTP~~~~a 82 (434)
T cd05802 8 RGVANEPLTP--ELALKLGRAAGKVLGKGGGRPKVLIGKDTRISGYMLESALAAGLTSAGVDVLLL---GVIPTPAVAYL 82 (434)
T ss_pred ceECCCCCCH--HHHHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHHCCCcEEEE---cccchHHHHHH
Confidence 4444443333 445556889999998544467899999999999999999999999999999999 99999999999
Q ss_pred HHHcCCccceEEcCCCCCCCCCCCceeEEEcCCCCCCChhHHHHHHHHHHhhhccCcCCCcccccccccCccccccCCcc
Q psy5979 97 IRKHQVTGGIVLTASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITTQIKTYSIVPDLKVDITSIGSSSYEVDGAQF 176 (499)
Q Consensus 97 v~~~~~~gGI~ITaSHNP~~~~~~nGiK~~~~~G~~~~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~ 176 (499)
+++++++||||||||||| ++||||||++++|.+++++.+++|++++.+ +.+.++ .++.+|+
T Consensus 83 v~~~~~~gGI~ITaSHnp---~~~nGiK~~~~~G~~i~~~~~~~i~~~~~~-~~~~~~-----~~~~~g~---------- 143 (434)
T cd05802 83 TRKLRADAGVVISASHNP---FEDNGIKFFSSDGYKLPDEVEEEIEALIDK-ELELPP-----TGEKIGR---------- 143 (434)
T ss_pred HHHhCCCeEEEEEecCCc---hhhCCEEEECCCCCcCCHHHHHHHHHHHhC-cccccc-----ccccCee----------
Confidence 999999999999999999 899999999999999999999999988765 444321 2233333
Q ss_pred eEEEe-CcHHHHHHHHHhhcCchhHHhhhcCCCCCCCcEEEEcCCCCCChHHHHHHHHHhcCCCcceeeecccCCCCCCC
Q psy5979 177 QVDVI-DSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINAMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGGH 255 (499)
Q Consensus 177 ~~~~~-d~~~~Y~~~l~~~i~~~~i~~~~~~~~~~~~lkVvvD~~~G~~~~~~~~il~~~lG~~~~~~v~~~~d~~F~~~ 255 (499)
+... +..+.|++.|.+.++.+. .+++|||+||+||+++.+++++| ++|||+++ .+|++||+.||..
T Consensus 144 -~~~~~~~~~~Y~~~l~~~~~~~~----------~~~lkVvvD~~nG~~~~~~~~ll-~~lg~~v~-~in~~~dg~~~~~ 210 (434)
T cd05802 144 -VYRIDDARGRYIEFLKSTFPKDL----------LSGLKIVLDCANGAAYKVAPEVF-RELGAEVI-VINNAPDGLNINV 210 (434)
T ss_pred -EEEccchHHHHHHHHHHhcCccc----------cCCCEEEEECCCchHHHHHHHHH-HHcCCeEE-EecCCCCCCCCCC
Confidence 3333 577899999999987532 15899999999999999999999 99999987 6999999999753
Q ss_pred CCCCCcccHHHHHHHHHhCCCcEEEeeCCCCCeeEEEccCceEeCCCcHHHHHHHHHhcCchhhhcCccceeeeccchHH
Q psy5979 256 HPDPNLTYAADLVQAMQAGDFDLGAAFDGDGDRNMVLGKKAFFVNPSDSLAVLAAHLDSIPYFKKTGVKGYARSMPTGAA 335 (499)
Q Consensus 256 ~p~P~~~~l~~l~~~v~~~~adlgia~D~DgDRl~vvd~~G~~l~~d~~~~lla~~ll~~~~~~~~~~~~vv~~~~ss~~ 335 (499)
+|.+++++++.+.|++.++|+|+++||||||++++|++|+++++|++++|+++++++. ...+...||.|+.||++
T Consensus 211 --~~~~~~~~~l~~~v~~~~adlGia~DgDgDR~~~vd~~G~~i~~d~~~~l~a~~l~~~---~~~~~~~vv~~v~ss~~ 285 (434)
T cd05802 211 --NCGSTHPESLQKAVLENGADLGIAFDGDADRVIAVDEKGNIVDGDQILAICARDLKER---GRLKGNTVVGTVMSNLG 285 (434)
T ss_pred --CCCccCHHHHHHHHHhcCCCEEEEEcCCCceEEEECCCCCEeCHHHHHHHHHHHHHHh---CCCCCCeEEEecCCcHH
Confidence 4445788999999999999999999999999999999999999999999999999753 10012469999999999
Q ss_pred HHHHHHHCCCcEEEeecchhHHhhhhhccCceEEEEecCCC-CCCCccCCchHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q psy5979 336 VDRVAKANNKELFEVPTGWKYFGNLMDAGRLSLCGEESFGT-GSDHIREKDGIWAVLAWLSVVEHTGKPVEEILKSHWKQ 414 (499)
Q Consensus 336 l~~ia~~~g~~v~~t~tG~k~i~~~~~~~~~~~g~Eesgg~-~~~~~~~~Dgi~a~l~lle~la~~~~~L~ell~~lp~~ 414 (499)
++++++++|+++++||||+++|+++|.+.+++||||+|||+ +++|.+++|||+++++++|+|++++++|+++++++|.
T Consensus 286 ~~~~~~~~g~~v~~~~~G~~~i~~~~~~~~~~~ggE~sG~~~f~~~~~~~Dgi~a~l~lle~la~~~~~ls~l~~~l~~- 364 (434)
T cd05802 286 LEKALKELGIKLVRTKVGDRYVLEEMLKHGANLGGEQSGHIIFLDHSTTGDGLLTALQLLAIMKRSGKSLSELASDMKL- 364 (434)
T ss_pred HHHHHHHcCCeEEEEcChHHHHHHHHHhcCCEEEEecCCCEEecCcCCCCcHHHHHHHHHHHHHHhCCCHHHHHhhccc-
Confidence 99999999999999999999999999999999999999997 7999999999999999999999999999999999874
Q ss_pred hCCceEeeeccccCCchhHHHHHHHHHhhcCCCCcccccccCCCCcceecccCCCeEEEEeeCCeEEEEeecCCccccc
Q psy5979 415 YGRNYFTRYDYENCSAAPCNQMMDELEKKVSAPEFKGVTLSAEGRSGSWWRQEKQGVRSAISQTGLVHIQIIRNRQFRR 493 (499)
Q Consensus 415 ~g~~~~~~~~~~~~~~~~k~~vm~~l~~~~~~~~~~g~~~~~~~~~~~~~v~~iDGik~~~~d~~Wvlir~s~~~~~~~ 493 (499)
|+ +.+.+. . |+.++++|.. .+ . .+.+||+++.++++||+|||||++.|.=|
T Consensus 365 ~~---~~~~~v-~--~~~~~~~~~~-~~-~--------------------~~~~~~~~~~~~~~gW~liRpS~tep~ir 415 (434)
T cd05802 365 YP---QVLVNV-R--VKDKKALLEN-PR-V--------------------QAAIAEAEKELGGEGRVLVRPSGTEPLIR 415 (434)
T ss_pred cC---eeeEEE-E--eCCccccccC-HH-H--------------------HHHHHHHHHhhCCCeEEEEecCCCCcEEE
Confidence 22 233322 3 3334444310 10 1 11245566655445899999999998643
No 21
>PRK10887 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=5.8e-74 Score=606.19 Aligned_cols=392 Identities=24% Similarity=0.263 Sum_probs=329.9
Q ss_pred CcccccchhhHHHHHhhCCCceEEEeecCCcchHHHHHHHHHHHHHCCCeEEEeCCCcccchhHHHHHHHHcCCccceEE
Q psy5979 29 DGRYFGDVAVDKIIKISGIRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQVTGGIVL 108 (499)
Q Consensus 29 ~~~~~~~~a~~~~~~~~~~~~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~g~~pTP~~~fav~~~~~~gGI~I 108 (499)
+-.+-.|.|||+++++. .+++|+||||+|.+|++|++++++||+++|++|+++ |.+|||+++|++++++|+|||||
T Consensus 21 e~~~~lg~a~a~~l~~~-~~~~VvVg~D~R~ss~~l~~a~~~gL~s~Gv~V~~~---g~~pTP~~~~a~~~~~~~gGI~I 96 (443)
T PRK10887 21 DFVLKLGWAAGKVLARQ-GRPKVLIGKDTRISGYMLESALEAGLAAAGVDVLLT---GPMPTPAVAYLTRTLRAEAGIVI 96 (443)
T ss_pred HHHHHHHHHHHHHHHhC-CCCcEEEEeCCCCCHHHHHHHHHHHHHHCCCeEEEE---CCcChHHHHHHHHHcCCCEEEEE
Confidence 44555678999999853 236799999999999999999999999999999999 99999999999999999999999
Q ss_pred cCCCCCCCCCCCceeEEEcCCCCCCChhHHHHHHHHHHhhhccCcCCCcccccccccCccccccCCcceEEEe-CcHHHH
Q psy5979 109 TASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITTQIKTYSIVPDLKVDITSIGSSSYEVDGAQFQVDVI-DSVEVY 187 (499)
Q Consensus 109 TaSHNP~~~~~~nGiK~~~~~G~~~~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~-d~~~~Y 187 (499)
|||||| ++||||||++++|.+++++.+++|++++. +.+.++ ....+|. +... +..+.|
T Consensus 97 TaShnp---~~~ngiK~~~~~G~~i~~~~~~~ie~~~~--~~~~~~-----~~~~~g~-----------~~~~~~~~~~Y 155 (443)
T PRK10887 97 SASHNP---YYDNGIKFFSADGTKLPDEVELAIEAELD--KPLTCV-----ESAELGK-----------ASRINDAAGRY 155 (443)
T ss_pred ecCCCC---cccCeEEEECCCCCCCCHHHHHHHHHHHh--CcCCcc-----ccccCce-----------EEEcCChHHHH
Confidence 999999 89999999999999999999999998763 344322 1222332 3333 567889
Q ss_pred HHHHHhhcCchhHHhhhcCCCCCCCcEEEEcCCCCCChHHHHHHHHHhcCCCcceeeecccCCCCCCCCCCCCcccHHHH
Q psy5979 188 LQLMKEIFDFPKLQSLIKGSSGRPPFKLLINAMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDPNLTYAADL 267 (499)
Q Consensus 188 ~~~l~~~i~~~~i~~~~~~~~~~~~lkVvvD~~~G~~~~~~~~il~~~lG~~~~~~v~~~~d~~F~~~~p~P~~~~l~~l 267 (499)
++++++.+|. .++. +++|||+||+||+++.+++++| ++|||+++ .+|++|||+||. |+|.++++.++
T Consensus 156 ~~~l~~~id~-~i~~--------~~~kVvvD~~~G~~~~~~~~ll-~~lG~~v~-~~n~~~dg~~~~--~~~~~~~l~~l 222 (443)
T PRK10887 156 IEFCKSTFPN-ELSL--------RGLKIVVDCANGATYHIAPNVF-RELGAEVI-AIGCEPNGLNIN--DECGATDPEAL 222 (443)
T ss_pred HHHHHHhcCc-cccc--------CCCEEEEECCCchHHHHHHHHH-HHhCCeEE-EEeccCCCCCCC--CCCCCCCHHHH
Confidence 9999998874 2332 6899999999999999999999 99999987 699999999974 44445789999
Q ss_pred HHHHHhCCCcEEEeeCCCCCeeEEEccCceEeCCCcHHHHHHHHHhcCchhhhcCccceeeeccchHHHHHHHHHCCCcE
Q psy5979 268 VQAMQAGDFDLGAAFDGDGDRNMVLGKKAFFVNPSDSLAVLAAHLDSIPYFKKTGVKGYARSMPTGAAVDRVAKANNKEL 347 (499)
Q Consensus 268 ~~~v~~~~adlgia~D~DgDRl~vvd~~G~~l~~d~~~~lla~~ll~~~~~~~~~~~~vv~~~~ss~~l~~ia~~~g~~v 347 (499)
.+.|++.+||+|+++||||||++++|++|+++++|++++|++.++++. .+....||.|++||.+++++|+++|+++
T Consensus 223 ~~~v~~~~adlGia~D~DgDRl~~vd~~G~~i~~d~l~~l~~~~ll~~----~~~~~~vv~~v~ss~~~~~~a~~~g~~v 298 (443)
T PRK10887 223 QAAVLAEKADLGIAFDGDGDRVIMVDHLGNLVDGDQLLYIIARDRLRR----GQLRGGVVGTLMSNMGLELALKQLGIPF 298 (443)
T ss_pred HHHHHhcCCCeeeEECCCCceEEEECCCCcEeCHHHHHHHHHHHHHHh----CCCCCcEEEEeccchHHHHHHHHcCCcE
Confidence 999999999999999999999999999999999999999999999863 1112369999999999999999999999
Q ss_pred EEeecchhHHhhhhhccCceEEEEecCCC-CCCCccCCchHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCceEeeeccc
Q psy5979 348 FEVPTGWKYFGNLMDAGRLSLCGEESFGT-GSDHIREKDGIWAVLAWLSVVEHTGKPVEEILKSHWKQYGRNYFTRYDYE 426 (499)
Q Consensus 348 ~~t~tG~k~i~~~~~~~~~~~g~Eesgg~-~~~~~~~~Dgi~a~l~lle~la~~~~~L~ell~~lp~~~g~~~~~~~~~~ 426 (499)
++||||++||+++|.+.+++||||+|||+ +++|.+++|||++++++||+|++++++|+++++++|. +++.+. .+
T Consensus 299 ~~t~vG~~~i~~~m~~~~~~~ggE~sg~~~~~~~~~~~Dgi~a~l~ile~la~~~~~Ls~l~~~~~~----~~~~~~-~v 373 (443)
T PRK10887 299 VRAKVGDRYVLEKLQEKGWRLGGENSGHILCLDKTTTGDGIVAALQVLAAMVRSGMSLADLCSGMKL----FPQVLI-NV 373 (443)
T ss_pred EEcCCchHHHHHHHHhcCcEEEEecccceeccCccccCcHHHHHHHHHHHHHHhCCCHHHHHhhccc----ccceEE-EE
Confidence 99999999999999998999999999997 7899999999999999999999999999999999885 233333 33
Q ss_pred cCC----chhHHHHHHHHHhhcCCCCcccccccCCCCcceecccCCCeEEEEeeCCeEEEEeecCCcccccc
Q psy5979 427 NCS----AAPCNQMMDELEKKVSAPEFKGVTLSAEGRSGSWWRQEKQGVRSAISQTGLVHIQIIRNRQFRRH 494 (499)
Q Consensus 427 ~~~----~~~k~~vm~~l~~~~~~~~~~g~~~~~~~~~~~~~v~~iDGik~~~~d~~Wvlir~s~~~~~~~~ 494 (499)
.|+ |+.+++.|++..+.. . +++ +++||+|||||++.|.=|.
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~-------------------~------~~~--~~dgWvLiRpS~tEP~iri 418 (443)
T PRK10887 374 RFKPGADDPLESEAVKAALAEV-------------------E------AEL--GGRGRVLLRKSGTEPLIRV 418 (443)
T ss_pred EeccccccccchHHHHHHHHHH-------------------H------HHh--CCCeEEEEecCCCCeEEEE
Confidence 576 665666666543321 1 111 2348999999999996443
No 22
>PRK14324 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=4.1e-74 Score=607.15 Aligned_cols=361 Identities=24% Similarity=0.277 Sum_probs=307.5
Q ss_pred CCCCCCeEEEeCCcccccchhhHHHHHhhCCCceEEEeecCCcchHHHHHHHHHHHHHCCCeEEEeCCCcccchhHHHHH
Q psy5979 17 DKLKGSVLVVGGDGRYFGDVAVDKIIKISGIRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSAL 96 (499)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~g~~pTP~~~fa 96 (499)
||.-|..++- +..+-.|.|||+++++.+..++|+||||+|.+|++|++++++||+++|++|+++ |.+|||+++|+
T Consensus 10 RG~~~~~lt~--~~~~~lg~a~g~~l~~~~~~~~V~Vg~D~R~ss~~l~~a~~~gL~s~G~~V~~~---g~~pTP~~~~a 84 (446)
T PRK14324 10 RGKAGEKLTA--FLAMRLAMAAGIYFKKHSITNKILVGKDTRRSGYMIENALVSGLTSVGYNVIQI---GPMPTPAIAFL 84 (446)
T ss_pred ceecCCCcCH--HHHHHHHHHHHHHHHhCCCCCeEEEEeCCCcCHHHHHHHHHHHHHHCCCeEEEe---cCccHHHHHHH
Confidence 5555554443 555556789999998554335799999999999999999999999999999998 89999999999
Q ss_pred HHHcCCccceEEcCCCCCCCCCCCceeEEEcCCCCCCChhHHHHHHHHHHhhhccCcCCCcccccccccCccccccCCcc
Q psy5979 97 IRKHQVTGGIVLTASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITTQIKTYSIVPDLKVDITSIGSSSYEVDGAQF 176 (499)
Q Consensus 97 v~~~~~~gGI~ITaSHNP~~~~~~nGiK~~~~~G~~~~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~ 176 (499)
++++++++|||||||||| ++||||||++++|.+++++.+++|++++.+ +++... .+.....+|.
T Consensus 85 ~~~~~~~gGI~ITaSHNP---~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~-~~~~~~--~~~~~~~~g~---------- 148 (446)
T PRK14324 85 TEDMRCDAGIMISASHNP---YYDNGIKFFDSYGNKLDEEEEKEIEEIFFD-EELIQS--SQKTGEEIGS---------- 148 (446)
T ss_pred HhhcCCceEEEEEcCCCC---hhHCCEEEECCCCCCCCHHHHHHHHHHHhc-cccccc--cccchhhCee----------
Confidence 999999999999999999 899999999999999999999999988764 443100 0001122232
Q ss_pred eEEEe-CcHHHHHHHHHhhcCchhHHhhhcCCCCCCCcEEEEcCCCCCChHHHHHHHHHhcCCCcceeeecccCCCCCCC
Q psy5979 177 QVDVI-DSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINAMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGGH 255 (499)
Q Consensus 177 ~~~~~-d~~~~Y~~~l~~~i~~~~i~~~~~~~~~~~~lkVvvD~~~G~~~~~~~~il~~~lG~~~~~~v~~~~d~~F~~~ 255 (499)
++.. +..+.|+++|++.++.+ ++ .+++|||+||+||+++.+++.+| ++|||+++ .+|+.|||+||..
T Consensus 149 -~~~~~~~~~~Y~~~l~~~i~~~-~~--------~~~lkVvvD~~nGa~~~~~~~ll-~~lG~~v~-~i~~~~dg~~~~~ 216 (446)
T PRK14324 149 -AKRIDDVIGRYIVHIKNSFPKD-LT--------LKGLRIVLDTANGAAYKVAPTVF-SELGADVI-VINDEPNGFNINE 216 (446)
T ss_pred -eEecccHHHHHHHHHHHhcCCc-cC--------CCCCEEEEECCCchHHHHHHHHH-HHcCCeEE-EECCCCCCCCCCC
Confidence 3334 56789999999988633 22 15899999999999999999999 99999987 6999999999854
Q ss_pred CCCCCcccHHHHHHHHHhCCCcEEEeeCCCCCeeEEEccCceEeCCCcHHHHHHHHHhcCchhhhcCccceeeeccchHH
Q psy5979 256 HPDPNLTYAADLVQAMQAGDFDLGAAFDGDGDRNMVLGKKAFFVNPSDSLAVLAAHLDSIPYFKKTGVKGYARSMPTGAA 335 (499)
Q Consensus 256 ~p~P~~~~l~~l~~~v~~~~adlgia~D~DgDRl~vvd~~G~~l~~d~~~~lla~~ll~~~~~~~~~~~~vv~~~~ss~~ 335 (499)
. |.++++++|++.|++.+||+||++||||||++++|++|+++++|++++|+++++++. ...+...||.|+.||++
T Consensus 217 ~--~~~~~~e~l~~~v~~~~adlGia~DgDgDR~~vvd~~G~~l~~d~~~~l~a~~ll~~---~~~~~~~VV~~v~ss~~ 291 (446)
T PRK14324 217 N--CGALHPENLAQEVKRYRADIGFAFDGDADRLVVVDEKGEIVHGDKLLGVLAVYLKEK---GALKSQAIVATVMSNLA 291 (446)
T ss_pred C--CCCCCHHHHHHHHHhCCCCEEEEECCCCceEEEECCCCCEeCHHHHHHHHHHHHHHh---CCCCCCeEEEEecCChH
Confidence 3 344567789999999999999999999999999999999999999999999999753 10012369999999999
Q ss_pred HHHHHHHCCCcEEEeecchhHHhhhhhccCceEEEEecCCC-CCCCccCCchHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q psy5979 336 VDRVAKANNKELFEVPTGWKYFGNLMDAGRLSLCGEESFGT-GSDHIREKDGIWAVLAWLSVVEHTGKPVEEILKSHWKQ 414 (499)
Q Consensus 336 l~~ia~~~g~~v~~t~tG~k~i~~~~~~~~~~~g~Eesgg~-~~~~~~~~Dgi~a~l~lle~la~~~~~L~ell~~lp~~ 414 (499)
++++|+++|+++++|||||+||+++|.+.+++||||+|||+ +++|.+++|||++++++||+|++++++|+++++++|.
T Consensus 292 l~~ia~~~g~~v~~t~vG~~~i~~~m~~~~~~~ggE~sG~~~~~~~~~~~Dgi~a~l~lle~la~~~~~ls~l~~~~~~- 370 (446)
T PRK14324 292 LEEYLKKHGIELKRCNVGDKYVLECMKENGINFGGEQSGHIIFSDYAKTGDGLVSALQVSALMLESKKKASEALNPFEL- 370 (446)
T ss_pred HHHHHHHcCCeEEEeCChHHHHHHHHHhcCCEEEEcCcccEEecCcCCCCcHHHHHHHHHHHHHHcCCCHHHHHHhhhh-
Confidence 99999999999999999999999999999999999999997 7899999999999999999999999999999999885
Q ss_pred hC
Q psy5979 415 YG 416 (499)
Q Consensus 415 ~g 416 (499)
|+
T Consensus 371 ~~ 372 (446)
T PRK14324 371 YP 372 (446)
T ss_pred cC
Confidence 55
No 23
>PRK14323 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=1.6e-73 Score=602.70 Aligned_cols=405 Identities=24% Similarity=0.287 Sum_probs=330.9
Q ss_pred HHhhc-CCCCCCe-EEEeCCcccccchhhHHHHHhhCCCceEEEeecCCcchHHHHHHHHHHHHHCCCeEEEeCCCcccc
Q psy5979 12 LTALG-DKLKGSV-LVVGGDGRYFGDVAVDKIIKISGIRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILS 89 (499)
Q Consensus 12 ~~~~~-~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~g~~p 89 (499)
|...| ||.-|+. ++- +-.+-.|.|||++++.++.+++|+||||+|.+|++|++++++||+++|++|+++ |.+|
T Consensus 6 Fgt~giRG~~~~~~lt~--e~~~~lg~a~g~~l~~~~~~~~VvVg~D~R~ss~~l~~a~~~gL~s~G~~V~~~---g~~p 80 (440)
T PRK14323 6 FGTDGVRGVAGEPPLTP--EFVLKLGQAAGEVFKRHGPRPVVLLGKDTRQSGDMLEAALAAGLTSRGVRVEHL---GVLP 80 (440)
T ss_pred eCCCCeeeecCCCCCCH--HHHHHHHHHHHHHHHhcCCCCeEEEEeCCCccHHHHHHHHHHHHHHCCCEEEEe---cccC
Confidence 33344 5555532 443 555556789999998655567899999999999999999999999999999998 9999
Q ss_pred hhHHHHHHHHcCCccceEEcCCCCCCCCCCCceeEEEcCCCCCCChhHHHHHHHHHHhhhccCcCCCcccccccccCccc
Q psy5979 90 TPAVSALIRKHQVTGGIVLTASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITTQIKTYSIVPDLKVDITSIGSSSY 169 (499)
Q Consensus 90 TP~~~fav~~~~~~gGI~ITaSHNP~~~~~~nGiK~~~~~G~~~~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~ig~~~~ 169 (499)
||+++|++++++++||||||||||| ++||||||++++|.+++++.+++||+++.+.++|.++ .+..+|.
T Consensus 81 TP~~~~av~~~~~~gGI~ITaSHnP---~~~nGiK~~~~~G~~i~~~~~~~ie~~~~~~~~~~~~-----~~~~~g~--- 149 (440)
T PRK14323 81 TPGVSYLTRHLGATAGVVISASHNP---YQDNGIKFFGADGEKLPDAAELEIEALLDEVPELAEV-----TGAGIGS--- 149 (440)
T ss_pred hHHHHHHHHHhCCCEEEEEecCCCC---CccCCEEEeCCCCCcCCHHHHHHHHHHHhcccccCcc-----cccCcee---
Confidence 9999999999999999999999999 8999999999999999999899999887643344321 1122232
Q ss_pred cccCCcceEEEe-CcHHHHHHHHHhhcCchhHHhhhcCCCCCCCcEEEEcCCCCCChHHHHHHHHHhcCCCcceeeeccc
Q psy5979 170 EVDGAQFQVDVI-DSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINAMHGVTGPYVKKIFLEELGAQPDNAVNTTP 248 (499)
Q Consensus 170 ~~~~~~~~~~~~-d~~~~Y~~~l~~~i~~~~i~~~~~~~~~~~~lkVvvD~~~G~~~~~~~~il~~~lG~~~~~~v~~~~ 248 (499)
+... +..+.|++.+.+.++. .+++|||+||+||+++.+++++| ++|||+++ .+|+.|
T Consensus 150 --------~~~~~~~~~~Y~~~l~~~~~~------------~~~~kVvvD~~~G~~~~~~~~ll-~~lG~~v~-~l~~~~ 207 (440)
T PRK14323 150 --------VSDFTEAERLYLDFLLSHAPD------------LSGLKVALDCANGAAYRLAPKVF-QAAGADVF-ALFNTP 207 (440)
T ss_pred --------EEEhhhHHHHHHHHHHHhccc------------ccCCEEEEECCCchHHHHHHHHH-HHcCCcEE-EEeccC
Confidence 3433 5678899999876541 15899999999999999999999 99999987 699999
Q ss_pred CCCCCCCCCCCCcccHHHHHHHHHhCCCcEEEeeCCCCCeeEEEccCceEeCCCcHHHHHHHHHhcCchhhhcCccceee
Q psy5979 249 LPDFGGHHPDPNLTYAADLVQAMQAGDFDLGAAFDGDGDRNMVLGKKAFFVNPSDSLAVLAAHLDSIPYFKKTGVKGYAR 328 (499)
Q Consensus 249 d~~F~~~~p~P~~~~l~~l~~~v~~~~adlgia~D~DgDRl~vvd~~G~~l~~d~~~~lla~~ll~~~~~~~~~~~~vv~ 328 (499)
|+.|+.. .|.++++++|.+.|++.++|+|+++||||||++++|++|+++++|++++|++.+.. . ..||.
T Consensus 208 dg~~~~~--~~~~~~l~~l~~~v~~~~adlGia~DgD~DR~~~vD~~G~~i~~d~~~~l~a~~~~-------~--~~vV~ 276 (440)
T PRK14323 208 DGRNINR--GCGSTHPEALQRFVVEGGLDLGVAFDGDADRALFVDRRGRLFHGDHMLYLNALARG-------E--KAVVG 276 (440)
T ss_pred CCCcCCC--CCCCCCHHHHHHHHhccCCCEEEEeCCCcceeEEECCCCcEeCHHHHHHHHHHHhc-------C--CcEEE
Confidence 9999743 34457889999999999999999999999999999999999999999999997641 2 26999
Q ss_pred eccchHHHHHHHHHCCCcEEEeecchhHHhhhhhccCceEEEEecCCC-CCCCccCCchHHHHHHHHHHHHHcCCCHHHH
Q psy5979 329 SMPTGAAVDRVAKANNKELFEVPTGWKYFGNLMDAGRLSLCGEESFGT-GSDHIREKDGIWAVLAWLSVVEHTGKPVEEI 407 (499)
Q Consensus 329 ~~~ss~~l~~ia~~~g~~v~~t~tG~k~i~~~~~~~~~~~g~Eesgg~-~~~~~~~~Dgi~a~l~lle~la~~~~~L~el 407 (499)
|+.||.+++++++++|+++++||||+++|+++|.+.+++||||+|||+ +++|.+++|||+++++++|+|+.++++|+++
T Consensus 277 ~v~ss~~~~~~~~~~g~~v~~t~vG~~~i~~~m~~~~~~~ggE~sG~~~f~~~~~~~Dgi~a~l~~le~la~~~~~ls~l 356 (440)
T PRK14323 277 TVMSNMALEVKLREAGIAFHRTAVGDRYVHEKLHAKGLTLGGEQSGHVLFLDHAPTGDGVLTALLTLAAMKALGTDLDAW 356 (440)
T ss_pred EeCCChHHHHHHHHcCCeEEEeCChHHHHHHHHHhcCCeEEEcCcccEEeCCCCCCCcHHHHHHHHHHHHHHhCCCHHHH
Confidence 999999999999999999999999999999999999999999999997 7899999999999999999999999999999
Q ss_pred HHHHHHHhCCceEeeeccccCCchhHHHHHHHHHhhcCCCCcccccccCCCCcceecccCCCeEEEEeeCCeEEEEeecC
Q psy5979 408 LKSHWKQYGRNYFTRYDYENCSAAPCNQMMDELEKKVSAPEFKGVTLSAEGRSGSWWRQEKQGVRSAISQTGLVHIQIIR 487 (499)
Q Consensus 408 l~~lp~~~g~~~~~~~~~~~~~~~~k~~vm~~l~~~~~~~~~~g~~~~~~~~~~~~~v~~iDGik~~~~d~~Wvlir~s~ 487 (499)
++++|. +++.+.+ +.|+. |+++|+.. .+. ..+..+| +++ +++||+|||||+
T Consensus 357 ~~~~~~----~~~~~~~-v~~~~--k~~~~~~~--~~~-----------------~~i~~~~-~~~--~~~gW~LvRpS~ 407 (440)
T PRK14323 357 YDALPM----YPQTLLN-VRVSD--KAKVAADP--RVQ-----------------EAVREAE-ARL--GGRGRVNLRPSG 407 (440)
T ss_pred HHhhhh----cCceeEE-EEeCC--ccchhcCH--HHH-----------------HHHHHHH-hhc--CCCeEEEEecCC
Confidence 999885 2333333 35733 45666531 110 1122222 333 245899999999
Q ss_pred Ccccccc
Q psy5979 488 NRQFRRH 494 (499)
Q Consensus 488 ~~~~~~~ 494 (499)
+.|.=|.
T Consensus 408 TEP~irv 414 (440)
T PRK14323 408 TEPLVRV 414 (440)
T ss_pred CccEeEE
Confidence 9996443
No 24
>cd03088 ManB ManB is a bacterial phosphomannomutase (PMM) that catalyzes the conversion of mannose 6-phosphate to mannose-1-phosphate in the second of three steps in the GDP-mannose pathway, in which GDP-D-mannose is synthesized from fructose-6-phosphate. In Mycobacterium tuberculosis, the causative agent of tuberculosis, PMM is involved in the biosynthesis of mannosylated lipoglycans that participate in the association of mycobacteria with host macrophage phagocytic receptors. ManB belongs to the the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrall
Probab=100.00 E-value=1.2e-72 Score=598.47 Aligned_cols=403 Identities=18% Similarity=0.182 Sum_probs=326.4
Q ss_pred ccccchhhHHHHHhhCCCceEEEeecCCcchHHHHHHHHHHHHHCCCeEEEeCCCcccchhHHHHHHHHcCCccceEEcC
Q psy5979 31 RYFGDVAVDKIIKISGIRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQVTGGIVLTA 110 (499)
Q Consensus 31 ~~~~~~a~~~~~~~~~~~~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~g~~pTP~~~fav~~~~~~gGI~ITa 110 (499)
.+..+.|||++++....++.|+||||+|.+|++|+++++++|+++|++|+++ |.+|||+++|+++++++ +||||||
T Consensus 19 ~~~l~~a~~~~l~~~~~~~~VvVG~D~R~~s~~l~~a~~~gL~~~Gv~V~~~---g~~pTP~~~~a~~~~~~-ggI~ITa 94 (459)
T cd03088 19 CYAYTRAFLQHLESKFPGDTVAVGRDLRPSSPRIAAACAAALRDAGFRVVDC---GAVPTPALALYAMKRGA-PAIMVTG 94 (459)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEeCCCcchHHHHHHHHHHHHHCCCEEEEe---CCCCCHHHHHHHHHcCC-cEEEEeC
Confidence 3445789999997543356899999999999999999999999999999998 99999999999999976 8999999
Q ss_pred CCCCCCCCCCceeEEEcCCCCCCChhHHHHHHHHHHhhhccCcCCCcccccccccCccccccCCcceEEEeCcHHHHHHH
Q psy5979 111 SHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITTQIKTYSIVPDLKVDITSIGSSSYEVDGAQFQVDVIDSVEVYLQL 190 (499)
Q Consensus 111 SHNP~~~~~~nGiK~~~~~G~~~~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~d~~~~Y~~~ 190 (499)
|||| ++||||||++++| ++.+..+++|+++. +++++. ....++. ..+...+..+.|++.
T Consensus 95 SHnp---~~~nGiK~~~~~G-~~~~~~e~~I~~~~---~~~~~~-----~~~~~~~---------~~~~~~~~~~~Y~~~ 153 (459)
T cd03088 95 SHIP---ADRNGLKFYRPDG-EITKADEAAILAAL---VELPEA-----LFDPAGA---------LLPPDTDAADAYIAR 153 (459)
T ss_pred CCCC---CCCCCEEEECCCC-CCChHHHHHHHHHH---Hhhccc-----ccccccc---------CCcccchHHHHHHHH
Confidence 9999 8999999999999 67777788898773 344322 1122210 112223567899999
Q ss_pred HHhhcCchhHHhhhcCCCCCCCcEEEEcCCCCCChHHHHHHHHHhcCCCcceeeecccCCCCCCCCCCCC-cccHHHHHH
Q psy5979 191 MKEIFDFPKLQSLIKGSSGRPPFKLLINAMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDPN-LTYAADLVQ 269 (499)
Q Consensus 191 l~~~i~~~~i~~~~~~~~~~~~lkVvvD~~~G~~~~~~~~il~~~lG~~~~~~v~~~~d~~F~~~~p~P~-~~~l~~l~~ 269 (499)
+++.++...+ +++|||+||+||+++.+++++| ++|||+++ .+++.+ +|+...|+|. +++++++.+
T Consensus 154 l~~~i~~~~~----------~~lkIvvD~~~G~~~~~~~~ll-~~lG~~v~-~l~~~~--~~~~~~~~~~~~~~l~~l~~ 219 (459)
T cd03088 154 YTDFFGAGAL----------KGLRIGVYQHSSVGRDLLVRIL-EALGAEVV-PLGRSD--TFIPVDTEAVRPEDRALAAA 219 (459)
T ss_pred HHHHhCcccc----------CCCEEEEECCCCCHHHHHHHHH-HHcCCeEE-EeCCCC--CCCCCCCCcCCHHHHHHHHH
Confidence 9988874322 4799999999999999999999 99999987 577644 5665556664 478999999
Q ss_pred HHHhCCCcEEEeeCCCCCeeEEEccCceEeCCCcHHHHHHHHHhcCchhhhcCccceeeeccchHHHHHHHHHCCCcEEE
Q psy5979 270 AMQAGDFDLGAAFDGDGDRNMVLGKKAFFVNPSDSLAVLAAHLDSIPYFKKTGVKGYARSMPTGAAVDRVAKANNKELFE 349 (499)
Q Consensus 270 ~v~~~~adlgia~D~DgDRl~vvd~~G~~l~~d~~~~lla~~ll~~~~~~~~~~~~vv~~~~ss~~l~~ia~~~g~~v~~ 349 (499)
.+++.+||+||++||||||++++|++|+++++|++++|+++++. . ..|+.|+.||.++++++. ++++++
T Consensus 220 ~v~~~~adlGia~D~DgDR~~vvd~~G~~i~~d~l~~l~~~~~~-------~--~~Vv~~v~ss~~i~~~~~--~~~~~~ 288 (459)
T cd03088 220 WAAEHGLDAIVSTDGDGDRPLVADETGEWLRGDILGLLTARFLG-------A--DTVVTPVSSNSAIELSGF--FKRVVR 288 (459)
T ss_pred HHHhcCCCEEEEeCCCCCCceeECCCCCEECchHHHHHHHHHhC-------C--CEEEEccCCcHHHHHcCC--ceeEEE
Confidence 99999999999999999999999999999999999999998863 1 359999999999998875 589999
Q ss_pred eecchhHHhhhhhc-----cCceEEEEecCCC-CCC----------CccCCchHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q psy5979 350 VPTGWKYFGNLMDA-----GRLSLCGEESFGT-GSD----------HIREKDGIWAVLAWLSVVEHTGKPVEEILKSHWK 413 (499)
Q Consensus 350 t~tG~k~i~~~~~~-----~~~~~g~Eesgg~-~~~----------~~~~~Dgi~a~l~lle~la~~~~~L~ell~~lp~ 413 (499)
|||||+||+++|.+ .++++|+|+|||+ +++ |.+++|||+++++++|+|+.++++|+++++++|+
T Consensus 289 t~vG~~~i~~~m~~~~~~~~~~~~g~E~sg~~~~~~~~~~~~~~~~~~~~~Dgi~a~l~ile~l~~~~~~Ls~ll~~l~~ 368 (459)
T cd03088 289 TRIGSPYVIAAMAEAAAAGAGRVVGYEANGGFLLGSDIERNGRTLKALPTRDAVLPILAVLAAAKEAGIPLSELVASLPA 368 (459)
T ss_pred CCCccHHHHHHHHHHHhcCCceEEEEecccceeccchhhccccccccCCCccHHHHHHHHHHHHHhcCCCHHHHHHHHhh
Confidence 99999999999976 2478999999997 553 5789999999999999999999999999999998
Q ss_pred HhCCceEeeeccccCCchhHHHHHHHHHhhcCCCCcccccccCCCCcceecccCCCeEEEEeeCCeEEEEeecCCccc
Q psy5979 414 QYGRNYFTRYDYENCSAAPCNQMMDELEKKVSAPEFKGVTLSAEGRSGSWWRQEKQGVRSAISQTGLVHIQIIRNRQF 491 (499)
Q Consensus 414 ~~g~~~~~~~~~~~~~~~~k~~vm~~l~~~~~~~~~~g~~~~~~~~~~~~~v~~iDGik~~~~d~~Wvlir~s~~~~~ 491 (499)
.|+. +.....|+|+.|+++|++|++..... .+ .++..+ ....+++++||+|+.|+||+|+|||||++.|-
T Consensus 369 ~~~~----~~~i~~~~~~~~~~~m~~l~~~~~~~--~~-~~~~~~-~~~~~v~~~DGvk~~~~dg~W~liRpSgTEP~ 438 (459)
T cd03088 369 RFTA----SDRLQNFPTEKSQALIARLSADPEAR--AA-FFFALG-GEVASIDTTDGLRMTFANGDIVHLRPSGNAPE 438 (459)
T ss_pred cceE----hhccccCCHHHHHHHHHHHHhChHhh--hh-hhhccC-CcccccCCCCeEEEEECCCCEEEEECCCCCce
Confidence 7662 23332489988999999998743110 00 000000 00136899999999998878999999999985
No 25
>PRK14314 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=8.7e-73 Score=598.34 Aligned_cols=400 Identities=24% Similarity=0.322 Sum_probs=330.1
Q ss_pred CcccccchhhHHHHHhhCCCceEEEeecCCcchHHHHHHHHHHHHHCCCeEEEeCCCcccchhHHHHHHHHcCCccceEE
Q psy5979 29 DGRYFGDVAVDKIIKISGIRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQVTGGIVL 108 (499)
Q Consensus 29 ~~~~~~~~a~~~~~~~~~~~~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~g~~pTP~~~fav~~~~~~gGI~I 108 (499)
.-.+-.+.|||+++++....++|+||||+|.+|++|++++++||+++|++|+++ |.+|||+++|++++++++|||||
T Consensus 23 e~~~~l~~a~~~~l~~~~~~~~VvVg~D~R~~s~~l~~a~~~gL~s~Gv~V~~~---g~~ptP~~~~a~~~~~~~gGI~i 99 (450)
T PRK14314 23 EMALQLGRAAAYVFRNGSGRHRVVIGKDTRLSGYMFENALIAGLCSMGVDVLLV---GPLPTPGIAFITRSMRADAGVVI 99 (450)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcEEEEeCCCcChHHHHHHHHHHHHHCCCeEEEe---cccCCHHHHHHHHhcCCCEEEEE
Confidence 444455789999997544445899999999999999999999999999999998 89999999999999999999999
Q ss_pred cCCCCCCCCCCCceeEEEcCCCCCCChhHHHHHHHHHHhhhccCcCCCcccccccccCccccccCCcceEEEe-CcHHHH
Q psy5979 109 TASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITTQIKTYSIVPDLKVDITSIGSSSYEVDGAQFQVDVI-DSVEVY 187 (499)
Q Consensus 109 TaSHNP~~~~~~nGiK~~~~~G~~~~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~-d~~~~Y 187 (499)
|||||| ++||||||++++|.+++++.+++|++++.+ ++|... ++....+|+ +... +..+.|
T Consensus 100 TaShnp---~~~ngiK~~~~~G~~~~~~~~~~Ie~~~~~-~~~~~~---~~~~~~~g~-----------~~~~~~~~~~Y 161 (450)
T PRK14314 100 SASHNP---YQDNGIKFFSSDGFKLPDEVELRIEAMVLS-KDFDWL---LPDAHAVGK-----------AKRIDDAPGRY 161 (450)
T ss_pred EeCCCC---cccccEEEECCCCCCCCHHHHHHHHHHHhc-CCcccc---ccchhcCce-----------EEEeCchHHHH
Confidence 999999 899999999999999999999999998765 455310 111223332 3333 677899
Q ss_pred HHHHHhhcCchhHHhhhcCCCCCCCcEEEEcCCCCCChHHHHHHHHHhcCCCcceeeecccCCCCCCCCCCCCcccHHHH
Q psy5979 188 LQLMKEIFDFPKLQSLIKGSSGRPPFKLLINAMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDPNLTYAADL 267 (499)
Q Consensus 188 ~~~l~~~i~~~~i~~~~~~~~~~~~lkVvvD~~~G~~~~~~~~il~~~lG~~~~~~v~~~~d~~F~~~~p~P~~~~l~~l 267 (499)
+++|++.++ ..++. +++||++||+||+++.+++++| ++|||+++ .+|++|||+||...|. +++++++
T Consensus 162 ~~~l~~~id-~~i~~--------~~~kVvvD~~~Ga~~~~~~~il-~~lg~~v~-~~~~~~dg~~~~~~~~--~~~~~~l 228 (450)
T PRK14314 162 IVFLKATFP-KGLTL--------KGLKIVLDCANGAAYKVAPAVF-EELGAEVI-CIGVEPNGLNINAGCG--SLHPEVI 228 (450)
T ss_pred HHHHHHhhc-cccCC--------CCCEEEEECCCchHHHHHHHHH-HHcCCeEE-EeccCCCCCCCCCCCC--CCCHHHH
Confidence 999999887 22322 5899999999999999999999 99999987 6999999999854433 4677889
Q ss_pred HHHHHhCCCcEEEeeCCCCCeeEEEccCceEeCCCcHHHHHHHHHhcCchhhhcCccceeeeccchHHHHHHHHHCCCcE
Q psy5979 268 VQAMQAGDFDLGAAFDGDGDRNMVLGKKAFFVNPSDSLAVLAAHLDSIPYFKKTGVKGYARSMPTGAAVDRVAKANNKEL 347 (499)
Q Consensus 268 ~~~v~~~~adlgia~D~DgDRl~vvd~~G~~l~~d~~~~lla~~ll~~~~~~~~~~~~vv~~~~ss~~l~~ia~~~g~~v 347 (499)
.+.|++.+||+|+++||||||++++|++|+++++|++++|+++++++. +..+...||.|+.||.+++++|+++|+++
T Consensus 229 ~~~v~~~~adlGia~DgDgDR~~~vd~~G~~i~~d~~~al~~~~ll~~---~~~~~~~vv~~v~ss~~~~~ia~~~g~~v 305 (450)
T PRK14314 229 AKAVIEHGADLGIALDGDADRLIVVDEKGHIVDGDQIMAICATDLKKR---GALPKNTLVATVMSNMGLEVAMKELGGQV 305 (450)
T ss_pred HHHHHhcCCCeEEEEcCCCceEEEECCCCcCcCHHHHHHHHHHHHHHh---cCCCCCEEEEeccCChHHHHHHHHcCCEE
Confidence 999999999999999999999999999999999999999999999852 11122369999999999999999999999
Q ss_pred EEeecchhHHhhhhhccCceEEEEecCCC-CCCCccCCchHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCceEeeeccc
Q psy5979 348 FEVPTGWKYFGNLMDAGRLSLCGEESFGT-GSDHIREKDGIWAVLAWLSVVEHTGKPVEEILKSHWKQYGRNYFTRYDYE 426 (499)
Q Consensus 348 ~~t~tG~k~i~~~~~~~~~~~g~Eesgg~-~~~~~~~~Dgi~a~l~lle~la~~~~~L~ell~~lp~~~g~~~~~~~~~~ 426 (499)
++||||+++|+++|.+.+++||||+|||+ +++|.+++|||+++++++|+|+.++++|++++++++ .|++.+ .
T Consensus 306 ~~t~vG~~~i~~~m~~~~~~~ggE~sg~~~~~~~~~~~Dgi~a~l~~le~la~~~~~Ls~l~~~~~-~~p~~~------~ 378 (450)
T PRK14314 306 LRTPVGDRYVVEEMRRGGANLGGEQSGHLIFLDHNTTGDGILSALQVLRIMIESGKPLSELAGLLE-PFPQAL------I 378 (450)
T ss_pred EEeCChHHHHHHHHHhcCCEEEEeCcccEEEeCCCCCCcHHHHHHHHHHHHHHhCCCHHHHHhhhh-hcCccc------e
Confidence 99999999999999999999999999997 789999999999999999999999999999999876 344321 1
Q ss_pred cCCchhHHHHHHHHHhhcCCCCcccccccCCCCcceecccCCCeEEEEeeCCeEEEEeecCCcccccc
Q psy5979 427 NCSAAPCNQMMDELEKKVSAPEFKGVTLSAEGRSGSWWRQEKQGVRSAISQTGLVHIQIIRNRQFRRH 494 (499)
Q Consensus 427 ~~~~~~k~~vm~~l~~~~~~~~~~g~~~~~~~~~~~~~v~~iDGik~~~~d~~Wvlir~s~~~~~~~~ 494 (499)
.|+|+.|+++ +.+ +. ..+.+||+++.++++||+|||||++.|.=|.
T Consensus 379 ~~~~~~k~~~-~~~-~~--------------------~~~~i~~v~~~~~~~gWvLiRpS~tEP~iri 424 (450)
T PRK14314 379 NVRVKEKIPL-ETL-PE--------------------VAKAIKDVEEALGDSGRVLLRYSGTENLCRV 424 (450)
T ss_pred EeEeCCcCcc-ccH-HH--------------------HHHHHHHHHhhhCCCcEEEEecCCCCcEEEE
Confidence 4666554331 111 11 1123556666554458999999999996443
No 26
>PRK14318 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=3.5e-73 Score=601.04 Aligned_cols=411 Identities=24% Similarity=0.282 Sum_probs=336.0
Q ss_pred HHHhhc-CCCCCCeEEEeCCcccccchhhHHHHHhhC----CCceEEEeecCCcchHHHHHHHHHHHHHCCCeEEEeCCC
Q psy5979 11 ILTALG-DKLKGSVLVVGGDGRYFGDVAVDKIIKISG----IRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQN 85 (499)
Q Consensus 11 ~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~----~~~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~ 85 (499)
+|...| ||+-|..++- .-.+-.|.|||+++++.+ .+++|+||||+|.+|++|++++++||+++|++|+++
T Consensus 4 ~Fg~~giRG~~~~~ltp--e~~~~lg~a~~~~l~~~~~~~~~~~~VvVg~D~R~ss~~l~~a~~~gL~s~G~~V~~~--- 78 (448)
T PRK14318 4 LFGTDGVRGLANRDLTA--ELALALGAAAARVLGHAGRPGGRRPVAVVGRDPRASGEFLEAAVSAGLASAGVDVLRV--- 78 (448)
T ss_pred ccCCCCcceecCCccCH--HHHHHHHHHHHHHHHhcccccCCCCeEEEEeCCCcCHHHHHHHHHHHHHHCCCEEEEe---
Confidence 344444 6665654433 555556789999997543 256799999999999999999999999999999998
Q ss_pred cccchhHHHHHHHHcCCccceEEcCCCCCCCCCCCceeEEEcCCCCCCChhHHHHHHHHHHhhhccCcCCCccccccccc
Q psy5979 86 GILSTPAVSALIRKHQVTGGIVLTASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITTQIKTYSIVPDLKVDITSIG 165 (499)
Q Consensus 86 g~~pTP~~~fav~~~~~~gGI~ITaSHNP~~~~~~nGiK~~~~~G~~~~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~ig 165 (499)
|.+|||+++|+++++++++|||||||||| ++||||||++++|.+++++.+++|++++.+ +++.+. ..+.+|
T Consensus 79 g~~pTP~~~~av~~~~~~gGI~ITaSHnp---~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~-~~~~~~-----~~~~~g 149 (448)
T PRK14318 79 GVLPTPAVAYLTAALDADFGVMISASHNP---MPDNGIKFFAAGGHKLPDDVEDRIEAVLGQ-LPWLRP-----TGAGVG 149 (448)
T ss_pred cccCchHHHHHHHhcCCCEEEEEEcCCCC---cccCCEEEEcCCCCcCCHHHHHHHHHHHhc-cCcccc-----ccccCc
Confidence 99999999999999999999999999999 899999999999999999999999988765 444322 122333
Q ss_pred CccccccCCcceEEEe-CcHHHHHHHHHhhcCchhHHhhhcCCCCCCCcEEEEcCCCCCChHHHHHHHHHhcCCCcceee
Q psy5979 166 SSSYEVDGAQFQVDVI-DSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINAMHGVTGPYVKKIFLEELGAQPDNAV 244 (499)
Q Consensus 166 ~~~~~~~~~~~~~~~~-d~~~~Y~~~l~~~i~~~~i~~~~~~~~~~~~lkVvvD~~~G~~~~~~~~il~~~lG~~~~~~v 244 (499)
+ +... +..+.|++.+.+.++. + .+++||++||+||+++.+++++| ++|||+++ .+
T Consensus 150 ~-----------~~~~~~~~~~Y~~~l~~~i~~---~--------~~~~kVvvD~~nG~~~~~~~~ll-~~lG~~v~-~i 205 (448)
T PRK14318 150 R-----------VIDAPDATDRYLRHLLGALPT---R--------LDGLKVVVDCAHGAASGVAPEAY-RAAGADVI-AI 205 (448)
T ss_pred e-----------EEECCcHHHHHHHHHHHHhcc---c--------cCCCEEEEECCCchHHHHHHHHH-HHcCCEEE-Ee
Confidence 3 3333 5678999999988762 2 25899999999999999999999 99999987 69
Q ss_pred ecccCCCCCCCCCCCCcccHHHHHHHHHhCCCcEEEeeCCCCCeeEEEccCceEeCCCcHHHHHHHHHhcCchhhhc-Cc
Q psy5979 245 NTTPLPDFGGHHPDPNLTYAADLVQAMQAGDFDLGAAFDGDGDRNMVLGKKAFFVNPSDSLAVLAAHLDSIPYFKKT-GV 323 (499)
Q Consensus 245 ~~~~d~~F~~~~p~P~~~~l~~l~~~v~~~~adlgia~D~DgDRl~vvd~~G~~l~~d~~~~lla~~ll~~~~~~~~-~~ 323 (499)
|+.||+.||. |+|.++++.++.+.|++.+||+|+++||||||++++|++|+++++|++++|++.++++. .. ..
T Consensus 206 n~~~dg~~~~--~~~~~~~l~~l~~~v~~~~adlGia~DgD~DR~~~vd~~G~~l~~d~~~~l~a~~l~~~----~~~~~ 279 (448)
T PRK14318 206 NADPDGLNIN--DGCGSTHLEQLQAAVVAHGADLGLAHDGDADRCLAVDANGNVVDGDQIMAILALAMKEA----GELAS 279 (448)
T ss_pred ccCCCCCCCC--CCCCCCCHHHHHHHHHhcCCCEEEEecCCCceEEEECCCCcEeCHHHHHHHHHHHHHHh----cCCCC
Confidence 9999999974 34445889999999999999999999999999999999999999999999999888642 11 01
Q ss_pred cceeeeccchHHHHHHHHHCCCcEEEeecchhHHhhhhhccCceEEEEecCCC-CCCCccCCchHHHHHHHHHHHHHcCC
Q psy5979 324 KGYARSMPTGAAVDRVAKANNKELFEVPTGWKYFGNLMDAGRLSLCGEESFGT-GSDHIREKDGIWAVLAWLSVVEHTGK 402 (499)
Q Consensus 324 ~~vv~~~~ss~~l~~ia~~~g~~v~~t~tG~k~i~~~~~~~~~~~g~Eesgg~-~~~~~~~~Dgi~a~l~lle~la~~~~ 402 (499)
..||.|+.||.+++++++++|+++++||||+++++++|.+.+++||||+|||+ +++|.+++|||+++++++|+|+.+++
T Consensus 280 ~~vV~~v~ss~~~~~~~~~~g~~v~~t~vG~~~i~~~~~~~~~~~ggE~sG~~~~~~~~~~~Dgi~a~l~ile~la~~~~ 359 (448)
T PRK14318 280 DTLVATVMSNLGLKLAMREAGITVVTTAVGDRYVLEEMRAGGYSLGGEQSGHIVMPDHATTGDGILTGLRLMARMAQTGK 359 (448)
T ss_pred CcEEEEecCchHHHHHHHHcCCcEEEeCChHHHHHHHHHhcCcEEEEcCcCcEEecCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 36899999999999999999999999999999999999998999999999997 78999999999999999999999999
Q ss_pred CHHHHHHHHHHHhCCceEeeeccccCCchhHHHHHHHHHhhcCCCCcccccccCCCCcceecccCCCeEEEEeeCCeEEE
Q psy5979 403 PVEEILKSHWKQYGRNYFTRYDYENCSAAPCNQMMDELEKKVSAPEFKGVTLSAEGRSGSWWRQEKQGVRSAISQTGLVH 482 (499)
Q Consensus 403 ~L~ell~~lp~~~g~~~~~~~~~~~~~~~~k~~vm~~l~~~~~~~~~~g~~~~~~~~~~~~~v~~iDGik~~~~d~~Wvl 482 (499)
+|++++++++. +++.+ ..|+|+.++++|+. +.+.. .+..+| ++ ++++||+|
T Consensus 360 ~ls~l~~~~~~-~p~~~------~~~~~~~~~~~~~~--~~~~~-----------------~i~~~~-~~--~~~~gw~l 410 (448)
T PRK14318 360 SLAELASAMTV-LPQVL------INVPVVDKTTAATA--PSVRA-----------------AVARAE-AE--LGDTGRVL 410 (448)
T ss_pred CHHHHHhhhhh-cCcce------eeeecCCccchhcc--HHHHH-----------------HHHHHH-hh--hcCCeEEE
Confidence 99999998764 33211 25888777777652 11100 111122 22 22348999
Q ss_pred EeecCCcccccc
Q psy5979 483 IQIIRNRQFRRH 494 (499)
Q Consensus 483 ir~s~~~~~~~~ 494 (499)
||||++.|.=|.
T Consensus 411 vRpS~teP~irv 422 (448)
T PRK14318 411 LRPSGTEPLVRV 422 (448)
T ss_pred EeeCCCCcEEEE
Confidence 999999996544
No 27
>TIGR01455 glmM phosphoglucosamine mutase. This model describes GlmM, phosphoglucosamine mutase, also designated in MrsA and YhbF E. coli, UreC in Helicobacter pylori, and femR315 or FemD in Staphlococcus aureus. It converts glucosamine-6-phosphate to glucosamine-1-phosphate as part of the pathway toward UDP-N-acetylglucosamine for peptidoglycan and lipopolysaccharides.
Probab=100.00 E-value=1.2e-72 Score=596.55 Aligned_cols=392 Identities=23% Similarity=0.288 Sum_probs=324.2
Q ss_pred CcccccchhhHHHHHhhC-CCceEEEeecCCcchHHHHHHHHHHHHHCCCeEEEeCCCcccchhHHHHHHHHcCCccceE
Q psy5979 29 DGRYFGDVAVDKIIKISG-IRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQVTGGIV 107 (499)
Q Consensus 29 ~~~~~~~~a~~~~~~~~~-~~~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~g~~pTP~~~fav~~~~~~gGI~ 107 (499)
......|.|||+++++.+ .+++|+||||+|.+|++|++++++||+++|++|+++ |.+|||+++|++++++++||||
T Consensus 18 ~~~~~l~~a~~~~l~~~~~~~~~V~Vg~D~R~~s~~l~~a~~~gL~s~G~~V~~~---g~~pTP~~~~av~~~~~~gGI~ 94 (443)
T TIGR01455 18 ELALLLGAAAGRVLRQGRDTAPRVVIGKDTRLSGYMLENALAAGLNSAGVDVLLL---GPLPTPAVAYLTRTLRADAGVM 94 (443)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCcChHHHHHHHHHHHHHCCCeEEEe---CCcCcHHHHHHHHhcCCCeEEE
Confidence 444445789999998544 234699999999999999999999999999999998 8999999999999999999999
Q ss_pred EcCCCCCCCCCCCceeEEEcCCCCCCChhHHHHHHHHHHhhhc-cCcCCCcccccccccCccccccCCcceEEEe-CcHH
Q psy5979 108 LTASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITTQIKT-YSIVPDLKVDITSIGSSSYEVDGAQFQVDVI-DSVE 185 (499)
Q Consensus 108 ITaSHNP~~~~~~nGiK~~~~~G~~~~~~~~~~Ie~~~~~~~~-~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~-d~~~ 185 (499)
||||||| ++||||||++++|.+++++.+++|++++.+ ++ +.+. ....+| .+... +..+
T Consensus 95 iTaSHnP---~~~nGiK~~~~~G~~i~~~~~~~I~~~~~~-~~~~~~~-----~~~~~g-----------~~~~~~~~~~ 154 (443)
T TIGR01455 95 ISASHNP---YEDNGIKFFGPGGFKLDDATEAAIEALLDE-ADPLPRP-----ESEGLG-----------RVKRYPDAVG 154 (443)
T ss_pred EecCCCC---cccCcEEEecCCCCcCCHHHHHHHHHHHhc-CccccCC-----CccCce-----------EEEEcccHHH
Confidence 9999999 899999999999999999999999988764 33 3211 112222 23333 5788
Q ss_pred HHHHHHHhhcCchhHHhhhcCCCCCCCcEEEEcCCCCCChHHHHHHHHHhcCCCcceeeecccCCCCCCCCCCCCcccHH
Q psy5979 186 VYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINAMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDPNLTYAA 265 (499)
Q Consensus 186 ~Y~~~l~~~i~~~~i~~~~~~~~~~~~lkVvvD~~~G~~~~~~~~il~~~lG~~~~~~v~~~~d~~F~~~~p~P~~~~l~ 265 (499)
.|++.|++.++. .+++ +++||++||+||+++.+++++| ++|||+++ .+|+.|||+||. ++|.++++.
T Consensus 155 ~Y~~~l~~~i~~-~~~~--------~~lkVvvD~~~G~~~~~~~~ll-~~lg~~v~-~in~~~d~~~~~--~~~~~~~l~ 221 (443)
T TIGR01455 155 RYIEFLKSTLPR-GLTL--------SGLKVVLDCANGAAYKVAPHVF-RELGAEVI-AIGVEPDGLNIN--DGCGSTHLD 221 (443)
T ss_pred HHHHHHHHHhhc-cccc--------CCCEEEEECCCchHHHHHHHHH-HHcCCEEE-EEccCCCCCCCC--CCCCCCCHH
Confidence 999999998873 2332 6899999999999999999999 99999986 699999999974 334457899
Q ss_pred HHHHHHHhCCCcEEEeeCCCCCeeEEEccCceEeCCCcHHHHHHHHHhcCchhhhcCccceeeeccchHHHHHHHHHCCC
Q psy5979 266 DLVQAMQAGDFDLGAAFDGDGDRNMVLGKKAFFVNPSDSLAVLAAHLDSIPYFKKTGVKGYARSMPTGAAVDRVAKANNK 345 (499)
Q Consensus 266 ~l~~~v~~~~adlgia~D~DgDRl~vvd~~G~~l~~d~~~~lla~~ll~~~~~~~~~~~~vv~~~~ss~~l~~ia~~~g~ 345 (499)
+|.+.|++.+||+|+++||||||++++|++|+++++|++++|+++++++.. ..++ ..||.|++||.+++++|+++|+
T Consensus 222 ~l~~~v~~~~adlGia~DgD~DR~~~vd~~G~~l~~d~~~al~a~~ll~~~--~~~~-~~vv~~v~ss~~l~~~a~~~g~ 298 (443)
T TIGR01455 222 ALQKAVREHGADLGIAFDGDADRVLAVDANGRIVDGDQILYIIARALKESG--ELAG-NTVVATVMSNLGLERALEKLGL 298 (443)
T ss_pred HHHHHHhhcCCCEEEEEcCCCceEEEECCCCcEeCHHHHHHHHHHHHHHhc--CCCC-CcEEEEccCCHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999999999997520 0122 3699999999999999999999
Q ss_pred cEEEeecchhHHhhhhhccCceEEEEecCCC-CCCCccCCchHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCceEeeec
Q psy5979 346 ELFEVPTGWKYFGNLMDAGRLSLCGEESFGT-GSDHIREKDGIWAVLAWLSVVEHTGKPVEEILKSHWKQYGRNYFTRYD 424 (499)
Q Consensus 346 ~v~~t~tG~k~i~~~~~~~~~~~g~Eesgg~-~~~~~~~~Dgi~a~l~lle~la~~~~~L~ell~~lp~~~g~~~~~~~~ 424 (499)
++++||||++||+++|.+.+++||||||||+ +++|.+++|||+++++++|+|++++++|+++++++|. +++.+
T Consensus 299 ~v~~t~vG~~~i~~~m~~~~~~~ggE~sG~~~~~~~~~~~Dgi~a~l~ile~la~~~~~l~~l~~~~~~----~~~~~-- 372 (443)
T TIGR01455 299 TLIRTAVGDRYVLEEMRESGYNLGGEQSGHIILLDYSTTGDGIVSALQVLTIMKKSGSTLSELAAEFVP----YPQTL-- 372 (443)
T ss_pred eEEEeCChHHHHHHHHHhcCCEEEEcCcceEEecCCCcCCcHHHHHHHHHHHHHHhCCCHHHHHhhccc----cCeee--
Confidence 9999999999999999998999999999997 7899999999999999999999999999999999875 22222
Q ss_pred cccCCchh-HHHH-----HHHHHhhcCCCCcccccccCCCCcceecccCCCeEEEEeeCCeEEEEeecCCccccc
Q psy5979 425 YENCSAAP-CNQM-----MDELEKKVSAPEFKGVTLSAEGRSGSWWRQEKQGVRSAISQTGLVHIQIIRNRQFRR 493 (499)
Q Consensus 425 ~~~~~~~~-k~~v-----m~~l~~~~~~~~~~g~~~~~~~~~~~~~v~~iDGik~~~~d~~Wvlir~s~~~~~~~ 493 (499)
..|+|+. ++++ |+...+. .| .++. ++||+|||||++.|.=|
T Consensus 373 -~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~-~~~~--~~gW~LiRpS~teP~ir 419 (443)
T TIGR01455 373 -VNVRVADRKLAAAEAPAVKAAIED------------------------AE-AELG--GTGRILLRPSGTEPLIR 419 (443)
T ss_pred -eeEEecccccccccCHHHHHHHHH------------------------HH-HHhC--CCcEEEEecCCCCceEE
Confidence 2466654 3343 3222111 11 1222 45899999999998644
No 28
>PRK14316 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=3.2e-73 Score=601.90 Aligned_cols=407 Identities=21% Similarity=0.276 Sum_probs=328.6
Q ss_pred CCCCCCeEEEeCCcccccchhhHHHHHhh-CCCceEEEeecCCcchHHHHHHHHHHHHHCCCeEEEeCCCcccchhHHHH
Q psy5979 17 DKLKGSVLVVGGDGRYFGDVAVDKIIKIS-GIRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSA 95 (499)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~g~~pTP~~~f 95 (499)
||.-|..++- +-.+-.|.|||+++.+. +.+++|+||||+|.+|++|++++++||+++|++|+++ |.+|||+++|
T Consensus 10 RG~~~~~ltp--e~~~~ig~a~~~~l~~~~~~~~~VvVg~D~R~ss~~l~~a~~~gL~s~G~~V~~~---g~~pTP~~~~ 84 (448)
T PRK14316 10 RGVANKELTP--ELAFKLGRAGGYVLTKHETERPKVLVGRDTRISGDMLESALIAGLLSVGAEVMRL---GVIPTPGVAY 84 (448)
T ss_pred ceEcCCCCCH--HHHHHHHHHHHHHHHhccCCCCeEEEEECCCcCHHHHHHHHHHHHHHCCCEEEEe---cccchHHHHH
Confidence 5554444442 44455577899998753 2356799999999999999999999999999999998 9999999999
Q ss_pred HHHHcCCccceEEcCCCCCCCCCCCceeEEEcCCCCCCChhHHHHHHHHHHhh-hccCcCCCcccccccccCccccccCC
Q psy5979 96 LIRKHQVTGGIVLTASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITTQI-KTYSIVPDLKVDITSIGSSSYEVDGA 174 (499)
Q Consensus 96 av~~~~~~gGI~ITaSHNP~~~~~~nGiK~~~~~G~~~~~~~~~~Ie~~~~~~-~~~~~~~~~~~~~~~ig~~~~~~~~~ 174 (499)
++++++++||||||||||| ++||||||++++|.+++++.+++|++++.+. +++.+ .....+|.
T Consensus 85 av~~~~~~gGi~ITaSHnp---~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~-----~~~~~~g~-------- 148 (448)
T PRK14316 85 LTRALGADAGVMISASHNP---VEDNGIKFFGSDGFKLSDEQEDEIEALLDAEEDTLPR-----PSGEGLGT-------- 148 (448)
T ss_pred HHHHhcCcEEEEEEecCCC---hhhCcEEEEcCCCCcCCHHHHHHHHHHHhcccccccc-----Ccccccee--------
Confidence 9999999999999999999 8999999999999999999999999887541 12321 11122222
Q ss_pred cceEEEe-CcHHHHHHHHHhhcCchhHHhhhcCCCCCCCcEEEEcCCCCCChHHHHHHHHHhcCCCcceeeecccCCCCC
Q psy5979 175 QFQVDVI-DSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINAMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFG 253 (499)
Q Consensus 175 ~~~~~~~-d~~~~Y~~~l~~~i~~~~i~~~~~~~~~~~~lkVvvD~~~G~~~~~~~~il~~~lG~~~~~~v~~~~d~~F~ 253 (499)
+... +..+.|++.+.+.++.+ .+++||++||+||+++.+++++| ++|||+++ .+|++||+.||
T Consensus 149 ---~~~~~~~~~~Y~~~l~~~i~~~-----------~~~lkvvvD~~nG~~~~~~~~ll-~~lg~~v~-~in~~~dg~~~ 212 (448)
T PRK14316 149 ---VSDYPEGLRKYLQFLKSTIDED-----------LSGLKVALDCANGATSSLAPRLF-ADLGADVT-VIGTSPDGLNI 212 (448)
T ss_pred ---EEEeCcHHHHHHHHHHHhcCcc-----------cCCCEEEEECCCchhhHHHHHHH-HHcCCeEE-EEccCCCCCCC
Confidence 3333 56788999999988642 15899999999999999999999 99999987 69999999997
Q ss_pred CCCCCCCcccHHHHHHHHHhCCCcEEEeeCCCCCeeEEEccCceEeCCCcHHHHHHHHHhcCchhhhcCccceeeeccch
Q psy5979 254 GHHPDPNLTYAADLVQAMQAGDFDLGAAFDGDGDRNMVLGKKAFFVNPSDSLAVLAAHLDSIPYFKKTGVKGYARSMPTG 333 (499)
Q Consensus 254 ~~~p~P~~~~l~~l~~~v~~~~adlgia~D~DgDRl~vvd~~G~~l~~d~~~~lla~~ll~~~~~~~~~~~~vv~~~~ss 333 (499)
+.. |.+++++++.+.|++.+||+|+++||||||++++|++|+++++|++++|+++++++. ...+...||.|+.||
T Consensus 213 ~~~--~~~~~~~~l~~~v~~~~adlGia~DgDaDR~~~vd~~G~~i~~d~~~~l~a~~ll~~---~~~~~~~vv~~v~ss 287 (448)
T PRK14316 213 NDG--VGSTHPEALQELVVEKGADLGLAFDGDADRLIAVDENGNIVDGDKIMFICGKYLKEK---GRLKKNTIVTTVMSN 287 (448)
T ss_pred CCC--CCCCCHHHHHHHHhhcCCCEEEEEcCCCceEEEECCCCCEeCHHHHHHHHHHHHHHh---CCCCCCeEEEeccCc
Confidence 543 444677889999999999999999999999999999999999999999999999853 100123689999999
Q ss_pred HHHHHHHHHCCCcEEEeecchhHHhhhhhccCceEEEEecCCC-CCCCccCCchHHHHHHHHHHHHHcCCCHHHHHHHHH
Q psy5979 334 AAVDRVAKANNKELFEVPTGWKYFGNLMDAGRLSLCGEESFGT-GSDHIREKDGIWAVLAWLSVVEHTGKPVEEILKSHW 412 (499)
Q Consensus 334 ~~l~~ia~~~g~~v~~t~tG~k~i~~~~~~~~~~~g~Eesgg~-~~~~~~~~Dgi~a~l~lle~la~~~~~L~ell~~lp 412 (499)
.+++++++++|+++++||||++||+++|.+.+++||||+|||+ +++|.+++|||+++++++|+|+.++++|++++++++
T Consensus 288 ~~~~~~~~~~g~~v~~~~vG~~~i~~~m~~~~~~~ggE~sG~~~f~~~~~~~Dgi~a~l~ile~l~~~~~~ls~l~~~~~ 367 (448)
T PRK14316 288 LGFYKALEEEGINSVKTKVGDRYVVEEMRKGGYNLGGEQSGHIIFLDYNTTGDGLLTALQLAKVMKETGKKLSELAAEMK 367 (448)
T ss_pred hHHHHHHHHcCCeEEEeCChHHHHHHHHHhcCCeEEEcCcccEEecccCCCCcHHHHHHHHHHHHHHhCCCHHHHHhhhh
Confidence 9999999999999999999999999999998999999999997 789999999999999999999999999999999886
Q ss_pred HHhCCceEeeeccccCCchhHHHHHHHHHhhcCCCCcccccccCCCCcceecccCCCeEEEEeeCCeEEEEeecCCcccc
Q psy5979 413 KQYGRNYFTRYDYENCSAAPCNQMMDELEKKVSAPEFKGVTLSAEGRSGSWWRQEKQGVRSAISQTGLVHIQIIRNRQFR 492 (499)
Q Consensus 413 ~~~g~~~~~~~~~~~~~~~~k~~vm~~l~~~~~~~~~~g~~~~~~~~~~~~~v~~iDGik~~~~d~~Wvlir~s~~~~~~ 492 (499)
. |+..+ ... .+ +.|+++|+. +. ..+.+||+++.++++||+|||||++.|.=
T Consensus 368 ~-~p~~~-~~~---~v--~~k~~~~~~--~~--------------------~~~~i~~i~~~~~~~gw~liRpS~TEP~i 418 (448)
T PRK14316 368 K-YPQKL-VNV---RV--TDKKKAMEN--PE--------------------IKEIIEKVEEEMAGNGRVLVRPSGTEPLV 418 (448)
T ss_pred h-cCcce-EEe---Ee--CCccccccC--HH--------------------HHHHHHHHHHHhCCCceEEEecCCCCcEE
Confidence 3 44332 222 22 123444431 11 11124445554433489999999999964
Q ss_pred cc
Q psy5979 493 RH 494 (499)
Q Consensus 493 ~~ 494 (499)
|.
T Consensus 419 rv 420 (448)
T PRK14316 419 RV 420 (448)
T ss_pred EE
Confidence 43
No 29
>PRK14320 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=3e-72 Score=593.08 Aligned_cols=394 Identities=21% Similarity=0.271 Sum_probs=322.5
Q ss_pred CCcccccchhhHHHHHhhCCCceEEEeecCCcchHHHHHHHHHHHHHCCCeEEEeCCCcccchhHHHHHHHHcCCccceE
Q psy5979 28 GDGRYFGDVAVDKIIKISGIRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQVTGGIV 107 (499)
Q Consensus 28 ~~~~~~~~~a~~~~~~~~~~~~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~g~~pTP~~~fav~~~~~~gGI~ 107 (499)
+...+-.|.|||+++++.+..+.|+||||+|.+|++|++++++||+++|++|+++ |.+|||+++|++++++|+||||
T Consensus 21 pe~~~~lg~a~g~~l~~~~~~~~VvVg~D~R~ss~~l~~a~~~gL~s~G~~V~d~---g~~pTP~~~~av~~~~~~gGI~ 97 (443)
T PRK14320 21 VEFTQKLGNAVGSLINQKNYPKFVIVGQDTRSSGGFLKFALVSGLNAAGIDVLDL---GVVPTPVVAFMTVKHRAAAGFV 97 (443)
T ss_pred HHHHHHHHHHHHHhHhhCCCCCeEEEEECCCcCHHHHHHHHHHHHHHCCCEEEEe---cccCchHHHHHHHHcCCceEEE
Confidence 3455556789999997544335699999999999999999999999999999998 9999999999999999999999
Q ss_pred EcCCCCCCCCCCCceeEEEcCCCCCCChhHHHHHHHHHHhhhccCcCCCcccccccccCccccccCCcceEEEe-CcHHH
Q psy5979 108 LTASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITTQIKTYSIVPDLKVDITSIGSSSYEVDGAQFQVDVI-DSVEV 186 (499)
Q Consensus 108 ITaSHNP~~~~~~nGiK~~~~~G~~~~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~-d~~~~ 186 (499)
||||||| ++||||||++++|.+++++.+++|++++. ++|.+. .+..+|. +... +..+.
T Consensus 98 ITaSHNp---~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~--~~~~~~-----~~~~~g~-----------~~~~~~~~~~ 156 (443)
T PRK14320 98 ITASHNK---FTDNGIKLFSSNGFKLDDALEEEVEDMID--GDFIYQ-----PQFKFGS-----------YKILANAIDE 156 (443)
T ss_pred EEeCCCc---hHHCeEEEECCCCCcCCHHHHHHHHHHHh--cccccc-----ccccCcc-----------eEeccchHHH
Confidence 9999999 89999999999999999999999998754 344321 1122232 3333 56789
Q ss_pred HHHHHHhhcCchhHHhhhcCCCCCCCcEEEEcCCCCCChHHHHHHHHHhcCCCcceeeecccCCCCCCCCCCCCcccHHH
Q psy5979 187 YLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINAMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDPNLTYAAD 266 (499)
Q Consensus 187 Y~~~l~~~i~~~~i~~~~~~~~~~~~lkVvvD~~~G~~~~~~~~il~~~lG~~~~~~v~~~~d~~F~~~~p~P~~~~l~~ 266 (499)
|++++.+.++ .+++ .++||++||+||+++.+++++| ++|||+++ .+|++|||.|+ +|+|.++++++
T Consensus 157 Y~~~l~~~~~--~~~~--------~~~kVvvD~~nG~~~~~~~~ll-~~lg~~v~-~i~~~~dg~~~--~~~~~~~~l~~ 222 (443)
T PRK14320 157 YIESIHSRFA--KFVN--------YKGKVVVDCAHGAASHNFEALL-DKFGINYV-SIASNPDGLNI--NVGCGATCVSN 222 (443)
T ss_pred HHHHHHHHHH--hhcc--------CCCEEEEECCCchHHHHHHHHH-HHcCCcEE-EECCcCCCCCC--CCCCchHhHHH
Confidence 9999988765 2221 3579999999999999999999 99999987 69999999997 34555688999
Q ss_pred HHHHHHhCCCcEEEeeCCCCCeeEEEccCceEeCCCcHHHHHHHHHhcCchhhhcCccceeeeccchHHHHHHHHHCCCc
Q psy5979 267 LVQAMQAGDFDLGAAFDGDGDRNMVLGKKAFFVNPSDSLAVLAAHLDSIPYFKKTGVKGYARSMPTGAAVDRVAKANNKE 346 (499)
Q Consensus 267 l~~~v~~~~adlgia~D~DgDRl~vvd~~G~~l~~d~~~~lla~~ll~~~~~~~~~~~~vv~~~~ss~~l~~ia~~~g~~ 346 (499)
+.+.+++.+||+|+++||||||++++|++|+++++|++++|+++++++. ++...+|.++.||.+++++++++|++
T Consensus 223 l~~~v~~~~adlGia~DgDaDR~~~vd~~G~~l~gd~~~al~a~~l~~~-----~~~~~vV~~~~~s~~~~~~~~~~g~~ 297 (443)
T PRK14320 223 IKKAVKEQKADLGISLDGDADRIIIVDENGQEIDGDGILNILAQYSDIC-----GGTNGIVGTQMTNMSYENHYRANKIP 297 (443)
T ss_pred HHHHHHHcCCCEEEEECCCCceEEEECCCCcccCHHHHHHHHHHHHHHh-----CCCCCEEEecCCcHHHHHHHHHCCCC
Confidence 9999999999999999999999999999999999999999999998641 22235888888888999999999999
Q ss_pred EEEeecchhHHhhhhhccCceEEEEecCCC-CCCCccCCchHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCceEeeecc
Q psy5979 347 LFEVPTGWKYFGNLMDAGRLSLCGEESFGT-GSDHIREKDGIWAVLAWLSVVEHTGKPVEEILKSHWKQYGRNYFTRYDY 425 (499)
Q Consensus 347 v~~t~tG~k~i~~~~~~~~~~~g~Eesgg~-~~~~~~~~Dgi~a~l~lle~la~~~~~L~ell~~lp~~~g~~~~~~~~~ 425 (499)
+++||||+++|+++|.+.+++||||+|||+ +++|.+++|||++++++||+|++++++|++++... .++.+. .
T Consensus 298 ~~~t~vG~~~i~~~m~~~~~~~ggE~sG~~~~~~~~~~~Dgi~a~~~lle~la~~~~~ls~l~~~~----~~~~~~---~ 370 (443)
T PRK14320 298 FIRSKVGDRYVLEDLVKYGYKIGGESSGHVINLNFGTTGDGLFTAIQLLAIFSQADKPVSEFKLQG----ELMQQT---L 370 (443)
T ss_pred EEEecCchHHHHHHHHhCCCcEeecCCccEEccCCCCcCCHHHHHHHHHHHHHHcCCCHHHHhccc----ccCceE---E
Confidence 999999999999999999999999999997 78899999999999999999999999999999431 111112 2
Q ss_pred ccCCchhHHH--HHHHHHhhcCCCCcccccccCCCCcceecccCCCeEEEEeeCCeEEEEeecCCcccccce
Q psy5979 426 ENCSAAPCNQ--MMDELEKKVSAPEFKGVTLSAEGRSGSWWRQEKQGVRSAISQTGLVHIQIIRNRQFRRHV 495 (499)
Q Consensus 426 ~~~~~~~k~~--vm~~l~~~~~~~~~~g~~~~~~~~~~~~~v~~iDGik~~~~d~~Wvlir~s~~~~~~~~~ 495 (499)
+.|+|+.+++ .++++. ..+||+++.++++||+|||||++.|.=|..
T Consensus 371 ~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~gW~LiRpS~teP~~rv~ 418 (443)
T PRK14320 371 INVPLTKKVAREDLQKVA------------------------SDVNDVEKRLGNRGRVLLRPSGTEPVLRVM 418 (443)
T ss_pred EEEEecCCCCcchhHHHH------------------------HHHHHHHhhhCCCceEEEecCCCCceEEEE
Confidence 2466654433 222221 124455554434589999999999975543
No 30
>PRK14322 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=8.2e-72 Score=587.52 Aligned_cols=391 Identities=23% Similarity=0.276 Sum_probs=322.1
Q ss_pred CCCCCCeEEEeCCcccccchhhHHHHHhhCCCceEEEeecCCcchHHHHHHHHHHHHHCCCeEEEeCCCcccchhHHHHH
Q psy5979 17 DKLKGSVLVVGGDGRYFGDVAVDKIIKISGIRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSAL 96 (499)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~g~~pTP~~~fa 96 (499)
||.-|.. +-++..+-.|.|||++++ .+ +|+||||+|.+|++|++++++||+++|++|+++ |.+|||+++|+
T Consensus 12 RG~~~~~--ltpe~~~~lg~a~~~~l~---~~-~VvVg~D~R~ss~~l~~a~~~gL~s~G~~V~~~---g~~pTP~~~~a 82 (429)
T PRK14322 12 RGVFGET--LTDELAFKVGKALGEIVG---EG-KVIVGKDTRVSGDSLEAAISAGLTSMGVDVLLC---GILPTPAVALL 82 (429)
T ss_pred ceecCCC--cCHHHHHHHHHHHhEEec---CC-cEEEEeCCCcCHHHHHHHHHHHHHHCCCeEEEe---cCcCHHHHHHH
Confidence 4544443 223445555677787775 33 499999999999999999999999999999999 99999999999
Q ss_pred HHHcCCccceEEcCCCCCCCCCCCceeEEEcCCCCCCChhHHHHHHHHHHhhhccCcCCCcccccccccCccccccCCcc
Q psy5979 97 IRKHQVTGGIVLTASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITTQIKTYSIVPDLKVDITSIGSSSYEVDGAQF 176 (499)
Q Consensus 97 v~~~~~~gGI~ITaSHNP~~~~~~nGiK~~~~~G~~~~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~ 176 (499)
+++++ +||||||||||| ++||||||+ ++|.+++++.+++|++++.+ ++|.+. . .+|.
T Consensus 83 v~~~~-~gGI~ITaSHnP---~~~nGiK~~-~~G~~i~~~~~~~ie~~~~~-~~~~~~-----~--~~g~---------- 139 (429)
T PRK14322 83 TRITR-SFGVVISASHNP---PEYNGIKVL-KGGYKIPDEMEVEIEERIES-GYFPVR-----S--VVGR---------- 139 (429)
T ss_pred HhccC-CceEEEECCCCC---hHhCCEEEe-cCCCcCCHHHHHHHHHHHhc-CCCccc-----c--Ccee----------
Confidence 99885 899999999999 899999999 89999999999999988765 444311 0 1222
Q ss_pred eEEEe-CcHHHHHHHHHhhcCchhHHhhhcCCCCCCCcEEEEcCCCCCChHHHHHHHHHhcCCCcceeeecccCCCCCCC
Q psy5979 177 QVDVI-DSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINAMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGGH 255 (499)
Q Consensus 177 ~~~~~-d~~~~Y~~~l~~~i~~~~i~~~~~~~~~~~~lkVvvD~~~G~~~~~~~~il~~~lG~~~~~~v~~~~d~~F~~~ 255 (499)
+... +..+.|++.+++.++. ++ .+++|||+||+||+++.+++++| ++|||+++ .+|++||+.|+.
T Consensus 140 -~~~~~~~~~~Y~~~l~~~v~~--~~--------~~~~kVvvD~~nG~~~~~~~~ll-~~lg~~v~-~ln~~~dg~~~~- 205 (429)
T PRK14322 140 -TKSFREGRDMYIGAVLEMFRD--LD--------LTGEMVSLDLANGATTTTAKEVF-EFLGAKVE-VFNDSQDGLLIN- 205 (429)
T ss_pred -EEeccchHHHHHHHHHHhhcc--cc--------cCCCEEEEECCCChHHHHHHHHH-HHcCCEEE-EECCcCCCCCCC-
Confidence 3333 5678999999988752 21 15799999999999999999999 99999986 699999999974
Q ss_pred CCCCCcccHHHHHHHHHhCCCcEEEeeCCCCCeeEEEccCceEeCCCcHHHHHHHHHhcCchhhhcCccceeeeccchHH
Q psy5979 256 HPDPNLTYAADLVQAMQAGDFDLGAAFDGDGDRNMVLGKKAFFVNPSDSLAVLAAHLDSIPYFKKTGVKGYARSMPTGAA 335 (499)
Q Consensus 256 ~p~P~~~~l~~l~~~v~~~~adlgia~D~DgDRl~vvd~~G~~l~~d~~~~lla~~ll~~~~~~~~~~~~vv~~~~ss~~ 335 (499)
++|.++++.++.+.|+ ++|+||++||||||++++|++|+++++|++++|++.++++. ...+...||.|+.||++
T Consensus 206 -~~~~~~~l~~l~~~v~--~~dlGia~DgD~DR~~~vd~~G~~i~~d~~~~l~a~~l~~~---~~~~~~~vV~~v~ss~~ 279 (429)
T PRK14322 206 -QGCGATHPRFLAEEMK--NGKVGFTFDGDGDRVIAVDEERNVVNGDRIIGILAVGLKEE---GRLNSDTVVGTVMTNGG 279 (429)
T ss_pred -CCCCcCCHHHHHHHHH--hcCEEEEEcCCCceEEEECCCCcEEChHHHHHHHHHHHHHh---cCCCCCeEEEeecCchH
Confidence 3344578888988887 46999999999999999999999999999999999999753 11111369999999999
Q ss_pred HHHHHHHCCCcEEEeecchhHHhhhhhccCceEEEEecCCC-CCCCccCCchHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q psy5979 336 VDRVAKANNKELFEVPTGWKYFGNLMDAGRLSLCGEESFGT-GSDHIREKDGIWAVLAWLSVVEHTGKPVEEILKSHWKQ 414 (499)
Q Consensus 336 l~~ia~~~g~~v~~t~tG~k~i~~~~~~~~~~~g~Eesgg~-~~~~~~~~Dgi~a~l~lle~la~~~~~L~ell~~lp~~ 414 (499)
++++++++|+++++||||++||+++|.+.+++||||+|||+ ++++.+++|||++++++||+|+.++++|+++++++|+
T Consensus 280 l~~~a~~~g~~v~~t~vG~~~i~~~m~~~~~~~ggE~sG~~~~~~~~~~~Dgi~a~l~lle~la~~~~~Ls~l~~~lp~- 358 (429)
T PRK14322 280 LEDFLKERGIKLLRTKVGDKYVLEKMLESGANLGGERSGHIIILDRSTTGDGLITALELMRVLKRSGRNLSDFAKEIPD- 358 (429)
T ss_pred HHHHHHHcCCeEEEeCCccHHHHHHHhhcCcceeccCCceEEecCCCCCCcHHHHHHHHHHHHHHhCCCHHHHHhhchh-
Confidence 99999999999999999999999999999999999999997 7899999999999999999999999999999999885
Q ss_pred hCCceEeeeccccCCc--hhHHHHHHHHHhhcCCCCcccccccCCCCcceecccCCCeEEEEeeCCeEEEEeecCCcccc
Q psy5979 415 YGRNYFTRYDYENCSA--APCNQMMDELEKKVSAPEFKGVTLSAEGRSGSWWRQEKQGVRSAISQTGLVHIQIIRNRQFR 492 (499)
Q Consensus 415 ~g~~~~~~~~~~~~~~--~~k~~vm~~l~~~~~~~~~~g~~~~~~~~~~~~~v~~iDGik~~~~d~~Wvlir~s~~~~~~ 492 (499)
| ++... .+.|+| +.++++|+++.+.. + +||+|+|||||++.|.=
T Consensus 359 ~---~~~~~-~v~~~~~~~~~~~~~~~~~~~~------------------------~------~~g~w~lvRpS~teP~i 404 (429)
T PRK14322 359 Y---PQITK-NVRRTERMSLENENLRKIVEES------------------------T------SRGYRVVIRPSGTEPVV 404 (429)
T ss_pred c---Ceeee-EeeeccccccchHHHHHHHHHh------------------------c------CCCcEEEEccCCCCcEE
Confidence 2 22223 346888 55677777654321 0 34579999999999964
Q ss_pred cc
Q psy5979 493 RH 494 (499)
Q Consensus 493 ~~ 494 (499)
|.
T Consensus 405 rv 406 (429)
T PRK14322 405 RI 406 (429)
T ss_pred EE
Confidence 43
No 31
>KOG0625|consensus
Probab=100.00 E-value=9.4e-69 Score=525.16 Aligned_cols=455 Identities=59% Similarity=1.031 Sum_probs=412.6
Q ss_pred CchhhHHHHHHHhh-cCCCCCCeEEEeCCcccccchhhHHHHHhhCCCceEEEeecCCcchHHHHHHHHHHHHHCCCeEE
Q psy5979 2 HYTENFIQSILTAL-GDKLKGSVLVVGGDGRYFGDVAVDKIIKISGIRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKL 80 (499)
Q Consensus 2 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~ 80 (499)
+|||||||||+.|. ..+.+|.++|+|||+||++ ....+.+++.-+++|+.=+
T Consensus 34 nY~eNfvQa~~~a~~~~~~kgatLVVGGDGRyy~---------------------------~~a~~~I~~iaAaNGv~rl 86 (558)
T KOG0625|consen 34 NYTENFVQAIMNALPGEKSKGATLVVGGDGRYYN---------------------------KEAIQIIAKIAAANGVGRL 86 (558)
T ss_pred chHHHHHHHHHhccccccccCceEEEcCCCcchh---------------------------HHHHHHHHHHHhhcCcceE
Confidence 79999999999999 5999999999999999999 7777888888899999999
Q ss_pred EeCCCcccchhHHHHHHHHc-CCccceEEcCCCCCCCCCCCceeEEEcCCCCCCChhHHHHHHHHHHhhhccCcCCCccc
Q psy5979 81 IVGQNGILSTPAVSALIRKH-QVTGGIVLTASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITTQIKTYSIVPDLKV 159 (499)
Q Consensus 81 ~~~~~g~~pTP~~~fav~~~-~~~gGI~ITaSHNP~~~~~~nGiK~~~~~G~~~~~~~~~~Ie~~~~~~~~~~~~~~~~~ 159 (499)
.++++|+++||++|.-++++ .+.|||+.||||||.+|.++-||||.-++|+|.++.++.+|.++-..+++|..++++..
T Consensus 87 ivGqnGiLSTPAvS~iIRk~~ka~GGiILTASHnPGGP~~DfGIKfN~~NGgPAPesvTdkIy~itk~i~eyki~~~~~i 166 (558)
T KOG0625|consen 87 IVGQNGILSTPAVSCIIRKYIKAGGGIILTASHNPGGPEGDFGIKFNLENGGPAPESVTDKIYEITKTISEYKIAKDPKI 166 (558)
T ss_pred EeccCCcccchHHHHHHHhhcccCceEEEEeccCCCCCCCccceEEecCCCCCChHHHHHHHHHhhhhhhhceeecCccc
Confidence 99999999999999999997 66788999999999888899999999999999999999999999988889988888788
Q ss_pred ccccccCccccccCCcceEEEeCcHHHHHHHHHhhcCchhHHhhhcCCCCCCCcEEEEcCCCCCChHHHHHHHHHhcCCC
Q psy5979 160 DITSIGSSSYEVDGAQFQVDVIDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINAMHGVTGPYVKKIFLEELGAQ 239 (499)
Q Consensus 160 ~~~~ig~~~~~~~~~~~~~~~~d~~~~Y~~~l~~~i~~~~i~~~~~~~~~~~~lkVvvD~~~G~~~~~~~~il~~~lG~~ 239 (499)
+...+|+..++ .+..++.+|..+.|++.+++.+|++.|+++++++ +++|+.+|+|||+++.+..++|+++||+.
T Consensus 167 Dls~vG~~~~~---gpf~VeviDpv~~Yv~lmk~IFDF~~ik~lls~~---~~~k~~~DamhGvtGpY~~~IfvdelGa~ 240 (558)
T KOG0625|consen 167 DLSTVGKTSFD---GPFTVEVIDPVKDYVNLMKEIFDFDLIKSLLSGP---KKLKFRFDAMHGVTGPYVKAIFVDELGAP 240 (558)
T ss_pred chhhhcccccc---CCeeEEEeccHHHHHHHHHHHhCHHHHHHHhcCC---CCceEEEeecccccchhhhHHHHhhhCCC
Confidence 88889987663 5667888899999999999999999999988753 68999999999999999999999999998
Q ss_pred cceeeecccCCCCCCCCCCCCcccHHHHHHHHHhCCCcEEEeeCCCCCeeEEEccCceEeCCCcHHHHHHHHHhcCchhh
Q psy5979 240 PDNAVNTTPLPDFGGHHPDPNLTYAADLVQAMQAGDFDLGAAFDGDGDRNMVLGKKAFFVNPSDSLAVLAAHLDSIPYFK 319 (499)
Q Consensus 240 ~~~~v~~~~d~~F~~~~p~P~~~~l~~l~~~v~~~~adlgia~D~DgDRl~vvd~~G~~l~~d~~~~lla~~ll~~~~~~ 319 (499)
.-.++||.|-|+|++.+|+|+.....+|.+.|.+.+.|+|.|+||||||-+++-.+|.+++|.+.++++|.++..-||++
T Consensus 241 ~~~~~n~~Pl~DFGG~HPDPNLTYAk~LV~rv~~~~~~fGAA~DGDGDRNMIlG~~~fFVtPsDSvAiIA~na~~IPYF~ 320 (558)
T KOG0625|consen 241 ASSLQNCVPLEDFGGGHPDPNLTYAKDLVDRVDRGEIDFGAAFDGDGDRNMILGKNGFFVTPSDSVAIIAANAEAIPYFR 320 (558)
T ss_pred hHHhccCeeccccCCCCCCCchhhHHHHHHHhccCCCcccccccCCCcceeeeccCceeeccchhHHHHHhcchhcchhh
Confidence 65468999999999999999999999999999999999999999999999999999999999999999999988778888
Q ss_pred hcCccceeeeccchHHHHHHHHHCCCcEEEeecchhHHhhhhhccCceEEEEecCCCCCCCccCCchHHHHHHHHHHHHH
Q psy5979 320 KTGVKGYARSMPTGAAVDRVAKANNKELFEVPTGWKYFGNLMDAGRLSLCGEESFGTGSDHIREKDGIWAVLAWLSVVEH 399 (499)
Q Consensus 320 ~~~~~~vv~~~~ss~~l~~ia~~~g~~v~~t~tG~k~i~~~~~~~~~~~g~Eesgg~~~~~~~~~Dgi~a~l~lle~la~ 399 (499)
+.+..++..+..||.++|.+|+++|.++.+||||+|+..+.|...+..++||||.|-.++|.++|||++|.|.+|.+|+.
T Consensus 321 ~~Gv~GfARSmPTs~AlDrVak~~gl~~yEvPTGWKfF~nLmDAgklsiCGEESFGTGSdHIREKDGiWAvlaWlsIlA~ 400 (558)
T KOG0625|consen 321 KQGVKGFARSMPTSGALDRVAKKLGLPVYEVPTGWKFFGNLMDAGKLSICGEESFGTGSDHIREKDGIWAVLAWLSILAH 400 (558)
T ss_pred hcCcchhhhcCCchhHHHHHHHHcCCceEEcCchHHHHHhhhcccceeecccccccCCccccccccchhhHHHHHHHHHh
Confidence 88777799999999999999999999999999999999999999999999999999989999999999999999999998
Q ss_pred cCCC-HHHHHHHHHHHhCCceEeeeccccCCchhHHHHHHHHHhhcCCCCcccccccC----------CCCccee----c
Q psy5979 400 TGKP-VEEILKSHWKQYGRNYFTRYDYENCSAAPCNQMMDELEKKVSAPEFKGVTLSA----------EGRSGSW----W 464 (499)
Q Consensus 400 ~~~~-L~ell~~lp~~~g~~~~~~~~~~~~~~~~k~~vm~~l~~~~~~~~~~g~~~~~----------~~~~~~~----~ 464 (499)
...+ +.+++.+.+++||+.+++|.++..|+.+..+++|+.|++.... .+.|.++.. ++..|.. .
T Consensus 401 ~k~~~vedI~~~~W~~YGR~fftRYDYE~~e~e~ank~m~~l~a~~~~-~~vg~~~~~~~~~y~V~~ad~F~Y~DPvDGS 479 (558)
T KOG0625|consen 401 NKQNVVEDIVKEHWAKYGRNFFTRYDYEEVEAEGANKMMEDLEALVSD-SFVGKSFSPGDEVYKVAKADDFEYTDPVDGS 479 (558)
T ss_pred cccccHHHHHHHHHHHhCccceeecchhhcChHhHHHHHHHHHHHhcc-ccccccccCCCceEEEEecCCceecCCCCCc
Confidence 6554 9999999999999999999999999999999999999988754 444444332 2333433 3
Q ss_pred ccCCCeEEEEeeCCeEEEEeecCCcc
Q psy5979 465 RQEKQGVRSAISQTGLVHIQIIRNRQ 490 (499)
Q Consensus 465 v~~iDGik~~~~d~~Wvlir~s~~~~ 490 (499)
++..+|+|+.|+||+-+.+|-|++--
T Consensus 480 vs~~QGlri~F~dGsR~VfRLSGTGS 505 (558)
T KOG0625|consen 480 VSKKQGLRIVFEDGSRIVFRLSGTGS 505 (558)
T ss_pred ccccCceEEEEcCCcEEEEEeccCCC
Confidence 78889999999999999999998753
No 32
>PRK14319 glmM phosphoglucosamine mutase; Provisional
Probab=100.00 E-value=1.2e-68 Score=563.71 Aligned_cols=344 Identities=22% Similarity=0.265 Sum_probs=289.2
Q ss_pred CCCCCCeEEEeCCcccccchhhHHHHHhhCCCceEEEeecCCcchHHHHHHHHHHHHHCCCeEEEeCCCcccchhHHHHH
Q psy5979 17 DKLKGSVLVVGGDGRYFGDVAVDKIIKISGIRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSAL 96 (499)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~g~~pTP~~~fa 96 (499)
||.-|..++- +..+..|.|||++++ ++|+||||+|.+|++|++++++||+++|++|+++ |.+|||+++|+
T Consensus 10 RG~~~~~ltp--e~~~~lg~a~g~~~~-----~~V~Vg~D~R~ss~~l~~a~~~gL~s~G~~V~d~---g~~pTP~~~~~ 79 (430)
T PRK14319 10 RGVVNEFLTP--EIAFRLGNALGNMVD-----KKIFIAKDTRASGDMLEAALVAGITSAGADVYRC---GVLPTPALALI 79 (430)
T ss_pred ceecCCCcCH--HHHHHHHHHHHhccC-----CcEEEEeCCCCChHHHHHHHHHHHHHCCCeEEEe---CCcCcHHHHHH
Confidence 5554444333 444555778888875 3699999999999999999999999999999998 99999999997
Q ss_pred HHHcCCccceEEcCCCCCCCCCCCceeEEEcCCCCCCChhHHHHHHHHHHhhhccCcCCCcccccccccCccccccCCcc
Q psy5979 97 IRKHQVTGGIVLTASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITTQIKTYSIVPDLKVDITSIGSSSYEVDGAQF 176 (499)
Q Consensus 97 v~~~~~~gGI~ITaSHNP~~~~~~nGiK~~~~~G~~~~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~ 176 (499)
++..+ .||||||||||| ++||||||+. +|.+++++.+++||+.. ++|++. .++.+|.
T Consensus 80 ~~~~~-~gGi~ItaSHnp---~~~ngiK~~~-~G~~i~~~~~~~ie~~~---~~~~~~-----~~~~~g~---------- 136 (430)
T PRK14319 80 TKLED-AAGVMISASHNP---PEYNGLKVLM-RGYKLPDEVEERIEKEM---NEIHYS-----PYNEVGC---------- 136 (430)
T ss_pred HhccC-ceEEEEEeCCCC---hHHCCEEEec-CCCCCCHHHHHHHHHHH---hccCCc-----ccccCee----------
Confidence 66544 599999999999 8999999995 89999999999998763 444322 1223332
Q ss_pred eEEEe-CcHHHHHHHHHhhcCchhHHhhhcCCCCCCCcEEEEcCCCCCChHHHHHHHHHhcCCCcceeeecccCCCCCCC
Q psy5979 177 QVDVI-DSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINAMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGGH 255 (499)
Q Consensus 177 ~~~~~-d~~~~Y~~~l~~~i~~~~i~~~~~~~~~~~~lkVvvD~~~G~~~~~~~~il~~~lG~~~~~~v~~~~d~~F~~~ 255 (499)
+... +..+.|++.+++.++. ++ .+++|||+||+||+++.+++++| ++|||+++ .+|++|||.|++.
T Consensus 137 -~~~~~~~~~~Y~~~l~~~~~~--~~--------~~~~kvvvD~~nGa~~~~~~~ll-~~Lg~~v~-~ln~~~dg~~~~~ 203 (430)
T PRK14319 137 -VIDYKLAFEEYFNYIKQQYEG--LD--------LSGIKIVVDVANGATYELNPYIL-EYFGAKVE-VVNNTPDGFNINV 203 (430)
T ss_pred -EEeccchHHHHHHHHHHhcCc--cc--------cCCCEEEEECCCChHHHHHHHHH-HHcCCEEE-EECCCCCCCCCCC
Confidence 3333 4578899999998762 22 15899999999999999999999 99999987 6999999998753
Q ss_pred CCCCCcccHHHHHHHHHhCCCcEEEeeCCCCCeeEEEccCceEeCCCcHHHHHHHHHhcCchhhhcCccceeeeccchHH
Q psy5979 256 HPDPNLTYAADLVQAMQAGDFDLGAAFDGDGDRNMVLGKKAFFVNPSDSLAVLAAHLDSIPYFKKTGVKGYARSMPTGAA 335 (499)
Q Consensus 256 ~p~P~~~~l~~l~~~v~~~~adlgia~D~DgDRl~vvd~~G~~l~~d~~~~lla~~ll~~~~~~~~~~~~vv~~~~ss~~ 335 (499)
. |.+++++++.+.+. ++|+|+++||||||++++|++|+++++|++++|++.++++. ...+...||.|+.||.+
T Consensus 204 ~--~~~~~~~~l~~~v~--~~dlGia~DgDaDR~~~vd~~G~~i~~d~~~~l~a~~ll~~---~~~~~~~vV~~v~ss~~ 276 (430)
T PRK14319 204 D--CGSTHPENAKEKIT--NHKIAILHDGDGDRCIFLDEKGQEFHGDKIIGLTAKHLKKE---GRLKNDVVVGTILSNMG 276 (430)
T ss_pred C--CCCCCHHHHHHHHH--hcCEEEEEcCCCceEEEECCCCCEeChhHHHHHHHHHHHHh---CCCCCCeEEEeecCchH
Confidence 3 33467777877774 46999999999999999999999999999999999998752 11111359999999999
Q ss_pred HHHHHHHCCCcEEEeecchhHHhhhhhccCceEEEEecCCC-CCCCccCCchHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q psy5979 336 VDRVAKANNKELFEVPTGWKYFGNLMDAGRLSLCGEESFGT-GSDHIREKDGIWAVLAWLSVVEHTGKPVEEILKSHWK 413 (499)
Q Consensus 336 l~~ia~~~g~~v~~t~tG~k~i~~~~~~~~~~~g~Eesgg~-~~~~~~~~Dgi~a~l~lle~la~~~~~L~ell~~lp~ 413 (499)
++++++++|+++++||||+++|+++|.+.+++||||+|||+ +++|.+++|||+++++++|+|+.++++|+++++++|.
T Consensus 277 ~~~~~~~~g~~v~~t~~G~~~i~~~m~~~~~~~ggE~sG~~~f~~~~~~~Dgi~a~l~lle~l~~~~~~ls~l~~~~p~ 355 (430)
T PRK14319 277 LEVFLKNNGIKVVRTKVGDRYVLEEMLKLNATLGGERSGHIIYLDKSTTGDGLITALETLSVMVKSGKKLSDLSNEIPD 355 (430)
T ss_pred HHHHHHHCCCcEEEeCCchHHHHHHHHHcCCEEEEcccceEEEhhccCCCcHHHHHHHHHHHHHHhCCCHHHHHhhccc
Confidence 99999999999999999999999999999999999999997 7899999999999999999999999999999999885
No 33
>KOG1220|consensus
Probab=100.00 E-value=5.3e-62 Score=498.72 Aligned_cols=424 Identities=23% Similarity=0.268 Sum_probs=319.5
Q ss_pred hHHHH-HhhC-CCceEEEeecCCcchHHHHHHHHHHHHHCCCeEEEeCCCcccchhHHHHHHHHcCCccceEEcCCCCCC
Q psy5979 38 VDKII-KISG-IRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQVTGGIVLTASHNPG 115 (499)
Q Consensus 38 ~~~~~-~~~~-~~~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~g~~pTP~~~fav~~~~~~gGI~ITaSHNP~ 115 (499)
++..+ .+.+ ++.+|+||||.|.+|+.||++++.+|..+|++|+++. ..+|||++.|++.+++|++||||||||||
T Consensus 90 ~a~yl~~~~~~~~~giviG~D~R~~S~~fA~l~a~vf~~~g~~v~lf~--~~v~TP~vpfav~~l~~dAgIMiTASHnP- 166 (607)
T KOG1220|consen 90 LAAYLKNQFPSKNLGIVIGHDGRYNSKRFAELVAAVFLLNGFKVYLFS--ELVPTPFVPFAVLTLGADAGIMITASHNP- 166 (607)
T ss_pred HHHHHHHhCCcccceEEEecCCccchHHHHHHHHHHHHhCCceEEEec--cccCCCcchhHHHHhccCceEEEeccCCc-
Confidence 33344 3334 2358999999999999999999999999999999992 49999999999999999999999999999
Q ss_pred CCCCCceeEEEcCCCCCCChhHHHHHHHHHHhhhccCcCCCcccccc--cccCccccccCCcceEEE-eC-cHHHHHHHH
Q psy5979 116 GPDNDFGIKFNTSNGGPAPDAVTENIYKITTQIKTYSIVPDLKVDIT--SIGSSSYEVDGAQFQVDV-ID-SVEVYLQLM 191 (499)
Q Consensus 116 ~~~~~nGiK~~~~~G~~~~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~--~ig~~~~~~~~~~~~~~~-~d-~~~~Y~~~l 191 (499)
+++||+|+|+++|+++.+...++|.+.... ++...+. .|+ .+... + +.+. .+ ....|++.+
T Consensus 167 --k~dNGyKvYwsNG~qii~PhD~~I~~~~~~--nl~p~~s---~wd~slv~s~-------~-l~~d~~~~~~~~~~e~~ 231 (607)
T KOG1220|consen 167 --KEDNGYKVYWSNGAQIISPHDEKISDSIEA--NLEPRLS---SWDDSLVKSH-------P-LLHDILAVIIPPYFEVY 231 (607)
T ss_pred --cccCCEEEEecCCccccCchhHHHHHHHHh--ccCcccc---hhhhhHHhcc-------h-hhcCchhccchHHHHHH
Confidence 899999999999998888888888887654 3332111 121 11110 0 0111 11 235688888
Q ss_pred HhhcCchhHHhhhcCCCCCCCcEEEEcCCCCCChHHHHHHHHHhcCCCcce--eeecccCCCCCC-CCCCCCcccHHHHH
Q psy5979 192 KEIFDFPKLQSLIKGSSGRPPFKLLINAMHGVTGPYVKKIFLEELGAQPDN--AVNTTPLPDFGG-HHPDPNLTYAADLV 268 (499)
Q Consensus 192 ~~~i~~~~i~~~~~~~~~~~~lkVvvD~~~G~~~~~~~~il~~~lG~~~~~--~v~~~~d~~F~~-~~p~P~~~~l~~l~ 268 (499)
++.++.- .++. +...++++|++++||+|+.++..+| +++|+...+ ..+++|||.||+ +.|||+++...++.
T Consensus 232 k~~l~~~-~~e~----n~~s~~~fVyta~hGvG~~F~~~al-~~~~~~~~~~v~eq~~Pdp~FPt~~~PNPEek~aL~ls 305 (607)
T KOG1220|consen 232 KELLPCF-HREA----NPLSGLKFVYTAGHGVGGFFVKKAL-EKLGLDTMISVPEQLEPDPMFPTVPFPNPEEKGALDLS 305 (607)
T ss_pred HhcCccH-hhhh----ccCCCceEEEecCCCccHHHHHHHH-HHhCCCccccchhhcCCCCCCCCCCCCCcchHHHHHHH
Confidence 8766531 1111 1246899999999999999999999 999998732 246899999999 99999886555554
Q ss_pred -HHHHhCCCcEEEeeCCCCCeeEEEcc---CceEeCCCcHHHHHHHHHhcCchhhhcCcc-----ceeeeccchHHHHHH
Q psy5979 269 -QAMQAGDFDLGAAFDGDGDRNMVLGK---KAFFVNPSDSLAVLAAHLDSIPYFKKTGVK-----GYARSMPTGAAVDRV 339 (499)
Q Consensus 269 -~~v~~~~adlgia~D~DgDRl~vvd~---~G~~l~~d~~~~lla~~ll~~~~~~~~~~~-----~vv~~~~ss~~l~~i 339 (499)
+.+.++++|+++++|||+||+++++. +++.+++|++.+||+.+.++. .++.. .+..+.+||.+++.|
T Consensus 306 ~~~a~~n~~dlvlanDpDaDR~avaek~~G~wr~fnGNElgALl~~~~le~----~k~~~~~~~~~ml~s~vSs~l~~~i 381 (607)
T KOG1220|consen 306 IKAALKNSADLVLANDPDADRFAVAEKVSGEWRVFNGNELGALLSWWVLEE----HKGSTPVQDVSMLNSTVSSGLTRFI 381 (607)
T ss_pred HHHHhccCCcEEEecCCCcchhhheeccCCcceeccchHHHHHHHHHHHHh----ccCCCccchhhhhhhHHHHHHHHHH
Confidence 66788999999999999999999998 668999999999999999863 22211 236778899999999
Q ss_pred HHHCCCcEEEeecchhHHhhhhhc----cC-ceEEEEecCCC-CCCCccCCchHHHHHHHHHHHH----HcCCCHHHHHH
Q psy5979 340 AKANNKELFEVPTGWKYFGNLMDA----GR-LSLCGEESFGT-GSDHIREKDGIWAVLAWLSVVE----HTGKPVEEILK 409 (499)
Q Consensus 340 a~~~g~~v~~t~tG~k~i~~~~~~----~~-~~~g~Eesgg~-~~~~~~~~Dgi~a~l~lle~la----~~~~~L~ell~ 409 (499)
|+..|++.++|+||||||+++..+ ++ ..||+|||+|+ ++.++++|||++++++++++++ ..+.+|++.+.
T Consensus 382 a~~eGf~~~~tltGFKwvgnrAieL~k~G~~v~fA~Ees~gym~g~~~~dkDGv~a~v~~a~~~~~lr~~~~~sl~e~l~ 461 (607)
T KOG1220|consen 382 AEIEGFHHEETLTGFKWVGNRAIELEKDGKEVHFAFEESIGYMFGENHLDKDGVSAAVKFASMACRLRLAGNLSLSEVLE 461 (607)
T ss_pred HHHhCceeeeccccchhhhHHHHHHHhcCceeeeeehhhcCcccccCccCcchHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 999999999999999999987643 33 78999999998 6779999999999999999865 36889999999
Q ss_pred HHHHHhCCceEeeeccccCC-chhHHHHHHHHHhhcC---CCCcccccccC---------CCCccee-----cc-cCCCe
Q psy5979 410 SHWKQYGRNYFTRYDYENCS-AAPCNQMMDELEKKVS---APEFKGVTLSA---------EGRSGSW-----WR-QEKQG 470 (499)
Q Consensus 410 ~lp~~~g~~~~~~~~~~~~~-~~~k~~vm~~l~~~~~---~~~~~g~~~~~---------~~~~~~~-----~v-~~iDG 470 (499)
+++++||++. ....+..|+ .+....+.+.|++... .|+..|..+.+ .+.+..+ .+ ..-+-
T Consensus 462 ~l~e~yg~~~-~~~~y~l~~~pe~~~~lf~~lR~~~~~~~yp~~ig~e~ev~~~rdlT~g~d~s~~d~ka~lpv~~ss~~ 540 (607)
T KOG1220|consen 462 DLYERYGYHS-TANSYRLCIDPEVIKALFDGLRNYDTGYIYPKKIGEEFEVVNVRDLTTGYDVSSPDHKAVLPVSTSSQM 540 (607)
T ss_pred HHHHhhCccc-eeeEEEEecCCchhHHHHHHHhhccccccccchhcccceeeeeeeceeeeecCCCCCccccccccccce
Confidence 9999999753 444444565 3445566777776543 24444422211 0100000 01 22334
Q ss_pred EEEEeeCCeEEEEeecCCcc
Q psy5979 471 VRSAISQTGLVHIQIIRNRQ 490 (499)
Q Consensus 471 ik~~~~d~~Wvlir~s~~~~ 490 (499)
|.+.+.+++|+++|.|+++|
T Consensus 541 vTf~~~~~~~~tlR~SgteP 560 (607)
T KOG1220|consen 541 VTFTFNNGGVVTLRTSGTEP 560 (607)
T ss_pred eEEeccCcEEEEEecCCCCc
Confidence 55566678999999999987
No 34
>cd03084 phosphohexomutase The alpha-D-phosphohexomutase superfamily includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this family include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). These enzymes play important and diverse roles in carbohydrate metabolism in organisms from bacteria to humans. Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=100.00 E-value=4.1e-58 Score=472.83 Aligned_cols=292 Identities=31% Similarity=0.521 Sum_probs=253.8
Q ss_pred chhHHHHHH-HHcCCccceEEcCCCCCCCCCCCceeEEEcCCCCCCChhHHHHHHHHHHhhhccCcCCCcccccccccCc
Q psy5979 89 STPAVSALI-RKHQVTGGIVLTASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITTQIKTYSIVPDLKVDITSIGSS 167 (499)
Q Consensus 89 pTP~~~fav-~~~~~~gGI~ITaSHNP~~~~~~nGiK~~~~~G~~~~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~ig~~ 167 (499)
-||.+.+.+ .-++..||||||||||| ++||||||++++|.+++++.+++||+.+.+ +++.+. ...+++.
T Consensus 15 itpe~~~~lg~a~g~~gGI~ITaSHnp---~~~nGiK~~~~~G~~i~~~~~~~Ie~~~~~-~~~~~~-----~~~~~~~- 84 (355)
T cd03084 15 ITPETAVALGQAIGSTGGIMITASHNP---PEDNGIKFVDPDGEPIASEEEKAIEDLAEK-EDEPSA-----VAYELGG- 84 (355)
T ss_pred CCHHHHHHHHHHHhcceeEEEEeCCCC---hhHCcEEEecCCCCcCCHHHHHHHHHHHhc-cccccc-----ccccCCC-
Confidence 356655443 33444599999999999 899999999999999999999999998765 455321 1111221
Q ss_pred cccccCCcceEEEeCcHHHHHHHHHhhcCchhHHhhhcCCCCCCCcEEEEcCCCCCChHHHHHHHHHhcCCCcceeeecc
Q psy5979 168 SYEVDGAQFQVDVIDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINAMHGVTGPYVKKIFLEELGAQPDNAVNTT 247 (499)
Q Consensus 168 ~~~~~~~~~~~~~~d~~~~Y~~~l~~~i~~~~i~~~~~~~~~~~~lkVvvD~~~G~~~~~~~~il~~~lG~~~~~~v~~~ 247 (499)
.+...+..+.|++.+.+.++.+.|++ +++||++||+||+++.+++++| ++|||+++ .+|+.
T Consensus 85 ---------~~~~~~~~~~Y~~~l~~~i~~~~i~~--------~~~kvvvD~~~G~~~~~~~~ll-~~lg~~v~-~~n~~ 145 (355)
T cd03084 85 ---------SVKAVDILQRYFEALKKLFDVAALSN--------KKFKVVVDSVNGVGGPIAPQLL-EKLGAEVI-PLNCE 145 (355)
T ss_pred ---------eEEEcCCHHHHHHHHHHhcChhhhcc--------CCCEEEEECCCchHHHHHHHHH-HHcCCcEE-EEcCc
Confidence 12334678999999999998766653 6899999999999999999999 99999987 69999
Q ss_pred cCCCCCCCCCCCC-cccHHHHHHHHHhCCCcEEEeeCCCCCeeEEEccCceEeCCCcHHHHHHHHHhcCchhhhcCccce
Q psy5979 248 PLPDFGGHHPDPN-LTYAADLVQAMQAGDFDLGAAFDGDGDRNMVLGKKAFFVNPSDSLAVLAAHLDSIPYFKKTGVKGY 326 (499)
Q Consensus 248 ~d~~F~~~~p~P~-~~~l~~l~~~v~~~~adlgia~D~DgDRl~vvd~~G~~l~~d~~~~lla~~ll~~~~~~~~~~~~v 326 (499)
|||.||.+.|+|. +++++++.+.|++.++|+|+++||||||++++|++|+++++|++++|+++++++. ..+...|
T Consensus 146 ~d~~F~~~~p~p~~~~~l~~l~~~v~~~~adlG~a~DgDgDRl~~vd~~G~~l~~d~~~al~~~~l~~~----~~~~~~v 221 (355)
T cd03084 146 PDGNFGNINPDPGSETNLKQLLAVVKAEKADFGVAFDGDADRLIVVDENGGFLDGDELLALLAVELFLT----FNPRGGV 221 (355)
T ss_pred CCCCCCCCCCCCCchhhHHHHHHHHHhcCCCEEEEEcCCCceeEEECCCCceeCHhHHHHHHHHHHHHh----cCCCCCE
Confidence 9999999999998 6899999999999999999999999999999999999999999999999998742 1223469
Q ss_pred eeeccchHHHHHHHHHCCCcEEEeecchhHHhhhhhccCceEEEEecCCC-CCCCccCCchHHHHHHHHHHHHHcCCCHH
Q psy5979 327 ARSMPTGAAVDRVAKANNKELFEVPTGWKYFGNLMDAGRLSLCGEESFGT-GSDHIREKDGIWAVLAWLSVVEHTGKPVE 405 (499)
Q Consensus 327 v~~~~ss~~l~~ia~~~g~~v~~t~tG~k~i~~~~~~~~~~~g~Eesgg~-~~~~~~~~Dgi~a~l~lle~la~~~~~L~ 405 (499)
|.|+.||.+++++|+++|++|++||||++|++++|.+.+++||||+|||+ +++|.+++|||++++++||+|+.++++|+
T Consensus 222 v~~v~ss~~i~~ia~~~g~~v~~t~~G~~~i~~~m~~~~~~~ggE~sg~~~~~~~~~~~Dgi~a~l~~le~la~~~~~Ls 301 (355)
T cd03084 222 VKTVVSSGALDKVAKKLGIKVIRTKTGFKWVGEAMQEGDVVLGGEESGGVIFPEFHPGRDGISAALLLLEILANLGKSLS 301 (355)
T ss_pred EEEccchHHHHHHHHHcCCcEEEecCcHHHHHHHHHhcCceEEecCcCCEEECCcCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999999999999999999999999999997 78999999999999999999999999999
Q ss_pred HHHHHHHH
Q psy5979 406 EILKSHWK 413 (499)
Q Consensus 406 ell~~lp~ 413 (499)
++++++|+
T Consensus 302 ~l~~~~p~ 309 (355)
T cd03084 302 ELFSELPR 309 (355)
T ss_pred HHHHHhhH
Confidence 99999885
No 35
>COG0033 Pgm Phosphoglucomutase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.4e-56 Score=442.72 Aligned_cols=435 Identities=33% Similarity=0.466 Sum_probs=340.4
Q ss_pred CCchhhHHHHHHHhhcCCCCCCeEEEeCCcccccchhhHHHHHhhCCCceEEEeecCCcchHHHHHHHHHHHHHCCCeEE
Q psy5979 1 EHYTENFIQSILTALGDKLKGSVLVVGGDGRYFGDVAVDKIIKISGIRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKL 80 (499)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~ 80 (499)
|||+++|+|||+.+...+-++.+++||+|+||++. ..-+.++++|+++|++++
T Consensus 34 e~~i~a~~Qai~d~~~~~~~~~~L~vG~D~~~~se---------------------------~a~~~~lev~aANgv~~i 86 (524)
T COG0033 34 ENHILAFIQAIADYRAEGGIGGPLVVGGDTHALSE---------------------------PAIQSALEVLAANGVEVI 86 (524)
T ss_pred HHHHHHHHHHHHHHHhccCCCCceEECCCcccccH---------------------------HHHHHHHHHHHhcCceEE
Confidence 68999999999999988889999999999999994 444555569999999999
Q ss_pred EeCCCcccchhHHHHHHH----HcCCcc-ceEEcCCCCCCCCCCCceeEEEcCCCCCCChhHHHHHHHHHHhhhccCcCC
Q psy5979 81 IVGQNGILSTPAVSALIR----KHQVTG-GIVLTASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITTQIKTYSIVP 155 (499)
Q Consensus 81 ~~~~~g~~pTP~~~fav~----~~~~~g-GI~ITaSHNP~~~~~~nGiK~~~~~G~~~~~~~~~~Ie~~~~~~~~~~~~~ 155 (499)
...+.|++|||.+|++++ +.++-+ ||+||+|||| |++-|||...++|+|.+++.++.|++..+ +.|...
T Consensus 87 v~~~~g~~~TPAaSh~I~t~n~k~k~~~~GIvlT~SHNP---P~D~GIKYN~~nGGPA~~~~T~aI~~ra~--~~~k~~- 160 (524)
T COG0033 87 VQGQGGFTPTPAASHAILTHNGKYKALADGIVLTPSHNP---PEDGGIKYNPPNGGPAPEKVTDAIEARAN--DLYKIG- 160 (524)
T ss_pred EecCCCccCchHHHHHHHhhcccccccCCeEEEcCCCCC---cccCCcccCCCCCCCCChHHHHHHHHHHH--HHHHhh-
Confidence 999999999999999999 556654 5999999999 79999999999999999999999998754 344322
Q ss_pred CcccccccccCccccccCCcceEEEeCcHHHHHHHHHhhcCchhHHhhhcCCCCCCCcEEEEcCCCCCChHHHHHHHHHh
Q psy5979 156 DLKVDITSIGSSSYEVDGAQFQVDVIDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINAMHGVTGPYVKKIFLEE 235 (499)
Q Consensus 156 ~~~~~~~~ig~~~~~~~~~~~~~~~~d~~~~Y~~~l~~~i~~~~i~~~~~~~~~~~~lkVvvD~~~G~~~~~~~~il~~~ 235 (499)
..+.+++|. .....+..++.+|.+..|++.|.+.+|+++||++ .+++++|+|||+++.++.+|+.++
T Consensus 161 --~~~v~r~~~---~~~~~~~~v~~~D~v~~Yv~~l~~i~D~daIr~~--------~~~l~~D~l~g~t~~Y~~~I~e~~ 227 (524)
T COG0033 161 --LLDVKRIGL---DQAYGSLTVKIIDPVKDYVELLEEIFDFDAIRKA--------GLRLGFDPLGGVTGPYWKAIAEKY 227 (524)
T ss_pred --hcCccccch---hhhcCcceeeeecchHHHHHHHHHhhcHHHHHHH--------HhhcccccccCccchhHHHHHHHh
Confidence 123444442 1222345577889999999999999999999984 578999999999999999999556
Q ss_pred cCCCcceeeecccCCCCCCCCCCCCcccHH---HHH-HHHH-hCCCcEEEeeCCCCCeeEEEccCceEeCCCcHHHHHHH
Q psy5979 236 LGAQPDNAVNTTPLPDFGGHHPDPNLTYAA---DLV-QAMQ-AGDFDLGAAFDGDGDRNMVLGKKAFFVNPSDSLAVLAA 310 (499)
Q Consensus 236 lG~~~~~~v~~~~d~~F~~~~p~P~~~~l~---~l~-~~v~-~~~adlgia~D~DgDRl~vvd~~G~~l~~d~~~~lla~ 310 (499)
++.-....-|..|.++|.+++|+|+..... .+. .++. +.+.|+|++.|+||||-+++....-+++|++.+++++.
T Consensus 228 ~~~~t~v~~~~~p~~~F~~l~~D~ni~~~~ss~~~ma~l~~~~d~~d~~aanD~DgDR~~Iv~~~~~~~nPn~~lAv~~~ 307 (524)
T COG0033 228 LLNLTGVNQNVDPTPDFMGLDPDGNIRMDCSSPCAMAGLLRLRDKYDFAAANDGDGDRHGIVTPGAGLMNPNHSLAVAIE 307 (524)
T ss_pred cCCchhhccCcccCccccCCCCCCCEeEecCcHHHHHHhhccccccccccccCCCcccceeecCCCcccCchHHHHHHHH
Confidence 665322123577889999999999753222 233 3333 37899999999999999999987789999999999999
Q ss_pred HHhcCchhhhcCccceeeeccchHHHHHHHHHCCCcEEEeecchhHHhhhhhccCceEEEEecCCC--C----CCCccCC
Q psy5979 311 HLDSIPYFKKTGVKGYARSMPTGAAVDRVAKANNKELFEVPTGWKYFGNLMDAGRLSLCGEESFGT--G----SDHIREK 384 (499)
Q Consensus 311 ~ll~~~~~~~~~~~~vv~~~~ss~~l~~ia~~~g~~v~~t~tG~k~i~~~~~~~~~~~g~Eesgg~--~----~~~~~~~ 384 (499)
|+...|.... +...|..|++||.++|++++++|..+++|||||||..+.+....+-||||||-|- . ..|...+
T Consensus 308 y~~~~~~~~~-g~~~v~ktl~sS~~iDRV~~~lGr~lyEvPvG~K~F~~~l~~g~~~~~GEESaGa~~lRek~g~Wa~~~ 386 (524)
T COG0033 308 YLFLHRPYWG-GIVAVGKTLVSSAAIDRVVAKLGRGLYEVPVGFKWFVDGLDAGSFGFGGEESAGASFLREKGGVWATDK 386 (524)
T ss_pred HHHhCCCccc-cceeeeeccccHHHHHHHHHHhCCceEEcCCcceeeeccccccceeecccccccccceecCCCceeeec
Confidence 9876532211 3356899999999999999999999999999999999999999999999999663 1 2356667
Q ss_pred chHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCceEeeeccccCCchhHHHHHHHHHhhcCCCCcccccccCCC-Ccce-
Q psy5979 385 DGIWAVLAWLSVVEHTGKPVEEILKSHWKQYGRNYFTRYDYENCSAAPCNQMMDELEKKVSAPEFKGVTLSAEG-RSGS- 462 (499)
Q Consensus 385 Dgi~a~l~lle~la~~~~~L~ell~~lp~~~g~~~~~~~~~~~~~~~~k~~vm~~l~~~~~~~~~~g~~~~~~~-~~~~- 462 (499)
|+++.+++-.|+.+..++..++..+++-.+||.+.|.+.+ | +...+++++|++..+ +..+++++..++ ..|.
T Consensus 387 ~~~Ilall~aei~a~t~~~~~~~y~~~~r~~~~~~Yervd---a--~aa~~~~a~L~~ls~-~~v~~t~l~g~~~~a~~~ 460 (524)
T COG0033 387 DGNILALLAAEITAVTGKIPQEHYAELGRNFGRPDYERVD---A--EAANAQKARLRKLSP-EMVSATTLAGDPITAYLT 460 (524)
T ss_pred hhHHHHHHhhhchhhhccCHHHHHHHHHHHhCcccHHHhc---C--chhHHHHHHHHhhCc-ccCCccccCCCcchhccc
Confidence 7777777777777788888888888888888866555553 2 334455666666554 233343333211 1111
Q ss_pred ---ecccCCCeEEEEeeCCeEEEEeecCCc
Q psy5979 463 ---WWRQEKQGVRSAISQTGLVHIQIIRNR 489 (499)
Q Consensus 463 ---~~v~~iDGik~~~~d~~Wvlir~s~~~ 489 (499)
-..+.+.|+|+.|++ ||+..|||++.
T Consensus 461 ~~~Gn~s~~~GLkV~~~n-g~fa~R~SGT~ 489 (524)
T COG0033 461 PAPGNGAAIGGLKVTTEN-GWFAARPSGTE 489 (524)
T ss_pred CCCCchhhcCceEEEeeC-cEEEEecCCcc
Confidence 146889999999998 69999999984
No 36
>cd03086 PGM3 PGM3 (phosphoglucomutase 3), also known as PAGM (phosphoacetylglucosamine mutase) and AGM1 (N-acetylglucosamine-phosphate mutase), is an essential enzyme found in eukaryotes that reversibly catalyzes the conversion of GlcNAc-6-phosphate into GlcNAc-1-phosphate as part of the UDP-N-acetylglucosamine (UDP-GlcNAc) biosynthetic pathway. UDP-GlcNAc is an essential metabolite that serves as the biosynthetic precursor of many glycoproteins and mucopolysaccharides. AGM1 is a member of the alpha-D-phosphohexomutase superfamily, which catalyzes the intramolecular phosphoryl transfer of sugar substrates. The alpha-D-phosphohexomutases have four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=100.00 E-value=6.3e-51 Score=433.45 Aligned_cols=343 Identities=15% Similarity=0.153 Sum_probs=266.6
Q ss_pred CCCceEEEeecCCcchHHHHHHHHHHHHHCCCeEEEeCCCcccchhHHHHHHHHcCCccceEEcCCCCCCCCCCCceeEE
Q psy5979 46 GIRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQVTGGIVLTASHNPGGPDNDFGIKF 125 (499)
Q Consensus 46 ~~~~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~g~~pTP~~~fav~~~~~~gGI~ITaSHNP~~~~~~nGiK~ 125 (499)
+.+.+|+||||+|.+|++|+++++++|.+.|++|+++ |.+|||+++|+++++++.| + .
T Consensus 100 ~~~~~V~vg~D~R~ss~~l~~a~~~gl~~~G~~V~d~---g~~~TP~~~~~v~~~~~~g---------~---~------- 157 (513)
T cd03086 100 SVPANVFVGRDTRPSGPALLQALLDGLKALGGNVIDY---GLVTTPQLHYLVRAANTEG---------A---Y------- 157 (513)
T ss_pred CCCCEEEEEeCCChhHHHHHHHHHHHHHHCCCeEEEc---cCcCcHHHHHHHHhcCCCC---------c---c-------
Confidence 3568999999999999999999999999999999998 9999999999999998764 2 1
Q ss_pred EcCCCCCCChhHHHHHHHHHHhhhccCcCCCcccccccccCccccccCCcceEEEeCcHHHHHHHHHhh----cC-chhH
Q psy5979 126 NTSNGGPAPDAVTENIYKITTQIKTYSIVPDLKVDITSIGSSSYEVDGAQFQVDVIDSVEVYLQLMKEI----FD-FPKL 200 (499)
Q Consensus 126 ~~~~G~~~~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~d~~~~Y~~~l~~~----i~-~~~i 200 (499)
+. .. .+.|++.+... ++ .+.+
T Consensus 158 ----~~-~~-------------------------------------------------~~~Y~~~l~~~f~~lv~~~~~~ 183 (513)
T cd03086 158 ----GE-PT-------------------------------------------------EEGYYEKLSKAFNELYNLLQDG 183 (513)
T ss_pred ----CC-cc-------------------------------------------------HHHHHHHHHHHHHHHHhhcccc
Confidence 00 00 01123332222 22 1222
Q ss_pred HhhhcCCCCCCCcEEEEcCCCCCChHHHHHHHHHhcC--CCcceeeecccCCCCCCCCCCCCcccHHHHHHHHHhCC---
Q psy5979 201 QSLIKGSSGRPPFKLLINAMHGVTGPYVKKIFLEELG--AQPDNAVNTTPLPDFGGHHPDPNLTYAADLVQAMQAGD--- 275 (499)
Q Consensus 201 ~~~~~~~~~~~~lkVvvD~~~G~~~~~~~~il~~~lG--~~~~~~v~~~~d~~F~~~~p~P~~~~l~~l~~~v~~~~--- 275 (499)
+ .+++||+|||+||+++.+++++| ++|| |+++ .+|++||+.| .++++|.+++++.+++.+++.+
T Consensus 184 ~--------~~~~kVvvD~aNGag~~~~~~ll-~~Lg~~~~v~-~in~~~dg~~-~~n~~~ga~~l~~l~~~v~~~~~~~ 252 (513)
T cd03086 184 G--------DEPEKLVVDCANGVGALKLKELL-KRLKKGLSVK-IINDGEEGPE-LLNDGCGADYVKTKQKPPRGFELKP 252 (513)
T ss_pred c--------cCCCEEEEECCCcHHHHHHHHHH-HHcCCCcEEE-EEccCCCCcc-cCCCCcccccHHHHHHHHHhcCCCC
Confidence 2 26899999999999999999999 9999 9987 6999999986 4556666899999998888776
Q ss_pred -CcEEEeeCCCCCeeEEEccCc----eEeCCCcHHHHHHHHHhcCchhhhc-C--ccceeeeccchHHHHHHHHH-CCCc
Q psy5979 276 -FDLGAAFDGDGDRNMVLGKKA----FFVNPSDSLAVLAAHLDSIPYFKKT-G--VKGYARSMPTGAAVDRVAKA-NNKE 346 (499)
Q Consensus 276 -adlgia~D~DgDRl~vvd~~G----~~l~~d~~~~lla~~ll~~~~~~~~-~--~~~vv~~~~ss~~l~~ia~~-~g~~ 346 (499)
+|+|++|||||||++++|++| +++++|++++|+++++++......+ + ...||.|+.|+..+.++.++ +|++
T Consensus 253 ~adlgiA~DGDADRl~~vd~~g~~~~~~l~GD~i~aL~a~~ll~~~~~~~~~~~~~~~VV~tv~sn~~~~~~l~~~~G~~ 332 (513)
T cd03086 253 PGVRCCSFDGDADRLVYFYPDSSNKFHLLDGDKIATLFAKFIKELLKKAGEELKLTIGVVQTAYANGASTKYLEDVLKVP 332 (513)
T ss_pred CccEEEEECCCCCcEEEEEecCCCceEEECHHHHHHHHHHHHHHhccccCCCCCCCcEEEEEeccchHHHHHHHHHcCce
Confidence 999999999999999999999 8999999999999999752000001 1 12589999888888887777 9999
Q ss_pred EEEeecchhHHhhhhhccCceEEEEecCC--C-CCCC------------------------------ccCCchHHHHHHH
Q psy5979 347 LFEVPTGWKYFGNLMDAGRLSLCGEESFG--T-GSDH------------------------------IREKDGIWAVLAW 393 (499)
Q Consensus 347 v~~t~tG~k~i~~~~~~~~~~~g~Eesgg--~-~~~~------------------------------~~~~Dgi~a~l~l 393 (499)
+++|+||+|||.++|++.++.+|||+||| + ++++ ...+|||++++++
T Consensus 333 ~~~t~vG~k~v~~~m~e~~~~~ggE~sGHgtvif~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~n~~~gDgi~~al~v 412 (513)
T cd03086 333 VVCTPTGVKHLHHAAEEFDIGVYFEANGHGTVLFSESALAKIEENSSLSDEQEKAAKTLLAFSRLINQTVGDAISDMLAV 412 (513)
T ss_pred EEEeCCcHHHHHHHHHHhCcceEEeccCCEEEEECchHHhhhhhhccccchhhhHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence 99999999999999999999999999999 6 6777 5589999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHhCCceEeeeccccCCchhHHHHHHHHHhhcCCCCcccccccCCCCcceecccCCCeEEE
Q psy5979 394 LSVVEHTGKPVEEILKSHWKQYGRNYFTRYDYENCSAAPCNQMMDELEKKVSAPEFKGVTLSAEGRSGSWWRQEKQGVRS 473 (499)
Q Consensus 394 le~la~~~~~L~ell~~lp~~~g~~~~~~~~~~~~~~~~k~~vm~~l~~~~~~~~~~g~~~~~~~~~~~~~v~~iDGik~ 473 (499)
+++|+..+++|+|+++.++ .|++.. ... .+..+.+.++.+. .+....+. .-++.+||+|+
T Consensus 413 l~~l~~~~~~lsel~~~y~-~~p~~~-~~v---~v~~~~~~~~~~~-e~~~~~p~--------------~l~~~iDG~~~ 472 (513)
T cd03086 413 ELILAALGWSPQDWDNLYT-DLPNRQ-LKV---KVPDRSVIKTTDA-ERRLVEPK--------------GLQDKIDAIVA 472 (513)
T ss_pred HHHHHHhCCCHHHHHhhch-hcCeee-eEE---EecCccchhhhhH-HhhccccH--------------HHHHHHHHHHh
Confidence 9999999999999999754 344321 122 2322333333222 11111100 23788999999
Q ss_pred EeeCCeEEEEeecCCccccccee
Q psy5979 474 AISQTGLVHIQIIRNRQFRRHVV 496 (499)
Q Consensus 474 ~~~d~~Wvlir~s~~~~~~~~~~ 496 (499)
.++| ||++||||++.|.=|.++
T Consensus 473 ~~~~-gr~lVRpSGTEp~iRvya 494 (513)
T cd03086 473 KYNN-GRAFVRPSGTEDVVRVYA 494 (513)
T ss_pred cCCC-eeEEEecCCCCcEEEEEE
Confidence 9987 899999999999866654
No 37
>PLN02895 phosphoacetylglucosamine mutase
Probab=100.00 E-value=3.6e-42 Score=365.14 Aligned_cols=334 Identities=15% Similarity=0.158 Sum_probs=248.1
Q ss_pred CCceEEEeecCCcchHHHHHHHHHHHHHCCCeEEEeCCCcccchhHHHHHHHHcCCccceEEcCCCCCCCCCCCceeEEE
Q psy5979 47 IRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQVTGGIVLTASHNPGGPDNDFGIKFN 126 (499)
Q Consensus 47 ~~~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~g~~pTP~~~fav~~~~~~gGI~ITaSHNP~~~~~~nGiK~~ 126 (499)
...+|+||||+|++|+.|+++++.||.+.|++|+++ |++|||+++|+++..+..
T Consensus 126 ~~~~V~vG~DtR~Ss~~l~~a~~~gl~~~G~~v~d~---G~~tTP~l~~~v~~~n~~----------------------- 179 (562)
T PLN02895 126 PPAEVLLGRDTRPSGPALLAAALKGVRAIGARAVDM---GILTTPQLHWMVRAANKG----------------------- 179 (562)
T ss_pred cCCEEEEEecCCCCHHHHHHHHHHHHHHCCCCEEEe---CcCCcHHHHHHHHhcCCC-----------------------
Confidence 356899999999999999999999999999999998 999999999999865421
Q ss_pred cCCCCCCChhHHHHHHHHHHhhhccCcCCCcccccccccCccccccCCcceEEEeCcHHHHHHHHHhhcCch-hHHhhhc
Q psy5979 127 TSNGGPAPDAVTENIYKITTQIKTYSIVPDLKVDITSIGSSSYEVDGAQFQVDVIDSVEVYLQLMKEIFDFP-KLQSLIK 205 (499)
Q Consensus 127 ~~~G~~~~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~d~~~~Y~~~l~~~i~~~-~i~~~~~ 205 (499)
|.+-...--+++. ..+..|.+..... .+.
T Consensus 180 ---~~~~e~~Y~~~l~-------------------------------------------~~f~~l~~~~~~~~~~~---- 209 (562)
T PLN02895 180 ---MKATESDYFEQLS-------------------------------------------SSFRALLDLIPNGSGDD---- 209 (562)
T ss_pred ---CCCcHHHHHHHHH-------------------------------------------HHHHHHHhcCCCccccc----
Confidence 1110000011111 1112222211110 000
Q ss_pred CCCCCCCcEEEEcCCCCCChHHHHHHHHHhcCCCcceeeecccCCCCCCCCCCCC-cccHHHHHHHHHhCCC---cEE--
Q psy5979 206 GSSGRPPFKLLINAMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDPN-LTYAADLVQAMQAGDF---DLG-- 279 (499)
Q Consensus 206 ~~~~~~~lkVvvD~~~G~~~~~~~~il~~~lG~~~~~~v~~~~d~~F~~~~p~P~-~~~l~~l~~~v~~~~a---dlg-- 279 (499)
....||+|||.||+++..+++++ +.||+.++..+|+.||+.| +.|+|. +++++.++ .+.+ ++ |+|
T Consensus 210 ----~~~~kvvVDcANGvg~~~~~~l~-~~Lg~~~i~~iN~~~dG~~--~lN~~cGad~v~~lq-~vp~-~~~~~d~G~~ 280 (562)
T PLN02895 210 ----RADDKLVVDGANGVGAEKLETLK-KALGGLDLEVRNSGKEGEG--VLNEGVGADFVQKEK-VPPT-GFASKDVGLR 280 (562)
T ss_pred ----cCCCEEEEECCCcHHHHHHHHHH-HHCCCcEEEEeecCCCCCC--CCCCCCccCcHHHHH-hhhc-cCCccCCCCc
Confidence 12468999999999999999999 9999987756899999887 456665 67888888 6666 77 999
Q ss_pred -EeeCCCCCeeEEEccCc-----eEeCCCcHHHHHHHHHhcCchhhh-c------C-----ccceeeeccchHHHHHHHH
Q psy5979 280 -AAFDGDGDRNMVLGKKA-----FFVNPSDSLAVLAAHLDSIPYFKK-T------G-----VKGYARSMPTGAAVDRVAK 341 (499)
Q Consensus 280 -ia~D~DgDRl~vvd~~G-----~~l~~d~~~~lla~~ll~~~~~~~-~------~-----~~~vv~~~~ss~~l~~ia~ 341 (499)
++|||||||++++|++| +++++|++++|+|.++.+. ++. . + ...||.|+.|+..+++..+
T Consensus 281 ~~sfDGDADRlv~~d~~g~~~~~~llDGDkI~~L~A~~l~~~--l~~~~~~~~~~~~~~~l~~gVVqTayaNgast~yl~ 358 (562)
T PLN02895 281 CASLDGDADRLVYFYVSSAGSKIDLLDGDKIASLFALFIKEQ--LRILNGNGNEKPEELLVRLGVVQTAYANGASTAYLK 358 (562)
T ss_pred ceEEcCCCCEEEEEEcCCCcccCeEeCHHHHHHHHHHHHHHH--hhhcccccccccccccCCCeEEEeccccHHHHHHHH
Confidence 99999999999999988 8999999999999998642 111 1 1 1269999999999999999
Q ss_pred H-CCCcEEEeecchhHHhhhhhccCceEEEEecCC--C-CCCCcc-----------------------------------
Q psy5979 342 A-NNKELFEVPTGWKYFGNLMDAGRLSLCGEESFG--T-GSDHIR----------------------------------- 382 (499)
Q Consensus 342 ~-~g~~v~~t~tG~k~i~~~~~~~~~~~g~Eesgg--~-~~~~~~----------------------------------- 382 (499)
+ +|++|++||||.|++.++|++.+..++||.||| + |+++..
T Consensus 359 ~~lg~~v~~t~tGvk~l~~~a~e~digvyfEaNGHGTviFs~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~~~~linq 438 (562)
T PLN02895 359 QVLGLEVVCTPTGVKYLHEAAAEFDIGVYFEANGHGTVLFSERFLDWLEAAAAELSSKAKGSEAHKAARRLLAVSRLINQ 438 (562)
T ss_pred HhcCCeEEEEeCchHHHHHHHHhcCceEEEccCCCeEEEEChHHHHHHhhhhhccccccccchhhHHHHHHHHHHHhhcC
Confidence 8 999999999999999999999999999999999 5 666554
Q ss_pred -CCchHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCceEeeecc-----ccCCchhHHHHH--HHHHhhcCCCCcccccc
Q psy5979 383 -EKDGIWAVLAWLSVVEHTGKPVEEILKSHWKQYGRNYFTRYDY-----ENCSAAPCNQMM--DELEKKVSAPEFKGVTL 454 (499)
Q Consensus 383 -~~Dgi~a~l~lle~la~~~~~L~ell~~lp~~~g~~~~~~~~~-----~~~~~~~k~~vm--~~l~~~~~~~~~~g~~~ 454 (499)
.+|||+++++++++|+..+++++|+++. ++.+|... ..... +.+.+.++ .++ ..|
T Consensus 439 ~vGDai~~~L~vl~iL~~~~~sl~e~~~~-y~dlP~~~-~kv~V~dr~~~~t~~~e~-~~v~P~~L-------------- 501 (562)
T PLN02895 439 AVGDALSGLLLVEAILQYRGWSLAEWNAL-YQDLPSRQ-LKVKVADRTAITTTDAET-VVVRPAGL-------------- 501 (562)
T ss_pred CccHHHHHHHHHHHHHHHhCCCHHHHHhh-CccCCcee-EeeEEccCccccccchhh-hcccHHHH--------------
Confidence 6999999999999999999999999985 33455432 21111 00111111 111 122
Q ss_pred cCCCCcceecccCCCeEEE-EeeCCeEEEEeecCCccccccee
Q psy5979 455 SAEGRSGSWWRQEKQGVRS-AISQTGLVHIQIIRNRQFRRHVV 496 (499)
Q Consensus 455 ~~~~~~~~~~v~~iDGik~-~~~d~~Wvlir~s~~~~~~~~~~ 496 (499)
.+.+| .++ .+++ ||++||||++.|.=|.++
T Consensus 502 ----------q~~ID-~~v~~~~~-Gr~lvRpSGTEp~vRv~~ 532 (562)
T PLN02895 502 ----------QDAID-AEVAKYPR-GRAFVRPSGTEDVVRVYA 532 (562)
T ss_pred ----------HHHHH-HHhcccCC-ceEEEEcCCCCcEEEEEE
Confidence 22344 455 5666 899999999999876654
No 38
>PTZ00302 N-acetylglucosamine-phosphate mutase; Provisional
Probab=100.00 E-value=1.4e-41 Score=363.19 Aligned_cols=290 Identities=17% Similarity=0.170 Sum_probs=225.8
Q ss_pred CceEEEeecCCcchHHHHHHHHHHHH-HCCCeEEEeCCCcccchhHHHHHHHHcCCccceEEcCCCCCCCCCCCceeEEE
Q psy5979 48 RSVLVVGGDGRYFGDVAVDKIIKISA-ANGVAKLIVGQNGILSTPAVSALIRKHQVTGGIVLTASHNPGGPDNDFGIKFN 126 (499)
Q Consensus 48 ~~~VvVg~D~R~~s~~~a~a~a~gL~-s~Gi~V~~~~~~g~~pTP~~~fav~~~~~~gGI~ITaSHNP~~~~~~nGiK~~ 126 (499)
...|+||||+|+||+.|++++++||. +.|++|+++ |++|||+++|+++..+.. |. +
T Consensus 152 ~~~V~vGrDtR~Ss~~L~~al~~gl~~~~G~~v~d~---G~~tTP~l~y~v~~~n~~-~~------~------------- 208 (585)
T PTZ00302 152 KAKVHVGRDTRPSSPELVSALLRGLKLLIGSNVRNF---GIVTTPQLHFLVAFANGL-GV------D------------- 208 (585)
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHHHHhcCCcEEEe---CCCCcHHHHHHHHHhCCC-cc------c-------------
Confidence 46799999999999999999999999 999999998 999999999999876431 10 0
Q ss_pred cCCCCCCChhHHHHHHHHHHhhhccCcCCCcccccccccCccccccCCcceEEEeCcHHHHHHHHHhhcCch-hHHhhhc
Q psy5979 127 TSNGGPAPDAVTENIYKITTQIKTYSIVPDLKVDITSIGSSSYEVDGAQFQVDVIDSVEVYLQLMKEIFDFP-KLQSLIK 205 (499)
Q Consensus 127 ~~~G~~~~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~d~~~~Y~~~l~~~i~~~-~i~~~~~ 205 (499)
-|.+-.+.--+++... +..|.+..... ... +.
T Consensus 209 --~~~~~e~~Y~~~~~~~-------------------------------------------f~~l~~~~~~~~~~~--~~ 241 (585)
T PTZ00302 209 --VVESSDELYYAYLLAA-------------------------------------------FKELYRTLQEGGPVD--LT 241 (585)
T ss_pred --cCCCcHHHHHHHHHHH-------------------------------------------HHHHHhhCCcccccc--cc
Confidence 1222111111111111 11111111100 000 00
Q ss_pred CCCCCCCcEEEEcCCCCCChHHHHHHHHHhc---CCCcceeeecccCCCCCCCCCCC-CcccHHHHHHHHHhCCCcEE--
Q psy5979 206 GSSGRPPFKLLINAMHGVTGPYVKKIFLEEL---GAQPDNAVNTTPLPDFGGHHPDP-NLTYAADLVQAMQAGDFDLG-- 279 (499)
Q Consensus 206 ~~~~~~~lkVvvD~~~G~~~~~~~~il~~~l---G~~~~~~v~~~~d~~F~~~~p~P-~~~~l~~l~~~v~~~~adlg-- 279 (499)
....-+|+|||+||+++..++++| ++| ||+++ .+|++||+.| +.|+| .+++++.+++.++..++|+|
T Consensus 242 ---~~~~~kVvVD~ANGvg~~~~~~ll-~~L~~~g~~v~-~in~~~dg~~--~lN~~cGad~vk~lq~~p~~~~ad~G~~ 314 (585)
T PTZ00302 242 ---QNNSKILVVDCANGVGGYKIKRFF-EALKQLGIEII-PININCDEEE--LLNDKCGADYVQKTRKPPRAMKEWPGDE 314 (585)
T ss_pred ---ccCCCeEEEECCCcHHHHHHHHHH-HHhhhCCCEEE-EEecCCCCCC--CCCCCCccccHHHHHHHHHhcCCCcCcc
Confidence 002358999999999999999999 999 78876 6999999876 34444 47899999999999999999
Q ss_pred ----EeeCCCCCeeEEEcc--Cc----eEeCCCcHHHHHHHHHhcCchhhh-cCcc----ceeeeccchHHHHHHHHH-C
Q psy5979 280 ----AAFDGDGDRNMVLGK--KA----FFVNPSDSLAVLAAHLDSIPYFKK-TGVK----GYARSMPTGAAVDRVAKA-N 343 (499)
Q Consensus 280 ----ia~D~DgDRl~vvd~--~G----~~l~~d~~~~lla~~ll~~~~~~~-~~~~----~vv~~~~ss~~l~~ia~~-~ 343 (499)
++|||||||++++|+ +| +++++|++++|+|.++.+. ++. .... .||.|+.|+.+..++.++ +
T Consensus 315 ~~~~~sfDGDADRlv~~d~~~~g~~~~~lldGDkI~~L~A~~l~~~--l~~~~~~~~l~igVVqTayaNgast~yl~~~l 392 (585)
T PTZ00302 315 ETRVASFDGDADRLVYFFPDKDGDDKWVLLDGDRIAILYAMLIKKL--LGKIQLKKKLDIGVVQTAYANGASTNYLNELL 392 (585)
T ss_pred CCeeEEECCCCCeEEEEEecCCCCccceecCHHHHHHHHHHHHHHH--hhhcCCCCCccceEEEeccCCHHHHHHHHHhc
Confidence 999999999999998 78 8999999999999998641 111 1112 599999999999999988 8
Q ss_pred C-CcEEEeecchhHHhhhhhccCceEEEEecCC--C-CCC------------------------------CccCCchHHH
Q psy5979 344 N-KELFEVPTGWKYFGNLMDAGRLSLCGEESFG--T-GSD------------------------------HIREKDGIWA 389 (499)
Q Consensus 344 g-~~v~~t~tG~k~i~~~~~~~~~~~g~Eesgg--~-~~~------------------------------~~~~~Dgi~a 389 (499)
| ++|.+||||.|++.++|++.+..++||.||| + |++ +...+|||++
T Consensus 393 g~~~v~~t~tGvk~l~~~a~e~di~iyfEaNGHGTvif~~~~~~~~~~~~~~~~~~~~a~~~L~~~~~l~n~~vGDai~~ 472 (585)
T PTZ00302 393 GRLRVYCAPTGVKNLHPKAHKYDIGIYFEANGHGTVLFNEKALAEWAKFLAKQNALNSACRQLEKFLRLFNQTIGDAISD 472 (585)
T ss_pred CCeeEEEEeCchHHHHHHHHhcCCeEEEccCCCEEEEECcHHHhhhhhhccccchhhhHHHHHHHhHhhhcCCCccHHHH
Confidence 9 9999999999999999999999999999999 5 666 5667999999
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhCC
Q psy5979 390 VLAWLSVVEHTGKPVEEILKSHWKQYGR 417 (499)
Q Consensus 390 ~l~lle~la~~~~~L~ell~~lp~~~g~ 417 (499)
+++++++|+..+++++|+++. +..+|.
T Consensus 473 ~L~v~~iL~~~~~sl~e~~~~-y~dlP~ 499 (585)
T PTZ00302 473 LLAVELALAFLGLSFQDWLNL-YTDLPS 499 (585)
T ss_pred HHHHHHHHHhhCCCHHHHHhh-cccCCc
Confidence 999999999999999999985 334454
No 39
>PF02878 PGM_PMM_I: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; InterPro: IPR005844 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain I found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 3I3W_B 1WQA_C 1KFQ_B 1KFI_A 2Z0F_A 2FKM_X 3C04_A 1K2Y_X 1P5G_X 2H4L_X ....
Probab=99.94 E-value=5.4e-27 Score=208.97 Aligned_cols=113 Identities=35% Similarity=0.425 Sum_probs=99.3
Q ss_pred CcccccchhhHHHHHhhCCCceEEEeecCCcchHHHHHHHHHHHHHCCCeEEEeCCCcccchhHHHHHHHHcCCccceEE
Q psy5979 29 DGRYFGDVAVDKIIKISGIRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQVTGGIVL 108 (499)
Q Consensus 29 ~~~~~~~~a~~~~~~~~~~~~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~g~~pTP~~~fav~~~~~~gGI~I 108 (499)
+.....+.|||+++++.+.+++|+||||+|++|++++++++++|+++|++|+++ |.+|||+++|++++++++|||||
T Consensus 21 ~~~~~~~~a~~~~~~~~~~~~~VvVg~D~R~~s~~~~~~~~~~l~~~G~~V~~~---g~~~tP~~~~~~~~~~~~ggi~i 97 (137)
T PF02878_consen 21 EFAARLAQAFASYLKEKGNGSRVVVGRDTRPSSPMLAKALAAGLRANGVDVIDI---GLVPTPALSFAIRQLNADGGIMI 97 (137)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSEEEEEE-SSTTHHHHHHHHHHHHHHTTEEEEEE---EEB-HHHHHHHHHHHTESEEEEE
T ss_pred HHHHHHHHHHHHhhcccCCCCeEEEEEcccCCHHHHHHHHHHHHhhcccccccc---cccCcHHhhhhccccccceeeEE
Confidence 444456789999999877789999999999999999999999999999999999 89999999999999999999999
Q ss_pred cCCCCCCCCCCCceeEEEcCCCCCCChhHHHHHHHHHHh
Q psy5979 109 TASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITTQ 147 (499)
Q Consensus 109 TaSHNP~~~~~~nGiK~~~~~G~~~~~~~~~~Ie~~~~~ 147 (499)
|||||| ++||||||++++|.+++++.+++|++++.+
T Consensus 98 TaShnp---~~~ngik~~~~~G~~~~~~~~~~I~~~~~~ 133 (137)
T PF02878_consen 98 TASHNP---PGYNGIKFFDANGGPISPEEERKIEQIIER 133 (137)
T ss_dssp --TTS----TTEEEEEEEETTSSB--HHHHHHHHHHHHH
T ss_pred EecCCC---CCcceEEEEeCCCCcCCHHHHHHHHHHHHh
Confidence 999999 799999999999999999999999999876
No 40
>PF02880 PGM_PMM_III: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; InterPro: IPR005846 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain III found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B 3UW2_A 2F7L_B 3I3W_B 2Z0F_A ....
Probab=99.91 E-value=2.5e-24 Score=185.28 Aligned_cols=112 Identities=28% Similarity=0.358 Sum_probs=99.7
Q ss_pred CCCcHHHHHHHHHhcCchhhhcCccceeeeccchHHHHHHHHHCCCcEEEeecchhHHhhhhhccCceEEEEecCCC-CC
Q psy5979 300 NPSDSLAVLAAHLDSIPYFKKTGVKGYARSMPTGAAVDRVAKANNKELFEVPTGWKYFGNLMDAGRLSLCGEESFGT-GS 378 (499)
Q Consensus 300 ~~d~~~~lla~~ll~~~~~~~~~~~~vv~~~~ss~~l~~ia~~~g~~v~~t~tG~k~i~~~~~~~~~~~g~Eesgg~-~~ 378 (499)
+||++++|+++++++. .++...||.|++||++++++|+++|+++++|||||+||.+.|.+.+++||||||||+ ++
T Consensus 1 ~gd~~~al~a~~~l~~----~~~~~~vv~~v~sS~~~~~~~~~~g~~~~~t~vG~~~i~~~~~~~~~~~ggE~sgg~~~~ 76 (113)
T PF02880_consen 1 NGDELLALLADYLLEE----HKPGGTVVVTVVSSRALDKIAEKHGGKVIRTKVGFKNIAEKMREENAVFGGEESGGFIFP 76 (113)
T ss_dssp HHHHHHHHHHHHHHHC----HTTTEEEEEETTS-THHHHHHHHTTSEEEEESSSHHHHHHHHHHTTESEEEETTSEEEET
T ss_pred CcHHHHHHHHHHHHHh----CCCCCEEEEeCHHHHHHHHHHHHCCCEEEEecCCcHHHHHHHhhhceeEEecccCeEEec
Confidence 3688999999999753 222236999999999999999999999999999999999999999999999999997 78
Q ss_pred CCccCCchHHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Q psy5979 379 DHIREKDGIWAVLAWLSVVEHTGKPVEEILKSHWKQY 415 (499)
Q Consensus 379 ~~~~~~Dgi~a~l~lle~la~~~~~L~ell~~lp~~~ 415 (499)
++++++|||+++++++|+|+.+++||+++++++|++|
T Consensus 77 ~~~~~~Dgi~a~~~~l~~l~~~~~~ls~ll~~l~~~Y 113 (113)
T PF02880_consen 77 DFSYDKDGIYAALLLLELLAEEGKTLSELLDELPKKY 113 (113)
T ss_dssp TTESSE-HHHHHHHHHHHHHHHTS-HHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHHHHHhCCCHHHHHHHHhccC
Confidence 9999999999999999999999999999999999976
No 41
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=99.87 E-value=7.3e-22 Score=167.47 Aligned_cols=102 Identities=28% Similarity=0.571 Sum_probs=92.7
Q ss_pred HHHHHHHHhhcC-chhHHhhhcCCCCCCCcEEEEcCCCCCChHHHHHHHHHhcCCCcceeeecccCCCCCC-CCCCCCcc
Q psy5979 185 EVYLQLMKEIFD-FPKLQSLIKGSSGRPPFKLLINAMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGG-HHPDPNLT 262 (499)
Q Consensus 185 ~~Y~~~l~~~i~-~~~i~~~~~~~~~~~~lkVvvD~~~G~~~~~~~~il~~~lG~~~~~~v~~~~d~~F~~-~~p~P~~~ 262 (499)
+.|++.|.+.++ .+.+++ +++||+|||+||+++.+++.+| ++|||+++ .+|+.+|+.|+. +.|+|.++
T Consensus 1 e~Y~~~l~~~~~~~~~~~~--------~~~kivvD~~~G~~~~~~~~ll-~~lg~~~~-~~n~~~d~~f~~~~~p~p~~~ 70 (104)
T PF02879_consen 1 EAYIESLLSFIDILEAIKK--------SGLKIVVDCMNGAGSDILPRLL-ERLGCDVI-ELNCDPDPDFPNQHAPNPEEE 70 (104)
T ss_dssp HHHHHHHHHTSCHHHHHHH--------TTCEEEEE-TTSTTHHHHHHHH-HHTTCEEE-EESSS-STTGTTTSTSSTSTT
T ss_pred ChHHHHHhhhccchhhccc--------CCCEEEEECCCCHHHHHHHHHH-HHcCCcEE-EEecccccccccccccccccc
Confidence 579999999999 777765 6899999999999999999999 99999987 599999999999 99999989
Q ss_pred cHHHHHHHHHhCCCcEEEeeCCCCCeeEEEccCc
Q psy5979 263 YAADLVQAMQAGDFDLGAAFDGDGDRNMVLGKKA 296 (499)
Q Consensus 263 ~l~~l~~~v~~~~adlgia~D~DgDRl~vvd~~G 296 (499)
++..+.+.+++.++|+|+++||||||++++|++|
T Consensus 71 ~l~~~~~~v~~~~ad~g~~~DgDaDRl~~vd~~G 104 (104)
T PF02879_consen 71 SLQRLIKIVRESGADLGIAFDGDADRLGVVDENG 104 (104)
T ss_dssp TTHHHHHHHHHSTTSEEEEE-TTSSBEEEEETTS
T ss_pred hhHHHHHHhhccCceEEEEECCcCceeEEECCCC
Confidence 9999999999999999999999999999999987
No 42
>KOG2537|consensus
Probab=99.56 E-value=4.3e-13 Score=137.08 Aligned_cols=279 Identities=20% Similarity=0.242 Sum_probs=179.1
Q ss_pred CCCceEEEeecCCcchHHHHHHHHHHHHHCCCeEEEeCCCcccchhHHHHHHHHcCCccceEEcCCCCCCCCCCCceeEE
Q psy5979 46 GIRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQVTGGIVLTASHNPGGPDNDFGIKF 125 (499)
Q Consensus 46 ~~~~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~g~~pTP~~~fav~~~~~~gGI~ITaSHNP~~~~~~nGiK~ 125 (499)
....+|++|||+|.+|+.+.+++..++.+....+.++ |++.||.+.|.++..+-. +- | | +
T Consensus 122 t~~~~v~~G~DtR~s~~~L~~~~~~~~~~l~a~~~d~---GvvtTPqLHy~v~~~n~~-~~-------~-------~-~- 181 (539)
T KOG2537|consen 122 TVSAHVVVGRDTRPSSPRLLNAVRDGVGALFAQVDDY---GVVTTPQLHYMVRASNTK-GA-------Y-------G-K- 181 (539)
T ss_pred cccceEEEecCCCCccHHHHHHHHHHHHhhheEecce---EEEcchhhhhhhhhcccc-cc-------c-------c-c-
Confidence 3457899999999999999999999998888888887 999999999999875431 11 1 1 1
Q ss_pred EcCCCCCCChhHHHHHHHHHHhhhccCcCCCcccccccccCccccccCCcceEEEeCcHHHHHHHHHhhcCchhHHhhhc
Q psy5979 126 NTSNGGPAPDAVTENIYKITTQIKTYSIVPDLKVDITSIGSSSYEVDGAQFQVDVIDSVEVYLQLMKEIFDFPKLQSLIK 205 (499)
Q Consensus 126 ~~~~G~~~~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~d~~~~Y~~~l~~~i~~~~i~~~~~ 205 (499)
|.+-.++--.++.+.+.. .. .+++
T Consensus 182 ----~~~t~~~Y~~~ls~af~~-----------------------------------------l~--------~~~~--- 205 (539)
T KOG2537|consen 182 ----GKPTEEGYYSKLSKAFNE-----------------------------------------LR--------NITQ--- 205 (539)
T ss_pred ----CCCCcccHHHHHHHHHHH-----------------------------------------hh--------hhcc---
Confidence 112111111111111110 00 0000
Q ss_pred CCCCCCCcEEEEcCCCCCChHHHHHHHHHhcC--CCcceeeecccC---------CCCCC---CCCCCCcccHHHHHHHH
Q psy5979 206 GSSGRPPFKLLINAMHGVTGPYVKKIFLEELG--AQPDNAVNTTPL---------PDFGG---HHPDPNLTYAADLVQAM 271 (499)
Q Consensus 206 ~~~~~~~lkVvvD~~~G~~~~~~~~il~~~lG--~~~~~~v~~~~d---------~~F~~---~~p~P~~~~l~~l~~~v 271 (499)
.+ .....|+.|||.||.|+.-+..+. .-.. .++ .++|...| .+|-. .+|.-.++
T Consensus 206 ~~-~~~~~k~~VD~ANGvG~~klk~l~-~i~~~~l~v-EivNd~~dpelLN~~CGADFVkt~QkpP~~~~~--------- 273 (539)
T KOG2537|consen 206 ES-GDEVSKLIVDCANGVGAPKLKELL-GIDSGLLNV-EVVNDGIDPGLLNNGCGADFVKTKQKPPKGLSP--------- 273 (539)
T ss_pred cc-CCccceEEEECccccchHHHHHHh-ccCCCcCce-EEEcCCCChhhhccccccchhhccccCCCCCCC---------
Confidence 00 013469999999999988777655 3211 222 24554443 22322 11111110
Q ss_pred HhCCCcEEEeeCCCCCeeEEE--ccCc--eEeCCCcHHHHHHHHHhcCchhhhc--C-ccceeeeccc-hHHHHHHHHHC
Q psy5979 272 QAGDFDLGAAFDGDGDRNMVL--GKKA--FFVNPSDSLAVLAAHLDSIPYFKKT--G-VKGYARSMPT-GAAVDRVAKAN 343 (499)
Q Consensus 272 ~~~~adlgia~D~DgDRl~vv--d~~G--~~l~~d~~~~lla~~ll~~~~~~~~--~-~~~vv~~~~s-s~~l~~ia~~~ 343 (499)
..---....||||+||+..+ ++++ +++++|.+..+++.|+-.. ++.- + ..+||.|..+ +...+-+-...
T Consensus 274 -~~~~~~caSfDGDADRlvyf~~~~~~~f~llDGDkistlla~~l~~l--l~~~~~~l~~GvVqtaYaNgast~yl~~~l 350 (539)
T KOG2537|consen 274 -IKANTRCASFDGDADRLVYFYIDDDSEFHLLDGDKIATLIAGYLREL--LKQIELSLRLGVVQTAYANGASTDYLKETL 350 (539)
T ss_pred -CCCCCceeeeecccceeEEEEecCCceeEeecchHHHHHHHHHHHHH--HHHhhccceeeeEEEEeecCccHhhhhhhc
Confidence 11112578999999998875 5556 6899999999999887432 1111 1 1357777643 44566666669
Q ss_pred CCcEEEeecchhHHhhhhhccCceEEEEecCCC---CCCCcc-------------------------------CCchHHH
Q psy5979 344 NKELFEVPTGWKYFGNLMDAGRLSLCGEESFGT---GSDHIR-------------------------------EKDGIWA 389 (499)
Q Consensus 344 g~~v~~t~tG~k~i~~~~~~~~~~~g~Eesgg~---~~~~~~-------------------------------~~Dgi~a 389 (499)
+++++.|+||-|+++.++.+.+....+|.+||. |+.... ..|++..
T Consensus 351 ~~~vv~v~tGvKhlh~~A~efDiGiyFEaNGHGti~FS~~~~~~i~~~~~~~~~~~~~a~~~L~~~~~Linq~vGDAisd 430 (539)
T KOG2537|consen 351 KFPVVCVPTGVKHLHHAAAEFDIGIYFEANGHGTILFSEAFLATIKDLAETKEPGESKALKTLKLLSDLINQTVGDAISD 430 (539)
T ss_pred CCceEEeccccchHHHHHHhhcceeEEeccCccceeehHHHHHhhhhhhhCCCccchHHHHHHHHHHhhhcccchhhhcc
Confidence 999999999999999999988888899999983 443210 2677877
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhC
Q psy5979 390 VLAWLSVVEHTGKPVEEILKSHWKQYG 416 (499)
Q Consensus 390 ~l~lle~la~~~~~L~ell~~lp~~~g 416 (499)
++++.-+|+..+.+..++-+ ++...|
T Consensus 431 ~llv~~il~~~~~s~~~w~e-~y~dlP 456 (539)
T KOG2537|consen 431 MLAVEAILAHKGWSVQDWDE-LYRDLP 456 (539)
T ss_pred hHHHHHHHHhcCCCHHHHHH-HhcCCc
Confidence 77777778888888888877 555443
No 43
>PLN02895 phosphoacetylglucosamine mutase
Probab=98.55 E-value=1.3e-07 Score=101.75 Aligned_cols=68 Identities=25% Similarity=0.302 Sum_probs=55.2
Q ss_pred HHHHHHHHHHCCCeEEEeCCCcccchhHHHHHHHHcCCccceEEcCCCCCCCCCCCceeEEEcCCCCCCChhHHHHHHHH
Q psy5979 65 VDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQVTGGIVLTASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKI 144 (499)
Q Consensus 65 a~a~a~gL~s~Gi~V~~~~~~g~~pTP~~~fav~~~~~~gGI~ITaSHNP~~~~~~nGiK~~~~~G~~~~~~~~~~Ie~~ 144 (499)
-+..+..|.+.|+.|..+ ..+.|| ++++.+|||||||||| ++|||+|+++++|.++.+++++--.++
T Consensus 31 FR~~a~~l~~~~~r~~~~--~~~r~~--------~~~~~~gVmITaSHnp---~~~nG~K~~~~~G~~~~~~~e~~a~~l 97 (562)
T PLN02895 31 FRTDASLLESTVFRVGIL--AALRSL--------KTGAATGLMITASHNP---VSDNGVKIVDPSGGMLPQAWEPFADAL 97 (562)
T ss_pred hHHHHHHHHhcCeEEEEe--CCCCcc--------ccCCCcEEEEeCCCCC---cccCcEEEECCCCCcCCHHHHHHHHHH
Confidence 355677899999999998 355665 4488999999999999 899999999999999998765544444
Q ss_pred H
Q psy5979 145 T 145 (499)
Q Consensus 145 ~ 145 (499)
.
T Consensus 98 a 98 (562)
T PLN02895 98 A 98 (562)
T ss_pred h
Confidence 3
No 44
>PTZ00302 N-acetylglucosamine-phosphate mutase; Provisional
Probab=98.42 E-value=2.2e-07 Score=100.71 Aligned_cols=43 Identities=28% Similarity=0.430 Sum_probs=40.0
Q ss_pred CccceEEcCCCCCCCCCCCceeEEEcCCCCCCChhHHHHHHHHHHh
Q psy5979 102 VTGGIVLTASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITTQ 147 (499)
Q Consensus 102 ~~gGI~ITaSHNP~~~~~~nGiK~~~~~G~~~~~~~~~~Ie~~~~~ 147 (499)
+.+|||||||||| ++|||+|+++++|+++.+++++.|++..+.
T Consensus 75 ~~~GImiTASHNp---~~~NG~K~~~~~G~~l~~~~~~~i~~~~n~ 117 (585)
T PTZ00302 75 KSVGVMITASHNP---IQDNGVKIIDPDGGMLEESWEKICTDFANA 117 (585)
T ss_pred cceeEEEeCCCCC---cccCCEEEECCCCCcCCCcHHHHHHHHHhc
Confidence 7899999999999 799999999999999999999999887653
No 45
>cd03086 PGM3 PGM3 (phosphoglucomutase 3), also known as PAGM (phosphoacetylglucosamine mutase) and AGM1 (N-acetylglucosamine-phosphate mutase), is an essential enzyme found in eukaryotes that reversibly catalyzes the conversion of GlcNAc-6-phosphate into GlcNAc-1-phosphate as part of the UDP-N-acetylglucosamine (UDP-GlcNAc) biosynthetic pathway. UDP-GlcNAc is an essential metabolite that serves as the biosynthetic precursor of many glycoproteins and mucopolysaccharides. AGM1 is a member of the alpha-D-phosphohexomutase superfamily, which catalyzes the intramolecular phosphoryl transfer of sugar substrates. The alpha-D-phosphohexomutases have four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=98.19 E-value=2.3e-06 Score=92.22 Aligned_cols=41 Identities=29% Similarity=0.441 Sum_probs=36.3
Q ss_pred ccceEEcCCCCCCCCCCCceeEEEcCCCCCCChhHHHHHHHHHH
Q psy5979 103 TGGIVLTASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITT 146 (499)
Q Consensus 103 ~gGI~ITaSHNP~~~~~~nGiK~~~~~G~~~~~~~~~~Ie~~~~ 146 (499)
.+|||||||||| ++|||||+..++|.+++++++++++++.+
T Consensus 36 ~~gimITaSHNP---~~~NGiK~~~~~g~~~~~~~~~~~~~~~~ 76 (513)
T cd03086 36 TIGVMITASHNP---VEDNGVKIVDPDGEMLEESWEPYATQLAN 76 (513)
T ss_pred ceEEEECCCcCC---cccCeEEEEcCCCCCCCHHHHHHHHHHhh
Confidence 689999999999 79999999999999999887777766543
No 46
>KOG2537|consensus
Probab=96.88 E-value=0.00051 Score=71.45 Aligned_cols=37 Identities=35% Similarity=0.451 Sum_probs=32.3
Q ss_pred cCCccceEEcCCCCCCCCCCCceeEEEcCCCCCCChhHHH
Q psy5979 100 HQVTGGIVLTASHNPGGPDNDFGIKFNTSNGGPAPDAVTE 139 (499)
Q Consensus 100 ~~~~gGI~ITaSHNP~~~~~~nGiK~~~~~G~~~~~~~~~ 139 (499)
.+..-|+|||||||| .++||+|+.++.|..++..++.
T Consensus 57 ~gs~IGvMiTASHNp---~~dNGvKivd~~g~ml~~~WE~ 93 (539)
T KOG2537|consen 57 GGSTIGVMITASHNP---VEDNGVKIVDPSGEMLAASWEE 93 (539)
T ss_pred cCCeeEEEEEeccCc---hhhcCccccCCccchhhhhhhh
Confidence 455689999999999 7999999999999998877654
No 47
>PF00408 PGM_PMM_IV: Phosphoglucomutase/phosphomannomutase, C-terminal domain; InterPro: IPR005843 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents the C-terminal domain alpha-D-phosphohexomutase enzymes.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 1KFQ_B 1KFI_A 3PDK_B 2F7L_A 1TUO_A 2FKM_X 3C04_A 1K2Y_X 1P5G_X 2H4L_X ....
Probab=96.80 E-value=0.00081 Score=52.89 Aligned_cols=31 Identities=10% Similarity=0.026 Sum_probs=24.5
Q ss_pred cCCCeEEEEeeCCeEEEEeecCCccccccee
Q psy5979 466 QEKQGVRSAISQTGLVHIQIIRNRQFRRHVV 496 (499)
Q Consensus 466 ~~iDGik~~~~d~~Wvlir~s~~~~~~~~~~ 496 (499)
+..||+|+.++||.|++||||++.|.=|.++
T Consensus 23 ~~~~~~~~~~~dG~~l~vR~SgTEP~iRv~~ 53 (73)
T PF00408_consen 23 STIDGIKILFEDGWRLLVRPSGTEPKIRVYV 53 (73)
T ss_dssp EHHHCEEEEETTEEEEEEEEESSSSEEEEEE
T ss_pred cccceEEEECCCceEEEEECCCCCceEEEEE
Confidence 4679999999985445599999999866554
No 48
>PF02502 LacAB_rpiB: Ribose/Galactose Isomerase; InterPro: IPR003500 This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB). Galactose-6-phosphate isomerase (5.3.1.26 from EC) is a heteromultimeric protein consisting of subunits LacA and LacB, and catalyses the conversion of D-galactose 6-phosphate to D-tagatose and 6-phosphate in the tagatose 6-phosphate pathway of lactose catabolism []. Galactose-6-phosphate isomerase is induced by galactose or lactose. This entry represents the LacB subunit. Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology [].; GO: 0005975 carbohydrate metabolic process; PDB: 3HEE_A 3HE8_A 3PH3_B 3PH4_B 3ONO_A 4EM8_B 3S5P_B 1O1X_A 2BES_D 2VVP_D ....
Probab=81.50 E-value=6.5 Score=34.97 Aligned_cols=54 Identities=19% Similarity=0.284 Sum_probs=37.5
Q ss_pred eEEEeecCCcchHHHHHHHHHHHHHCCCeEEEeCCCcccc-----hhHHHHHH----HHcCCccceEE
Q psy5979 50 VLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILS-----TPAVSALI----RKHQVTGGIVL 108 (499)
Q Consensus 50 ~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~g~~p-----TP~~~fav----~~~~~~gGI~I 108 (499)
+|+||.|. ++-.+++.+..-|.+.|++|.|+ |.-. -|.+.+.+ ..-.++-||.|
T Consensus 1 KI~igsDh--~g~~lK~~i~~~L~~~g~eV~D~---G~~~~~~~dy~~~a~~va~~V~~~~~d~GIli 63 (140)
T PF02502_consen 1 KIAIGSDH--AGFELKEAIKEYLEEKGYEVIDF---GTYSEDSVDYPDFAEKVAEAVASGEADRGILI 63 (140)
T ss_dssp EEEEEE-G--GGHHHHHHHHHHHHHTTEEEEEE---SESSTST--HHHHHHHHHHHHHTTSSSEEEEE
T ss_pred CEEEEeCH--HHHHHHHHHHHHHHHCCCEEEEe---CCCCCCCCCHHHHHHHHHHHHHcccCCeEEEE
Confidence 57888884 56899999999999999999999 5443 56555544 23344445544
No 49
>PRK08621 galactose-6-phosphate isomerase subunit LacA; Reviewed
Probab=80.44 E-value=8.9 Score=34.18 Aligned_cols=47 Identities=13% Similarity=0.121 Sum_probs=35.1
Q ss_pred eEEEeecCCcchHHHHHHHHHHHHHCCCeEEEeCCCcccchhHHHHHHH
Q psy5979 50 VLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIR 98 (499)
Q Consensus 50 ~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~g~~pTP~~~fav~ 98 (499)
+|+||.|. .+-.+++.+.+-|.+.|++|.|++....+.-|-+.+.+-
T Consensus 2 kI~igsDh--aG~~lK~~l~~~L~~~G~eV~D~G~~~~~dYpd~a~~va 48 (142)
T PRK08621 2 AIIIGADK--AGFELKEVVKDYLEDNKYEVVDVTEEGAEDFVDSTLAVA 48 (142)
T ss_pred EEEEEeCc--chHHHHHHHHHHHHHCCCEEEECCCCCCCCcHHHHHHHH
Confidence 57888884 678999999999999999999994211245566665543
No 50
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=80.19 E-value=4.7 Score=41.88 Aligned_cols=69 Identities=12% Similarity=-0.016 Sum_probs=50.9
Q ss_pred hhhHHHHHhhCCCceEEEeec-CCcchHHHHHHHHHHHHHCCCeEEEeCCCcccchhHHHHHHHHcCCccceEEc
Q psy5979 36 VAVDKIIKISGIRSVLVVGGD-GRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQVTGGIVLT 109 (499)
Q Consensus 36 ~a~~~~~~~~~~~~~VvVg~D-~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~g~~pTP~~~fav~~~~~~gGI~IT 109 (499)
.+|-.|...+.++ +|+|-+| ...+.+.++++++++|++.|++|... ..... -.+.-+.......|++|-
T Consensus 235 ~~Y~~W~~~~~~~-~V~l~Y~smyg~T~~ma~aiaegl~~~gv~v~~~---~~~~~-~~~eI~~~i~~a~~~vvG 304 (388)
T COG0426 235 EAYRDWAEGQPKG-KVDLIYDSMYGNTEKMAQAIAEGLMKEGVDVEVI---NLEDA-DPSEIVEEILDAKGLVVG 304 (388)
T ss_pred HHHHHHHccCCcc-eEEEEEecccCCHHHHHHHHHHHhhhcCCceEEE---EcccC-CHHHHHHHHhhcceEEEe
Confidence 6888998877777 8888888 56788999999999999999999887 22222 334444444445678883
No 51
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=79.37 E-value=8.9 Score=34.22 Aligned_cols=32 Identities=22% Similarity=0.325 Sum_probs=27.8
Q ss_pred eEEEeecCCcchHHHHHHHHHHHHHCCCeEEEeC
Q psy5979 50 VLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVG 83 (499)
Q Consensus 50 ~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~ 83 (499)
+|+||.|. .+-.+++.+..-|.+.|++|.|++
T Consensus 1 kI~igsDh--aG~~lK~~l~~~L~~~g~eV~D~G 32 (143)
T TIGR01120 1 KIAIGSDH--AGFILKEEIKAFLVERGVKVIDKG 32 (143)
T ss_pred CEEEEeCc--chHHHHHHHHHHHHHCCCEEEEeC
Confidence 47888884 678999999999999999999983
No 52
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=79.06 E-value=8.9 Score=34.13 Aligned_cols=43 Identities=14% Similarity=0.173 Sum_probs=33.4
Q ss_pred eEEEeecCCcchHHHHHHHHHHHHHCCCeEEEeCCCcc--cchhHHHHHH
Q psy5979 50 VLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGI--LSTPAVSALI 97 (499)
Q Consensus 50 ~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~g~--~pTP~~~fav 97 (499)
+|+||.|. .+-.+++.+..-|.+.|++|.|+ |. +.-|-+...+
T Consensus 2 kI~igsDh--aG~~lK~~l~~~L~~~g~eV~D~---G~~~~dypd~a~~v 46 (141)
T PRK12613 2 AIILGADA--HGNALKELIKSFLQEEGYDIIDV---TDINSDFIDNTLAV 46 (141)
T ss_pred EEEEEeCc--chHHHHHHHHHHHHHCCCEEEEc---CCCCCChHHHHHHH
Confidence 47888884 67899999999999999999998 54 3445554443
No 53
>TIGR01118 lacA galactose-6-phosphate isomerase, LacA subunit. This family contains members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=78.70 E-value=9.1 Score=34.07 Aligned_cols=46 Identities=20% Similarity=0.210 Sum_probs=34.0
Q ss_pred eEEEeecCCcchHHHHHHHHHHHHHCCCeEEEeCCCcccchhHHHHHH
Q psy5979 50 VLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALI 97 (499)
Q Consensus 50 ~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~g~~pTP~~~fav 97 (499)
+|+||.|. .+-.+++.+..-|.+.|++|.|++....+--|-+.+.+
T Consensus 2 kI~IgsDh--~G~~lK~~i~~~L~~~G~eV~D~G~~~~~dYpd~a~~v 47 (141)
T TIGR01118 2 AIIIGSDL--AGKRLKDVIKNFLVDNGFEVIDVTEGDGQDFVDVTLAV 47 (141)
T ss_pred EEEEEeCc--chHHHHHHHHHHHHHCCCEEEEcCCCCCCCcHHHHHHH
Confidence 57888884 57899999999999999999998321124456655444
No 54
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=78.08 E-value=8.9 Score=34.45 Aligned_cols=32 Identities=22% Similarity=0.269 Sum_probs=28.3
Q ss_pred eEEEeecCCcchHHHHHHHHHHHHHCCCeEEEeC
Q psy5979 50 VLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVG 83 (499)
Q Consensus 50 ~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~ 83 (499)
+|+||.|. .+-.+++.+..-|.+.|++|.|++
T Consensus 2 kI~igsDh--aG~~lK~~l~~~L~~~g~eV~D~G 33 (148)
T PRK05571 2 KIAIGSDH--AGFELKEEIIEHLEELGHEVIDLG 33 (148)
T ss_pred EEEEEeCC--chHHHHHHHHHHHHHCCCEEEEcC
Confidence 58888885 578999999999999999999984
No 55
>PF13155 Toprim_2: Toprim-like
Probab=77.06 E-value=9.9 Score=30.84 Aligned_cols=72 Identities=21% Similarity=0.178 Sum_probs=51.4
Q ss_pred chhhHHHHHHHhh-cCCCCC-CeEEEeCCcccccchhhHHHHHhhCCCceEEEeecCCcchHHHHHHHHHHHHHCC
Q psy5979 3 YTENFIQSILTAL-GDKLKG-SVLVVGGDGRYFGDVAVDKIIKISGIRSVLVVGGDGRYFGDVAVDKIIKISAANG 76 (499)
Q Consensus 3 ~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~VvVg~D~R~~s~~~a~a~a~gL~s~G 76 (499)
.+|.++++|..+. .....+ ..+++.+.+... .+....++.+.+. +.|+++.|+-.+|+.+++.+.+-|...+
T Consensus 2 v~Eg~iDaLS~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~l~~~~~-~~i~l~~DnD~aG~~~~~~~~~~l~~~~ 75 (96)
T PF13155_consen 2 VFEGPIDALSYYQLGKENIKDNSLSLAGGGTLS-EKQQIKFLKENPY-KKIVLAFDNDEAGRKAAEKLQKELKEEG 75 (96)
T ss_pred EEeCHHHHHHHHHhCchhcCCceEEEECCchHH-HHHHHHHHHhCCC-CcEEEEeCCCHHHHHHHHHHHHHHHhhC
Confidence 4788999998443 333322 226776666552 3455666654444 7899999999999999999999999887
No 56
>cd05805 MPG1_transferase GTP-mannose-1-phosphate guanyltransferase (MPG1 transferase), also known as GDP-mannose pyrophosphorylase, is a bifunctional enzyme with both phosphomannose isomerase (PMI) activity and GDP-mannose phosphorylase (GMP) activity. The protein contains an N-terminal NTP transferase domain, an L-beta-H domain, and a C-terminal PGM-like domain that belongs to the alpha-D-phosphohexomutase superfamily. This subfamily is limited to bacteria and archaea. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this group appear to lack conserved residues necessary for metal binding and catalytic activity. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional
Probab=76.98 E-value=4 Score=43.44 Aligned_cols=65 Identities=22% Similarity=0.073 Sum_probs=44.7
Q ss_pred CCchhhHHHHHHHhhcCCCC-CCeEEEeCCccccc---chhhHHHHHhhCCCceEEEeecCCcchHHHHHHHH
Q psy5979 1 EHYTENFIQSILTALGDKLK-GSVLVVGGDGRYFG---DVAVDKIIKISGIRSVLVVGGDGRYFGDVAVDKII 69 (499)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~a~~~~~~~~~~~~~VvVg~D~R~~s~~~a~a~a 69 (499)
+.+|.+|+..|+.||.+-++ +++|+||+|+|..| +.|+++.+.. .+-.|+.-. ....+++..++.
T Consensus 13 ~~lt~~~~~~lg~a~~~~l~~~~~VvVG~D~R~ss~~~~~a~~~gL~s--~G~~V~~~g--~~pTP~~~~av~ 81 (441)
T cd05805 13 VDITPEFATRLGAAYGSTLPPGSTVTVSRDASRASRMLKRALISGLLS--TGVNVRDLG--ALPLPVARYAIR 81 (441)
T ss_pred CCCCHHHHHHHHHHHhhcCCCCCEEEEEcCCChhHHHHHHHHHHHHHh--CCCeEEecC--CcCchHHHHHHH
Confidence 35899999999999987664 67899999999955 3444444442 344454432 255577777664
No 57
>PRK14321 glmM phosphoglucosamine mutase; Provisional
Probab=75.74 E-value=2.9 Score=44.71 Aligned_cols=33 Identities=33% Similarity=0.383 Sum_probs=29.7
Q ss_pred CchhhHHHHHHHhhcCCCCCCeEEEeCCccccc
Q psy5979 2 HYTENFIQSILTALGDKLKGSVLVVGGDGRYFG 34 (499)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (499)
.+|..|+..|+.||.+-+++.+|++|+|+|+.+
T Consensus 17 ~lt~e~~~~lg~a~~~~l~~~~VvVg~D~R~~s 49 (449)
T PRK14321 17 KLTPELALKVGLALGTYLGGGKVVVGKDTRTSS 49 (449)
T ss_pred CCCHHHHHHHHHHHHhhccCCcEEEEeCCCCCh
Confidence 589999999999999888777899999999966
No 58
>cd03087 PGM_like1 This archaeal PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=74.30 E-value=3.5 Score=43.89 Aligned_cols=64 Identities=23% Similarity=0.150 Sum_probs=44.0
Q ss_pred CchhhHHHHHHHhhcCCCCCCeEEEeCCccccc---chhhHHHHHhhCCCceEEEeecCCcchHHHHHHHH
Q psy5979 2 HYTENFIQSILTALGDKLKGSVLVVGGDGRYFG---DVAVDKIIKISGIRSVLVVGGDGRYFGDVAVDKII 69 (499)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~a~~~~~~~~~~~~~VvVg~D~R~~s~~~a~a~a 69 (499)
.+|..|+..|+.||.+-++++.|++|+|+|+.+ +.|+.+.+... +-.|+.- .-...|++.-++.
T Consensus 14 ~lt~~~~~~l~~a~~~~l~~~~VvVg~D~R~~s~~l~~a~~~gL~~~--G~~V~~~--g~~~tP~~~~~v~ 80 (439)
T cd03087 14 ELTPELALKVGKALGTYLGGGTVVVGRDTRTSGPMLKNAVIAGLLSA--GCDVIDI--GIVPTPALQYAVR 80 (439)
T ss_pred CcCHHHHHHHHHHHHhhccCCeEEEEeCCCCCHHHHHHHHHHHHHHC--CCeEEEc--CccChHHHHHHHH
Confidence 579999999999999888888999999999955 34444444432 3334433 2344566666554
No 59
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=74.06 E-value=12 Score=33.41 Aligned_cols=45 Identities=20% Similarity=0.296 Sum_probs=31.5
Q ss_pred EEEeecCCcchHHHHHHHHHHHHHCCCeEEEeCC--CcccchhHHHHHH
Q psy5979 51 LVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQ--NGILSTPAVSALI 97 (499)
Q Consensus 51 VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~--~g~~pTP~~~fav 97 (499)
|+||.| +.+-.+|+.+..-|.+.|++|.|++. ...+.-|-+.+.+
T Consensus 1 I~igsD--haG~~lK~~l~~~L~~~g~eV~D~G~~~~~~~dYpd~a~~v 47 (144)
T TIGR00689 1 IAIGSD--HAGLELKSEIIEHLKQKGHEVIDCGTLYDERVDYPDYAKLV 47 (144)
T ss_pred CEEeeC--cchHHHHHHHHHHHHHCCCEEEEcCCCCCCCCChHHHHHHH
Confidence 456776 45788999999999999999999831 0123445554444
No 60
>cd05803 PGM_like4 This PGM-like (phosphoglucomutase-like) domain is located C-terminal to a mannose-1-phosphate guanyltransferase domain in a protein of unknown function that is found in both prokaryotes and eukaryotes. This domain belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=73.87 E-value=4.3 Score=43.28 Aligned_cols=64 Identities=20% Similarity=0.117 Sum_probs=43.9
Q ss_pred CchhhHHHHHHHhhcCCC----CCCeEEEeCCccccc---chhhHHHHHhhCCCceEEEeecCCcchHHHHHHHH
Q psy5979 2 HYTENFIQSILTALGDKL----KGSVLVVGGDGRYFG---DVAVDKIIKISGIRSVLVVGGDGRYFGDVAVDKII 69 (499)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~---~~a~~~~~~~~~~~~~VvVg~D~R~~s~~~a~a~a 69 (499)
.+|+.|+..|+.||.+-+ ++.+|++|+|+|+.+ +.|+.+.+.. .+-.|+.. . ....+++..++.
T Consensus 14 ~lt~~~v~~l~~a~~~~l~~~~~~~~Vvvg~D~R~~s~~l~~a~~~gL~~--~G~~V~~~-g-~~pTP~~~~a~~ 84 (445)
T cd05803 14 GLTPEVITRYVAAFATWQPERTKGGKIVVGRDGRPSGPMLEKIVIGALLA--CGCDVIDL-G-IAPTPTVQVLVR 84 (445)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCeEEEEeCCCCCHHHHHHHHHHHHHH--CCCeEEEe-C-CCCchHHHHHHH
Confidence 489999999999986555 378899999999966 3455555542 34445443 2 555677776655
No 61
>TIGR01119 lacB galactose-6-phosphate isomerase, LacB subunit. This family contains four members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=73.75 E-value=15 Score=33.81 Aligned_cols=32 Identities=19% Similarity=0.215 Sum_probs=28.3
Q ss_pred eEEEeecCCcchHHHHHHHHHHHHHCCCeEEEeC
Q psy5979 50 VLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVG 83 (499)
Q Consensus 50 ~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~ 83 (499)
+|+||.|. .+-.+++.+..-|.+.|++|.|++
T Consensus 2 kI~igsDh--aG~~lK~~l~~~L~~~G~eV~D~G 33 (171)
T TIGR01119 2 KIAIGCDH--IVTDVKMEVSEFLKSKGYEVLDVG 33 (171)
T ss_pred EEEEEeCC--chHHHHHHHHHHHHHCCCEEEEeC
Confidence 58888884 678999999999999999999983
No 62
>PTZ00215 ribose 5-phosphate isomerase; Provisional
Probab=72.90 E-value=16 Score=32.99 Aligned_cols=46 Identities=15% Similarity=0.148 Sum_probs=33.9
Q ss_pred eEEEeecCCcchHHHHHHHHHHHHH--CCCeEEEeCCC--cccchhHHHHHH
Q psy5979 50 VLVVGGDGRYFGDVAVDKIIKISAA--NGVAKLIVGQN--GILSTPAVSALI 97 (499)
Q Consensus 50 ~VvVg~D~R~~s~~~a~a~a~gL~s--~Gi~V~~~~~~--g~~pTP~~~fav 97 (499)
+|+||.|. .+-.+++.+..-|.+ .|++|.|++.. ..+.-|-+.+.+
T Consensus 4 kI~igsDh--aG~~lK~~l~~~L~~~~~g~eV~D~G~~~~~~~dYp~~a~~v 53 (151)
T PTZ00215 4 KVAIGSDH--AGFDLKNEIIDYIKNKGKEYKIEDMGTYTAESVDYPDFAEKV 53 (151)
T ss_pred EEEEEeCC--chHHHHHHHHHHHHhccCCCEEEEcCCCCCCCCCHHHHHHHH
Confidence 68999985 568899999999999 99999999411 124455554443
No 63
>PRK12615 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=72.75 E-value=16 Score=33.64 Aligned_cols=46 Identities=11% Similarity=0.100 Sum_probs=33.7
Q ss_pred eEEEeecCCcchHHHHHHHHHHHHHCCCeEEEeCCC--cccchhHHHHHH
Q psy5979 50 VLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQN--GILSTPAVSALI 97 (499)
Q Consensus 50 ~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~--g~~pTP~~~fav 97 (499)
+|+||.|. .+-.+++.+..-|.+.|++|.|++.. ..+.-|-+.+.+
T Consensus 2 kI~igsDh--aG~~lK~~l~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~v 49 (171)
T PRK12615 2 KIAIGCDH--IVTNEKMAVSDFLKSKGYDVIDCGTYDHTRTHYPIFGKKV 49 (171)
T ss_pred EEEEEeCc--hhHHHHHHHHHHHHHCCCEEEEcCCCCCCCCChHHHHHHH
Confidence 58888884 57899999999999999999998310 123455555544
No 64
>PRK08622 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=72.38 E-value=17 Score=33.42 Aligned_cols=46 Identities=13% Similarity=0.103 Sum_probs=33.9
Q ss_pred eEEEeecCCcchHHHHHHHHHHHHHCCCeEEEeCCC--cccchhHHHHHH
Q psy5979 50 VLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQN--GILSTPAVSALI 97 (499)
Q Consensus 50 ~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~--g~~pTP~~~fav 97 (499)
+|+||.|. .+-.+++.+..-|.+.|++|.|++.. ..+.-|-+.+.+
T Consensus 2 kI~IgsDh--aG~~lK~~l~~~L~~~G~eV~D~G~~~~e~~dYpd~a~~v 49 (171)
T PRK08622 2 KIAIGCDH--IVTDEKMAVSDYLKSKGHEVIDVGTYDFTRTHYPIFGKKV 49 (171)
T ss_pred EEEEEeCc--chHHHHHHHHHHHHHCCCEEEEcCCCCCCCCChHHHHHHH
Confidence 58888885 56789999999999999999998310 124456555544
No 65
>PRK15414 phosphomannomutase CpsG; Provisional
Probab=72.07 E-value=3.6 Score=44.08 Aligned_cols=42 Identities=31% Similarity=0.415 Sum_probs=32.8
Q ss_pred CchhhHHHHHHHhhcCCCCCCeEEEeCCccccc---chhhHHHHH
Q psy5979 2 HYTENFIQSILTALGDKLKGSVLVVGGDGRYFG---DVAVDKIIK 43 (499)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~a~~~~~~ 43 (499)
.+|..|+..++.||.+-+++.+|++|+|+|+.+ +.|+++.+.
T Consensus 19 ~lt~~~~~~~~~a~a~~l~~~~VvVg~D~R~ss~~l~~a~a~gL~ 63 (456)
T PRK15414 19 ELNEDIAWRIGRAYGEFLKPKTIVLGGDVRLTSETLKLALAKGLQ 63 (456)
T ss_pred CcCHHHHHHHHHHHHHHhcCCeEEEEECCCCChHHHHHHHHHHHH
Confidence 489999999999998777656899999999966 344444444
No 66
>COG0033 Pgm Phosphoglucomutase [Carbohydrate transport and metabolism]
Probab=69.88 E-value=2.5 Score=44.16 Aligned_cols=54 Identities=22% Similarity=0.231 Sum_probs=36.2
Q ss_pred CCceEEEeecCCcchHHHHHHHHHHHHHCCCeE-EEeC-CCcccchhHHHHHHHHc
Q psy5979 47 IRSVLVVGGDGRYFGDVAVDKIIKISAANGVAK-LIVG-QNGILSTPAVSALIRKH 100 (499)
Q Consensus 47 ~~~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V-~~~~-~~g~~pTP~~~fav~~~ 100 (499)
-.+++.++-|.-.....|.++++..+...|.-- +.++ |.....-|++.-++.-+
T Consensus 23 ~R~~~~~~~fne~~i~a~~Qai~d~~~~~~~~~~L~vG~D~~~~se~a~~~~lev~ 78 (524)
T COG0033 23 HRGSALVFTFNENHILAFIQAIADYRAEGGIGGPLVVGGDTHALSEPAIQSALEVL 78 (524)
T ss_pred ccCccccCccCHHHHHHHHHHHHHHHhccCCCCceEECCCcccccHHHHHHHHHHH
Confidence 356777888888888888888888887665322 2222 33467778887776654
No 67
>TIGR02133 RPI_actino ribose 5-phosphate isomerase. This family is a member of the RpiB/LacA/LacB subfamily (TIGR00689) but lies outside the RpiB equivalog (TIGR01120) which is also a member of that subfamily. Ribose 5-phosphate isomerase is an essential enzyme of the pentose phosphate pathway; a pathway that appears to be present in the actinobacteria. The only candidates for ribose 5-phosphate isomerase in the Actinobacteria are members of this family.
Probab=67.93 E-value=22 Score=31.92 Aligned_cols=46 Identities=20% Similarity=0.022 Sum_probs=33.3
Q ss_pred eEEEeecCCcchHHHHHHHHHHHHHCCCeEEEeCCCc---ccchhHHHHHH
Q psy5979 50 VLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNG---ILSTPAVSALI 97 (499)
Q Consensus 50 ~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~g---~~pTP~~~fav 97 (499)
+|+||.|. .+-.+++.+..-|.+.|++|.|++... ...-|-+...+
T Consensus 2 kI~igsDh--aG~~lK~~l~~~L~~~g~eV~D~G~~~~~~~~dYpd~a~~v 50 (148)
T TIGR02133 2 RVVLGHDH--AGFEYKEALWLDLAAHEPEVCDVGVYDADDDDDYPCFCIAA 50 (148)
T ss_pred EEEEEeCc--hhHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCchHHHHHH
Confidence 47788874 578999999999999999999983100 23356655544
No 68
>cd03088 ManB ManB is a bacterial phosphomannomutase (PMM) that catalyzes the conversion of mannose 6-phosphate to mannose-1-phosphate in the second of three steps in the GDP-mannose pathway, in which GDP-D-mannose is synthesized from fructose-6-phosphate. In Mycobacterium tuberculosis, the causative agent of tuberculosis, PMM is involved in the biosynthesis of mannosylated lipoglycans that participate in the association of mycobacteria with host macrophage phagocytic receptors. ManB belongs to the the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrall
Probab=65.96 E-value=6.9 Score=41.93 Aligned_cols=64 Identities=19% Similarity=0.103 Sum_probs=42.5
Q ss_pred chhhHHHHHHHhhcCCC----CCCeEEEeCCcccccc---hhhHHHHHhhCCCceEEEeecCCcchHHHHHHHHH
Q psy5979 3 YTENFIQSILTALGDKL----KGSVLVVGGDGRYFGD---VAVDKIIKISGIRSVLVVGGDGRYFGDVAVDKIIK 70 (499)
Q Consensus 3 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~---~a~~~~~~~~~~~~~VvVg~D~R~~s~~~a~a~a~ 70 (499)
+|..|+..|+.||.+-+ ++++|+||+|+|+.+. .|+.+.|... +-.|+.. .....|++..++..
T Consensus 14 ltpe~~~~l~~a~~~~l~~~~~~~~VvVG~D~R~~s~~l~~a~~~gL~~~--Gv~V~~~--g~~pTP~~~~a~~~ 84 (459)
T cd03088 14 LTDEVCYAYTRAFLQHLESKFPGDTVAVGRDLRPSSPRIAAACAAALRDA--GFRVVDC--GAVPTPALALYAMK 84 (459)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCCcchHHHHHHHHHHHHHC--CCEEEEe--CCCCCHHHHHHHHH
Confidence 78999999999985433 3678999999999663 4444445422 3344443 35556777776653
No 69
>cd03089 PMM_PGM The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other membe
Probab=65.76 E-value=5.4 Score=42.52 Aligned_cols=64 Identities=23% Similarity=0.158 Sum_probs=42.4
Q ss_pred CchhhHHHHHHHhhcCCCC---CCeEEEeCCccccc---chhhHHHHHhhCCCceEEEeecCCcchHHHHHHHH
Q psy5979 2 HYTENFIQSILTALGDKLK---GSVLVVGGDGRYFG---DVAVDKIIKISGIRSVLVVGGDGRYFGDVAVDKII 69 (499)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~---~~a~~~~~~~~~~~~~VvVg~D~R~~s~~~a~a~a 69 (499)
.||.+|+..|+.||.+-++ +.+|+||+|+|+.+ +.|..+.+...| -.|+.. . -...+++..++.
T Consensus 14 ~lt~~~v~~l~~a~~~~l~~~~~~~VvVg~D~R~~s~~~~~a~~~gL~s~G--~~V~~~-g-~~pTP~~~~~v~ 83 (443)
T cd03089 14 ELTEEIAYAIGRAFGSWLLEKGAKKVVVGRDGRLSSPELAAALIEGLLAAG--CDVIDI-G-LVPTPVLYFATF 83 (443)
T ss_pred ccCHHHHHHHHHHHHHHHHhcCCCeEEEEECCCCCHHHHHHHHHHHHHHcC--CcEEEe-C-CcchHHHHHHHh
Confidence 4899999999999865543 57899999999965 355555555333 334443 2 444566666554
No 70
>cd03085 PGM1 Phosphoglucomutase 1 (PGM1) catalyzes the bidirectional interconversion of glucose-1-phosphate (G-1-P) and glucose-6-phosphate (G-6-P) via a glucose 1,6-diphosphate intermediate, an important metabolic step in prokaryotes and eukaryotes. In one direction, G-1-P produced from sucrose catabolism is converted to G-6-P, the first intermediate in glycolysis. In the other direction, conversion of G-6-P to G-1-P generates a substrate for synthesis of UDP-glucose which is required for synthesis of a variety of cellular constituents including cell wall polymers and glycoproteins. The PGM1 family also includes a non-enzymatic PGM-related protein (PGM-RP) thought to play a structural role in eukaryotes, as well as pp63/parafusin, a phosphoglycoprotein that plays an important role in calcium-regulated exocytosis in ciliated protozoans. PGM1 belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl t
Probab=64.51 E-value=7.9 Score=42.51 Aligned_cols=66 Identities=30% Similarity=0.425 Sum_probs=40.0
Q ss_pred CchhhHHHHHHHhh----c-CCCCCCeEEEeCCccccc---chhhHHHHHhhCCCceEEEe-ecCCcchHHHHHHHH
Q psy5979 2 HYTENFIQSILTAL----G-DKLKGSVLVVGGDGRYFG---DVAVDKIIKISGIRSVLVVG-GDGRYFGDVAVDKII 69 (499)
Q Consensus 2 ~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~---~~a~~~~~~~~~~~~~VvVg-~D~R~~s~~~a~a~a 69 (499)
.+|++|+..++.|. - ...++.+|+||+|+|+.| +.+.++.+. ..+-.|+.. ++.-...|++.-++-
T Consensus 25 ~l~~~~~~~~~~a~~~~~~~~~~~~~~VvVG~D~R~~S~~~a~~~a~~L~--~~G~~V~~~~~~G~~pTP~l~fav~ 99 (548)
T cd03085 25 FQQPNYLENFVQSIFNALPPEKLKGATLVVGGDGRYYNKEAIQIIIKIAA--ANGVGKVVVGQNGLLSTPAVSAVIR 99 (548)
T ss_pred ccCHHHHHHHHHHHHHHHHhccCCCCeEEEEECCCcChHHHHHHHHHHHH--HCCCeEEEeCCCCccCchHHHHHHH
Confidence 46778777777644 1 212345799999999955 244444444 134455554 345566677777664
No 71
>PRK14317 glmM phosphoglucosamine mutase; Provisional
Probab=63.37 E-value=5.8 Score=42.61 Aligned_cols=33 Identities=18% Similarity=0.164 Sum_probs=27.5
Q ss_pred CchhhHHHHHHHhhcCCC-----CCCeEEEeCCccccc
Q psy5979 2 HYTENFIQSILTALGDKL-----KGSVLVVGGDGRYFG 34 (499)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 34 (499)
.+|.+|+..|+.|+++-+ ++.+|++|+|+|..+
T Consensus 31 ~ltpe~a~~lg~a~g~~l~~~~~~~~~VvVG~D~R~ss 68 (465)
T PRK14317 31 LLTAPLALQVGFWAGQVLRQTAPGEGPVLIGQDSRNSS 68 (465)
T ss_pred ccCHHHHHHHHHHHHHHHHhccCCCCcEEEEECCCCCH
Confidence 589999999999886544 467799999999976
No 72
>cd05802 GlmM GlmM is a bacterial phosphoglucosamine mutase (PNGM) that belongs to the alpha-D-phosphohexomutase superfamily. It is required for the interconversion of glucosamine-6-phosphate and glucosamine-1-phosphate in the biosynthetic pathway of UDP-N-acetylglucosamine, an essential precursor to components of the cell envelope. In order to be active, GlmM must be phosphorylated, which can occur via autophosphorylation or by the Ser/Thr kinase StkP. GlmM functions in a classical ping-pong bi-bi mechanism with glucosamine-1,6-diphosphate as an intermediate. Other members of the alpha-D-phosphohexomutase superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=63.11 E-value=9.4 Score=40.53 Aligned_cols=66 Identities=20% Similarity=0.177 Sum_probs=44.4
Q ss_pred CCchhhHHHHHHHhhcCCCC----CCeEEEeCCccccc---chhhHHHHHhhCCCceEEEeecCCcchHHHHHHHHH
Q psy5979 1 EHYTENFIQSILTALGDKLK----GSVLVVGGDGRYFG---DVAVDKIIKISGIRSVLVVGGDGRYFGDVAVDKIIK 70 (499)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~---~~a~~~~~~~~~~~~~VvVg~D~R~~s~~~a~a~a~ 70 (499)
+.+|.+|+..|+.||++-++ +..|++|+|+|+.+ ..|+.+.+.+.| -.|+-- .-...+++..++..
T Consensus 13 ~~lt~e~~~~lg~a~~~~l~~~~~~~~VvVg~D~R~ss~~l~~a~~~gL~s~G--~~V~~~--g~~pTP~~~~av~~ 85 (434)
T cd05802 13 EPLTPELALKLGRAAGKVLGKGGGRPKVLIGKDTRISGYMLESALAAGLTSAG--VDVLLL--GVIPTPAVAYLTRK 85 (434)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHHCC--CcEEEE--cccchHHHHHHHHH
Confidence 35899999999999865443 57899999999966 355555555333 334433 24556777776653
No 73
>PRK09542 manB phosphomannomutase/phosphoglucomutase; Reviewed
Probab=62.53 E-value=5.8 Score=42.31 Aligned_cols=42 Identities=17% Similarity=0.309 Sum_probs=31.8
Q ss_pred CchhhHHHHHHHhhcCCCC---CCeEEEeCCccccc---chhhHHHHH
Q psy5979 2 HYTENFIQSILTALGDKLK---GSVLVVGGDGRYFG---DVAVDKIIK 43 (499)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~---~~a~~~~~~ 43 (499)
.+|..|+..|+.||.+-++ +++|++|+|+|+.| ..|+.+.+.
T Consensus 13 ~lt~~~v~~l~~a~~~~l~~~~~~~VvVg~D~R~~s~~l~~a~~~gL~ 60 (445)
T PRK09542 13 QIDEDLVRDVGAAFARLMRAEGATTVVIGHDMRDSSPELAAAFAEGVT 60 (445)
T ss_pred CcCHHHHHHHHHHHHHHHHHcCCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4799999999999865443 67899999999976 344455444
No 74
>PF02878 PGM_PMM_I: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; InterPro: IPR005844 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain I found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 3I3W_B 1WQA_C 1KFQ_B 1KFI_A 2Z0F_A 2FKM_X 3C04_A 1K2Y_X 1P5G_X 2H4L_X ....
Probab=62.12 E-value=9.7 Score=33.41 Aligned_cols=64 Identities=22% Similarity=0.139 Sum_probs=39.6
Q ss_pred chhhHHHHHHHhhc----CCCCCCeEEEeCCcccccc---hhhHHHHHhhCCCceEEEeecCCcchHHHHHHHHH
Q psy5979 3 YTENFIQSILTALG----DKLKGSVLVVGGDGRYFGD---VAVDKIIKISGIRSVLVVGGDGRYFGDVAVDKIIK 70 (499)
Q Consensus 3 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~---~a~~~~~~~~~~~~~VvVg~D~R~~s~~~a~a~a~ 70 (499)
+|+.++..++.|+. ....+..|+||+|.|..+. .++...+.. .+-.|..-. -...+++..++..
T Consensus 18 lt~~~~~~~~~a~~~~~~~~~~~~~VvVg~D~R~~s~~~~~~~~~~l~~--~G~~V~~~g--~~~tP~~~~~~~~ 88 (137)
T PF02878_consen 18 LTPEFAARLAQAFASYLKEKGNGSRVVVGRDTRPSSPMLAKALAAGLRA--NGVDVIDIG--LVPTPALSFAIRQ 88 (137)
T ss_dssp BSHHHHHHHHHHHHHHHHHTTTSSEEEEEE-SSTTHHHHHHHHHHHHHH--TTEEEEEEE--EB-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhcccCCCCeEEEEEcccCCHHHHHHHHHHHHhh--ccccccccc--ccCcHHhhhhccc
Confidence 68888888877773 3466899999999999662 344444442 233333322 5566777766655
No 75
>PRK14322 glmM phosphoglucosamine mutase; Provisional
Probab=62.08 E-value=8.4 Score=40.86 Aligned_cols=33 Identities=27% Similarity=0.408 Sum_probs=28.0
Q ss_pred CchhhHHHHHHHhhcCCCCCCeEEEeCCccccc
Q psy5979 2 HYTENFIQSILTALGDKLKGSVLVVGGDGRYFG 34 (499)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (499)
.+|.+|+..|+.||++-++...|++|+|+|..+
T Consensus 18 ~ltpe~~~~lg~a~~~~l~~~~VvVg~D~R~ss 50 (429)
T PRK14322 18 TLTDELAFKVGKALGEIVGEGKVIVGKDTRVSG 50 (429)
T ss_pred CcCHHHHHHHHHHHhEEecCCcEEEEeCCCcCH
Confidence 589999999999998777544599999999965
No 76
>PRK14316 glmM phosphoglucosamine mutase; Provisional
Probab=58.73 E-value=10 Score=40.51 Aligned_cols=64 Identities=17% Similarity=0.049 Sum_probs=41.4
Q ss_pred CchhhHHHHHHHhhcCCC-----CCCeEEEeCCccccc---chhhHHHHHhhCCCceEEEeecCCcchHHHHHHHH
Q psy5979 2 HYTENFIQSILTALGDKL-----KGSVLVVGGDGRYFG---DVAVDKIIKISGIRSVLVVGGDGRYFGDVAVDKII 69 (499)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~---~~a~~~~~~~~~~~~~VvVg~D~R~~s~~~a~a~a 69 (499)
.+|.+|+..|+.||++-+ .+..|++|+|+|..+ ..|+.+.+.. .+-.|+.. .-...|++..++.
T Consensus 16 ~ltpe~~~~ig~a~~~~l~~~~~~~~~VvVg~D~R~ss~~l~~a~~~gL~s--~G~~V~~~--g~~pTP~~~~av~ 87 (448)
T PRK14316 16 ELTPELAFKLGRAGGYVLTKHETERPKVLVGRDTRISGDMLESALIAGLLS--VGAEVMRL--GVIPTPGVAYLTR 87 (448)
T ss_pred CCCHHHHHHHHHHHHHHHHhccCCCCeEEEEECCCcCHHHHHHHHHHHHHH--CCCEEEEe--cccchHHHHHHHH
Confidence 589999999999986433 256799999999944 2344444442 23344442 2455577777664
No 77
>COG0698 RpiB Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]
Probab=58.56 E-value=36 Score=30.65 Aligned_cols=31 Identities=19% Similarity=0.222 Sum_probs=27.4
Q ss_pred eEEEeecCCcchHHHHHHHHHHHHHCCCeEEEe
Q psy5979 50 VLVVGGDGRYFGDVAVDKIIKISAANGVAKLIV 82 (499)
Q Consensus 50 ~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~ 82 (499)
+|+||.|. ++..+++.+..-|.+.|++|+|+
T Consensus 2 kIaig~Dh--ag~~lK~~I~~~Lk~~g~~v~D~ 32 (151)
T COG0698 2 KIAIGSDH--AGYELKEIIIDHLKSKGYEVIDF 32 (151)
T ss_pred cEEEEcCc--ccHHHHHHHHHHHHHCCCEEEec
Confidence 57888885 56789999999999999999997
No 78
>KOG2451|consensus
Probab=58.32 E-value=17 Score=37.61 Aligned_cols=79 Identities=19% Similarity=0.218 Sum_probs=49.5
Q ss_pred cccchh---hHHHHHhhCCCceEEEeecC----------CcchHHHHHHHHHHHHHCCCeEEEeCCCcccchhHHHHHHH
Q psy5979 32 YFGDVA---VDKIIKISGIRSVLVVGGDG----------RYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIR 98 (499)
Q Consensus 32 ~~~~~a---~~~~~~~~~~~~~VvVg~D~----------R~~s~~~a~a~a~gL~s~Gi~V~~~~~~g~~pTP~~~fav~ 98 (499)
|+.++| ||.+++....+.++++=+-. .+-+.|+.+-..+.| +.||.|+.- -.--||....|+-
T Consensus 131 WyAeEA~RvyGdii~s~~~~rr~i~ikQPvGV~alItPWNFP~AMItRK~gAAL-AaGCTvVvk---Ps~~TPlsaLala 206 (503)
T KOG2451|consen 131 WYAEEARRVYGDIIPSLNPNRRLIVIKQPVGVVALITPWNFPAAMITRKAGAAL-AAGCTVVVK---PSEDTPLSALALA 206 (503)
T ss_pred HHHHHhhhhhccccCCCCCCceEEEEeccceeEEEecCcCChHHHHHhHHHHHH-hcCceEEEc---cCCCCchHHHHHH
Confidence 344544 88888766666665544332 466889999888776 789999875 3345666555554
Q ss_pred Hc----CCccce--EEcCCCCC
Q psy5979 99 KH----QVTGGI--VLTASHNP 114 (499)
Q Consensus 99 ~~----~~~gGI--~ITaSHNP 114 (499)
++ |...|+ +||++||.
T Consensus 207 ~lA~~AGiP~Gv~NVit~~~~~ 228 (503)
T KOG2451|consen 207 KLAEEAGIPAGVLNVITADASN 228 (503)
T ss_pred HHHHHcCCCCcceEEEecCCCC
Confidence 54 333343 56765543
No 79
>PRK07564 phosphoglucomutase; Validated
Probab=56.72 E-value=15 Score=40.27 Aligned_cols=66 Identities=23% Similarity=0.291 Sum_probs=43.6
Q ss_pred CchhhHHHHHHHhhcCCCC--C--CeEEEeCCccccc---chhhHHHHHhhCCCceEEEeec-CCcchHHHHHHHH
Q psy5979 2 HYTENFIQSILTALGDKLK--G--SVLVVGGDGRYFG---DVAVDKIIKISGIRSVLVVGGD-GRYFGDVAVDKII 69 (499)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~---~~a~~~~~~~~~~~~~VvVg~D-~R~~s~~~a~a~a 69 (499)
.||+++++.|+.|+..-++ + .+|+||+|+|+.+ +.|+++.+.. .+-.|++.-| .-...+++.-++.
T Consensus 53 ~lt~~~v~~i~~a~a~~~~~~~~~~~VvVG~D~R~~S~~~a~a~a~gL~s--~Gi~V~~~~~~g~~pTP~~~~av~ 126 (543)
T PRK07564 53 SFNENHILAIFQAICEYRGKQGITGPLFVGGDTHALSEPAIQSALEVLAA--NGVGVVIVGRGGYTPTPAVSHAIL 126 (543)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCeEEEEecCCcCCHHHHHHHHHHHHH--CCCEEEEeCCCCcCCchHHHHHHH
Confidence 4899999999988743321 1 3699999999966 3455555542 3445666544 4556677776654
No 80
>PLN02307 phosphoglucomutase
Probab=56.06 E-value=23 Score=39.13 Aligned_cols=66 Identities=32% Similarity=0.433 Sum_probs=41.0
Q ss_pred chhhHHHHHHHhh-c----CCCCCCeEEEeCCccccc---chhhHHHHHhhCCCceEEEe-ecCCcchHHHHHHHHH
Q psy5979 3 YTENFIQSILTAL-G----DKLKGSVLVVGGDGRYFG---DVAVDKIIKISGIRSVLVVG-GDGRYFGDVAVDKIIK 70 (499)
Q Consensus 3 ~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~---~~a~~~~~~~~~~~~~VvVg-~D~R~~s~~~a~a~a~ 70 (499)
.|++++..|++|+ + .+..+.+|+||+|+|+.| +.+.++.+.. .+-.|+.. .+.-...|+++-++-.
T Consensus 38 l~~~~~~~ig~a~~~~~~~~~~~~~~VvVG~D~R~~S~~fa~~~a~~L~a--~Gi~V~~~~~~G~~PTP~vsfav~~ 112 (579)
T PLN02307 38 MQENYLANFVQALFNALPAEKVKGATLVLGGDGRYFNKEAIQIIIKIAAA--NGVRRVWVGQNGLLSTPAVSAVIRE 112 (579)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCcchHHHHHHHHHHHHH--CCCEEEEeCCCCccCchHHHHHHHH
Confidence 5778787777744 2 223455799999999965 3444444441 34455554 4456666888877653
No 81
>PRK14318 glmM phosphoglucosamine mutase; Provisional
Probab=56.04 E-value=9.2 Score=40.82 Aligned_cols=34 Identities=29% Similarity=0.295 Sum_probs=27.5
Q ss_pred CCchhhHHHHHHHhhcCCCC--------CCeEEEeCCccccc
Q psy5979 1 EHYTENFIQSILTALGDKLK--------GSVLVVGGDGRYFG 34 (499)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~ 34 (499)
+.+|..|+..|+.||++-++ +.+|++|+|+|..+
T Consensus 16 ~~ltpe~~~~lg~a~~~~l~~~~~~~~~~~~VvVg~D~R~ss 57 (448)
T PRK14318 16 RDLTAELALALGAAAARVLGHAGRPGGRRPVAVVGRDPRASG 57 (448)
T ss_pred CccCHHHHHHHHHHHHHHHHhcccccCCCCeEEEEeCCCcCH
Confidence 35899999999999865442 56799999999965
No 82
>PRK14323 glmM phosphoglucosamine mutase; Provisional
Probab=54.96 E-value=8.7 Score=40.88 Aligned_cols=33 Identities=30% Similarity=0.475 Sum_probs=27.1
Q ss_pred CchhhHHHHHHHhhcCCCC----CCeEEEeCCccccc
Q psy5979 2 HYTENFIQSILTALGDKLK----GSVLVVGGDGRYFG 34 (499)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 34 (499)
.+|.+|+..|+.||++-++ +.+|++|+|+|..+
T Consensus 19 ~lt~e~~~~lg~a~g~~l~~~~~~~~VvVg~D~R~ss 55 (440)
T PRK14323 19 PLTPEFVLKLGQAAGEVFKRHGPRPVVLLGKDTRQSG 55 (440)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCeEEEEeCCCccH
Confidence 3899999999999865443 56799999999965
No 83
>PRK14319 glmM phosphoglucosamine mutase; Provisional
Probab=54.86 E-value=13 Score=39.34 Aligned_cols=60 Identities=17% Similarity=0.110 Sum_probs=39.9
Q ss_pred CchhhHHHHHHHhhcCCCCCCeEEEeCCccccc---chhhHHHHHhhCCCceEEEeecCCcchHHHHH
Q psy5979 2 HYTENFIQSILTALGDKLKGSVLVVGGDGRYFG---DVAVDKIIKISGIRSVLVVGGDGRYFGDVAVD 66 (499)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~a~~~~~~~~~~~~~VvVg~D~R~~s~~~a~ 66 (499)
.+|.+|+..|+.||++-++ .+|++|.|+|..+ ..|+.+-+... +-.|+.- .-...|++.-
T Consensus 16 ~ltpe~~~~lg~a~g~~~~-~~V~Vg~D~R~ss~~l~~a~~~gL~s~--G~~V~d~--g~~pTP~~~~ 78 (430)
T PRK14319 16 FLTPEIAFRLGNALGNMVD-KKIFIAKDTRASGDMLEAALVAGITSA--GADVYRC--GVLPTPALAL 78 (430)
T ss_pred CcCHHHHHHHHHHHHhccC-CcEEEEeCCCCChHHHHHHHHHHHHHC--CCeEEEe--CCcCcHHHHH
Confidence 5899999999999987776 5799999999955 34455555432 3333322 1344455554
No 84
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=54.85 E-value=80 Score=27.84 Aligned_cols=56 Identities=14% Similarity=0.242 Sum_probs=35.5
Q ss_pred CceEEEe---ecCCcchHHHHHHHHHHHHHCCCeEEEeCCCcccchhHHHHHHHHcCCccceEEc
Q psy5979 48 RSVLVVG---GDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQVTGGIVLT 109 (499)
Q Consensus 48 ~~~VvVg---~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~g~~pTP~~~fav~~~~~~gGI~IT 109 (499)
..+|+++ -|.+.-+.. .++..|.++|++|++++ --+|..-+--++.+.+++ .|.++
T Consensus 3 ~~~vl~~~~~gD~H~lG~~---iv~~~lr~~G~eVi~LG--~~vp~e~i~~~a~~~~~d-~V~lS 61 (137)
T PRK02261 3 KKTVVLGVIGADCHAVGNK---ILDRALTEAGFEVINLG--VMTSQEEFIDAAIETDAD-AILVS 61 (137)
T ss_pred CCEEEEEeCCCChhHHHHH---HHHHHHHHCCCEEEECC--CCCCHHHHHHHHHHcCCC-EEEEc
Confidence 3455554 455555543 45556789999999993 257777777777776554 34443
No 85
>cd05800 PGM_like2 This PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily and is found in both archaea and bacteria. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four structural domains (subdomains) with a centrally located active site formed by four loops, one from each subdomain. All four subdomains are included in this alignment model.
Probab=53.07 E-value=18 Score=38.79 Aligned_cols=65 Identities=18% Similarity=0.225 Sum_probs=42.5
Q ss_pred CchhhHHHHHHHhhcCCC-----CCCeEEEeCCccccc---chhhHHHHHhhCCCceEEEeecCCcchHHHHHHHH
Q psy5979 2 HYTENFIQSILTALGDKL-----KGSVLVVGGDGRYFG---DVAVDKIIKISGIRSVLVVGGDGRYFGDVAVDKII 69 (499)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~---~~a~~~~~~~~~~~~~VvVg~D~R~~s~~~a~a~a 69 (499)
.+|.+|+-.|+.||.+-+ .+.+|++|+|+|+.+ ..|+++.+... +-.|+.-.. -...|.+..++.
T Consensus 15 ~lt~~~~~~lg~a~~~~l~~~~~~~~~Vvvg~D~R~ss~~l~~a~~~gL~s~--G~~V~~~~g-~~pTP~~~~a~~ 87 (461)
T cd05800 15 DFTFENVRRVAQAIADYLKEEGGGGRGVVVGYDTRFLSEEFARAVAEVLAAN--GIDVYLSDR-PVPTPAVSWAVK 87 (461)
T ss_pred CccHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCcCcHHHHHHHHHHHHHC--CCEEEEcCC-CCCchHHHHHHH
Confidence 478999999999986443 367899999999965 45566666532 334443322 344466666554
No 86
>PRK08621 galactose-6-phosphate isomerase subunit LacA; Reviewed
Probab=52.43 E-value=41 Score=30.00 Aligned_cols=71 Identities=14% Similarity=0.185 Sum_probs=44.1
Q ss_pred EEEEcCCCCC--ChHHHHHHHHHhcCCCcceeeecccCCCCCCCCCCCCcccHHHHHHHHHhCCCcEEEeeCCCCCeeEE
Q psy5979 214 KLLINAMHGV--TGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDPNLTYAADLVQAMQAGDFDLGAAFDGDGDRNMV 291 (499)
Q Consensus 214 kVvvD~~~G~--~~~~~~~il~~~lG~~~~~~v~~~~d~~F~~~~p~P~~~~l~~l~~~v~~~~adlgia~D~DgDRl~v 291 (499)
||++-+-|+. -...+.+.| ++.|++++. +- ++ .|..-+.....+.+.|.+..+|.||.+.|.|==+.+
T Consensus 2 kI~igsDhaG~~lK~~l~~~L-~~~G~eV~D-~G--~~------~~~dYpd~a~~va~~V~~~~~~~GIliCGTGiG~si 71 (142)
T PRK08621 2 AIIIGADKAGFELKEVVKDYL-EDNKYEVVD-VT--EE------GAEDFVDSTLAVAKEVNKSEDNLGIVIDAYGAGSFM 71 (142)
T ss_pred EEEEEeCcchHHHHHHHHHHH-HHCCCEEEE-CC--CC------CCCCcHHHHHHHHHHHHcCCCceEEEEcCCChhhhh
Confidence 6777777752 233555667 788987642 22 21 111123455678888888889999998888865555
Q ss_pred Ecc
Q psy5979 292 LGK 294 (499)
Q Consensus 292 vd~ 294 (499)
.-+
T Consensus 72 aAN 74 (142)
T PRK08621 72 VAT 74 (142)
T ss_pred hhh
Confidence 433
No 87
>cd03364 TOPRIM_DnaG_primases TOPRIM_DnaG_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of proteins similar to Escherichia coli DnaG. Primases synthesize RNA primers for the initiation of DNA replication. DnaG type primases are often closely associated with DNA helicases in primosome assemblies. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function. E. coli DnaG is a single subunit enzyme.
Probab=51.73 E-value=45 Score=26.04 Aligned_cols=35 Identities=14% Similarity=0.202 Sum_probs=32.4
Q ss_pred CceEEEeecCCcchHHHHHHHHHHHHHCCCeEEEe
Q psy5979 48 RSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIV 82 (499)
Q Consensus 48 ~~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~ 82 (499)
.++|++..|+-..++..++.++.-|...|++|..+
T Consensus 43 ~~~vii~~D~D~aG~~a~~~~~~~l~~~g~~~~~~ 77 (79)
T cd03364 43 AKEVILAFDGDEAGQKAALRALELLLKLGLNVRVL 77 (79)
T ss_pred CCeEEEEECCCHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 58999999999999999999999999999998764
No 88
>TIGR01123 ilvE_II branched-chain amino acid aminotransferase, group II. Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family less similar to the DAAT family.
Probab=51.21 E-value=90 Score=31.46 Aligned_cols=72 Identities=13% Similarity=0.001 Sum_probs=49.0
Q ss_pred HHHHhCCCcEEEeeCCCCC---------eeEEEccCceEeCCCcHHHHHHHHHhcCchhhhcCccceeeeccchHHHHHH
Q psy5979 269 QAMQAGDFDLGAAFDGDGD---------RNMVLGKKAFFVNPSDSLAVLAAHLDSIPYFKKTGVKGYARSMPTGAAVDRV 339 (499)
Q Consensus 269 ~~v~~~~adlgia~D~DgD---------Rl~vvd~~G~~l~~d~~~~lla~~ll~~~~~~~~~~~~vv~~~~ss~~l~~i 339 (499)
+..++.++|=++.+|+||+ .+.++.++|.+++|.. .. .++ +-.+-..+-++
T Consensus 168 ~eA~~~g~deal~ld~~g~g~v~E~~~sNlf~v~~~g~l~Tp~l----------------~~---~~L-~GItR~~vi~l 227 (313)
T TIGR01123 168 AKAAEQGCDQVVYLDPVEHTYIEEVGAMNFFFITGDGELVTPPL----------------SG---SIL-PGITRDSLLQL 227 (313)
T ss_pred HHHHHCCCCEEEEEeCCCCeEEEEcCcEeEEEEEcCCEEEeCCC----------------CC---CCC-cchHHHHHHHH
Confidence 3446779999999999998 5555655556666531 01 122 22334455578
Q ss_pred HHHCCCcEEEeecchhHHhhh
Q psy5979 340 AKANNKELFEVPTGWKYFGNL 360 (499)
Q Consensus 340 a~~~g~~v~~t~tG~k~i~~~ 360 (499)
|++.|++|.+.+.....+.+.
T Consensus 228 ~~~~Gi~v~e~~i~~~~l~~A 248 (313)
T TIGR01123 228 AKDLGMEVEERRIDIDELKAF 248 (313)
T ss_pred HHHcCCeEEEEecCHHHHHHH
Confidence 899999999999998887765
No 89
>PRK10887 glmM phosphoglucosamine mutase; Provisional
Probab=50.92 E-value=15 Score=39.19 Aligned_cols=64 Identities=17% Similarity=0.177 Sum_probs=41.8
Q ss_pred CchhhHHHHHHHhhcCCCC---CCeEEEeCCccccc---chhhHHHHHhhCCCceEEEeecCCcchHHHHHHHH
Q psy5979 2 HYTENFIQSILTALGDKLK---GSVLVVGGDGRYFG---DVAVDKIIKISGIRSVLVVGGDGRYFGDVAVDKII 69 (499)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~---~~a~~~~~~~~~~~~~VvVg~D~R~~s~~~a~a~a 69 (499)
.+|.+|+..|+.||++-++ +++|++|+|+|..+ ..|+++.+.. .+-.|+.- .-...|.+..++.
T Consensus 17 ~ltpe~~~~lg~a~a~~l~~~~~~~VvVg~D~R~ss~~l~~a~~~gL~s--~Gv~V~~~--g~~pTP~~~~a~~ 86 (443)
T PRK10887 17 PITPDFVLKLGWAAGKVLARQGRPKVLIGKDTRISGYMLESALEAGLAA--AGVDVLLT--GPMPTPAVAYLTR 86 (443)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCcEEEEeCCCCCHHHHHHHHHHHHHH--CCCeEEEE--CCcChHHHHHHHH
Confidence 4899999999999865443 36799999999854 3455554443 33344433 2445566666654
No 90
>cd05799 PGM2 This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2 is thought to be a phosphopentomutase that catalyzes the conversion of the nucleoside breakdown products, ribose-1-phosphate and deoxyribose-1-phosphate to the corresponding 5-phosphopentoses. PGM2L1 is thought to catalyze the 1,3-bisphosphoglycerate-dependent synthesis of glucose 1,6-bisphosphate and other aldose-bisphosphates that serve as cofactors for several sugar phosphomutases and possibly also as regulators of glycolytic enzymes. PGM2 and PGM2L1 belong to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/ph
Probab=50.26 E-value=23 Score=38.16 Aligned_cols=65 Identities=12% Similarity=0.048 Sum_probs=41.3
Q ss_pred CchhhHHHHHHHhhcCCC-------CCCeEEEeCCccccc---chhhHHHHHhhCCCceEEEeecCCcchHHHHHHHH
Q psy5979 2 HYTENFIQSILTALGDKL-------KGSVLVVGGDGRYFG---DVAVDKIIKISGIRSVLVVGGDGRYFGDVAVDKII 69 (499)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~---~~a~~~~~~~~~~~~~VvVg~D~R~~s~~~a~a~a 69 (499)
++|+.++..|+.||.+-+ ++.+|+||+|+|+.+ ..|+++.+.. .+-.|+.-.+ -...|.+..++.
T Consensus 19 ~l~~~~~~~l~~a~~~~l~~~~~~~~~~~V~Vg~D~R~~s~~~~~a~~~gL~s--~Gi~V~~~g~-~~ptP~~~~~i~ 93 (487)
T cd05799 19 RMNDYTVRQATQGLANYLKKKGPDAKNRGVVIGYDSRHNSREFAELTAAVLAA--NGIKVYLFDD-LRPTPLLSFAVR 93 (487)
T ss_pred cccHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCCCChHHHHHHHHHHHHH--CCCEEEEeCC-CCCCcHHHHHHH
Confidence 478889999999986433 557899999999965 3555555552 2334443332 334465555543
No 91
>PRK08622 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=50.14 E-value=51 Score=30.34 Aligned_cols=66 Identities=20% Similarity=0.221 Sum_probs=37.9
Q ss_pred EEEEcCCCCC--ChHHHHHHHHHhcCCCcceeeecccCCCCCCCCCCCCcccHHHHHHHHHhCCCcEEEeeCCCCC
Q psy5979 214 KLLINAMHGV--TGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDPNLTYAADLVQAMQAGDFDLGAAFDGDGD 287 (499)
Q Consensus 214 kVvvD~~~G~--~~~~~~~il~~~lG~~~~~~v~~~~d~~F~~~~p~P~~~~l~~l~~~v~~~~adlgia~D~DgD 287 (499)
||++-+-|.. -...+.+.| ++.|.+|+ +.-+... .|..-++....+.+.|.+..+|.||.+.+.|=
T Consensus 2 kI~IgsDhaG~~lK~~l~~~L-~~~G~eV~---D~G~~~~----e~~dYpd~a~~va~~V~~g~~d~GIliCGTGi 69 (171)
T PRK08622 2 KIAIGCDHIVTDEKMAVSDYL-KSKGHEVI---DVGTYDF----TRTHYPIFGKKVGEAVASGEADLGVCICGTGV 69 (171)
T ss_pred EEEEEeCcchHHHHHHHHHHH-HHCCCEEE---EcCCCCC----CCCChHHHHHHHHHHHHcCCCcEEEEEcCCcH
Confidence 6777777753 233455556 77888754 2211110 11112344566777787777888887777663
No 92
>TIGR01118 lacA galactose-6-phosphate isomerase, LacA subunit. This family contains members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=49.61 E-value=52 Score=29.31 Aligned_cols=71 Identities=13% Similarity=0.185 Sum_probs=43.8
Q ss_pred cEEEEcCCCCC--ChHHHHHHHHHhcCCCcceeeecccCCCCCCCCCCCCcccHHHHHHHHHhCCCcEEEeeCCCCCeeE
Q psy5979 213 FKLLINAMHGV--TGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDPNLTYAADLVQAMQAGDFDLGAAFDGDGDRNM 290 (499)
Q Consensus 213 lkVvvD~~~G~--~~~~~~~il~~~lG~~~~~~v~~~~d~~F~~~~p~P~~~~l~~l~~~v~~~~adlgia~D~DgDRl~ 290 (499)
+||++-+-|+. -...+.+.| ++.|++++. +- ++ .+..-+.....+.+.|.+..+|.||.++|.|==+.
T Consensus 1 MkI~IgsDh~G~~lK~~i~~~L-~~~G~eV~D-~G--~~------~~~dYpd~a~~va~~V~~~e~~~GIliCGtGiG~s 70 (141)
T TIGR01118 1 MAIIIGSDLAGKRLKDVIKNFL-VDNGFEVID-VT--EG------DGQDFVDVTLAVASEVQKDEQNLGIVIDAYGAGSF 70 (141)
T ss_pred CEEEEEeCcchHHHHHHHHHHH-HHCCCEEEE-cC--CC------CCCCcHHHHHHHHHHHHcCCCceEEEEcCCCHhHh
Confidence 36777777763 123445556 778887642 22 11 01111345567888888889999999998886555
Q ss_pred EEc
Q psy5979 291 VLG 293 (499)
Q Consensus 291 vvd 293 (499)
+.-
T Consensus 71 iaA 73 (141)
T TIGR01118 71 MVA 73 (141)
T ss_pred hhh
Confidence 543
No 93
>PRK14324 glmM phosphoglucosamine mutase; Provisional
Probab=48.82 E-value=12 Score=39.95 Aligned_cols=64 Identities=17% Similarity=0.087 Sum_probs=41.5
Q ss_pred CchhhHHHHHHHhhcCCCC--C--CeEEEeCCccccc---chhhHHHHHhhCCCceEEEeecCCcchHHHHHHHH
Q psy5979 2 HYTENFIQSILTALGDKLK--G--SVLVVGGDGRYFG---DVAVDKIIKISGIRSVLVVGGDGRYFGDVAVDKII 69 (499)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~---~~a~~~~~~~~~~~~~VvVg~D~R~~s~~~a~a~a 69 (499)
.+|..|+..|+.||++-++ + .+|+||+|+|..+ ..|+.+.+.. .+-.|+.. .-...|++.-++.
T Consensus 16 ~lt~~~~~~lg~a~g~~l~~~~~~~~V~Vg~D~R~ss~~l~~a~~~gL~s--~G~~V~~~--g~~pTP~~~~a~~ 86 (446)
T PRK14324 16 KLTAFLAMRLAMAAGIYFKKHSITNKILVGKDTRRSGYMIENALVSGLTS--VGYNVIQI--GPMPTPAIAFLTE 86 (446)
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCcCHHHHHHHHHHHHHH--CCCeEEEe--cCccHHHHHHHHh
Confidence 5899999999999864432 2 4799999999965 2444444542 23344433 2455677777654
No 94
>TIGR01455 glmM phosphoglucosamine mutase. This model describes GlmM, phosphoglucosamine mutase, also designated in MrsA and YhbF E. coli, UreC in Helicobacter pylori, and femR315 or FemD in Staphlococcus aureus. It converts glucosamine-6-phosphate to glucosamine-1-phosphate as part of the pathway toward UDP-N-acetylglucosamine for peptidoglycan and lipopolysaccharides.
Probab=48.37 E-value=19 Score=38.34 Aligned_cols=64 Identities=17% Similarity=0.133 Sum_probs=41.5
Q ss_pred CchhhHHHHHHHhhcCCCC-----CCeEEEeCCccccc---chhhHHHHHhhCCCceEEEeecCCcchHHHHHHHH
Q psy5979 2 HYTENFIQSILTALGDKLK-----GSVLVVGGDGRYFG---DVAVDKIIKISGIRSVLVVGGDGRYFGDVAVDKII 69 (499)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~---~~a~~~~~~~~~~~~~VvVg~D~R~~s~~~a~a~a 69 (499)
.+|..|+..|+.||++-++ +.+|++|+|+|+.+ ..|+++.|.. .+-.|+.. .-...|++..++.
T Consensus 14 ~ltp~~~~~l~~a~~~~l~~~~~~~~~V~Vg~D~R~~s~~l~~a~~~gL~s--~G~~V~~~--g~~pTP~~~~av~ 85 (443)
T TIGR01455 14 PLTAELALLLGAAAGRVLRQGRDTAPRVVIGKDTRLSGYMLENALAAGLNS--AGVDVLLL--GPLPTPAVAYLTR 85 (443)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCcChHHHHHHHHHHHHH--CCCeEEEe--CCcCcHHHHHHHH
Confidence 3899999999999864442 23699999999955 2444444442 34445444 2455677776654
No 95
>PF13662 Toprim_4: Toprim domain; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A.
Probab=48.15 E-value=44 Score=26.19 Aligned_cols=73 Identities=21% Similarity=0.151 Sum_probs=38.2
Q ss_pred hhHHHHHHHhhcCCCCCCeEEEeCCcccccchhhHHHHHhhCCCceEEEeecCCcchHHHHHHHHHHHHHCCCeEEE
Q psy5979 5 ENFIQSILTALGDKLKGSVLVVGGDGRYFGDVAVDKIIKISGIRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLI 81 (499)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~ 81 (499)
|.+.+++. ....+.++-..++|+...- .....-..+. .....|++..|.-..++..+..+..-|...|++|..
T Consensus 7 EG~~D~~~-l~~~g~~~~v~~~g~~~~~-~~~~~~~~~~--~~~~~Vii~~D~D~~G~~~a~~i~~~l~~~gi~v~~ 79 (81)
T PF13662_consen 7 EGEFDAIA-LEQAGYKNVVAVLGGNLSP-LDQILREKLE--KKVKEVIIAFDNDKAGEKAAQKIAKKLLPLGIRVTR 79 (81)
T ss_dssp SSHHHHHH-HHHTT-TTEEEESSSS----HHHHHHHHHH-----SEEEEEEESSHHHHHHHHHHHHHHG--------
T ss_pred CCHHHHHH-HHHhCCCeEEEECCCCCCh-HHHhChHhhh--ccCceEEEEeCcCHHHHHHHHHHHHHHHhhcccccc
Confidence 34444443 1123777777777644411 1111111112 114899999999999999999999999999999874
No 96
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=47.95 E-value=54 Score=29.46 Aligned_cols=68 Identities=25% Similarity=0.277 Sum_probs=39.2
Q ss_pred EEEEcCCCCC--ChHHHHHHHHHhcCCCcceeeecccCCCCCCCCCCCCcccHHHHHHHHHhCCCcEEEeeCCCCCe
Q psy5979 214 KLLINAMHGV--TGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDPNLTYAADLVQAMQAGDFDLGAAFDGDGDR 288 (499)
Q Consensus 214 kVvvD~~~G~--~~~~~~~il~~~lG~~~~~~v~~~~d~~F~~~~p~P~~~~l~~l~~~v~~~~adlgia~D~DgDR 288 (499)
||++-+-|.. -...+.+.| ++.|++++. +- ++. ...|..-++....+.+.|.+..+|.||.+.|.|==
T Consensus 2 kI~igsDhaG~~lK~~l~~~L-~~~g~eV~D-~G--~~~---~~~~~dYpd~a~~va~~V~~g~~~~GIliCGtGiG 71 (148)
T PRK05571 2 KIAIGSDHAGFELKEEIIEHL-EELGHEVID-LG--PDS---YDASVDYPDYAKKVAEAVVAGEADRGILICGTGIG 71 (148)
T ss_pred EEEEEeCCchHHHHHHHHHHH-HHCCCEEEE-cC--CCC---CCCCCCHHHHHHHHHHHHHcCCCCEEEEEcCCcHH
Confidence 6777777752 223455666 788887642 22 110 00011223455677788888788888888777643
No 97
>COG1109 {ManB} Phosphomannomutase [Carbohydrate transport and metabolism]
Probab=47.86 E-value=14 Score=39.60 Aligned_cols=33 Identities=33% Similarity=0.429 Sum_probs=27.7
Q ss_pred CchhhHHHHHHHhhcCCCCC---CeEEEeCCccccc
Q psy5979 2 HYTENFIQSILTALGDKLKG---SVLVVGGDGRYFG 34 (499)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 34 (499)
.+|.+|+..++.|+++-++. ..|+||+|.|+-+
T Consensus 22 ~lt~~~~~~~g~a~~~~l~~~~~~~VvVG~D~R~ss 57 (464)
T COG1109 22 ELTPEFALKLGRALGSVLRKKGAPKVVVGRDTRLSS 57 (464)
T ss_pred CcCHHHHHHHHHHHHHHHhhcCCCeEEEEecCCCCH
Confidence 57899999999999755554 7999999999965
No 98
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=46.96 E-value=1e+02 Score=28.87 Aligned_cols=61 Identities=18% Similarity=0.195 Sum_probs=42.0
Q ss_pred CceEEEee---cCCcchHHHHHHHHHHHHHCCCeEEEeCCCcccchhHHHHHHHHcCCccceEEcCCCCC
Q psy5979 48 RSVLVVGG---DGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQVTGGIVLTASHNP 114 (499)
Q Consensus 48 ~~~VvVg~---D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~g~~pTP~~~fav~~~~~~gGI~ITaSHNP 114 (499)
.++|+++. |.+.-+ ++.++..|.++|++|++++ .-+|..-+--++.+.+++ -|.++++-.+
T Consensus 84 ~~~vv~~t~~gd~H~lG---~~~v~~~l~~~G~~vi~LG--~~vp~e~~v~~~~~~~pd-~v~lS~~~~~ 147 (197)
T TIGR02370 84 LGKVVCGVAEGDVHDIG---KNIVVTMLRANGFDVIDLG--RDVPIDTVVEKVKKEKPL-MLTGSALMTT 147 (197)
T ss_pred CCeEEEEeCCCchhHHH---HHHHHHHHHhCCcEEEECC--CCCCHHHHHHHHHHcCCC-EEEEcccccc
Confidence 35677764 444444 4556667889999999994 467777787788887765 5777665444
No 99
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=46.27 E-value=1e+02 Score=29.29 Aligned_cols=60 Identities=15% Similarity=0.189 Sum_probs=39.1
Q ss_pred CceEEEeecCCcchHHHHHHHHHHHHHCCCeEEEeCCCcccchhHHHHHHHHcCCccceEEcC
Q psy5979 48 RSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQVTGGIVLTA 110 (499)
Q Consensus 48 ~~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~g~~pTP~~~fav~~~~~~gGI~ITa 110 (499)
..+|+++.=....=..=++.++.-|.++|++|++++ --+|..-+--++.+.+++ -|.+++
T Consensus 88 ~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG--~~vp~e~~v~~~~~~~~~-~V~lS~ 147 (213)
T cd02069 88 KGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLG--VMVPIEKILEAAKEHKAD-IIGLSG 147 (213)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECC--CCCCHHHHHHHHHHcCCC-EEEEcc
Confidence 467888753333323334556667889999999993 258888887777777654 344544
No 100
>PRK14315 glmM phosphoglucosamine mutase; Provisional
Probab=45.95 E-value=17 Score=38.71 Aligned_cols=32 Identities=28% Similarity=0.397 Sum_probs=26.0
Q ss_pred chhhHHHHHHHhhcCCCC-C---CeEEEeCCccccc
Q psy5979 3 YTENFIQSILTALGDKLK-G---SVLVVGGDGRYFG 34 (499)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~ 34 (499)
+|.+|+..|+.||++-++ + .+|++|+|+|..+
T Consensus 20 lt~e~~~~lg~a~g~~l~~~~~~~~VvVg~D~R~ss 55 (448)
T PRK14315 20 MTAELALRVGQAAGLYFRRGDHRHRVVIGKDTRLSG 55 (448)
T ss_pred CCHHHHHHHHHHHHHhHhhcCCCceEEEEeCCCCCH
Confidence 899999999999875543 2 3799999999944
No 101
>PRK14314 glmM phosphoglucosamine mutase; Provisional
Probab=45.80 E-value=17 Score=38.75 Aligned_cols=63 Identities=16% Similarity=0.053 Sum_probs=39.9
Q ss_pred chhhHHHHHHHhhcCCCC----CCeEEEeCCccccc---chhhHHHHHhhCCCceEEEeecCCcchHHHHHHHH
Q psy5979 3 YTENFIQSILTALGDKLK----GSVLVVGGDGRYFG---DVAVDKIIKISGIRSVLVVGGDGRYFGDVAVDKII 69 (499)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~---~~a~~~~~~~~~~~~~VvVg~D~R~~s~~~a~a~a 69 (499)
+|..|+..|+.||.+-++ ..+|++|+|+|+.+ ..|+.+.+...| -.|+.- .-...|++..++.
T Consensus 20 lt~e~~~~l~~a~~~~l~~~~~~~~VvVg~D~R~~s~~l~~a~~~gL~s~G--v~V~~~--g~~ptP~~~~a~~ 89 (450)
T PRK14314 20 MTAEMALQLGRAAAYVFRNGSGRHRVVIGKDTRLSGYMFENALIAGLCSMG--VDVLLV--GPLPTPGIAFITR 89 (450)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCcChHHHHHHHHHHHHHCC--CeEEEe--cccCCHHHHHHHH
Confidence 899999999999864443 23799999999955 244444444333 233333 2445566666554
No 102
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=44.82 E-value=63 Score=28.76 Aligned_cols=69 Identities=14% Similarity=0.205 Sum_probs=42.5
Q ss_pred EEEEcCCCCC--ChHHHHHHHHHhcCCCcceeeecccCCCCCCCCCCCCcccHHHHHHHHHhCCCcEEEeeCCCCCeeEE
Q psy5979 214 KLLINAMHGV--TGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDPNLTYAADLVQAMQAGDFDLGAAFDGDGDRNMV 291 (499)
Q Consensus 214 kVvvD~~~G~--~~~~~~~il~~~lG~~~~~~v~~~~d~~F~~~~p~P~~~~l~~l~~~v~~~~adlgia~D~DgDRl~v 291 (499)
||++-+-|+. -...+.+.| ++.|++++. +- ++ +..-+.....+.+.|.+..+|.||.++|.|==+.+
T Consensus 2 kI~igsDhaG~~lK~~l~~~L-~~~g~eV~D-~G--~~-------~~dypd~a~~va~~V~~~e~~~GIliCGtGiG~si 70 (141)
T PRK12613 2 AIILGADAHGNALKELIKSFL-QEEGYDIID-VT--DI-------NSDFIDNTLAVAKAVNEAEGRLGIMVDAYGAGPFM 70 (141)
T ss_pred EEEEEeCcchHHHHHHHHHHH-HHCCCEEEE-cC--CC-------CCChHHHHHHHHHHHHcCCCceEEEEcCCCHhHhh
Confidence 6777777753 123455566 788987642 22 11 11113445677888888889999998888765544
Q ss_pred Ec
Q psy5979 292 LG 293 (499)
Q Consensus 292 vd 293 (499)
.-
T Consensus 71 aA 72 (141)
T PRK12613 71 VA 72 (141)
T ss_pred hh
Confidence 43
No 103
>PLN02371 phosphoglucosamine mutase family protein
Probab=43.97 E-value=16 Score=40.49 Aligned_cols=42 Identities=26% Similarity=0.177 Sum_probs=30.3
Q ss_pred CchhhHHHHHHHhhcCCCC---------CCeEEEeCCccccc---chhhHHHHH
Q psy5979 2 HYTENFIQSILTALGDKLK---------GSVLVVGGDGRYFG---DVAVDKIIK 43 (499)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~---~~a~~~~~~ 43 (499)
.+|..|+..|+.||.+-++ +++|+||+|+|+.+ +.|.++.+.
T Consensus 87 ~lTpe~v~~ig~A~a~~l~~~~~~~~~~~~~VvVG~D~R~sS~~l~~a~a~gL~ 140 (583)
T PLN02371 87 TLTPPAVEAIGAAFAEWLLEKKKADGSGELRVSVGRDPRISGPRLADAVFAGLA 140 (583)
T ss_pred CCCHHHHHHHHHHHHHHHHhhcccccCCCCeEEEEeCCCCChHHHHHHHHHHHH
Confidence 6899999999999864332 25799999999965 234444444
No 104
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=43.87 E-value=61 Score=28.37 Aligned_cols=45 Identities=18% Similarity=0.113 Sum_probs=27.9
Q ss_pred eecCCcchHHHHHHHHHHHHHCCCeEEEeCCCcccchhHHHHHHHHcCCc
Q psy5979 54 GGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQVT 103 (499)
Q Consensus 54 g~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~g~~pTP~~~fav~~~~~~ 103 (499)
|-|.+.-+. +.++..|.++|++|++++ ..+|...+-=++.+.+++
T Consensus 11 g~D~Hd~g~---~iv~~~l~~~GfeVi~lg--~~~s~e~~v~aa~e~~ad 55 (132)
T TIGR00640 11 GQDGHDRGA---KVIATAYADLGFDVDVGP--LFQTPEEIARQAVEADVH 55 (132)
T ss_pred CCCccHHHH---HHHHHHHHhCCcEEEECC--CCCCHHHHHHHHHHcCCC
Confidence 456665554 455566889999999982 344444454455555554
No 105
>cd05801 PGM_like3 This bacterial PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=42.83 E-value=37 Score=37.03 Aligned_cols=66 Identities=18% Similarity=0.210 Sum_probs=42.7
Q ss_pred CchhhHHHHHHHhhcCCC----CCCeEEEeCCcccccchh---hHHHHHhhCCCceEEEeec-CCcchHHHHHHHH
Q psy5979 2 HYTENFIQSILTALGDKL----KGSVLVVGGDGRYFGDVA---VDKIIKISGIRSVLVVGGD-GRYFGDVAVDKII 69 (499)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~a---~~~~~~~~~~~~~VvVg~D-~R~~s~~~a~a~a 69 (499)
.+|+.+++.|+.|+.+-+ .+.+|+||+|+|+.|... ..+.+.. .+-.|++.-| .....+++..++.
T Consensus 36 ~lt~~~v~~i~~a~~~~l~~~~~~~~VvVg~D~R~~S~~~~~~~~~gL~s--~Gi~V~~~~~~g~~pTP~~~~av~ 109 (522)
T cd05801 36 SFNEAHILAISQAICDYRKSQGITGPLFLGKDTHALSEPAFISALEVLAA--NGVEVIIQQNDGYTPTPVISHAIL 109 (522)
T ss_pred chhHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCCcCCHHHHHHHHHHHHH--CCCEEEEeCCCCCCCchHHHHHHH
Confidence 389999999999885332 124699999999977422 2233331 4556776555 3455577777664
No 106
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=42.64 E-value=67 Score=28.08 Aligned_cols=50 Identities=12% Similarity=0.221 Sum_probs=31.6
Q ss_pred EeecCCcchHHHHHHHHHHHHHCCCeEEEeCCCcc-cchhHHHHHHHHcCCccceEEc
Q psy5979 53 VGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGI-LSTPAVSALIRKHQVTGGIVLT 109 (499)
Q Consensus 53 Vg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~g~-~pTP~~~fav~~~~~~gGI~IT 109 (499)
|+-|.+.-+. +.++..|.++|++|+++ |. +|...+-=++.+.+++ -|.++
T Consensus 7 v~gD~HdiGk---niv~~~L~~~GfeVidL---G~~v~~e~~v~aa~~~~ad-iVglS 57 (128)
T cd02072 7 IGSDCHAVGN---KILDHAFTEAGFNVVNL---GVLSPQEEFIDAAIETDAD-AILVS 57 (128)
T ss_pred eCCchhHHHH---HHHHHHHHHCCCEEEEC---CCCCCHHHHHHHHHHcCCC-EEEEe
Confidence 3455555444 56777889999999998 64 4544555556665554 34443
No 107
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=42.56 E-value=65 Score=28.76 Aligned_cols=63 Identities=22% Similarity=0.263 Sum_probs=35.5
Q ss_pred EEEcCCCCC--ChHHHHHHHHHhcCCCcceeeecccCCCCCCCCCCCC--cccHHHHHHHHHhCCCcEEEeeCCCCC
Q psy5979 215 LLINAMHGV--TGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDPN--LTYAADLVQAMQAGDFDLGAAFDGDGD 287 (499)
Q Consensus 215 VvvD~~~G~--~~~~~~~il~~~lG~~~~~~v~~~~d~~F~~~~p~P~--~~~l~~l~~~v~~~~adlgia~D~DgD 287 (499)
|++-+-|.. -...+.+.| ++.|.+++. +-+. ..+|. +.....+.+.|.+..+|.||.++|.|=
T Consensus 2 I~igsDhaG~~lK~~l~~~L-~~~g~eV~D-~G~~--------~~~~~dYpd~a~~va~~V~~~~~~~GIliCGtGi 68 (143)
T TIGR01120 2 IAIGSDHAGFILKEEIKAFL-VERGVKVID-KGTW--------SSERTDYPHYAKQVALAVAGGEVDGGILICGTGI 68 (143)
T ss_pred EEEEeCcchHHHHHHHHHHH-HHCCCEEEE-eCCC--------CCCCCCHHHHHHHHHHHHHCCCCceEEEEcCCcH
Confidence 555555642 123455566 888987542 2211 11121 234456677777777888887777764
No 108
>PRK12615 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=42.38 E-value=79 Score=29.11 Aligned_cols=66 Identities=20% Similarity=0.219 Sum_probs=37.7
Q ss_pred EEEEcCCCCC--ChHHHHHHHHHhcCCCcceeeecccCCCCCCCCCCCCcccHHHHHHHHHhCCCcEEEeeCCCCC
Q psy5979 214 KLLINAMHGV--TGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDPNLTYAADLVQAMQAGDFDLGAAFDGDGD 287 (499)
Q Consensus 214 kVvvD~~~G~--~~~~~~~il~~~lG~~~~~~v~~~~d~~F~~~~p~P~~~~l~~l~~~v~~~~adlgia~D~DgD 287 (499)
||++-+-|+. -...+.+.| ++.|++|+ +.-++.. .|..-+.....+.+.|.+..+|.||.+.+.|=
T Consensus 2 kI~igsDhaG~~lK~~l~~~L-~~~G~eV~---D~G~~~~----~~~dYpd~a~~va~~V~~g~~d~GIliCGTGi 69 (171)
T PRK12615 2 KIAIGCDHIVTNEKMAVSDFL-KSKGYDVI---DCGTYDH----TRTHYPIFGKKVGEAVVNGQADLGVCICGTGV 69 (171)
T ss_pred EEEEEeCchhHHHHHHHHHHH-HHCCCEEE---EcCCCCC----CCCChHHHHHHHHHHHHcCCCCEEEEEcCCcH
Confidence 6777777753 123455556 77888754 2211110 01111344566777787778888887777664
No 109
>TIGR01119 lacB galactose-6-phosphate isomerase, LacB subunit. This family contains four members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=42.03 E-value=73 Score=29.35 Aligned_cols=66 Identities=21% Similarity=0.242 Sum_probs=37.8
Q ss_pred EEEEcCCCCC--ChHHHHHHHHHhcCCCcceeeecccCCCCCCCCCCCCcccHHHHHHHHHhCCCcEEEeeCCCCC
Q psy5979 214 KLLINAMHGV--TGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDPNLTYAADLVQAMQAGDFDLGAAFDGDGD 287 (499)
Q Consensus 214 kVvvD~~~G~--~~~~~~~il~~~lG~~~~~~v~~~~d~~F~~~~p~P~~~~l~~l~~~v~~~~adlgia~D~DgD 287 (499)
||++-+-|.. -...+.+.| ++.|.+|+. +- ++.. .|..-++....+.+.|.+..+|.||.+++.|=
T Consensus 2 kI~igsDhaG~~lK~~l~~~L-~~~G~eV~D-~G--~~~~----~~~dYpd~a~~va~~V~~g~~~~GIliCGTGi 69 (171)
T TIGR01119 2 KIAIGCDHIVTDVKMEVSEFL-KSKGYEVLD-VG--TYDF----TRTHYPIFGKKVGEAVVSGEADLGVCICGTGV 69 (171)
T ss_pred EEEEEeCCchHHHHHHHHHHH-HHCCCEEEE-eC--CCCC----CCCChHHHHHHHHHHHHcCCCCEEEEEcCCcH
Confidence 6777777752 123445556 778887642 22 1110 01112344566777887777888888777764
No 110
>PTZ00215 ribose 5-phosphate isomerase; Provisional
Probab=41.96 E-value=86 Score=28.27 Aligned_cols=67 Identities=13% Similarity=0.149 Sum_probs=38.9
Q ss_pred cEEEEcCCCCC--ChHHHHHHHHHh--cCCCcceeeecccCCCCCCCCCCCCcccHHHHHHHHHhCCCcEEEeeCCCCC
Q psy5979 213 FKLLINAMHGV--TGPYVKKIFLEE--LGAQPDNAVNTTPLPDFGGHHPDPNLTYAADLVQAMQAGDFDLGAAFDGDGD 287 (499)
Q Consensus 213 lkVvvD~~~G~--~~~~~~~il~~~--lG~~~~~~v~~~~d~~F~~~~p~P~~~~l~~l~~~v~~~~adlgia~D~DgD 287 (499)
+||++-+-|+. -...+.+.| ++ .|++|+. + .++.. .|-.-+.....+.+.|.+..+|.||.++|.|=
T Consensus 3 mkI~igsDhaG~~lK~~l~~~L-~~~~~g~eV~D-~--G~~~~----~~~dYp~~a~~va~~V~~~~~~~GIliCGtGi 73 (151)
T PTZ00215 3 KKVAIGSDHAGFDLKNEIIDYI-KNKGKEYKIED-M--GTYTA----ESVDYPDFAEKVCEEVLKGEADTGILVCGSGI 73 (151)
T ss_pred cEEEEEeCCchHHHHHHHHHHH-HhccCCCEEEE-c--CCCCC----CCCCHHHHHHHHHHHHhcCCCcEEEEEcCCcH
Confidence 57888888863 123445556 77 8887542 2 12110 01111234556777787777888887777664
No 111
>PRK14320 glmM phosphoglucosamine mutase; Provisional
Probab=41.91 E-value=21 Score=37.97 Aligned_cols=33 Identities=30% Similarity=0.446 Sum_probs=26.5
Q ss_pred CchhhHHHHHHHhhcCCCC----CCeEEEeCCccccc
Q psy5979 2 HYTENFIQSILTALGDKLK----GSVLVVGGDGRYFG 34 (499)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 34 (499)
.+|..|+..|+.||++-++ +..|++|+|+|..+
T Consensus 18 ~ltpe~~~~lg~a~g~~l~~~~~~~~VvVg~D~R~ss 54 (443)
T PRK14320 18 TITVEFTQKLGNAVGSLINQKNYPKFVIVGQDTRSSG 54 (443)
T ss_pred CCCHHHHHHHHHHHHHhHhhCCCCCeEEEEECCCcCH
Confidence 3899999999999875443 25699999999965
No 112
>TIGR02133 RPI_actino ribose 5-phosphate isomerase. This family is a member of the RpiB/LacA/LacB subfamily (TIGR00689) but lies outside the RpiB equivalog (TIGR01120) which is also a member of that subfamily. Ribose 5-phosphate isomerase is an essential enzyme of the pentose phosphate pathway; a pathway that appears to be present in the actinobacteria. The only candidates for ribose 5-phosphate isomerase in the Actinobacteria are members of this family.
Probab=41.44 E-value=1.1e+02 Score=27.39 Aligned_cols=76 Identities=13% Similarity=0.183 Sum_probs=47.7
Q ss_pred cEEEEcCCCCC--ChHHHHHHHHHhcCCCcceeeecccCCCCCCCCCCCCcccHHHHHHHHHhCCCcEEEeeCCCCCeeE
Q psy5979 213 FKLLINAMHGV--TGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDPNLTYAADLVQAMQAGDFDLGAAFDGDGDRNM 290 (499)
Q Consensus 213 lkVvvD~~~G~--~~~~~~~il~~~lG~~~~~~v~~~~d~~F~~~~p~P~~~~l~~l~~~v~~~~adlgia~D~DgDRl~ 290 (499)
+||++.+-|.. -...+.+.| ++.|++++- +. +. ....+.+-+.....+.+.|.+..+|.||.+.|.|-=+.
T Consensus 1 MkI~igsDhaG~~lK~~l~~~L-~~~g~eV~D-~G--~~---~~~~~~dYpd~a~~va~~V~~~~~~~GIliCGtGiG~s 73 (148)
T TIGR02133 1 MRVVLGHDHAGFEYKEALWLDL-AAHEPEVCD-VG--VY---DADDDDDYPCFCIAAAEAVARDAADLGIVIGGSGNGEA 73 (148)
T ss_pred CEEEEEeCchhHHHHHHHHHHH-HHCCCEEEE-CC--CC---CCCCCCCchHHHHHHHHHHhcCCCceEEEEcCCChhhe
Confidence 36788887753 123455556 778887542 22 11 00112222445677888899999999999999998777
Q ss_pred EEccC
Q psy5979 291 VLGKK 295 (499)
Q Consensus 291 vvd~~ 295 (499)
+.-++
T Consensus 74 iaANK 78 (148)
T TIGR02133 74 IAANK 78 (148)
T ss_pred eeecc
Confidence 76553
No 113
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=41.36 E-value=88 Score=27.91 Aligned_cols=41 Identities=32% Similarity=0.508 Sum_probs=30.2
Q ss_pred CCCceEEE---eecCCcchHHHHHHHHHHHHHCCCeEEEeCCCcccchhH
Q psy5979 46 GIRSVLVV---GGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPA 92 (499)
Q Consensus 46 ~~~~~VvV---g~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~g~~pTP~ 92 (499)
+..++|+| |-|.+.-+. +.+++.|++.|++|+.. |...||.
T Consensus 10 g~rprvlvak~GlDgHd~ga---kvia~~l~d~GfeVi~~---g~~~tp~ 53 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGA---KVIARALADAGFEVINL---GLFQTPE 53 (143)
T ss_pred CCCceEEEeccCccccccch---HHHHHHHHhCCceEEec---CCcCCHH
Confidence 46677776 466665553 45666789999999997 8888886
No 114
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=40.57 E-value=1.5e+02 Score=25.19 Aligned_cols=44 Identities=16% Similarity=0.141 Sum_probs=28.6
Q ss_pred ecCCcchHHHHHHHHHHHHHCCCeEEEeCCCcccchhHHHHHHHHcCCc
Q psy5979 55 GDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQVT 103 (499)
Q Consensus 55 ~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~g~~pTP~~~fav~~~~~~ 103 (499)
-|.+.-+..+ ++.-|...|++|++++ ..+|+..+--++.+.+++
T Consensus 9 gd~H~lG~~~---~~~~l~~~G~~vi~lG--~~vp~e~~~~~a~~~~~d 52 (122)
T cd02071 9 LDGHDRGAKV---IARALRDAGFEVIYTG--LRQTPEEIVEAAIQEDVD 52 (122)
T ss_pred CChhHHHHHH---HHHHHHHCCCEEEECC--CCCCHHHHHHHHHHcCCC
Confidence 4555444433 4445789999999983 457777776666666554
No 115
>PF02502 LacAB_rpiB: Ribose/Galactose Isomerase; InterPro: IPR003500 This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB). Galactose-6-phosphate isomerase (5.3.1.26 from EC) is a heteromultimeric protein consisting of subunits LacA and LacB, and catalyses the conversion of D-galactose 6-phosphate to D-tagatose and 6-phosphate in the tagatose 6-phosphate pathway of lactose catabolism []. Galactose-6-phosphate isomerase is induced by galactose or lactose. This entry represents the LacB subunit. Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology [].; GO: 0005975 carbohydrate metabolic process; PDB: 3HEE_A 3HE8_A 3PH3_B 3PH4_B 3ONO_A 4EM8_B 3S5P_B 1O1X_A 2BES_D 2VVP_D ....
Probab=39.22 E-value=41 Score=29.93 Aligned_cols=66 Identities=24% Similarity=0.298 Sum_probs=36.3
Q ss_pred EEEEcCCCCC--ChHHHHHHHHHhcCCCcceeeecccCCCCCCCCCCCCcccHHHHHHHHHhCCCcEEEeeCCCCC
Q psy5979 214 KLLINAMHGV--TGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDPNLTYAADLVQAMQAGDFDLGAAFDGDGD 287 (499)
Q Consensus 214 kVvvD~~~G~--~~~~~~~il~~~lG~~~~~~v~~~~d~~F~~~~p~P~~~~l~~l~~~v~~~~adlgia~D~DgD 287 (499)
||++-+-|.. -...+.+.| ++.|.+++. +-... +. +..-++....+.+.|.+..+|.||.+++.|-
T Consensus 1 KI~igsDh~g~~lK~~i~~~L-~~~g~eV~D-~G~~~-~~-----~~dy~~~a~~va~~V~~~~~d~GIliCgtGi 68 (140)
T PF02502_consen 1 KIAIGSDHAGFELKEAIKEYL-EEKGYEVID-FGTYS-ED-----SVDYPDFAEKVAEAVASGEADRGILICGTGI 68 (140)
T ss_dssp EEEEEE-GGGHHHHHHHHHHH-HHTTEEEEE-ESESS-TS-----T--HHHHHHHHHHHHHTTSSSEEEEEESSSH
T ss_pred CEEEEeCHHHHHHHHHHHHHH-HHCCCEEEE-eCCCC-CC-----CCCHHHHHHHHHHHHHcccCCeEEEEcCCCh
Confidence 5666666642 223555666 788887542 22111 00 1111345567778888878887777777664
No 116
>PRK04017 hypothetical protein; Provisional
Probab=39.19 E-value=1.1e+02 Score=26.87 Aligned_cols=34 Identities=12% Similarity=0.035 Sum_probs=30.6
Q ss_pred CCceEEEeecCCcchHHHHHHHHHHHHHCCCeEE
Q psy5979 47 IRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKL 80 (499)
Q Consensus 47 ~~~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~ 80 (499)
....|+|-.|.-..++.+++-+.+-|...|++|-
T Consensus 64 ~~r~VIILTD~D~~GekIr~~l~~~l~~~G~~vd 97 (132)
T PRK04017 64 RGKEVIILTDFDRKGEELAKKLSEYLQGYGIKVD 97 (132)
T ss_pred cCCeEEEEECCCcchHHHHHHHHHHHHhCCCCcc
Confidence 5678999999999999999999999999999863
No 117
>PF11576 DUF3236: Protein of unknown function (DUF3236); InterPro: IPR012019 This family of proteins with unknown function appears to be restricted to Methanobacteria. ; PDB: 3BRC_B.
Probab=36.95 E-value=50 Score=29.26 Aligned_cols=82 Identities=13% Similarity=0.164 Sum_probs=41.0
Q ss_pred cEEEEcCCCCCChHHHHHHHHHhcCCCcceeeecccCCCCCCCCCCCCc-ccHHHHHHHHHhCCCcEEEee-----CCCC
Q psy5979 213 FKLLINAMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDPNL-TYAADLVQAMQAGDFDLGAAF-----DGDG 286 (499)
Q Consensus 213 lkVvvD~~~G~~~~~~~~il~~~lG~~~~~~v~~~~d~~F~~~~p~P~~-~~l~~l~~~v~~~~adlgia~-----D~Dg 286 (499)
-||||-..|+---.++..+| .+++...+..++ +|+...+-+. +.+..-.-.+.-.+||+.||= =|.|
T Consensus 36 kkIvV~t~N~kKf~vi~~il-~~~~~~~i~~l~------i~Tn~aDlTrmPA~~K~LmavD~~dADlvIARGRLGvPGSG 108 (154)
T PF11576_consen 36 KKIVVATNNEKKFKVINDIL-SKFNLPEIEMLD------IPTNSADLTRMPALSKALMAVDISDADLVIARGRLGVPGSG 108 (154)
T ss_dssp S-EEE----HHHHHHHHHHH-HHTT----EE--------S--GGGGGSSSHHHHHHHHHHHHH--SEEEEEEE-SSTTS-
T ss_pred ceEEEecCCchHhHHHHHHH-HHhcCCccceee------ccCcchhcccCcHHHhHHHheeccCCcEEEEcccccCCCCc
Confidence 47888888887677899999 888865432222 1111112111 122222223566799999984 5788
Q ss_pred CeeEEEccCceEeCC
Q psy5979 287 DRNMVLGKKAFFVNP 301 (499)
Q Consensus 287 DRl~vvd~~G~~l~~ 301 (499)
.=+.++|.+|++++.
T Consensus 109 SmlvimD~kGRiLta 123 (154)
T PF11576_consen 109 SMLVIMDSKGRILTA 123 (154)
T ss_dssp EEEEEEETTS-EEEE
T ss_pred cEEEEEcCCCcEEee
Confidence 878889999998754
No 118
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=36.81 E-value=92 Score=27.47 Aligned_cols=50 Identities=12% Similarity=0.223 Sum_probs=32.6
Q ss_pred EeecCCcchHHHHHHHHHHHHHCCCeEEEeCCCcc-cchhHHHHHHHHcCCccceEEc
Q psy5979 53 VGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGI-LSTPAVSALIRKHQVTGGIVLT 109 (499)
Q Consensus 53 Vg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~g~-~pTP~~~fav~~~~~~gGI~IT 109 (499)
|+-|.+.-+. +.++..|.++|++|+++ |. +|...+-=++.+.+++ -|.++
T Consensus 9 v~~D~HdiGk---~iv~~~l~~~GfeVi~L---G~~v~~e~~v~aa~~~~ad-iVglS 59 (134)
T TIGR01501 9 IGSDCHAVGN---KILDHAFTNAGFNVVNL---GVLSPQEEFIKAAIETKAD-AILVS 59 (134)
T ss_pred ecCChhhHhH---HHHHHHHHHCCCEEEEC---CCCCCHHHHHHHHHHcCCC-EEEEe
Confidence 3456666655 56666789999999998 64 4444455566666654 34443
No 119
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=34.87 E-value=4.9e+02 Score=26.25 Aligned_cols=112 Identities=18% Similarity=0.146 Sum_probs=61.2
Q ss_pred hhHHHHHHHhhcCCCCCCeEEEeCCcccccchhhHHHHHhhCCCceEEEeecCCcchHHHHHHHHHHHHHCCCeEEEeC-
Q psy5979 5 ENFIQSILTALGDKLKGSVLVVGGDGRYFGDVAVDKIIKISGIRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVG- 83 (499)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~- 83 (499)
..|-++|+.-++.. .++-|+++..+......+...++. .+..|+|.. ++-..+ .......|+++..+.
T Consensus 66 ~~lr~~ia~~~~~~-~~~~I~~t~G~~~~i~~~~~~~~~---~gd~vlv~~---P~y~~~----~~~~~~~g~~~~~i~~ 134 (356)
T PRK04870 66 AALKAALRAAMGVP-AGADVLLGNGSDELIQLLALACAK---PGATVLAPE---PGFVMY----RMSAKLAGLEFVGVPL 134 (356)
T ss_pred HHHHHHHHHHhCcC-CCCcEEEcCCHHHHHHHHHHHhcC---CCCEEEECC---CCHHHH----HHHHHHcCCEEEEecC
Confidence 45777787766532 234566766665544333333333 567788763 222222 234567899888763
Q ss_pred CCcccch-hHHHHHHHHcCCccceEEcCCCCCCCCCCCceeEEEcCCCCCCChhHHHHHH
Q psy5979 84 QNGILST-PAVSALIRKHQVTGGIVLTASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIY 142 (499)
Q Consensus 84 ~~g~~pT-P~~~fav~~~~~~gGI~ITaSHNP~~~~~~nGiK~~~~~G~~~~~~~~~~Ie 142 (499)
+.+..++ ..+.-++...+ ...|+|+-.||| .|..++.+..++|-
T Consensus 135 ~~~~~~d~~~l~~~~~~~~-~~~v~l~~p~NP--------------tG~~~~~~~~~~i~ 179 (356)
T PRK04870 135 TADFTLDLPAMLAAIAEHR-PALVFLAYPNNP--------------TGNLFDDADVERII 179 (356)
T ss_pred CCCCCCCHHHHHHHhhcCC-CCEEEEcCCCCC--------------CCCCCCHHHHHHHH
Confidence 1111222 33444443323 346777777888 58888876555544
No 120
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=34.70 E-value=1.9e+02 Score=27.10 Aligned_cols=57 Identities=19% Similarity=0.313 Sum_probs=36.7
Q ss_pred CceEEEee---cCCcchHHHHHHHHHHHHHCCCeEEEeCCCcccchhHHHHHHHHcCCccceEEcC
Q psy5979 48 RSVLVVGG---DGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQVTGGIVLTA 110 (499)
Q Consensus 48 ~~~VvVg~---D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~g~~pTP~~~fav~~~~~~gGI~ITa 110 (499)
..+|+++. |.+.-+. +.++..|..+|++|++++ --+|..-+.-++.+.+.+ -|.++.
T Consensus 82 ~~~vl~~~~~gd~H~lG~---~~v~~~l~~~G~~vi~lG--~~~p~~~l~~~~~~~~~d-~v~lS~ 141 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGK---NLVATMLEANGFEVIDLG--RDVPPEEFVEAVKEHKPD-ILGLSA 141 (201)
T ss_pred CCeEEEEecCCccchHHH---HHHHHHHHHCCCEEEECC--CCCCHHHHHHHHHHcCCC-EEEEec
Confidence 45677663 5555554 445567889999999983 246777777777776543 344444
No 121
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=34.68 E-value=63 Score=33.49 Aligned_cols=56 Identities=18% Similarity=0.213 Sum_probs=39.2
Q ss_pred CCCCCeEEEeCCcccccchhhHHHHHhhCCC-ceEEEeecCCcchHHHHHHHHHHHHHCCCeE
Q psy5979 18 KLKGSVLVVGGDGRYFGDVAVDKIIKISGIR-SVLVVGGDGRYFGDVAVDKIIKISAANGVAK 79 (499)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V 79 (499)
|++|+++.+..---+-. -..+++ .+ ++|||+.|-.++++.++.-+.+-|.++|++|
T Consensus 42 gi~g~~i~~s~~p~~~c---ad~ii~---~gi~rVVi~~D~d~~G~~~~~~~~~~L~~aGi~V 98 (360)
T PRK14719 42 KINANFITVSNTPVFQI---ADDLIA---ENISEVILLTDFDRAGRVYAKNIMEEFQSRGIKV 98 (360)
T ss_pred CCCCcEEEEeCCchHHH---HHHHHH---cCCCEEEEEECCCCCCCccchHHHHHHHHCCCEE
Confidence 45566666643222211 122333 34 6899999999999999999999999999999
No 122
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=34.17 E-value=3.8e+02 Score=26.44 Aligned_cols=64 Identities=17% Similarity=0.238 Sum_probs=44.2
Q ss_pred HHHhhcCCC--CCCeEEEeCCcccccchhhHHHHHhhCCCceEEEeecCCcchHHHHHHHHHHHHHCCCeEEEeC
Q psy5979 11 ILTALGDKL--KGSVLVVGGDGRYFGDVAVDKIIKISGIRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVG 83 (499)
Q Consensus 11 ~~~~~~~~~--~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~ 83 (499)
|..|...+. +|.+|+....++| +.|.+.+-++.+....|++..+.. ..-..-+...|.+|+.++
T Consensus 41 l~~a~~~g~~~~~~~vv~~SsGN~--g~alA~~a~~~G~~~~i~vp~~~~-------~~k~~~~~~~Ga~v~~~~ 106 (291)
T cd01561 41 IEDAEKRGLLKPGTTIIEPTSGNT--GIGLAMVAAAKGYRFIIVMPETMS-------EEKRKLLRALGAEVILTP 106 (291)
T ss_pred HHHHHHcCCCCCCCEEEEeCCChH--HHHHHHHHHHcCCeEEEEECCCCC-------HHHHHHHHHcCCEEEEeC
Confidence 335555554 5788999999998 556666777777888888877643 122234568899999873
No 123
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=34.16 E-value=97 Score=27.69 Aligned_cols=53 Identities=19% Similarity=0.174 Sum_probs=30.4
Q ss_pred HHHHHHHHhcCCCcceeeecccCCCCCCCCCCCCcccHHHHHHHHHhCCCcEEEeeCCCCC
Q psy5979 227 YVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDPNLTYAADLVQAMQAGDFDLGAAFDGDGD 287 (499)
Q Consensus 227 ~~~~il~~~lG~~~~~~v~~~~d~~F~~~~p~P~~~~l~~l~~~v~~~~adlgia~D~DgD 287 (499)
.+.+.| ++.|++++. +-+..+ .|..-++....+.+.|.+..+|.||.++|.|=
T Consensus 15 ~l~~~L-~~~g~eV~D-~G~~~~------~~~dYpd~a~~va~~V~~g~~~~GIliCGtGi 67 (144)
T TIGR00689 15 EIIEHL-KQKGHEVID-CGTLYD------ERVDYPDYAKLVADKVVAGEVSLGILICGTGI 67 (144)
T ss_pred HHHHHH-HHCCCEEEE-cCCCCC------CCCChHHHHHHHHHHHHcCCCceEEEEcCCcH
Confidence 455667 888987542 221100 11112344566777787777888877777664
No 124
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=33.64 E-value=1.8e+02 Score=22.81 Aligned_cols=59 Identities=15% Similarity=0.377 Sum_probs=35.8
Q ss_pred CCcEEEEcCCCCCChHHHHHHHHHhcCCCcceeeecccCCCCCCCCCCCCcccHHHHHHHHHhCCCcEEEeeCC
Q psy5979 211 PPFKLLINAMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDPNLTYAADLVQAMQAGDFDLGAAFDG 284 (499)
Q Consensus 211 ~~lkVvvD~~~G~~~~~~~~il~~~lG~~~~~~v~~~~d~~F~~~~p~P~~~~l~~l~~~v~~~~adlgia~D~ 284 (499)
.++.++++..-. +.++..++ +.+|++++. ... +.++ ...+.++.+.++ .+.+++|.-|+
T Consensus 10 ~~~~~lvS~s~D--Ge~ia~~~-~~~G~~~iR---GSs--~rgg------~~Alr~~~~~lk-~G~~~~itpDG 68 (74)
T PF04028_consen 10 RKIAALVSRSRD--GELIARVL-ERFGFRTIR---GSS--SRGG------ARALREMLRALK-EGYSIAITPDG 68 (74)
T ss_pred CCEEEEEccCcC--HHHHHHHH-HHcCCCeEE---eCC--CCcH------HHHHHHHHHHHH-CCCeEEEeCCC
Confidence 356666665543 68999999 999998652 211 1110 234445555555 67788777765
No 125
>PF10678 DUF2492: Protein of unknown function (DUF2492); InterPro: IPR019620 This entry describes a family of small cytosolic proteins, about 80 amino acids in length, in which the eight invariant residues include three His residues and two Cys residues. Two pairs of these invariant residues occur in motifs HxH (where x is A or G) and CxH, both of which suggest metal-binding activity. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulphatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulphur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulphatase/maturase systems.
Probab=31.86 E-value=1.6e+02 Score=23.41 Aligned_cols=48 Identities=21% Similarity=0.419 Sum_probs=31.9
Q ss_pred HHHHHH--HHcCCCHHHHHHHHHHHhCCceEeeeccccCCchh--HHHHHHHHHhh
Q psy5979 392 AWLSVV--EHTGKPVEEILKSHWKQYGRNYFTRYDYENCSAAP--CNQMMDELEKK 443 (499)
Q Consensus 392 ~lle~l--a~~~~~L~ell~~lp~~~g~~~~~~~~~~~~~~~~--k~~vm~~l~~~ 443 (499)
.+|+|| ..+..|..+|.+.+-++||.- ..+..|+.+. ..++++-|.++
T Consensus 8 eVL~mmi~~~~~~t~~~L~~ai~~~FG~~----arFhTCSae~m~a~eLv~FL~~r 59 (78)
T PF10678_consen 8 EVLNMMIESGNPYTKEELKAAIIEKFGED----ARFHTCSAEGMTADELVDFLEER 59 (78)
T ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHhCCC----ceEEecCCCCCCHHHHHHHHHHc
Confidence 467888 344567889999999999953 2333577443 45666666654
No 126
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=31.03 E-value=1.7e+02 Score=22.58 Aligned_cols=55 Identities=22% Similarity=0.321 Sum_probs=33.4
Q ss_pred eEEEeCCcccccchhhHHHHHhhCCCceEEEeecCCc---chHHHHHHHHHHHHHCCCeEEE
Q psy5979 23 VLVVGGDGRYFGDVAVDKIIKISGIRSVLVVGGDGRY---FGDVAVDKIIKISAANGVAKLI 81 (499)
Q Consensus 23 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~VvVg~D~R~---~s~~~a~a~a~gL~s~Gi~V~~ 81 (499)
.|++|+. ++|..++..+...+.+-.+ |-+..+. ..+.++..+..-|.+.|++++.
T Consensus 2 vvViGgG---~ig~E~A~~l~~~g~~vtl-i~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~ 59 (80)
T PF00070_consen 2 VVVIGGG---FIGIELAEALAELGKEVTL-IERSDRLLPGFDPDAAKILEEYLRKRGVEVHT 59 (80)
T ss_dssp EEEESSS---HHHHHHHHHHHHTTSEEEE-EESSSSSSTTSSHHHHHHHHHHHHHTTEEEEE
T ss_pred EEEECcC---HHHHHHHHHHHHhCcEEEE-EeccchhhhhcCHHHHHHHHHHHHHCCCEEEe
Confidence 4666554 2566677777665543333 3333333 3577777777777788887764
No 127
>COG0698 RpiB Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]
Probab=30.57 E-value=1.6e+02 Score=26.61 Aligned_cols=65 Identities=22% Similarity=0.269 Sum_probs=36.9
Q ss_pred cEEEEcCCCCCC--hHHHHHHHHHhcCCCcceeeecccCCCCCCCCCCC---CcccHHHHHHHHHhCCCcEEEeeCCCCC
Q psy5979 213 FKLLINAMHGVT--GPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDP---NLTYAADLVQAMQAGDFDLGAAFDGDGD 287 (499)
Q Consensus 213 lkVvvD~~~G~~--~~~~~~il~~~lG~~~~~~v~~~~d~~F~~~~p~P---~~~~l~~l~~~v~~~~adlgia~D~DgD 287 (499)
+||++-|-|... ...+...| ++.|.+++ ++ +...++. -+.....+.+.|...++|+||..+|-|=
T Consensus 1 MkIaig~Dhag~~lK~~I~~~L-k~~g~~v~---D~------G~~~~~~~~dyp~~a~~va~~v~~~~~d~GIliCGTGi 70 (151)
T COG0698 1 MKIAIGSDHAGYELKEIIIDHL-KSKGYEVI---DF------GTYTDEGSVDYPDYAKKVAEAVLNGEADLGILICGTGI 70 (151)
T ss_pred CcEEEEcCcccHHHHHHHHHHH-HHCCCEEE---ec------cccCCCCCcchHHHHHHHHHHHHcCCCCeeEEEecCCh
Confidence 367777777542 23455556 77787754 22 1111111 1233455667777778888888887764
No 128
>TIGR01132 pgm phosphoglucomutase, alpha-D-glucose phosphate-specific. This enzyme interconverts alpha-D-glucose-1-P and alpha-D-glucose-6-P.
Probab=30.44 E-value=30 Score=37.92 Aligned_cols=66 Identities=18% Similarity=0.244 Sum_probs=39.3
Q ss_pred CchhhHHHHHHHhhcCCCC--C--CeEEEeCCccccc---chhhHHHHHhhCCCceEEEeec-CCcchHHHHHHHH
Q psy5979 2 HYTENFIQSILTALGDKLK--G--SVLVVGGDGRYFG---DVAVDKIIKISGIRSVLVVGGD-GRYFGDVAVDKII 69 (499)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~---~~a~~~~~~~~~~~~~VvVg~D-~R~~s~~~a~a~a 69 (499)
.||..++..|+.|+.+-++ | .+|+||+|+|+.+ +.|+.+.+.. .+-.|+.--| .-...+.+..++.
T Consensus 54 ~lt~~~~~~i~~a~a~~~~~~~~~~~VvVG~D~R~sS~~~~~a~a~gL~s--~Gi~V~~~~~~G~~pTP~~~~av~ 127 (543)
T TIGR01132 54 TFNEPHILAIAQAIAEYRAAQGITGPLYIGKDTHALSEPAFISVLEVLAA--NGVEVIVQENNGFTPTPAVSHAIL 127 (543)
T ss_pred ccCHHHHHHHHHHHHHHHHHhCCCCcEEEEeCCCcCCHHHHHHHHHHHHH--CCCEEEEeCCCCcCCchHHHHHHH
Confidence 3899999999988642221 1 3599999999966 2444444442 3445554333 3444566665553
No 129
>TIGR03853 matur_matur probable metal-binding protein. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulfatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulfur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulfatase/maturase systems.
Probab=30.14 E-value=1.9e+02 Score=22.97 Aligned_cols=48 Identities=19% Similarity=0.314 Sum_probs=30.8
Q ss_pred HHHHHHHH--cCCCHHHHHHHHHHHhCCceEeeeccccCCchh--HHHHHHHHHhh
Q psy5979 392 AWLSVVEH--TGKPVEEILKSHWKQYGRNYFTRYDYENCSAAP--CNQMMDELEKK 443 (499)
Q Consensus 392 ~lle~la~--~~~~L~ell~~lp~~~g~~~~~~~~~~~~~~~~--k~~vm~~l~~~ 443 (499)
-+|+||-. +..|-.++.+.|-++||.. ..+-.|+.+. ...+++-|.++
T Consensus 6 eVL~mml~~~~~~t~~~L~~~i~~~FG~~----arFhTCSa~~m~a~~Li~FL~~k 57 (77)
T TIGR03853 6 EVLNLMLASGEPYTRESLKAAIEQKFGED----ARFHTCSAEGMTADELLQFLLKK 57 (77)
T ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHhCCC----ceEeecccccCCHHHHHHHHHHC
Confidence 46788744 4456788999999999952 2333576433 45666666554
No 130
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=29.94 E-value=2.9e+02 Score=23.08 Aligned_cols=51 Identities=16% Similarity=0.279 Sum_probs=29.0
Q ss_pred ecCCcchHHHHHHHHHHHHHCCCeEEEeCCCcccchhHHHHHHHHcCCccceEEcCC
Q psy5979 55 GDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQVTGGIVLTAS 111 (499)
Q Consensus 55 ~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~g~~pTP~~~fav~~~~~~gGI~ITaS 111 (499)
-|.+..+. ..++..|...|++|++++ ..+|..-+-=++.+.+.+ -|.|+.+
T Consensus 9 ~e~H~lG~---~~~~~~l~~~G~~V~~lg--~~~~~~~l~~~~~~~~pd-vV~iS~~ 59 (119)
T cd02067 9 GDGHDIGK---NIVARALRDAGFEVIDLG--VDVPPEEIVEAAKEEDAD-AIGLSGL 59 (119)
T ss_pred CchhhHHH---HHHHHHHHHCCCEEEECC--CCCCHHHHHHHHHHcCCC-EEEEecc
Confidence 45554444 355667889999999983 345544454445554443 3444443
No 131
>PRK08868 flagellar protein FlaG; Provisional
Probab=28.75 E-value=1.5e+02 Score=26.56 Aligned_cols=49 Identities=14% Similarity=0.163 Sum_probs=36.6
Q ss_pred cHHHHHHHHHhCCCcEEEeeCCCCCeeEE--Ecc-Cce---EeCCCcHHHHHHHH
Q psy5979 263 YAADLVQAMQAGDFDLGAAFDGDGDRNMV--LGK-KAF---FVNPSDSLAVLAAH 311 (499)
Q Consensus 263 ~l~~l~~~v~~~~adlgia~D~DgDRl~v--vd~-~G~---~l~~d~~~~lla~~ 311 (499)
.++.|.+.+...+-+|=|..|.|.+|+.| +|. .|. .|.+++++.|..+.
T Consensus 76 aVeklNe~~~~~n~~L~F~vdeetgr~VVkViD~~T~EVIRQIP~Ee~L~la~~l 130 (144)
T PRK08868 76 MVEQMNEFVKSINKGLSFRVDEESGRDVVTIYEASTGDIIRQIPDEEMLEVLRRL 130 (144)
T ss_pred HHHHHHHHHHhhcCceEEEEecCCCCEEEEEEECCCCceeeeCCCHHHHHHHHHH
Confidence 34556666777788999999999999776 565 364 56888888877664
No 132
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=28.17 E-value=1.5e+02 Score=26.18 Aligned_cols=43 Identities=9% Similarity=-0.011 Sum_probs=28.4
Q ss_pred hhhHHHHHhhCCCceEEEeecCCcchHHHHHHHHHHHHHCCC-eEEEe
Q psy5979 36 VAVDKIIKISGIRSVLVVGGDGRYFGDVAVDKIIKISAANGV-AKLIV 82 (499)
Q Consensus 36 ~a~~~~~~~~~~~~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi-~V~~~ 82 (499)
..+.+.+.+.+.+..|||-|+.. ..+..++.-|...|. +|+.+
T Consensus 37 ~~l~~~l~~l~~~~~vVv~c~~g----~~a~~aa~~L~~~G~~~v~~L 80 (145)
T cd01535 37 AQLAQALEKLPAAERYVLTCGSS----LLARFAAADLAALTVKPVFVL 80 (145)
T ss_pred HHHHHHHHhcCCCCCEEEEeCCC----hHHHHHHHHHHHcCCcCeEEe
Confidence 44555666666667777777763 345555667788887 78877
No 133
>PTZ00150 phosphoglucomutase-2-like protein; Provisional
Probab=27.68 E-value=1e+02 Score=34.14 Aligned_cols=47 Identities=17% Similarity=0.126 Sum_probs=28.3
Q ss_pred CCCeEEEeCCccccc---chhhHHHHHhhCCCceEEEeecCCcchHHHHHHHH
Q psy5979 20 KGSVLVVGGDGRYFG---DVAVDKIIKISGIRSVLVVGGDGRYFGDVAVDKII 69 (499)
Q Consensus 20 ~~~~~~~~~~~~~~~---~~a~~~~~~~~~~~~~VvVg~D~R~~s~~~a~a~a 69 (499)
++.+|+||+|+|+.| +.+.++.+.. .+-.|+.--+. ...|++.-++-
T Consensus 88 ~~~~VvVg~D~R~~S~~fa~~~a~~L~a--~Gi~V~~~g~~-~pTP~lsfav~ 137 (584)
T PTZ00150 88 KSRGVVIGYDGRYHSRRFAEITASVFLS--KGFKVYLFGQT-VPTPFVPYAVR 137 (584)
T ss_pred CCCcEEEEeCCCCCcHHHHHHHHHHHHH--CCCEEEEeCCC-CCcHHHHHHHH
Confidence 456899999999976 4555666652 23344443223 34467666654
No 134
>PF13362 Toprim_3: Toprim domain
Probab=27.62 E-value=2.6e+02 Score=22.44 Aligned_cols=60 Identities=18% Similarity=0.215 Sum_probs=44.2
Q ss_pred CCCCCCeEEEeCCcccccchhhHHHHHhhCCCceEEEeecCCcc--hHHHHHHHHHHHHHCCCeEEEe
Q psy5979 17 DKLKGSVLVVGGDGRYFGDVAVDKIIKISGIRSVLVVGGDGRYF--GDVAVDKIIKISAANGVAKLIV 82 (499)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~VvVg~D~R~~--s~~~a~a~a~gL~s~Gi~V~~~ 82 (499)
....+.+++...++..+.. +-. .....+|+|.-|.-.+ ++..+..++..|.+.|+.+..+
T Consensus 16 ~~~~~~~~~a~~~~~nl~~-----~~~-~~~~~~vii~~D~D~~~~G~~~a~~~~~~~~~~g~~~~~~ 77 (96)
T PF13362_consen 16 QQATGVPVVAALGAGNLKN-----VAI-PEPGRRVIIAADNDKANEGQKAAEKAAERLEAAGIAVSIV 77 (96)
T ss_pred HhcCCCeEEEEEChhhhhh-----hcC-CCCCCeEEEEECCCCchhhHHHHHHHHHHHHhCCCeEEEE
Confidence 3445566666666655441 111 1356789999999998 9999999999999999999876
No 135
>COG4373 Mu-like prophage FluMu protein gp28 [General function prediction only]
Probab=27.50 E-value=1.2e+02 Score=31.24 Aligned_cols=16 Identities=6% Similarity=0.025 Sum_probs=13.7
Q ss_pred CCCCeEEEeCCccccc
Q psy5979 19 LKGSVLVVGGDGRYFG 34 (499)
Q Consensus 19 ~~~~~~~~~~~~~~~~ 34 (499)
+++..+-++|+.||+.
T Consensus 10 ~~~~~~fL~YQ~rW~~ 25 (509)
T COG4373 10 AAQRGYFLAYQVRWLN 25 (509)
T ss_pred CCcceeehhhhHHHhc
Confidence 4577799999999998
No 136
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=27.14 E-value=1.1e+02 Score=30.17 Aligned_cols=91 Identities=13% Similarity=0.095 Sum_probs=48.4
Q ss_pred hhhHHHHHhhCCCceEEE-eecCCcc-------hHHHHHHHHHHHHHCCCeEEEeCCCcccchhHHHHHHHHcCCccceE
Q psy5979 36 VAVDKIIKISGIRSVLVV-GGDGRYF-------GDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQVTGGIV 107 (499)
Q Consensus 36 ~a~~~~~~~~~~~~~VvV-g~D~R~~-------s~~~a~a~a~gL~s~Gi~V~~~~~~g~~pTP~~~fav~~~~~~gGI~ 107 (499)
..||+-+++.+.. -+-. .+|.|.+ +..--+.+.+.....|+.+.- .+.-...+.|.. .+ ++ -+.
T Consensus 44 ~~~A~~lk~~g~~-~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~~t----e~~d~~~~~~l~-~~-vd-~~k 115 (266)
T PRK13398 44 VKVAEKLKELGVH-MLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYNLPVVT----EVMDTRDVEEVA-DY-AD-MLQ 115 (266)
T ss_pred HHHHHHHHHcCCC-EEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHcCCCEEE----eeCChhhHHHHH-Hh-CC-EEE
Confidence 4588888876543 2223 3677776 444556677777889998764 234344445553 33 33 455
Q ss_pred EcCC--CCC---CCCCCCceeEEEcCCCCCCCh
Q psy5979 108 LTAS--HNP---GGPDNDFGIKFNTSNGGPAPD 135 (499)
Q Consensus 108 ITaS--HNP---~~~~~~nGiK~~~~~G~~~~~ 135 (499)
|-|. .|. .+ -...|.-+.-++|...+.
T Consensus 116 Iga~~~~n~~LL~~-~a~~gkPV~lk~G~~~s~ 147 (266)
T PRK13398 116 IGSRNMQNFELLKE-VGKTKKPILLKRGMSATL 147 (266)
T ss_pred ECcccccCHHHHHH-HhcCCCcEEEeCCCCCCH
Confidence 5441 221 00 012245566667766444
No 137
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=27.07 E-value=2.4e+02 Score=28.26 Aligned_cols=83 Identities=16% Similarity=0.188 Sum_probs=52.6
Q ss_pred hHHHHHHHhhcCCCCCCeEEEeC---CcccccchhhHHHHHhhCCCceEEEeecCCcchHHHHHHHHHHHHHCCCeEEEe
Q psy5979 6 NFIQSILTALGDKLKGSVLVVGG---DGRYFGDVAVDKIIKISGIRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIV 82 (499)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~ 82 (499)
+|+|||++|... .++||+|.. -+.|.+| ...++..+-.-....++.|.+-
T Consensus 29 E~~~AileaA~e--~~sPvIiq~S~g~~~y~gg-------------------------~~~~~~~v~~~a~~~~vPV~lH 81 (286)
T COG0191 29 ETLQAILEAAEE--EKSPVIIQFSEGAAKYAGG-------------------------ADSLAHMVKALAEKYGVPVALH 81 (286)
T ss_pred HHHHHHHHHHHH--hCCCEEEEecccHHHHhch-------------------------HHHHHHHHHHHHHHCCCCEEEE
Confidence 688999988753 356666621 1222221 2455555555556788999876
Q ss_pred CCCcccchhHHHHHHHHcCCccceEEcCCCCCCCCCCCc
Q psy5979 83 GQNGILSTPAVSALIRKHQVTGGIVLTASHNPGGPDNDF 121 (499)
Q Consensus 83 ~~~g~~pTP~~~fav~~~~~~gGI~ITaSHNP~~~~~~n 121 (499)
- ....++.......+.+.. -|||=+||-| .++|
T Consensus 82 l--DHg~~~~~~~~ai~~GFs-SvMiDgS~~~---~eEN 114 (286)
T COG0191 82 L--DHGASFEDCKQAIRAGFS-SVMIDGSHLP---FEEN 114 (286)
T ss_pred C--CCCCCHHHHHHHHhcCCc-eEEecCCcCC---HHHH
Confidence 3 456666655555555664 7999999999 5555
No 138
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=26.60 E-value=7.1e+02 Score=25.47 Aligned_cols=116 Identities=11% Similarity=-0.021 Sum_probs=60.2
Q ss_pred hhHHHHHHHhhc----CCCCCC-eEEEeCCcccccchhhHHHHHhhCCCceEEEeecCCcchHHHHHHHHHHHHHCCCeE
Q psy5979 5 ENFIQSILTALG----DKLKGS-VLVVGGDGRYFGDVAVDKIIKISGIRSVLVVGGDGRYFGDVAVDKIIKISAANGVAK 79 (499)
Q Consensus 5 ~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V 79 (499)
++|.++|+.-+. ..+.-+ -|+++..+.-.+.-+.-.++. .+..|+|-.=+...... .+...|.+|
T Consensus 71 ~~lr~aia~~~~~~~g~~~~~~~~I~it~Gs~~al~~~~~~l~~---~gd~Vlv~~P~y~~~~~-------~~~~~g~~~ 140 (388)
T PRK07366 71 LDFREAAAQWYEQRFGLAVDPETEVLPLIGSQEGTAHLPLAVLN---PGDFALLLDPGYPSHAG-------GVYLAGGQI 140 (388)
T ss_pred HHHHHHHHHHHHHhhCCcCCCcCeEEECCCcHHHHHHHHHHhCC---CCCEEEEcCCCCcchHH-------HHHhcCCEE
Confidence 468888886552 234444 466655544322212222222 56677775443333222 234578887
Q ss_pred EEeC---CCcccchh-HHHHHHHHcCCccceEEcCCCCCCCCCCCceeEEEcCCCCCCChhHHHHHHHHHH
Q psy5979 80 LIVG---QNGILSTP-AVSALIRKHQVTGGIVLTASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITT 146 (499)
Q Consensus 80 ~~~~---~~g~~pTP-~~~fav~~~~~~gGI~ITaSHNP~~~~~~nGiK~~~~~G~~~~~~~~~~Ie~~~~ 146 (499)
..+. +.+..+.. .+.-++. .+ ...|+|+..||| .|..++.+..++|-++..
T Consensus 141 ~~v~~~~~~~~~~d~~~l~~~~~-~~-~k~i~l~~p~NP--------------TG~~~s~~~~~~l~~~a~ 195 (388)
T PRK07366 141 YPMPLRAENDFLPVFADIPTEVL-AQ-ARLMVLSYPHNP--------------TTAIAPLSFFQEAVAFCQ 195 (388)
T ss_pred EEEECCCccCCCCCHHHHHHhhc-cc-ceEEEEeCCCCC--------------CCccCCHHHHHHHHHHHH
Confidence 7652 01122211 1111111 12 235778878998 688999887777766654
No 139
>cd03084 phosphohexomutase The alpha-D-phosphohexomutase superfamily includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this family include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). These enzymes play important and diverse roles in carbohydrate metabolism in organisms from bacteria to humans. Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=26.30 E-value=5.4e+02 Score=26.21 Aligned_cols=78 Identities=15% Similarity=0.195 Sum_probs=48.6
Q ss_pred CceEEEeecCCcchHHHHHHHHHHHHHCCCeEEEeCC--C----cccchhH-------HHHHHHHcCCccceEEcCCCCC
Q psy5979 48 RSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQ--N----GILSTPA-------VSALIRKHQVTGGIVLTASHNP 114 (499)
Q Consensus 48 ~~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~--~----g~~pTP~-------~~fav~~~~~~gGI~ITaSHNP 114 (499)
+-+|+|-+-....+..+...+ .+.|++|+.+.. + +..|-|. +.-.++..+++.|+.+ +|
T Consensus 112 ~~kvvvD~~~G~~~~~~~~ll----~~lg~~v~~~n~~~d~~F~~~~p~p~~~~~l~~l~~~v~~~~adlG~a~----Dg 183 (355)
T cd03084 112 KFKVVVDSVNGVGGPIAPQLL----EKLGAEVIPLNCEPDGNFGNINPDPGSETNLKQLLAVVKAEKADFGVAF----DG 183 (355)
T ss_pred CCEEEEECCCchHHHHHHHHH----HHcCCcEEEEcCcCCCCCCCCCCCCCchhhHHHHHHHHHhcCCCEEEEE----cC
Confidence 446666666666655555444 556899887731 0 1112122 4556777788888765 66
Q ss_pred CCCCCCceeEEEcCCCCCCChhH
Q psy5979 115 GGPDNDFGIKFNTSNGGPAPDAV 137 (499)
Q Consensus 115 ~~~~~~nGiK~~~~~G~~~~~~~ 137 (499)
+---+-+++++|..++++.
T Consensus 184 ----DgDRl~~vd~~G~~l~~d~ 202 (355)
T cd03084 184 ----DADRLIVVDENGGFLDGDE 202 (355)
T ss_pred ----CCceeEEECCCCceeCHhH
Confidence 3335778999999998764
No 140
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=26.26 E-value=3.4e+02 Score=25.39 Aligned_cols=84 Identities=14% Similarity=0.091 Sum_probs=49.1
Q ss_pred EEEeCCc-ccccchhhHHHHHhhC-CCceEEEeecCCcchHHHHHHHHHHHHHCCCeEEEeCCCcccchhHHHHHHHHcC
Q psy5979 24 LVVGGDG-RYFGDVAVDKIIKISG-IRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQ 101 (499)
Q Consensus 24 ~~~~~~~-~~~~~~a~~~~~~~~~-~~~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~g~~pTP~~~fav~~~~ 101 (499)
+++||.- +..+..++-.++.+.+ .+++|++=--+....+...+.....+...|+++..+........|.+.-.+.
T Consensus 3 ~~~gG~~~~~~~~~~~~~~~~~~~~~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~--- 79 (210)
T cd03129 3 LISGGGLDKAHARPILQDFLARAGGAGARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLL--- 79 (210)
T ss_pred EEEcCCcCccChHHHHHHHHHHcCCCCCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHh---
Confidence 3444443 4667888999988776 4566555333333345555667777888899888662001123355543333
Q ss_pred CccceEEcC
Q psy5979 102 VTGGIVLTA 110 (499)
Q Consensus 102 ~~gGI~ITa 110 (499)
...+|+++.
T Consensus 80 ~ad~I~~~G 88 (210)
T cd03129 80 EADGIFVGG 88 (210)
T ss_pred hCCEEEEcC
Confidence 344788865
No 141
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=25.75 E-value=1.3e+02 Score=28.58 Aligned_cols=22 Identities=18% Similarity=0.215 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHCCCeEEEe
Q psy5979 61 GDVAVDKIIKISAANGVAKLIV 82 (499)
Q Consensus 61 s~~~a~a~a~gL~s~Gi~V~~~ 82 (499)
|-.+++.+|.-|++.|.+++.+
T Consensus 50 SG~Igkk~Aa~L~s~G~~a~fv 71 (202)
T COG0794 50 SGLIGKKFAARLASTGTPAFFV 71 (202)
T ss_pred hHHHHHHHHHHHHccCCceEEe
Confidence 3678999999999999999998
No 142
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=25.73 E-value=1.3e+02 Score=30.78 Aligned_cols=41 Identities=12% Similarity=0.148 Sum_probs=27.3
Q ss_pred CCcEEEEcCCCCCChH----HHHHHHHHhcCCC--cceeeecccCCCCC
Q psy5979 211 PPFKLLINAMHGVTGP----YVKKIFLEELGAQ--PDNAVNTTPLPDFG 253 (499)
Q Consensus 211 ~~lkVvvD~~~G~~~~----~~~~il~~~lG~~--~~~~v~~~~d~~F~ 253 (499)
..+.|++||.|+.+.. .++..- -.+|++ ++ ..+.+||...+
T Consensus 261 ~~lPVi~d~sH~~G~~~~v~~~a~AA-vA~GAdGliI-E~H~~pd~als 307 (335)
T PRK08673 261 THLPVIVDPSHATGKRDLVEPLALAA-VAAGADGLIV-EVHPDPEKALS 307 (335)
T ss_pred cCCCEEEeCCCCCccccchHHHHHHH-HHhCCCEEEE-EecCCcccCCC
Confidence 4689999999998761 333333 479998 44 46666665543
No 143
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=25.31 E-value=2.5e+02 Score=29.25 Aligned_cols=45 Identities=7% Similarity=-0.115 Sum_probs=34.5
Q ss_pred hhHHHHHhhCCCceEEEeecCCc-chHHHHHHHHHHHH--HCCCeEEEe
Q psy5979 37 AVDKIIKISGIRSVLVVGGDGRY-FGDVAVDKIIKISA--ANGVAKLIV 82 (499)
Q Consensus 37 a~~~~~~~~~~~~~VvVg~D~R~-~s~~~a~a~a~gL~--s~Gi~V~~~ 82 (499)
.|-.+.+.+ ..++|+|-|++.. +.+++|+++++++. +.|++|..+
T Consensus 237 ~Y~~~~~~~-~~~kv~IvY~S~~GnTe~mA~~ia~g~~~~~~g~~v~~~ 284 (394)
T PRK11921 237 KYLEWAANY-QENQVTILYDTMWNSTRRMAEAIAEGIKKANKDVTVKLY 284 (394)
T ss_pred HHHHHhhcC-CcCcEEEEEECCchHHHHHHHHHHHHHhhcCCCCeEEEE
Confidence 466666543 4577888888875 66999999999998 788888655
No 144
>PF12456 hSac2: Inositol phosphatase ; InterPro: IPR022158 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF02383 from PFAM. hSac2 functions as an inositol polyphosphate 5-phosphatase.
Probab=25.26 E-value=47 Score=28.37 Aligned_cols=20 Identities=15% Similarity=0.071 Sum_probs=17.9
Q ss_pred CeEEEEeecCCc---ccccceec
Q psy5979 478 TGLVHIQIIRNR---QFRRHVVL 497 (499)
Q Consensus 478 ~~Wvlir~s~~~---~~~~~~~~ 497 (499)
|||+|+.|...+ ++.+.+||
T Consensus 33 ~gW~L~~~~~~~~~~~e~E~vlL 55 (115)
T PF12456_consen 33 GGWLLTEPDHWNKTENEEERVLL 55 (115)
T ss_pred EEEEEEecCcccCCCcccceEEE
Confidence 499999999999 99988876
No 145
>smart00493 TOPRIM topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins.
Probab=25.23 E-value=1.3e+02 Score=22.79 Aligned_cols=38 Identities=16% Similarity=0.204 Sum_probs=29.3
Q ss_pred HHHHHhhCCCceEEEeecCCcchHHHHHHHHHHHHHCC
Q psy5979 39 DKIIKISGIRSVLVVGGDGRYFGDVAVDKIIKISAANG 76 (499)
Q Consensus 39 ~~~~~~~~~~~~VvVg~D~R~~s~~~a~a~a~gL~s~G 76 (499)
-..+++...+..|+++.|.-..|+.++..++..|...|
T Consensus 38 ~~~l~~~~~~~~Iii~~D~D~~G~~~~~~i~~~l~~~~ 75 (76)
T smart00493 38 IKLLKRLAKKKEVILATDPDREGEAIAWKLAELLKPAG 75 (76)
T ss_pred HHHHHHHhcCCEEEEEcCCChhHHHHHHHHHHHhhhhc
Confidence 34555433337899999999999999999998887655
No 146
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=25.01 E-value=2.2e+02 Score=27.79 Aligned_cols=103 Identities=12% Similarity=0.186 Sum_probs=59.6
Q ss_pred hhHHHHHHHhhcCCCCCCeEEEeCCccccc----chhhHHHHHhhC----CCceEEE-------ee-cCCcchHHHHHHH
Q psy5979 5 ENFIQSILTALGDKLKGSVLVVGGDGRYFG----DVAVDKIIKISG----IRSVLVV-------GG-DGRYFGDVAVDKI 68 (499)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~a~~~~~~~~~----~~~~VvV-------g~-D~R~~s~~~a~a~ 68 (499)
+++++.|..+ ...-+..++++ |+-+.. ...|..++.+.. -+..|+. +. =.|.++..|...+
T Consensus 21 ~~~~~~i~~~-~~~~~~~v~t~--N~~~~~~a~~d~~~~~~l~~ad~i~~DG~gvv~~~~~~~~~~~~~Rv~G~dl~~~l 97 (243)
T PRK03692 21 QHALDYLFAD-GQLKTGTLVAI--NAEKVLTAEDDAELRELINAAEYKYADGISVVRSIRKKYPQAQVSRVAGADLWEAL 97 (243)
T ss_pred HHHHHHHHHh-hccCCcEEEEc--CHHHHHHhCcCHHHHHHHHhCCEEecCCHHHHHHHHHhcCCCCCCeeChHHHHHHH
Confidence 3455555554 22333334444 555544 456666665332 1222221 11 1477888888888
Q ss_pred HHHHHHCCCeEEEeCCCcccchhHHHHHHHHcCCccceEEcCCCCC
Q psy5979 69 IKISAANGVAKLIVGQNGILSTPAVSALIRKHQVTGGIVLTASHNP 114 (499)
Q Consensus 69 a~gL~s~Gi~V~~~~~~g~~pTP~~~fav~~~~~~gGI~ITaSHNP 114 (499)
.+.....|..|+++ |-.|. ++.-++..++..-|+.|.+.|+|
T Consensus 98 l~~~~~~~~~v~ll---G~~~~-v~~~a~~~l~~~y~l~i~g~~~G 139 (243)
T PRK03692 98 MARAGKEGTPVFLV---GGKPE-VLAQTEAKLRTQWNVNIVGSQDG 139 (243)
T ss_pred HHHHHhcCCeEEEE---CCCHH-HHHHHHHHHHHHhCCEEEEEeCC
Confidence 88888899999998 64443 44455554433337888778887
No 147
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=24.36 E-value=2.3e+02 Score=29.72 Aligned_cols=26 Identities=12% Similarity=0.050 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHH
Q psy5979 387 IWAVLAWLSVVEHTGKPVEEILKSHW 412 (499)
Q Consensus 387 i~a~l~lle~la~~~~~L~ell~~lp 412 (499)
..-.+..+.+.-..+.|++++...++
T Consensus 385 a~e~i~~~~~ai~~~~t~~~l~~~~~ 410 (427)
T TIGR03385 385 ADKRIDVLAAAIMAGLTVKDLFFFEL 410 (427)
T ss_pred HHHHHHHHHHHHHCCCCHHHHhhccc
Confidence 44445555555568899999998764
No 148
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=24.34 E-value=1.4e+02 Score=30.93 Aligned_cols=115 Identities=14% Similarity=0.068 Sum_probs=59.4
Q ss_pred eEEEeCCcc-cccc-----------hhhHHHHHhhCCCceEEEeecCCcc-------hHHHHHHHHHHHHHCCCeEEEeC
Q psy5979 23 VLVVGGDGR-YFGD-----------VAVDKIIKISGIRSVLVVGGDGRYF-------GDVAVDKIIKISAANGVAKLIVG 83 (499)
Q Consensus 23 ~~~~~~~~~-~~~~-----------~a~~~~~~~~~~~~~VvVg~D~R~~-------s~~~a~a~a~gL~s~Gi~V~~~~ 83 (499)
.+.+|+|-+ ++++ -.||..+++.+..=-=--.++.|.+ ++.--+.+.++....|+.++-
T Consensus 93 ~v~iGg~~~l~vIAGPCsIEs~eq~l~~A~~lk~~g~~~~r~g~~kpRtsp~sf~G~g~~gl~~L~~~~~e~Gl~~~t-- 170 (352)
T PRK13396 93 PVPFGENHPVVVVAGPCSVENEEMIVETAKRVKAAGAKFLRGGAYKPRTSPYAFQGHGESALELLAAAREATGLGIIT-- 170 (352)
T ss_pred CeEecCCCeEEEEEeCCcccCHHHHHHHHHHHHHcCCCEEEeeeecCCCCCcccCCchHHHHHHHHHHHHHcCCcEEE--
Confidence 356677776 3342 3477777755332111234777765 566666777777788988764
Q ss_pred CCcccchhHHHHHHHHcCCccceEEcCCC--CCC--CCCCCceeEEEcCCCCCCChh-HHHHHHHH
Q psy5979 84 QNGILSTPAVSALIRKHQVTGGIVLTASH--NPG--GPDNDFGIKFNTSNGGPAPDA-VTENIYKI 144 (499)
Q Consensus 84 ~~g~~pTP~~~fav~~~~~~gGI~ITaSH--NP~--~~~~~nGiK~~~~~G~~~~~~-~~~~Ie~~ 144 (499)
.+.....+-+.... + --+.|-|.. |-. ..-...|.-++-+.|...+.+ +...+|.+
T Consensus 171 --ev~d~~~v~~~~~~--~-d~lqIga~~~~n~~LL~~va~t~kPVllk~G~~~t~ee~~~A~e~i 231 (352)
T PRK13396 171 --EVMDAADLEKIAEV--A-DVIQVGARNMQNFSLLKKVGAQDKPVLLKRGMAATIDEWLMAAEYI 231 (352)
T ss_pred --eeCCHHHHHHHHhh--C-CeEEECcccccCHHHHHHHHccCCeEEEeCCCCCCHHHHHHHHHHH
Confidence 35555556666443 3 345554421 110 000122444566667664443 33334433
No 149
>PLN02204 diacylglycerol kinase
Probab=23.96 E-value=2.7e+02 Score=30.97 Aligned_cols=82 Identities=15% Similarity=0.190 Sum_probs=49.2
Q ss_pred HHHHHHHHHhhcCchhHHhhhcCCCCCCCcEEEEcCCCCCChH-----HHHHHHHHhcCCCcceeeecccCCCCCCCCCC
Q psy5979 184 VEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINAMHGVTGP-----YVKKIFLEELGAQPDNAVNTTPLPDFGGHHPD 258 (499)
Q Consensus 184 ~~~Y~~~l~~~i~~~~i~~~~~~~~~~~~lkVvvD~~~G~~~~-----~~~~il~~~lG~~~~~~v~~~~d~~F~~~~p~ 258 (499)
.+.+++.|...+..+.- ..+++.|+|.+..|-+.. -+.++| ++.++++. ++-.+..
T Consensus 141 ~~~w~~~l~~~l~~~~~--------r~k~llVivNP~sGkg~~~~~~~~V~p~f-~~a~i~~~-v~~T~~a--------- 201 (601)
T PLN02204 141 CQSWVDRLNASLNKEVG--------RPKNLLVFVHPLSGKGSGSRTWETVSPIF-IRAKVKTK-VIVTERA--------- 201 (601)
T ss_pred HHHHHHHHHHHHhhccC--------CCceEEEEECCCCCCcchHHHHHHHHHHH-HHcCCeEE-EEEecCc---------
Confidence 56788888877653221 125678999998886542 356677 88888753 2222111
Q ss_pred CCcccHHHHHHHHH---hCCCcEEEeeCCCCC
Q psy5979 259 PNLTYAADLVQAMQ---AGDFDLGAAFDGDGD 287 (499)
Q Consensus 259 P~~~~l~~l~~~v~---~~~adlgia~D~DgD 287 (499)
....++.+.+. ..+.|..|+.-|||-
T Consensus 202 ---ghA~d~~~~~~~~~l~~~D~VVaVGGDGt 230 (601)
T PLN02204 202 ---GHAFDVMASISNKELKSYDGVIAVGGDGF 230 (601)
T ss_pred ---chHHHHHHHHhhhhccCCCEEEEEcCccH
Confidence 12334433222 456888999988884
No 150
>COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion]
Probab=23.93 E-value=2.5e+02 Score=28.79 Aligned_cols=63 Identities=25% Similarity=0.375 Sum_probs=45.3
Q ss_pred CcEEEEcCCCCCCh--HHHHHHHHHhcC-CCcceeeecccCCCCCCCCCCCCcccHHHHHHHHHhCCCcEEEeeCC
Q psy5979 212 PFKLLINAMHGVTG--PYVKKIFLEELG-AQPDNAVNTTPLPDFGGHHPDPNLTYAADLVQAMQAGDFDLGAAFDG 284 (499)
Q Consensus 212 ~lkVvvD~~~G~~~--~~~~~il~~~lG-~~~~~~v~~~~d~~F~~~~p~P~~~~l~~l~~~v~~~~adlgia~D~ 284 (499)
.-||.+-+..|+-. .++.++. +.|. .++ + .|++..|||..+.+..-.+++++++.|+.+|.-|
T Consensus 29 ~~kVLi~YGGGSIKrnGvydqV~-~~Lkg~~~---~------E~~GVEPNP~~~Tv~kaV~i~kee~idflLAVGG 94 (384)
T COG1979 29 DAKVLIVYGGGSIKKNGVYDQVV-EALKGIEV---I------EFGGVEPNPRLETLMKAVEICKEENIDFLLAVGG 94 (384)
T ss_pred cCeEEEEecCccccccchHHHHH-HHhcCceE---E------EecCCCCCchHHHHHHHHHHHHHcCceEEEEecC
Confidence 36899888888632 3566665 5554 222 2 2667889998887877788899999999988765
No 151
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=23.83 E-value=1.8e+02 Score=30.89 Aligned_cols=27 Identities=15% Similarity=0.135 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHH
Q psy5979 386 GIWAVLAWLSVVEHTGKPVEEILKSHW 412 (499)
Q Consensus 386 gi~a~l~lle~la~~~~~L~ell~~lp 412 (499)
...-.+..+.++-..+.|++++.+.++
T Consensus 411 ~a~e~i~~~~~ai~~~~t~~~l~~~~~ 437 (450)
T TIGR01421 411 GVDEMLQGFAVAIKMGATKADFDNTVA 437 (450)
T ss_pred CHHHHHHHHHHHHHCCCCHHHHhhccc
Confidence 333444455555567889988877543
No 152
>COG4019 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.46 E-value=3.1e+02 Score=23.87 Aligned_cols=83 Identities=10% Similarity=0.126 Sum_probs=48.0
Q ss_pred cEEEEcCCCCCChHHHHHHHHHhcCCCcceeeecccCCCCCCCCCCCCcccHHHHHHHHHhCCCcEEEee-----CCCCC
Q psy5979 213 FKLLINAMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDPNLTYAADLVQAMQAGDFDLGAAF-----DGDGD 287 (499)
Q Consensus 213 lkVvvD~~~G~~~~~~~~il~~~lG~~~~~~v~~~~d~~F~~~~p~P~~~~l~~l~~~v~~~~adlgia~-----D~DgD 287 (499)
-+++|-..|----..+..+| ++++..-.. ....|.+|....|-| .+..-.-.+.-++||+.|+- -|.|.
T Consensus 37 ~r~vV~t~N~~K~~aindvl-rrf~l~Eae--ml~~~T~~ADlTrmP---A~tKalmaldis~ADlvIARGRLGvPGSGs 110 (156)
T COG4019 37 KRIVVATNNQKKFKAINDVL-RRFCLAEAE--MLDIDTRFADLTRMP---ALTKALMALDISKADLVIARGRLGVPGSGS 110 (156)
T ss_pred ceEEEecCCHHHHHHHHHHH-HHhccchHH--HhcCccchhhcccCh---HHHHHHHhccccCCcEEEeeccccCCCCCc
Confidence 36666666654455677778 777754221 122334444333333 12211123456789999885 46777
Q ss_pred eeEEEccCceEeCC
Q psy5979 288 RNMVLGKKAFFVNP 301 (499)
Q Consensus 288 Rl~vvd~~G~~l~~ 301 (499)
=+.+.|++|++++.
T Consensus 111 mlVimD~rgRlLtA 124 (156)
T COG4019 111 MLVIMDERGRLLTA 124 (156)
T ss_pred EEEEEccccceeee
Confidence 77788999987653
No 153
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=23.30 E-value=7.6e+02 Score=26.15 Aligned_cols=97 Identities=15% Similarity=0.141 Sum_probs=52.0
Q ss_pred HHHHHHHhhcCCCCCCeEEEeCCcccccchhhHHHHHhhCCCceEEEeecCCcchHHHHHHH-------HHHHHHCCCeE
Q psy5979 7 FIQSILTALGDKLKGSVLVVGGDGRYFGDVAVDKIIKISGIRSVLVVGGDGRYFGDVAVDKI-------IKISAANGVAK 79 (499)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~VvVg~D~R~~s~~~a~a~-------a~gL~s~Gi~V 79 (499)
.+++|.++++..++|++|++=|-+. .|...+..++..|. +|+| .|..+.-...+... .+. ..+++|
T Consensus 188 ~~~~i~r~t~~~l~GktVvViG~G~--IG~~va~~ak~~Ga--~ViV-~d~d~~R~~~A~~~G~~~~~~~e~--v~~aDV 260 (413)
T cd00401 188 LIDGIKRATDVMIAGKVAVVAGYGD--VGKGCAQSLRGQGA--RVIV-TEVDPICALQAAMEGYEVMTMEEA--VKEGDI 260 (413)
T ss_pred hHHHHHHhcCCCCCCCEEEEECCCH--HHHHHHHHHHHCCC--EEEE-EECChhhHHHHHhcCCEEccHHHH--HcCCCE
Confidence 5688888888888887776644442 57777777776665 4444 44433322222211 111 135677
Q ss_pred EEeCCCcccch-hHHHHHHHHcCCccceEEcCCCCC
Q psy5979 80 LIVGQNGILST-PAVSALIRKHQVTGGIVLTASHNP 114 (499)
Q Consensus 80 ~~~~~~g~~pT-P~~~fav~~~~~~gGI~ITaSHNP 114 (499)
+.- .+.+ +++.-+....-..+|+++..+|.+
T Consensus 261 VI~----atG~~~~i~~~~l~~mk~GgilvnvG~~~ 292 (413)
T cd00401 261 FVT----TTGNKDIITGEHFEQMKDGAIVCNIGHFD 292 (413)
T ss_pred EEE----CCCCHHHHHHHHHhcCCCCcEEEEeCCCC
Confidence 653 2323 334444222223567777666544
No 154
>PRK09271 flavodoxin; Provisional
Probab=23.25 E-value=1.4e+02 Score=26.83 Aligned_cols=33 Identities=9% Similarity=-0.078 Sum_probs=26.1
Q ss_pred eEEEeecCCc-chHHHHHHHHHHHHHCCCeEEEe
Q psy5979 50 VLVVGGDGRY-FGDVAVDKIIKISAANGVAKLIV 82 (499)
Q Consensus 50 ~VvVg~D~R~-~s~~~a~a~a~gL~s~Gi~V~~~ 82 (499)
+|+|-+.+.. +.+.+|+.++++|.+.|++|...
T Consensus 2 kv~IvY~S~tGnTe~~A~~ia~~l~~~g~~v~~~ 35 (160)
T PRK09271 2 RILLAYASLSGNTREVAREIEERCEEAGHEVDWV 35 (160)
T ss_pred eEEEEEEcCCchHHHHHHHHHHHHHhCCCeeEEE
Confidence 4666666654 67999999999999999987543
No 155
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=22.78 E-value=2.2e+02 Score=29.77 Aligned_cols=66 Identities=14% Similarity=0.109 Sum_probs=45.2
Q ss_pred CcEEEEcCCCCCChHHHHHHHHHhcCCCcceeeecccCCCCCCCCCCCCcccHHHHHHHHHhCCCcEEEeeCCC
Q psy5979 212 PFKLLINAMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDPNLTYAADLVQAMQAGDFDLGAAFDGD 285 (499)
Q Consensus 212 ~lkVvvD~~~G~~~~~~~~il~~~lG~~~~~~v~~~~d~~F~~~~p~P~~~~l~~l~~~v~~~~adlgia~D~D 285 (499)
+.-||.|.. -....++.+++ +.|...-+. +. .|....|||..+....-.+.+++.++|..|++-|-
T Consensus 31 r~liVTd~~-~~~~g~~~~v~-~~L~~~~i~-~~-----if~~v~p~P~~~~v~~~~~~~~~~~~D~iIalGGG 96 (377)
T COG1454 31 RALIVTDRG-LAKLGLLDKVL-DSLDAAGIE-YE-----VFDEVEPEPTIETVEAGAEVAREFGPDTIIALGGG 96 (377)
T ss_pred ceEEEECCc-cccchhHHHHH-HHHHhcCCe-EE-----EecCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 456777775 33345777776 666554321 11 23346789988888888899999999999998663
No 156
>PRK07324 transaminase; Validated
Probab=22.71 E-value=7.6e+02 Score=25.22 Aligned_cols=116 Identities=16% Similarity=0.151 Sum_probs=58.8
Q ss_pred hhHHHHHHHhhcCCCCCCeEEEeCCcccccchhhHHHHHhhCCCceEEEeecCCcchHHHHHHHHHHHHHCCCeEEEeC-
Q psy5979 5 ENFIQSILTALGDKLKGSVLVVGGDGRYFGDVAVDKIIKISGIRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVG- 83 (499)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~- 83 (499)
..|-++|++-+.. +..+-|++...+-.-..-++-.++ +.+..|++-.-+... + ...+...|++|..+.
T Consensus 65 ~~lr~~ia~~~~~-~~~~~vi~t~G~~~al~~~~~~l~---~~gd~Vl~~~P~y~~---~----~~~~~~~g~~v~~v~~ 133 (373)
T PRK07324 65 PEFKEAVASLYQN-VKPENILQTNGATGANFLVLYALV---EPGDHVISVYPTYQQ---L----YDIPESLGAEVDYWQL 133 (373)
T ss_pred HHHHHHHHHHhcC-CChhhEEEcCChHHHHHHHHHHhC---CCCCEEEEcCCCchh---H----HHHHHHcCCEEEEEec
Confidence 3566777765542 333334444333222222233333 256778775433222 2 233456788876653
Q ss_pred --CCcccchhH-HHHHHHHcCCccceEEcCCCCCCCCCCCceeEEEcCCCCCCChhHHHHHHHHHHh
Q psy5979 84 --QNGILSTPA-VSALIRKHQVTGGIVLTASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITTQ 147 (499)
Q Consensus 84 --~~g~~pTP~-~~fav~~~~~~gGI~ITaSHNP~~~~~~nGiK~~~~~G~~~~~~~~~~Ie~~~~~ 147 (499)
+.|..+.+. +.-++.. + .-.|+|+..||| .|..++++..++|-++..+
T Consensus 134 ~~~~~~~~d~~~l~~~~~~-~-~kli~i~~p~NP--------------tG~~~~~~~l~~i~~~a~~ 184 (373)
T PRK07324 134 KEENGWLPDLDELRRLVRP-N-TKLICINNANNP--------------TGALMDRAYLEEIVEIARS 184 (373)
T ss_pred ccccCCCCCHHHHHHhCCC-C-CcEEEEeCCCCC--------------CCCCCCHHHHHHHHHHHHH
Confidence 123333332 2222211 2 235777777888 5888888777777766543
No 157
>TIGR01391 dnaG DNA primase, catalytic core. This protein contains a CHC2 zinc finger (Pfam:PF01807) and a Toprim domain (Pfam:PF01751).
Probab=22.66 E-value=2.6e+02 Score=29.58 Aligned_cols=72 Identities=18% Similarity=0.241 Sum_probs=46.0
Q ss_pred hhhHHHHHHHhhcCCCCCCeEEEeCCcccccchhhHHHHHhhCCCceEEEeecCCcchHHHHHHHHHHHHHCCCeEEEe
Q psy5979 4 TENFIQSILTALGDKLKGSVLVVGGDGRYFGDVAVDKIIKISGIRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIV 82 (499)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~ 82 (499)
+|-+.++|. +.+.|.++-+-++| +. +... -...+.+. ...|++.+|.-..++..+.-++..|...|++|..+
T Consensus 263 vEG~~Dais-l~~~G~~~aVA~~G--ta-lt~~-~~~~l~r~--~~~vvl~~D~D~aG~~aa~r~~~~l~~~g~~v~v~ 334 (415)
T TIGR01391 263 VEGYMDVIA-LHQAGIKNAVASLG--TA-LTEE-HIKLLKRY--ADEIILCFDGDKAGRKAALRAIELLLPLGINVKVI 334 (415)
T ss_pred EecHHHHHH-HHHCCCCcEEECCC--CC-CcHH-HHHHHHhh--CCeEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 456667764 33445543222222 22 2322 22344422 34899999999999999999999999999888764
No 158
>PRK06836 aspartate aminotransferase; Provisional
Probab=22.65 E-value=8.4e+02 Score=25.04 Aligned_cols=115 Identities=15% Similarity=0.141 Sum_probs=60.0
Q ss_pred hHHHHHHHhhc----CCCCCCeEEEeCCcccccchhhHHHHHhhCCCceEEEeecCCcchHHHHHHHHHHHHHCCCeEEE
Q psy5979 6 NFIQSILTALG----DKLKGSVLVVGGDGRYFGDVAVDKIIKISGIRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLI 81 (499)
Q Consensus 6 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~ 81 (499)
.+.++|+.-+. -.+..+-|++..++......++..++. .+..|++..-+... +. ..+...|+++..
T Consensus 77 ~lr~~ia~~l~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~---~gd~Vli~~p~~~~---~~----~~~~~~g~~v~~ 146 (394)
T PRK06836 77 EVREAIAESLNRRFGTPLTADHIVMTCGAAGALNVALKAILN---PGDEVIVFAPYFVE---YR----FYVDNHGGKLVV 146 (394)
T ss_pred HHHHHHHHHHHHHhCCCCCcCcEEEeCChHHHHHHHHHHhcC---CCCEEEEcCCCCcc---HH----HHHHHcCCEEEE
Confidence 45666665543 234455566666665544333444433 56677776533332 11 223467888876
Q ss_pred eCCC-c-ccchh-HHHHHHHHcCCccceEEcCCCCCCCCCCCceeEEEcCCCCCCChhHHHHHHHHHH
Q psy5979 82 VGQN-G-ILSTP-AVSALIRKHQVTGGIVLTASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITT 146 (499)
Q Consensus 82 ~~~~-g-~~pTP-~~~fav~~~~~~gGI~ITaSHNP~~~~~~nGiK~~~~~G~~~~~~~~~~Ie~~~~ 146 (499)
+.-. . ..+.+ .+.=++.. + ...|.++..||| .|..++.+..++|-++..
T Consensus 147 v~~~~~~~~~d~~~l~~~~~~-~-~~~v~~~~p~NP--------------tG~~~~~~~~~~l~~la~ 198 (394)
T PRK06836 147 VPTDTDTFQPDLDALEAAITP-K-TKAVIINSPNNP--------------TGVVYSEETLKALAALLE 198 (394)
T ss_pred EecCCccCcCCHHHHHhhcCc-C-ceEEEEeCCCCC--------------CCcCCCHHHHHHHHHHHH
Confidence 6311 0 01111 12211211 2 345777777888 688888877777766654
No 159
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=22.62 E-value=5.3e+02 Score=24.39 Aligned_cols=75 Identities=15% Similarity=0.135 Sum_probs=55.9
Q ss_pred HHHHHHhhc-CCCCCCeEEEeCCcccccchhhHHHHHhhCCCceEEEeecCCcchHHHHHHHHHHHHHCCCeEEEeCCCc
Q psy5979 8 IQSILTALG-DKLKGSVLVVGGDGRYFGDVAVDKIIKISGIRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNG 86 (499)
Q Consensus 8 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~g 86 (499)
.|||..|.. ..++.+++.+-.| ...|||--+.+.-.=+.+++-+...++=..+-++++..|.+.+.+++.+ .|
T Consensus 14 lqaiida~~~~~~~a~i~~Visd----~~~A~~lerA~~~gIpt~~~~~k~~~~r~~~d~~l~~~l~~~~~dlvvL--AG 87 (200)
T COG0299 14 LQAIIDAIKGGKLDAEIVAVISD----KADAYALERAAKAGIPTVVLDRKEFPSREAFDRALVEALDEYGPDLVVL--AG 87 (200)
T ss_pred HHHHHHHHhcCCCCcEEEEEEeC----CCCCHHHHHHHHcCCCEEEeccccCCCHHHHHHHHHHHHHhcCCCEEEE--cc
Confidence 489998886 4455666655333 2467887776443346788888888888889999999999999999998 58
Q ss_pred cc
Q psy5979 87 IL 88 (499)
Q Consensus 87 ~~ 88 (499)
.+
T Consensus 88 yM 89 (200)
T COG0299 88 YM 89 (200)
T ss_pred hH
Confidence 54
No 160
>PLN03026 histidinol-phosphate aminotransferase; Provisional
Probab=22.51 E-value=8e+02 Score=25.15 Aligned_cols=110 Identities=18% Similarity=0.228 Sum_probs=59.2
Q ss_pred hhHHHHHHHhhcCCCCCCeEEEeCCcccccchhhHHHHHhhCCCceEEEeecCCcchHHHHHHHHHHHHHCCCeEEEeCC
Q psy5979 5 ENFIQSILTALGDKLKGSVLVVGGDGRYFGDVAVDKIIKISGIRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQ 84 (499)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~ 84 (499)
+.+.++|++-++ +..+-|+++.++...+..+...++. .+..|++..-+. ..+.. .....|+++..+.-
T Consensus 89 ~~lr~~ia~~~~--~~~~~I~~t~Ga~~~i~~~~~~~~~---~gd~Vlv~~P~y---~~y~~----~~~~~g~~~~~v~~ 156 (380)
T PLN03026 89 RRLRAALAEDSG--LESENILVGCGADELIDLLMRCVLD---PGDKIIDCPPTF---GMYVF----DAAVNGAEVIKVPR 156 (380)
T ss_pred HHHHHHHHHHhC--cChhhEEEcCCHHHHHHHHHHHhcC---CCCEEEEcCCCh---HHHHH----HHHHcCCEEEEeec
Confidence 467778877665 4445567777766655444433333 566777765332 22222 23457988876631
Q ss_pred -Cc-ccchhHHHHHHHHcCCccceEEcCCCCCCCCCCCceeEEEcCCCCCCChhHHHHH
Q psy5979 85 -NG-ILSTPAVSALIRKHQVTGGIVLTASHNPGGPDNDFGIKFNTSNGGPAPDAVTENI 141 (499)
Q Consensus 85 -~g-~~pTP~~~fav~~~~~~gGI~ITaSHNP~~~~~~nGiK~~~~~G~~~~~~~~~~I 141 (499)
.+ ......+.-++...+. ..|.|+.-||| .|..++.+..++|
T Consensus 157 ~~~~~~d~~~l~~~~~~~~~-~~v~l~~P~NP--------------TG~~~~~~~l~~l 200 (380)
T PLN03026 157 TPDFSLDVPRIVEAVETHKP-KLLFLTSPNNP--------------DGSIISDDDLLKI 200 (380)
T ss_pred CCCCCcCHHHHHHHHhccCC-cEEEEeCCCCC--------------CCCCCCHHHHHHH
Confidence 11 1122223333322233 46777777888 6878876544443
No 161
>PRK06290 aspartate aminotransferase; Provisional
Probab=22.32 E-value=8.9e+02 Score=25.21 Aligned_cols=116 Identities=12% Similarity=0.100 Sum_probs=63.7
Q ss_pred hhHHHHHHHhhc--CC---CCCC-eEEEeCCcccccchhhHHHHHhhCCCceEEEeecCCcchHHHHHHHHHHHHHCCCe
Q psy5979 5 ENFIQSILTALG--DK---LKGS-VLVVGGDGRYFGDVAVDKIIKISGIRSVLVVGGDGRYFGDVAVDKIIKISAANGVA 78 (499)
Q Consensus 5 ~~~~~~~~~~~~--~~---~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~ 78 (499)
..|.++|++-+. .+ +..+ -|+++..+.--+..++..++. .+..|+|-.-+...-..+ +...|.+
T Consensus 84 ~~lr~aia~~~~~~~g~~~~~~~~~I~it~Gs~~al~~~~~~~~~---~gd~Vlv~~P~y~~~~~~-------~~~~g~~ 153 (410)
T PRK06290 84 QEFKEAAARYMEKVFGVKDIDPVTEVIHSIGSKPALAMLPSCFIN---PGDVTLMTVPGYPVTGTH-------TKYYGGE 153 (410)
T ss_pred HHHHHHHHHHHHHHcCCCcCCCcceEEEccCHHHHHHHHHHHhCC---CCCEEEEeCCCCccHHHH-------HHHcCCE
Confidence 567788886653 23 3333 466666655533333333333 566777766555443222 2346888
Q ss_pred EEEeC---CCcccchhH-HHHHHHHcCCccceEEcCCCCCCCCCCCceeEEEcCCCCCCChhHHHHHHHHHH
Q psy5979 79 KLIVG---QNGILSTPA-VSALIRKHQVTGGIVLTASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITT 146 (499)
Q Consensus 79 V~~~~---~~g~~pTP~-~~fav~~~~~~gGI~ITaSHNP~~~~~~nGiK~~~~~G~~~~~~~~~~Ie~~~~ 146 (499)
+..+. +.+..+.+. +.-++.. + ...|+++..||| .|..++.+..++|-++..
T Consensus 154 v~~v~~~~~~~~~~d~~~l~~~~~~-~-~k~i~l~nP~NP--------------TG~v~s~e~l~~l~~la~ 209 (410)
T PRK06290 154 VYNLPLLEENNFLPDLDSIPKDIKE-K-AKLLYLNYPNNP--------------TGAVATKEFYEEVVDFAK 209 (410)
T ss_pred EEEEecCCCcCCcCCHHHHHHhhcc-c-ceEEEEECCCCC--------------CCcCCCHHHHHHHHHHHH
Confidence 77653 112222322 2222222 2 346777767888 688999887777766653
No 162
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=22.27 E-value=7.4e+02 Score=26.13 Aligned_cols=69 Identities=17% Similarity=0.245 Sum_probs=40.1
Q ss_pred hhhHHHHHHHhhcCCCCCCeEEEeCCcccccchhhHHHHHhhCCCceEEEeecCCcchHHHHHHHHHHHHHCCCeEEEe
Q psy5979 4 TENFIQSILTALGDKLKGSVLVVGGDGRYFGDVAVDKIIKISGIRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIV 82 (499)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~ 82 (499)
|+.|++.|++.++..++.. +..--.|++ .++..... .-.+++|+|.-| +..+-++++-|...|+++..+
T Consensus 261 t~~~l~~l~~~~g~~~~~~--i~~~~~~~~--~~~~d~~~-~l~gkrv~v~g~-----~~~~~~l~~~L~elG~~~~~v 329 (429)
T cd03466 261 TDEFMSLLSKLTGKPIPEK--YTRERGRLL--DAMIDAHK-YNFGRKAAIYGE-----PDFVVAITRFVLENGMVPVLI 329 (429)
T ss_pred HHHHHHHHHHHHCCCcCHH--HHHHHHHHH--HHHHHHHH-hcCCCEEEEEcC-----HHHHHHHHHHHHHCCCEEEEE
Confidence 7899999999998654310 010001111 11111111 124667777555 567788888888999998655
No 163
>PRK08452 flagellar protein FlaG; Provisional
Probab=21.86 E-value=2.5e+02 Score=24.37 Aligned_cols=47 Identities=9% Similarity=0.113 Sum_probs=35.3
Q ss_pred HHHHHHHHhCCCcEEEeeCCCCCeeEE--EccC-ce---EeCCCcHHHHHHHH
Q psy5979 265 ADLVQAMQAGDFDLGAAFDGDGDRNMV--LGKK-AF---FVNPSDSLAVLAAH 311 (499)
Q Consensus 265 ~~l~~~v~~~~adlgia~D~DgDRl~v--vd~~-G~---~l~~d~~~~lla~~ 311 (499)
+.|.+.+...+.+|=|.+|.+.+|+.| +|.+ |+ -+++++++-++.+.
T Consensus 60 e~lN~~~~~~~~~L~F~~de~~~~~vVkVvD~~T~eVIRqIP~Ee~L~l~~~m 112 (124)
T PRK08452 60 EKLNEEMKRLDTNIRFGYNDKIKGLVVSVKEANGGKVIREIPSKEAIELMEYM 112 (124)
T ss_pred HHHHHHHHhhCCceEEEEcCCCCcEEEEEEECCCCceeeeCCCHHHHHHHHHH
Confidence 445556667788999999999999776 5654 54 46888888777665
No 164
>COG1948 MUS81 ERCC4-type nuclease [DNA replication, recombination, and repair]
Probab=21.46 E-value=2.9e+02 Score=27.15 Aligned_cols=70 Identities=14% Similarity=0.184 Sum_probs=43.0
Q ss_pred hhhHHHHHH--Hhh------cCCCCCCeEEEeCCcccccchhhHHHHHhhCCCceEEEeecCCcchHHHHHHHHHHHHHC
Q psy5979 4 TENFIQSIL--TAL------GDKLKGSVLVVGGDGRYFGDVAVDKIIKISGIRSVLVVGGDGRYFGDVAVDKIIKISAAN 75 (499)
Q Consensus 4 ~~~~~~~~~--~~~------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~VvVg~D~R~~s~~~a~a~a~gL~s~ 75 (499)
.+||++||. |-| -.--+-+++++++| ++-.-+ .+.+=..+..|+++.....
T Consensus 75 ~~Dfv~Si~dgRlfeQ~~rL~~~y~rpvliVegd---~~~~~~------------------~~i~~~av~~al~s~~vdf 133 (254)
T COG1948 75 ISDFVSSIIDGRLFEQAKRLKKSYERPVLIVEGD---DSFSRR------------------PKIHPNAVRGALASLAVDF 133 (254)
T ss_pred HHHHHHHHhcchHHHHHHHHHhcCCccEEEEEcc---cccccc------------------cccCHHHHHHHHHHHHhhc
Confidence 589999998 444 23444677777777 120000 0123377888888888889
Q ss_pred CCeEEEeCCCcccchhHHHHH
Q psy5979 76 GVAKLIVGQNGILSTPAVSAL 96 (499)
Q Consensus 76 Gi~V~~~~~~g~~pTP~~~fa 96 (499)
|+.|+.- .+..-|-.+=+.
T Consensus 134 g~~vi~t--~~~~~Ta~~i~~ 152 (254)
T COG1948 134 GLPVIWT--RSPEETAELIHE 152 (254)
T ss_pred CceEEEe--CCHHHHHHHHHH
Confidence 9999876 344445444333
No 165
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=21.35 E-value=1.3e+02 Score=25.13 Aligned_cols=49 Identities=20% Similarity=0.229 Sum_probs=32.6
Q ss_pred cHHHHHHHHHhCCCcEEEeeCCCCCeeEE--EccC-ce---EeCCCcHHHHHHHH
Q psy5979 263 YAADLVQAMQAGDFDLGAAFDGDGDRNMV--LGKK-AF---FVNPSDSLAVLAAH 311 (499)
Q Consensus 263 ~l~~l~~~v~~~~adlgia~D~DgDRl~v--vd~~-G~---~l~~d~~~~lla~~ 311 (499)
.+..|.+.+...+..|-|..|.|.+|+.| +|.+ |+ -|.+++++-|....
T Consensus 42 ~v~~ln~~~~~~~~~l~F~vde~~~~~vVkViD~~T~eVIRqIP~Ee~l~l~~~l 96 (107)
T PF03646_consen 42 AVEKLNEFLQALNTSLRFSVDEESGRVVVKVIDKETGEVIRQIPPEELLDLAKRL 96 (107)
T ss_dssp HHHHHHHHHTTSS--EEEEEEEETTEEEEEEEETTT-SEEEEE-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCceEEEEecCCCcEEEEEEECCCCcEEEeCCcHHHHHHHHHH
Confidence 34455566667788999999999999766 5653 64 47888888776554
No 166
>COG0860 AmiC N-acetylmuramoyl-L-alanine amidase [Cell envelope biogenesis, outer membrane]
Probab=21.30 E-value=2.7e+02 Score=26.89 Aligned_cols=64 Identities=14% Similarity=0.169 Sum_probs=39.0
Q ss_pred CCcEEEEcCCCCCC-------------------hHHHHHHHHHhcCCCcceeeecccCCCCCCCCCCCCcccHHHHHHHH
Q psy5979 211 PPFKLLINAMHGVT-------------------GPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDPNLTYAADLVQAM 271 (499)
Q Consensus 211 ~~lkVvvD~~~G~~-------------------~~~~~~il~~~lG~~~~~~v~~~~d~~F~~~~p~P~~~~l~~l~~~v 271 (499)
...+|++|+.||-. +..+...| ++.|++++ +. ..+..|. .+.+=.++.
T Consensus 41 ~~~~I~IDpGHGG~D~GAig~~g~~EKdvtL~ia~~l~~~L-~~~g~~v~--mT-R~~D~~~---------~l~~R~~~A 107 (231)
T COG0860 41 GGKTIVIDPGHGGKDPGAIGPNGTLEKDVTLDIAKRLRDLL-RAEGVEVV--LT-RTSDTFV---------SLNERVAIA 107 (231)
T ss_pred CCeEEEEcCCCCCCCCCccCCCCCccceeHHHHHHHHHHHH-HhCCCEEE--Ee-cCCCCcC---------CHHHHHHHH
Confidence 46899999999831 12455566 77786543 22 2222332 234444555
Q ss_pred HhCCCcEEEeeCCCCC
Q psy5979 272 QAGDFDLGAAFDGDGD 287 (499)
Q Consensus 272 ~~~~adlgia~D~DgD 287 (499)
.+.++|+.+.+-.|+=
T Consensus 108 ~~~~adlfiSIH~na~ 123 (231)
T COG0860 108 NASGADLFVSIHANAA 123 (231)
T ss_pred HhcCCCEEEEEecCCC
Confidence 6778999988877653
No 167
>TIGR01114 mtrH N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit H. coenzyme M methyltransferase subunit H in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=21.22 E-value=1.5e+02 Score=29.96 Aligned_cols=78 Identities=15% Similarity=0.122 Sum_probs=50.8
Q ss_pred HHHhhCCCceEEEeecCCcchHHHHHH------------HHHHHHHCCCeEEEeCCCcccchhH---------HHHHHH-
Q psy5979 41 IIKISGIRSVLVVGGDGRYFGDVAVDK------------IIKISAANGVAKLIVGQNGILSTPA---------VSALIR- 98 (499)
Q Consensus 41 ~~~~~~~~~~VvVg~D~R~~s~~~a~a------------~a~gL~s~Gi~V~~~~~~g~~pTP~---------~~fav~- 98 (499)
.|++++.++.|++++|.+..|..=+.. +...+-.+|++-.++ ....||. ..++++
T Consensus 141 aL~esdi~aaIiLaFnp~dpsv~gr~~~l~~gg~~~~~gll~~ae~~GI~~pli---D~avtplg~g~g~a~r~~~a~K~ 217 (314)
T TIGR01114 141 VLKESDLSAAIVLAFNPMDPTVEGKIDILEVGGGTSDKGMLEIAEECGIKYPLI---DVAVTPLGAGAGAAVRSSFAVKA 217 (314)
T ss_pred HHHhcCCCeEEEEecCCCCCCHHHHHHHHHhcCccccccHHHHHHHcCCCceee---cccccCCCCCccHHHHHHHHHHH
Confidence 356677789999999999887654444 455566789998887 4555655 345554
Q ss_pred HcCCccceEEcCCCCCCCCCCCceeEEE
Q psy5979 99 KHQVTGGIVLTASHNPGGPDNDFGIKFN 126 (499)
Q Consensus 99 ~~~~~gGI~ITaSHNP~~~~~~nGiK~~ 126 (499)
++|...| .|-||-+ +.|.++|=+
T Consensus 218 k~G~PvG---~g~hN~~--saW~wlk~~ 240 (314)
T TIGR01114 218 KFGLPVG---GGIHNVP--SAWDWLREF 240 (314)
T ss_pred HhCCCcC---cccccCc--hHHHHHHHh
Confidence 4555444 2447864 567776643
No 168
>COG1732 OpuBC Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) [Cell envelope biogenesis, outer membrane]
Probab=21.10 E-value=2.2e+02 Score=28.67 Aligned_cols=55 Identities=15% Similarity=0.132 Sum_probs=47.4
Q ss_pred CCceEEEeecCCcchHHHHHHHHHHHHHCCCeEEEeCCCcccchhHHHHHHHHcCCc
Q psy5979 47 IRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQVT 103 (499)
Q Consensus 47 ~~~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~g~~pTP~~~fav~~~~~~ 103 (499)
..+.|+||.=.-.-+..+.+.+...|..+|++|-+- .|.-.||+++=|++.-+.+
T Consensus 31 ~~~~I~VgsK~~tE~~IL~~m~~~lle~~~~kv~~~--~~lG~t~v~~~Al~~G~ID 85 (300)
T COG1732 31 AAKTIVVGSKIFTEQYILGNILKQLLEKNGIKVEDK--TGLGGTAVVRNALKSGDID 85 (300)
T ss_pred cCCCEEEecCCCcHHHHHHHHHHHHHHhcCCceeec--cCCCchHHHHHHHHcCCCC
Confidence 467899998888888999999999999999999987 5899999999998875443
No 169
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=20.80 E-value=3.6e+02 Score=29.11 Aligned_cols=45 Identities=18% Similarity=-0.098 Sum_probs=33.7
Q ss_pred hhHHHHHhhCCCceEEEeecCCc-chHHHHHHHHHHHHHC--CCeEEEe
Q psy5979 37 AVDKIIKISGIRSVLVVGGDGRY-FGDVAVDKIIKISAAN--GVAKLIV 82 (499)
Q Consensus 37 a~~~~~~~~~~~~~VvVg~D~R~-~s~~~a~a~a~gL~s~--Gi~V~~~ 82 (499)
.|-.+...+ ..++|+|-|++.. +.+.+|+++++++.+. |++|...
T Consensus 241 ~Y~~~~~~~-~~~kv~IvY~S~~GnTe~mA~~ia~gl~~~g~gv~v~~~ 288 (479)
T PRK05452 241 LYLKWAADY-QEDRITIFYDTMSNNTRMMADAIAQGIAEVDPRVAVKIF 288 (479)
T ss_pred HHHHHhhcc-CcCcEEEEEECCccHHHHHHHHHHHHHHhhCCCceEEEE
Confidence 355555532 4577999999885 4799999999999976 6766554
No 170
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=20.54 E-value=1.7e+02 Score=25.23 Aligned_cols=24 Identities=17% Similarity=0.066 Sum_probs=20.1
Q ss_pred cchHHHHHHHHHHHHHCCCeEEEe
Q psy5979 59 YFGDVAVDKIIKISAANGVAKLIV 82 (499)
Q Consensus 59 ~~s~~~a~a~a~gL~s~Gi~V~~~ 82 (499)
-+++.+|+.++++|.+.|++|..+
T Consensus 8 G~te~~A~~ia~~l~~~g~~~~~~ 31 (143)
T PF00258_consen 8 GNTEKMAEAIAEGLRERGVEVRVV 31 (143)
T ss_dssp SHHHHHHHHHHHHHHHTTSEEEEE
T ss_pred hhHHHHHHHHHHHHHHcCCceeee
Confidence 467999999999999999866554
No 171
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=20.50 E-value=1.3e+02 Score=24.75 Aligned_cols=43 Identities=14% Similarity=0.232 Sum_probs=33.2
Q ss_pred ceEEEeecCCcchHHHHHHHHHHHHHCCCeEEEeCCCcccchhHHH
Q psy5979 49 SVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVS 94 (499)
Q Consensus 49 ~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~g~~pTP~~~ 94 (499)
++|+|+.|....+....+.++.-....|.+|+.+ ...+.+...
T Consensus 3 ~~Ilv~~d~~~~~~~al~~a~~la~~~~~~i~~l---~v~~~~~~~ 45 (140)
T PF00582_consen 3 KRILVAIDGSEESRRALRFALELAKRSGAEITLL---HVIPPPPQY 45 (140)
T ss_dssp SEEEEEESSSHHHHHHHHHHHHHHHHHTCEEEEE---EEEESCHCH
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHhhCCeEEEE---Eeecccccc
Confidence 5899999999999888888877666778888887 556555543
No 172
>PRK08361 aspartate aminotransferase; Provisional
Probab=20.46 E-value=9.2e+02 Score=24.66 Aligned_cols=117 Identities=13% Similarity=0.142 Sum_probs=59.8
Q ss_pred hhhHHHHHHHhhc----CCCCCCeEEEeCCcccccchhhHHHHHhhCCCceEEEeecCCcchHHHHHHHHHHHHHCCCeE
Q psy5979 4 TENFIQSILTALG----DKLKGSVLVVGGDGRYFGDVAVDKIIKISGIRSVLVVGGDGRYFGDVAVDKIIKISAANGVAK 79 (499)
Q Consensus 4 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V 79 (499)
...|.++|++-+. .++..+-|+++..+..-+.-++-.++ ..+..|++-.-+.... ...+...|.++
T Consensus 72 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~---~~g~~Vlv~~p~y~~~-------~~~~~~~g~~~ 141 (391)
T PRK08361 72 IPELREAIAEYYKKFYGVDVDVDNVIVTAGAYEATYLAFESLL---EEGDEVIIPDPAFVCY-------VEDAKIAEAKP 141 (391)
T ss_pred cHHHHHHHHHHHHHHhCCCCCcccEEEeCChHHHHHHHHHHhc---CCCCEEEEcCCCCccc-------HHHHHHcCCEE
Confidence 3567788886653 34555556665544332211222222 2466777765443332 12334568887
Q ss_pred EEeC--CC-cccch-hHHHHHHHHcCCccceEEcCCCCCCCCCCCceeEEEcCCCCCCChhHHHHHHHHHH
Q psy5979 80 LIVG--QN-GILST-PAVSALIRKHQVTGGIVLTASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITT 146 (499)
Q Consensus 80 ~~~~--~~-g~~pT-P~~~fav~~~~~~gGI~ITaSHNP~~~~~~nGiK~~~~~G~~~~~~~~~~Ie~~~~ 146 (499)
+.+. .. +..+. ..+.-++.. + ...|+|+..||| .|..++.+..++|-++..
T Consensus 142 ~~v~~~~~~~~~~d~~~l~~~i~~-~-~~~v~i~~p~NP--------------tG~~~~~~~~~~l~~~~~ 196 (391)
T PRK08361 142 IRIPLREENEFQPDPDELLELITK-R-TRMIVINYPNNP--------------TGATLDKEVAKAIADIAE 196 (391)
T ss_pred EEEecCCccCCCCCHHHHHHhccc-c-cEEEEEeCCCCC--------------CCcCcCHHHHHHHHHHHH
Confidence 6652 11 11122 223222222 2 346777767888 578888776676666543
No 173
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=20.45 E-value=3.9e+02 Score=25.74 Aligned_cols=51 Identities=12% Similarity=0.161 Sum_probs=31.9
Q ss_pred ceEEEeecCCcchHHHHHHHHHHHHHCCCeEEEeCCCcccchhHHHHHHHHcC
Q psy5979 49 SVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQ 101 (499)
Q Consensus 49 ~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~g~~pTP~~~fav~~~~ 101 (499)
.+||+|.=.-..=..=++.++.-|.++|++|+|++ .-+|.--+.=++++++
T Consensus 105 g~vVigtveGDvHdIGk~iV~~ml~~aGfevidLG--~dvP~e~fve~a~e~k 155 (227)
T COG5012 105 GKVVIGTVEGDVHDIGKNIVATMLEAAGFEVIDLG--RDVPVEEFVEKAKELK 155 (227)
T ss_pred ceEEEEeecccHHHHHHHHHHHHHHhCCcEEEecC--CCCCHHHHHHHHHHcC
Confidence 56777654332223345666667789999999994 3465555555566654
No 174
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=20.43 E-value=2.1e+02 Score=28.02 Aligned_cols=58 Identities=17% Similarity=0.302 Sum_probs=37.8
Q ss_pred cEEEEcCCCCCChHHHHHHHHH----hcCCCcceeeecccCCCCCC--CCCCCCcccHHHHHHHHH
Q psy5979 213 FKLLINAMHGVTGPYVKKIFLE----ELGAQPDNAVNTTPLPDFGG--HHPDPNLTYAADLVQAMQ 272 (499)
Q Consensus 213 lkVvvD~~~G~~~~~~~~il~~----~lG~~~~~~v~~~~d~~F~~--~~p~P~~~~l~~l~~~v~ 272 (499)
+||.+..-.|+|.+.+..+|+. +-|.+|. ++.+.||.+.|. ..+.| .+.+....+.++
T Consensus 1 mkIaI~GKGG~GKTtiaalll~~l~~~~~~~VL-vVDaDpd~nL~~~LGve~~-~~~lg~~~e~~~ 64 (255)
T COG3640 1 MKIAITGKGGVGKTTIAALLLKRLLSKGGYNVL-VVDADPDSNLPEALGVEEP-MKYLGGKRELLK 64 (255)
T ss_pred CeEEEecCCCccHHHHHHHHHHHHHhcCCceEE-EEeCCCCCChHHhcCCCCC-CcccccHHHHHH
Confidence 4788899999988877777323 4457775 689999888775 33443 334444444444
No 175
>PF01520 Amidase_3: N-acetylmuramoyl-L-alanine amidase; InterPro: IPR002508 The cell wall envelope of Gram-positive bacteria is a macromolecular, exoskeletal organelle that is assembled and turned over at designated sites. The cell wall also functions as a surface organelle that allows Gram-positive pathogens to interact with their environment, in particular the tissues of the infected host. All of these functions require that surface proteins and enzymes be properly targeted to the cell wall envelope. Two basic mechanisms, cell wall sorting and targeting, have been identified. Cell well sorting is the covalent attachment of surface proteins to the peptidoglycan via a C-terminal sorting signal that contains a consensus LPXTG sequence. More than 100 proteins that possess cell wall-sorting signals, including the M proteins of Streptococcus pyogenes, protein A of Staphylococcus aureus, and several internalins of Listeria monocytogenes, have been identified. Cell wall targeting involves the noncovalent attachment of proteins to the cell surface via specialised binding domains. Several of these wall-binding domains appear to interact with secondary wall polymers that are associated with the peptidoglycan, for example teichoic acids and polysaccharides. Proteins that are targeted to the cell surface include muralytic enzymes such as autolysins, lysostaphin, and phage lytic enzymes. Other examples for targeted proteins are the surface S-layer proteins of bacilli and clostridia, as well as virulence factors required for the pathogenesis of L. monocytogenes (internalin B) and Streptococcus pneumoniae (PspA) infections []. Autolysin 3.5.1.28 from EC hydrolyses the link between N-acetylmuramoyl residues and L-amino acid residues in certain bacterial cell wall glycopeptides.; GO: 0008745 N-acetylmuramoyl-L-alanine amidase activity, 0009253 peptidoglycan catabolic process; PDB: 3QAY_A 3CZX_A 1JWQ_A 1XOV_A 3NE8_A.
Probab=20.03 E-value=4.9e+02 Score=23.18 Aligned_cols=80 Identities=15% Similarity=0.055 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHCCCeEEEeCCCcccchhH-HHHHHHHcCCccceEE--cCCCCCCCCCCCceeEEEc---CCCCCCCh
Q psy5979 62 DVAVDKIIKISAANGVAKLIVGQNGILSTPA-VSALIRKHQVTGGIVL--TASHNPGGPDNDFGIKFNT---SNGGPAPD 135 (499)
Q Consensus 62 ~~~a~a~a~gL~s~Gi~V~~~~~~g~~pTP~-~~fav~~~~~~gGI~I--TaSHNP~~~~~~nGiK~~~---~~G~~~~~ 135 (499)
..++..+..-|.+.|++|+...+...-++.. -.-.+...+++.-|-| -++.++ ..+|+.++. ..+...+.
T Consensus 27 l~ia~~l~~~L~~~g~~V~~tr~~d~~~~l~~R~~~an~~~ad~~isiH~na~~~~----~~~G~ev~~~~~~~~~~~s~ 102 (175)
T PF01520_consen 27 LDIALRLKKELEKHGIKVYLTRDNDSDVSLQERAALANSWGADLFISIHFNASNGG----AARGTEVYYSYNSSNSAKSK 102 (175)
T ss_dssp HHHHHHHHHHHHHTTEEEEESSSSSHCCCHHHHHHHHHHTTSSEEEEEEEE-SSST----T--SEEEEEHHHCCCCHHHH
T ss_pred HHHHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhcccCEEEEEeecCccCC----cCCceEEEEecccccchhhH
Confidence 5688999999999999999874221111111 1223345666644433 355555 468999988 55555555
Q ss_pred hHHHHHHHHH
Q psy5979 136 AVTENIYKIT 145 (499)
Q Consensus 136 ~~~~~Ie~~~ 145 (499)
...+.|.+.+
T Consensus 103 ~lA~~i~~~l 112 (175)
T PF01520_consen 103 KLAKSIQKEL 112 (175)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 176
>PF02007 MtrH: Tetrahydromethanopterin S-methyltransferase MtrH subunit; InterPro: IPR023467 In archaea the enzyme tetrahydromethanopterin S-methyltransferase is composed of eight subunits, MtrA-H. The enzyme is a membrane- associated enzyme complex which catalyzes an energy-conserving, sodium-ion-translocating step in methanogenesis from hydrogen and carbon dioxide []. Subunit MtrH catalyzes the methylation reaction and was shown to exhibit methyltetrahydromethanopterin:cob(I)alamin methyltransferase activity []. CH3-H4MPT + cob(I)alamin --> H4MPT + CH3-cob(III)alamin (H4MPT = tetrahydromethanopterin); GO: 0008168 methyltransferase activity, 0006730 one-carbon metabolic process
Probab=20.03 E-value=3.4e+02 Score=27.25 Aligned_cols=75 Identities=19% Similarity=0.200 Sum_probs=45.3
Q ss_pred CcHHHHHHHHHhhcCchhHHhhhcCCCCCCCcEEEEcCCCCCChHHHHHHHHHhcCCCcceeeecccCCCCCCCCCCCCc
Q psy5979 182 DSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINAMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDPNL 261 (499)
Q Consensus 182 d~~~~Y~~~l~~~i~~~~i~~~~~~~~~~~~lkVvvD~~~G~~~~~~~~il~~~lG~~~~~~v~~~~d~~F~~~~p~P~~ 261 (499)
+....|++++.+. .+..+.+|+..+.+.--.-+.. .++|+.-- ++.+..+ +.-.+
T Consensus 77 EA~~kYidFv~~i----------------~d~PfliDS~~~~~R~~a~~yv-~E~Gl~dR-~IYNSIn-------~~~~~ 131 (296)
T PF02007_consen 77 EAMEKYIDFVAEI----------------TDSPFLIDSSSPEVRIAAAKYV-TEIGLADR-AIYNSIN-------MSIED 131 (296)
T ss_pred HHHHHHHHHHhhc----------------CCCCeEecCCCHHHHHHHHHHH-hhhchhhh-hhhhcCC-------CCCCH
Confidence 4577899887764 2467899998887665555666 78887532 3433222 22233
Q ss_pred ccHHHHHHHHHhC--CCcEEEeeCCC
Q psy5979 262 TYAADLVQAMQAG--DFDLGAAFDGD 285 (499)
Q Consensus 262 ~~l~~l~~~v~~~--~adlgia~D~D 285 (499)
++++ .+++. ++.+.++||+.
T Consensus 132 ~Eie----aLkes~i~aaIvLaFn~~ 153 (296)
T PF02007_consen 132 EEIE----ALKESDIDAAIVLAFNPM 153 (296)
T ss_pred HHHH----HHHhcCCCEEEEEecCCC
Confidence 3333 34444 45578888876
Done!