Query psy5979
Match_columns 499
No_of_seqs 182 out of 2102
Neff 7.8
Searched_HMMs 29240
Date Fri Aug 16 23:28:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5979.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5979hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pmg_A Alpha-D-glucose-1,6-bis 100.0 3.6E-89 1.2E-93 737.8 38.5 459 2-489 33-507 (561)
2 2f7l_A 455AA long hypothetical 100.0 1E-82 3.4E-87 674.3 39.4 408 29-494 21-431 (455)
3 1wqa_A Phospho-sugar mutase; a 100.0 2.9E-82 9.8E-87 670.8 37.6 417 17-494 11-429 (455)
4 1tuo_A Putative phosphomannomu 100.0 1.6E-81 5.3E-86 666.0 36.0 406 30-494 31-441 (464)
5 3uw2_A Phosphoglucomutase/phos 100.0 2.7E-80 9.1E-85 657.3 30.8 417 11-496 27-455 (485)
6 1kfi_A Phosphoglucomutase 1; p 100.0 1.5E-79 5.1E-84 666.1 36.6 443 35-490 43-521 (572)
7 3na5_A Phosphoglucomutase; iso 100.0 1.6E-79 5.5E-84 663.1 35.6 426 35-491 89-538 (570)
8 1p5d_X PMM, phosphomannomutase 100.0 7.9E-79 2.7E-83 645.8 37.1 400 29-495 30-432 (463)
9 2z0f_A Putative phosphoglucomu 100.0 1.2E-76 4E-81 638.2 32.9 428 31-493 45-496 (524)
10 3pdk_A Phosphoglucosamine muta 100.0 2.6E-77 9E-82 632.9 27.2 407 17-496 32-443 (469)
11 3i3w_A Phosphoglucosamine muta 100.0 3.6E-75 1.2E-79 613.2 27.7 391 29-496 22-419 (443)
12 4hjh_A Phosphomannomutase; str 100.0 1.2E-73 4E-78 608.2 33.5 395 32-492 30-448 (481)
13 2dka_A Phosphoacetylglucosamin 100.0 6.4E-53 2.2E-57 454.5 7.2 364 97-496 51-524 (544)
14 1wjw_A Phosphoacetylglucosamin 97.5 2.1E-06 7.2E-11 72.4 -5.0 32 464-496 43-74 (112)
15 2dka_A Phosphoacetylglucosamin 97.1 0.00039 1.3E-08 74.5 5.7 52 48-102 132-184 (544)
16 1o1x_A Ribose-5-phosphate isom 85.9 2 7E-05 37.5 7.3 59 49-109 13-77 (155)
17 2vvp_A Ribose-5-phosphate isom 84.1 2.4 8.3E-05 37.3 6.9 59 50-110 5-70 (162)
18 2vvr_A Ribose-5-phosphate isom 83.5 2 6.8E-05 37.3 6.1 31 50-82 3-33 (149)
19 3s5p_A Ribose 5-phosphate isom 81.9 3.6 0.00012 36.3 7.1 32 49-82 22-53 (166)
20 3he8_A Ribose-5-phosphate isom 80.3 5.5 0.00019 34.6 7.6 46 50-97 2-49 (149)
21 3ph3_A Ribose-5-phosphate isom 77.6 7.1 0.00024 34.5 7.6 48 48-97 20-69 (169)
22 1kfi_A Phosphoglucomutase 1; p 72.5 5.5 0.00019 42.4 6.8 68 2-70 37-109 (572)
23 1p5d_X PMM, phosphomannomutase 66.7 2.1 7.3E-05 44.3 2.0 33 2-34 26-61 (463)
24 2yxb_A Coenzyme B12-dependent 65.1 15 0.00052 32.0 7.0 66 38-109 8-76 (161)
25 4dik_A Flavoprotein; TM0755, e 64.5 18 0.00063 36.6 8.5 72 36-108 253-325 (410)
26 2ppw_A Conserved domain protei 63.1 10 0.00035 34.9 5.6 34 49-82 4-39 (216)
27 3k7p_A Ribose 5-phosphate isom 60.5 17 0.00059 32.3 6.4 46 50-97 24-73 (179)
28 2vvr_A Ribose-5-phosphate isom 60.3 19 0.00066 31.1 6.5 65 213-287 2-70 (149)
29 2z0f_A Putative phosphoglucomu 60.0 5.3 0.00018 42.0 3.5 67 2-70 39-113 (524)
30 3sgw_A Ribose 5-phosphate isom 59.9 21 0.00072 31.9 6.8 44 49-97 30-81 (184)
31 3ph3_A Ribose-5-phosphate isom 59.3 14 0.00047 32.7 5.5 67 211-287 19-89 (169)
32 3ono_A Ribose/galactose isomer 58.9 13 0.00043 34.2 5.4 30 50-82 5-39 (214)
33 3he8_A Ribose-5-phosphate isom 57.5 16 0.00054 31.6 5.5 65 213-287 1-69 (149)
34 3uw2_A Phosphoglucomutase/phos 56.5 4.5 0.00015 42.2 2.2 33 2-34 40-75 (485)
35 4em8_A Ribose 5-phosphate isom 54.4 18 0.00062 31.2 5.3 32 50-83 9-40 (148)
36 3na5_A Phosphoglucomutase; iso 54.3 5.1 0.00017 42.7 2.2 69 2-70 79-153 (570)
37 2ppw_A Conserved domain protei 52.6 35 0.0012 31.3 7.2 69 212-287 3-79 (216)
38 1tuo_A Putative phosphomannomu 51.6 5.9 0.0002 41.0 2.2 42 2-43 26-73 (464)
39 2f7l_A 455AA long hypothetical 51.2 9.5 0.00033 39.3 3.7 42 2-43 17-62 (455)
40 4hjh_A Phosphomannomutase; str 50.3 6.6 0.00023 40.8 2.3 83 3-92 24-130 (481)
41 3s5p_A Ribose 5-phosphate isom 49.7 14 0.00048 32.5 3.9 68 212-287 21-90 (166)
42 1y80_A Predicted cobalamin bin 49.2 42 0.0014 30.2 7.4 59 48-112 88-149 (210)
43 3k7p_A Ribose 5-phosphate isom 48.8 27 0.00092 31.1 5.6 66 212-287 22-93 (179)
44 1ccw_A Protein (glutamate muta 46.8 42 0.0014 28.2 6.5 56 49-110 4-62 (137)
45 2i2x_B MTAC, methyltransferase 46.6 48 0.0016 31.1 7.5 62 47-114 122-186 (258)
46 3fni_A Putative diflavin flavo 43.8 70 0.0024 27.3 7.7 36 47-82 3-39 (159)
47 3pdk_A Phosphoglucosamine muta 43.4 9.1 0.00031 39.7 2.0 33 2-34 38-74 (469)
48 3i3w_A Phosphoglucosamine muta 43.3 7.3 0.00025 40.0 1.3 33 2-34 18-54 (443)
49 3qay_A Endolysin; amidase A/B 41.5 64 0.0022 28.5 7.1 67 213-287 2-89 (180)
50 1wqa_A Phospho-sugar mutase; a 40.9 22 0.00074 36.5 4.4 33 2-34 17-54 (455)
51 2vvp_A Ribose-5-phosphate isom 39.0 33 0.0011 30.0 4.6 66 212-287 3-73 (162)
52 3ezx_A MMCP 1, monomethylamine 38.2 87 0.003 28.4 7.7 55 48-108 92-149 (215)
53 3brc_A Conserved protein of un 37.6 54 0.0018 27.9 5.4 82 213-301 37-124 (156)
54 1o1x_A Ribose-5-phosphate isom 37.1 64 0.0022 27.9 6.1 69 211-287 11-81 (155)
55 3sgw_A Ribose 5-phosphate isom 37.0 41 0.0014 30.0 4.9 68 211-287 28-101 (184)
56 3ono_A Ribose/galactose isomer 36.7 76 0.0026 29.0 6.8 68 212-287 3-78 (214)
57 3c5y_A Ribose/galactose isomer 33.0 74 0.0025 29.4 6.1 61 47-110 18-92 (231)
58 1t6t_1 Putative protein; struc 28.6 78 0.0027 26.1 5.0 45 35-79 48-93 (118)
59 3hly_A Flavodoxin-like domain; 26.2 1.6E+02 0.0053 25.0 6.9 32 51-82 3-35 (161)
60 3ly1_A Putative histidinol-pho 26.1 4.1E+02 0.014 24.8 11.3 112 5-142 54-167 (354)
61 3bul_A Methionine synthase; tr 25.8 1.2E+02 0.0042 32.1 7.1 59 48-112 98-159 (579)
62 3pmg_A Alpha-D-glucose-1,6-bis 25.6 28 0.00094 36.9 2.2 61 6-70 41-104 (561)
63 1xrs_B D-lysine 5,6-aminomutas 25.4 68 0.0023 30.3 4.6 71 37-110 109-188 (262)
64 4b1b_A TRXR, thioredoxin reduc 25.4 1.6E+02 0.0056 30.7 8.1 64 14-81 216-282 (542)
65 3dzz_A Putative pyridoxal 5'-p 24.8 2.7E+02 0.0091 26.5 9.3 118 5-147 65-191 (391)
66 3euc_A Histidinol-phosphate am 23.2 4.2E+02 0.014 24.9 10.3 113 5-144 70-185 (367)
67 1mio_B Nitrogenase molybdenum 22.8 3.5E+02 0.012 27.3 9.9 69 4-82 273-341 (458)
68 3nra_A Aspartate aminotransfer 22.5 5E+02 0.017 24.7 11.6 78 47-147 125-210 (407)
69 3o94_A Nicotinamidase; hydrola 22.2 1.4E+02 0.0046 27.1 5.9 75 35-113 131-206 (211)
70 4amu_A Ornithine carbamoyltran 21.7 1.4E+02 0.0049 29.5 6.3 63 48-114 180-245 (365)
71 2h54_A Caspase-1; allosteric s 20.9 3.3E+02 0.011 23.8 8.0 62 50-114 46-120 (178)
72 2bc0_A NADH oxidase; flavoprot 20.2 2.8E+02 0.0097 28.0 8.6 59 18-80 192-254 (490)
73 3c5y_A Ribose/galactose isomer 20.0 2.2E+02 0.0077 26.2 6.8 67 211-287 18-95 (231)
No 1
>3pmg_A Alpha-D-glucose-1,6-bisphosphate; phosphoglucomutase, phosphotransferase; HET: SEP; 2.40A {Oryctolagus cuniculus} SCOP: c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1 PDB: 1c4g_A* 1jdy_A* 1lxt_A 1vkl_A* 1c47_A*
Probab=100.00 E-value=3.6e-89 Score=737.79 Aligned_cols=459 Identities=56% Similarity=1.002 Sum_probs=390.9
Q ss_pred CchhhHHHHHHHhhcCCCCCCeEEEeCCcccccchhhHHHHHhhCCCceEEEeecCCcchHHHHHHHHHHHHHCCCeEEE
Q psy5979 2 HYTENFIQSILTALGDKLKGSVLVVGGDGRYFGDVAVDKIIKISGIRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLI 81 (499)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~ 81 (499)
+||++|+|+|+.|+++-. . .+++|+||||+|.+|++|+++++++|+++|++|++
T Consensus 33 ~~t~~f~~~l~~A~g~~~--------------~------------~g~~VvVG~D~R~~s~~~~~~~a~~l~a~Gv~V~~ 86 (561)
T 3pmg_A 33 NYAENFIQSIISTVEPAQ--------------R------------QEATLVVGGDGRFYMKEAIQLIVRIAAANGIGRLV 86 (561)
T ss_dssp THHHHHHHHHHHTSCGGG--------------T------------TTCEEEEEECCCTTHHHHHHHHHHHHHHTTCCEEE
T ss_pred CccHHHHHHHHHHHHhhh--------------c------------CCCEEEEEeCCCccHHHHHHHHHHHHHHCCCEEEE
Confidence 799999999999875311 1 34568888888888899999999999999999999
Q ss_pred eCCCcccchhHHHHHHHHcCCccceEEcCCCCCCCCCCCceeEEEcCCCCCCChhHHHHHHHHHHhhhccCcCCCccccc
Q psy5979 82 VGQNGILSTPAVSALIRKHQVTGGIVLTASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITTQIKTYSIVPDLKVDI 161 (499)
Q Consensus 82 ~~~~g~~pTP~~~fav~~~~~~gGI~ITaSHNP~~~~~~nGiK~~~~~G~~~~~~~~~~Ie~~~~~~~~~~~~~~~~~~~ 161 (499)
++++|++|||+++|+++++++++||||||||||++|++||||||++++|.+++++.+++|++++.++++|.+++....++
T Consensus 87 ~~~~g~~pTP~vs~av~~~~a~gGImITASHNP~~~~~~nGiK~~~~~G~~~~~~~~~~Ie~~~~~i~~~~~~~~~~~~~ 166 (561)
T 3pmg_A 87 IGQNGILSTPAVSCIIRKIKAIGGIILTASHNPGGPNGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDLKVDL 166 (561)
T ss_dssp EEEEEECCHHHHHHHHHHHTCSEEEEECCTTSCCSTTSEEEEEEEETTSSBCCHHHHHHHHHHHHHCCEEEECTTCCCCT
T ss_pred ecCCCccCHHHHHHHHHHhcCCeEEEEEeCCCCCCCCCcceEEEEeCCCCcCCHHHHHHHHHHHHhhhhhccccccccch
Confidence 84448999999999999999999999999999987778999999999999999999999999988766665443323345
Q ss_pred ccccCccccccC--CcceEEEeCcHHHHHHHHHhhcCchhHHhhhcCCCCCCCcEEEEcCCCCCChHHHHHHHHHhcCCC
Q psy5979 162 TSIGSSSYEVDG--AQFQVDVIDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINAMHGVTGPYVKKIFLEELGAQ 239 (499)
Q Consensus 162 ~~ig~~~~~~~~--~~~~~~~~d~~~~Y~~~l~~~i~~~~i~~~~~~~~~~~~lkVvvD~~~G~~~~~~~~il~~~lG~~ 239 (499)
+.+|+..+.... ....++..|..+.|++.+++.++.+.|++.+.+ .+++||++||+||+++.+++++|+++|||+
T Consensus 167 ~~ig~~~~~~~~~~~~~~~~~~d~~~~Yi~~l~~~~d~~~i~~~~~~---~~~lkIvvD~~~Ga~~~~~~~il~~~lG~~ 243 (561)
T 3pmg_A 167 GVLGKQQFDLENKFKPFTVEIVDSVEAYATMLRNIFDFNALKELLSG---PNRLKIRIDAMHGVVGPYVKKILCEELGAP 243 (561)
T ss_dssp TSCEEEEECCTTCSSCEEEEEECSSHHHHHHHHTTSCHHHHHHHHHS---TTCCCEEEECTTSTTHHHHHHHHTTTTCCC
T ss_pred hhhccccccccccccCCceEecChHHHHHHHHHHhcChHHhhhhhcc---CCCcEEEEECCCCchHHHHHHHHHHHcCCC
Confidence 556553322111 123456668889999999999998888764321 147999999999999999999765899999
Q ss_pred cceeeecccCCCCCCCCCCCCcccHHHHHHHHHhCCCcEEEeeCCCCCeeEEEccCceEeCCCcHHHHHHHHHhcCchhh
Q psy5979 240 PDNAVNTTPLPDFGGHHPDPNLTYAADLVQAMQAGDFDLGAAFDGDGDRNMVLGKKAFFVNPSDSLAVLAAHLDSIPYFK 319 (499)
Q Consensus 240 ~~~~v~~~~d~~F~~~~p~P~~~~l~~l~~~v~~~~adlgia~D~DgDRl~vvd~~G~~l~~d~~~~lla~~ll~~~~~~ 319 (499)
++.++|+.||++||+++|+|+++++.+|.+.|++.++|+||++||||||++++|++|++++++++++|++.+++..++++
T Consensus 244 v~~~v~~~pd~~F~~~~P~P~~~~~~~L~~~v~~~~aDlgia~DgDaDR~~ivd~~G~~v~~~~~lalla~~l~~~~~~~ 323 (561)
T 3pmg_A 244 ANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKSGEHDFGAAFDGDGDRNMILGKHGFFVNPSDSVAVIAANIFSIPYFQ 323 (561)
T ss_dssp GGGEESCSCCTTGGGSCCCCSTTTTHHHHHHHHTSCCSEEEEECTTSSCEEEEEGGGCBCCHHHHHHHHHHTGGGSHHHH
T ss_pred eEEEECCEECCCCCCCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCCeEEEEeCCCcEECccHHHHHHHHHHHhhhhhH
Confidence 86458999999999999999999999999999999999999999999999999999999999999999999986544444
Q ss_pred hcCccceeeeccchHHHHHHHHHCCCcEEEeecchhHHhhhhhccCceEEEEecCCCCCCCccCCchHHHHHHHHHHHHH
Q psy5979 320 KTGVKGYARSMPTGAAVDRVAKANNKELFEVPTGWKYFGNLMDAGRLSLCGEESFGTGSDHIREKDGIWAVLAWLSVVEH 399 (499)
Q Consensus 320 ~~~~~~vv~~~~ss~~l~~ia~~~g~~v~~t~tG~k~i~~~~~~~~~~~g~Eesgg~~~~~~~~~Dgi~a~l~lle~la~ 399 (499)
.++...|+.|++||.+++++|+++|++++|||||||||+++|.+.+++||||||||++++|.+++|||++++++||+|+.
T Consensus 324 ~~~~~~vv~tv~Ss~~ld~va~~~G~~v~~t~vG~k~i~~~m~~~~~~~gGEeS~G~~~~~~~~kDGi~aal~~le~la~ 403 (561)
T 3pmg_A 324 QTGVRGFARSMPTSGALDRVANATKIALYETPTGWKFFGNLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILAT 403 (561)
T ss_dssp HHCCCCEEEETTSCTHHHHHHHTSSSCEEEECSSHHHHHHHHHTTCCSEEEETTTEEEETTSSSCCHHHHHHHHHHHHHH
T ss_pred hcCCCeEEEEechHHHHHHHHHHcCCCEEEEeccHHHHHHHhccCCeEEEEEecCCcCCCeeecCCHHHHHHHHHHHHHH
Confidence 44445699999999999999999999999999999999999999999999999999878999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHhCCceEeeeccccCCchhHHHHHHHHHhhcCCCCcccccccCCC----------Ccce----ecc
Q psy5979 400 TGKPVEEILKSHWKQYGRNYFTRYDYENCSAAPCNQMMDELEKKVSAPEFKGVTLSAEG----------RSGS----WWR 465 (499)
Q Consensus 400 ~~~~L~ell~~lp~~~g~~~~~~~~~~~~~~~~k~~vm~~l~~~~~~~~~~g~~~~~~~----------~~~~----~~v 465 (499)
++++|+|+++++|++||++++.+.++..|+|+.++++|++|++....+.+.|.++...+ ..|. ..+
T Consensus 404 ~g~~lsell~~l~~~yG~~~~~r~d~~~~~~~~~~~vm~~L~~~~~~~~~~g~~~~~~~~~~~v~~~~~f~~~dpvd~~v 483 (561)
T 3pmg_A 404 RKQSVEDILKDHWHKFGRNFFTRYDYEEVEAEGATKMMKDLEALMFDRSFVGKQFSANDKVYTVEKADNFEYHDPVDGSV 483 (561)
T ss_dssp HCSCHHHHHHHHHHHHCEEEEEEEEEEEECHHHHHHHHHHHHHHHHSTTSTTCEEEETTEEEEEEEEEECCEECTTTCCE
T ss_pred hCCCHHHHHHHHHHHhCcccccccccccCCHHHHHHHHHHHHhcCCcccccccccccccccceeeecccccccCcccCcc
Confidence 99999999999999999999999998789999999999999987644455555443211 1111 158
Q ss_pred cCCCeEEEEeeCCeEEEEeecCCc
Q psy5979 466 QEKQGVRSAISQTGLVHIQIIRNR 489 (499)
Q Consensus 466 ~~iDGik~~~~d~~Wvlir~s~~~ 489 (499)
+++||+|+.|+||+|+|||||++.
T Consensus 484 ~~~dGvri~~~dgswvlvRpSGte 507 (561)
T 3pmg_A 484 SKNQGLRLIFADGSRIIFRLSGTG 507 (561)
T ss_dssp ECCCCEEEEETTSCEEEEEEEECS
T ss_pred ccCceEEEEeCCCCEEEEecCCCC
Confidence 899999999999999999999998
No 2
>2f7l_A 455AA long hypothetical phospho-sugar mutase; phosphomannomutase, phosphoglucomutase, isomerase; 2.80A {Sulfolobus tokodaii}
Probab=100.00 E-value=1e-82 Score=674.26 Aligned_cols=408 Identities=18% Similarity=0.199 Sum_probs=357.4
Q ss_pred CcccccchhhHHHHHhhCCCceEEEeecCCcchHHHHHHHHHHHHHCCCeEEEeCCCcccchhHHHHHHHHcCCccceEE
Q psy5979 29 DGRYFGDVAVDKIIKISGIRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQVTGGIVL 108 (499)
Q Consensus 29 ~~~~~~~~a~~~~~~~~~~~~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~g~~pTP~~~fav~~~~~~gGI~I 108 (499)
+..+..+.|||++++ .+++|+||||+|.+|++|++++++||+++|++|+++ |.+|||+++|++++++|++||||
T Consensus 21 ~~v~~~~~a~~~~l~---~~~~VvIG~D~R~ss~~~~~a~a~gl~~~G~~V~~~---g~~pTP~~~~av~~~~~~~GImI 94 (455)
T 2f7l_A 21 ELVLKLSKAIGTFFG---KNSKILVGRDVRAGGDMLVKIVEGGLLSVGVEVYDG---GMAPTPALQYAVKTLGYDGGVVI 94 (455)
T ss_dssp HHHHHHHHHHHHHHC---TTCEEEEEECSCTTHHHHHHHHHHHHHHTTCEEEEE---EECCHHHHHHHHHHHCCSEEEEE
T ss_pred HHHHHHHHHHHHHHc---cCCeEEEEECCCCCHHHHHHHHHHHHHHCCCcEEEc---CCCCcHHHHHHHHhcCCCeEEEE
Confidence 444455788999987 457899999999999999999999999999999998 99999999999999999999999
Q ss_pred cCCCCCCCCCCCceeEEEcCCCCCCChhHHHHHHHHHHhhhccCcCCCccccccccc-CccccccCCcceEEEeCcHHHH
Q psy5979 109 TASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITTQIKTYSIVPDLKVDITSIG-SSSYEVDGAQFQVDVIDSVEVY 187 (499)
Q Consensus 109 TaSHNP~~~~~~nGiK~~~~~G~~~~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~ig-~~~~~~~~~~~~~~~~d~~~~Y 187 (499)
|||||| ++||||||++++|.+++++.+++|++.+.+ +++.+ ..++.+| .. ....+..+.|
T Consensus 95 TASHNP---~~~NGiK~~~~~G~~~~~~~~~~I~~~~~~-~~~~~-----~~~~~~g~~~----------~~~~~~~~~Y 155 (455)
T 2f7l_A 95 TASHNP---APYNGIKVVDKDGIEIRREKENEIEDLFFT-ERFNT-----IEWSSLTTEV----------KREDRVISTY 155 (455)
T ss_dssp CCTTSC---TTEEEEEEECTTSSBCCHHHHHHHHHHHHH-TCCCC-----CCGGGCCCCC----------EECCCHHHHH
T ss_pred EcCCCC---hHHCEEEEECCCCCCCCHHHHHHHHHHHhc-CCCCc-----CchhcCCcee----------ecccchHHHH
Confidence 999999 899999999999999999999999998865 45432 2233344 31 1233678999
Q ss_pred HHHHHhhcCchhHHhhhcCCCCCCCcEEEEcCCCCCChHHHHHHHHHhcCCCcceeeecccCCCCCCCCCCCCcccHHHH
Q psy5979 188 LQLMKEIFDFPKLQSLIKGSSGRPPFKLLINAMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDPNLTYAADL 267 (499)
Q Consensus 188 ~~~l~~~i~~~~i~~~~~~~~~~~~lkVvvD~~~G~~~~~~~~il~~~lG~~~~~~v~~~~d~~F~~~~p~P~~~~l~~l 267 (499)
++.+++.++.+.++. +++|||+||+||+++.+++++| ++|||+++ .++++|||+||+++|+|+++++..+
T Consensus 156 ~~~l~~~~~~~~i~~--------~~lkivvd~~~G~~~~~~~~~l-~~lG~~v~-~~~~~pDg~F~~~~p~p~~~~l~~l 225 (455)
T 2f7l_A 156 VNGILSHVDIEKIKK--------KNYKVLIDPANSVGALSTPLVA-RALGCKIY-TINGNLDPLFSARQPEPTFDSLKET 225 (455)
T ss_dssp HHHHHTTSCHHHHHH--------HCCEEEEECTTTGGGGTHHHHH-HHTTCEEE-EBSCSCCTTCTTSCSSCCTTTSHHH
T ss_pred HHHHHhhcChhhccc--------CCCEEEEECCCchHHHHHHHHH-HHcCCEEE-EECCcCCCCCCCCCcCcchHHHHHH
Confidence 999999988766654 5899999999999999999999 99999986 6999999999998999999999999
Q ss_pred HHHHHhCCCcEEEeeCCCCCeeEEEccCceEeCCCcHHHHHHHHHhcCchhhhcCccceeeeccchHHHHHHHHHCCCcE
Q psy5979 268 VQAMQAGDFDLGAAFDGDGDRNMVLGKKAFFVNPSDSLAVLAAHLDSIPYFKKTGVKGYARSMPTGAAVDRVAKANNKEL 347 (499)
Q Consensus 268 ~~~v~~~~adlgia~D~DgDRl~vvd~~G~~l~~d~~~~lla~~ll~~~~~~~~~~~~vv~~~~ss~~l~~ia~~~g~~v 347 (499)
.+.+++.++|+|+++||||||++++|++|+++++|++++|++.++++. ...+...||.|++||.+++++|+++|+++
T Consensus 226 ~~~v~~~~adlgia~DgDaDR~~~vd~~g~~l~gd~i~~lla~~l~~~---~~~~~~~vv~tv~ss~~l~~~a~~~g~~~ 302 (455)
T 2f7l_A 226 AEVVKTLKVDLGVAHDGDADRAIFIDSEGRVQWGDRSGTLLSYWASVK---NPKAIKKIVTAVSSSSLVEEYLSKYNIQV 302 (455)
T ss_dssp HHHHHHTTCSEEEECCTTSCCCEEEETTSCBCCHHHHHHHHHHHHHHT---CTTSCSEEEEETTSCTHHHHHHHTTTCEE
T ss_pred HHHHHHcCCCEEEEECCCCCeEEEEcCCCeEEChHHHHHHHHHHHHHh---CccCCCeEEEEecccHHHHHHHHHcCCEE
Confidence 999999999999999999999999999999999999999999999853 10122469999999999999999999999
Q ss_pred EEeecchhHHhhhhhccCceEEEEecCCC-CCCCccCCchHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCceEeeeccc
Q psy5979 348 FEVPTGWKYFGNLMDAGRLSLCGEESFGT-GSDHIREKDGIWAVLAWLSVVEHTGKPVEEILKSHWKQYGRNYFTRYDYE 426 (499)
Q Consensus 348 ~~t~tG~k~i~~~~~~~~~~~g~Eesgg~-~~~~~~~~Dgi~a~l~lle~la~~~~~L~ell~~lp~~~g~~~~~~~~~~ 426 (499)
++|+||||||+++|.+.+++||||||||+ ++++.+++||++++++++|+++.+|+||+|+++ +||++++.+.++
T Consensus 303 ~~t~~G~k~i~~~m~~~~~~~ggE~Sgg~~~~~~~~~~Dgi~a~l~~le~~a~~g~~L~ell~----~~~~~~~~~~~v- 377 (455)
T 2f7l_A 303 DWTKVGSVDIAHKVADENALAGFEENGGFMYPPHQYVRDGAMSFALMLELLANENVSSAELFD----RLPKYYLVKTKV- 377 (455)
T ss_dssp EEECSCHHHHHHHHHHTTCSEEEETTEEEEBTTTBSSCCHHHHHHHHHHHHHHHTCCHHHHHH----TSCCCEEEEEEE-
T ss_pred EEEcCcHHHHHHHHHhcCcEEEEcCcCcEEECCcCCCCCHHHHHHHHHHHHHhhCCCHHHHHH----hCCCCeeeeEeE-
Confidence 99999999999999999999999999997 789999999999999999999999999999994 467766666555
Q ss_pred cCCchhHH-HHHHHHHhhcCCCCcccccccCCCCcceecccCCCeEEEEeeCCeEEEEeecCCcccccc
Q psy5979 427 NCSAAPCN-QMMDELEKKVSAPEFKGVTLSAEGRSGSWWRQEKQGVRSAISQTGLVHIQIIRNRQFRRH 494 (499)
Q Consensus 427 ~~~~~~k~-~vm~~l~~~~~~~~~~g~~~~~~~~~~~~~v~~iDGik~~~~d~~Wvlir~s~~~~~~~~ 494 (499)
.|+++.+. ++|++|++..... + ..++.+||+|+.|+| ||++||||++.|-=|.
T Consensus 378 ~~~~~~~~~~~~~~l~~~~~~~---~-----------~~~~~~DGlr~~~~~-gw~lvRpSgTEP~irv 431 (455)
T 2f7l_A 378 DLKPGLMVEEIYKKILEVYSTS---S-----------VKAITIDGVKIIGKD-FWFLVRKSGTEPIIRI 431 (455)
T ss_dssp ECCTTCCHHHHHHHHHHHHCCT---T-----------SEEECSSSEEEEETT-EEEEEEECSSSSEEEE
T ss_pred EcCcHHHHHHHHHHHHHhchhc---c-----------cccccCceEEEEeCC-cEEEEeeCCCCcEEEE
Confidence 69887777 8999998875431 1 358899999999988 7999999999995443
No 3
>1wqa_A Phospho-sugar mutase; alpha-beta protein, unphosphorylated form, enzyme-metal COMP isomerase; 2.00A {Pyrococcus horikoshii}
Probab=100.00 E-value=2.9e-82 Score=670.76 Aligned_cols=417 Identities=21% Similarity=0.308 Sum_probs=361.8
Q ss_pred CCCCCCeEEEeCCcccccchhhHHHHHhhC-CCceEEEeecCCcchHHHHHHHHHHHHHCCCeEEEeCCCcccchhHHHH
Q psy5979 17 DKLKGSVLVVGGDGRYFGDVAVDKIIKISG-IRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSA 95 (499)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~g~~pTP~~~f 95 (499)
||.-|.. +-.+..+..+.|||+++++.+ .+++|+||||+|.+|++|++++++||+++|++|+++ |.+|||+++|
T Consensus 11 RG~~~~~--lt~~~v~~~~~a~~~~l~~~~~~~~~VvIG~D~R~ss~~l~~a~~~gl~~~G~~V~~~---g~~pTP~l~~ 85 (455)
T 1wqa_A 11 RGIANEK--ITPEFAMKIGMAFGTLLKREGRKKPLVVVGRDTRVSGEMLKEALISGLLSVGCDVIDV---GIAPTPAVQW 85 (455)
T ss_dssp EEEBTTT--BCHHHHHHHHHHHHHHHHHTTCSSCEEEEEECSCTTHHHHHHHHHHHHHHTTCEEEEE---EECCHHHHHH
T ss_pred eeecCCC--cCHHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCcCHHHHHHHHHHHHHHcCCeEEEe---CCCChHHHHH
Confidence 4444443 222445556889999998654 356799999999999999999999999999999999 9999999999
Q ss_pred HHHHcCCccceEEcCCCCCCCCCCCceeEEEcCCCCCCChhHHHHHHHHHHhhhccCcCCCcccccccccCccccccCCc
Q psy5979 96 LIRKHQVTGGIVLTASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITTQIKTYSIVPDLKVDITSIGSSSYEVDGAQ 175 (499)
Q Consensus 96 av~~~~~~gGI~ITaSHNP~~~~~~nGiK~~~~~G~~~~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~ 175 (499)
++++++|++|||||||||| ++||||||++++|.+++++.+++|++.+.+ +++.+ ..++.+|.
T Consensus 86 ~v~~~~~~~GimITASHNP---~~~NGiK~~~~~G~~~~~~~~~~Ie~~~~~-~~~~~-----~~~~~~g~--------- 147 (455)
T 1wqa_A 86 ATKHFNADGGAVITASHNP---PEYNGIKLLEPNGMGLKKEREAIVEELFFK-EDFDR-----AKWYEIGE--------- 147 (455)
T ss_dssp HHHHTTCSEEEEECCTTSC---TTEEEEEEECTTSSBCCHHHHHHHHHHHHH-TCCCC-----CCGGGCCC---------
T ss_pred HHHhcCCCEEEEEEeCCCC---hHHCeEEEEcCCCCcCCHHHHHHHHHHHhc-CCccc-----CCccCCcc---------
Confidence 9999999999999999999 899999999999999999999999998865 34432 12333332
Q ss_pred ceEEEeCcHHHHHHHHHhhcCchhHHhhhcCCCCCCCcEEEEcCCCCCChHHHHHHHHHhcCCCcceeeecccCCCCCCC
Q psy5979 176 FQVDVIDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINAMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGGH 255 (499)
Q Consensus 176 ~~~~~~d~~~~Y~~~l~~~i~~~~i~~~~~~~~~~~~lkVvvD~~~G~~~~~~~~il~~~lG~~~~~~v~~~~d~~F~~~ 255 (499)
+...+..+.|++.+++.++.+.++. +++|||+||+||+++.+++++| ++|||+++ .+|+.|||+||++
T Consensus 148 --~~~~~~~~~Y~~~l~~~~~~~~~~~--------~~lkivvd~~nG~~~~~~~~~l-~~lG~~v~-~~~~~pdg~f~~~ 215 (455)
T 1wqa_A 148 --VRREDIIKPYIEAIKSKVDVEAIKK--------RKPFVVVDTSNGAGSLTLPYLL-RELGCKVI-TVNAQPDGYFPAR 215 (455)
T ss_dssp --EEECCCHHHHHHHHHTTSCHHHHHH--------HCCEEEEECTTSGGGGTHHHHH-HHHTCEEE-EESCSCCTTCSSS
T ss_pred --eeccchHHHHHHHHHhhCChhhccc--------CCCEEEEECCCccHHHHHHHHH-HHcCCEEE-EECCcCCCCCCCC
Confidence 3344788999999999988765654 5899999999999999999999 99999986 6999999999999
Q ss_pred CCCCCcccHHHHHHHHHhCCCcEEEeeCCCCCeeEEEccCceEeCCCcHHHHHHHHHhcCchhhhcCccceeeeccchHH
Q psy5979 256 HPDPNLTYAADLVQAMQAGDFDLGAAFDGDGDRNMVLGKKAFFVNPSDSLAVLAAHLDSIPYFKKTGVKGYARSMPTGAA 335 (499)
Q Consensus 256 ~p~P~~~~l~~l~~~v~~~~adlgia~D~DgDRl~vvd~~G~~l~~d~~~~lla~~ll~~~~~~~~~~~~vv~~~~ss~~ 335 (499)
+|+|+++++..+.+.+++.++|+|+++||||||++++|++|+++++|++++|++.++++. .+...||.|++||.+
T Consensus 216 ~~~p~~~~l~~l~~~v~~~~adlgia~DgDaDR~~~vd~~G~~l~gd~i~~lla~~l~~~-----~~~~~vv~tv~ss~~ 290 (455)
T 1wqa_A 216 NPEPNEENLKEFMEIVKALGADFGVAQDGDADRAVFIDENGRFIQGDKTFALVADAVLKE-----KGGGLLVTTVATSNL 290 (455)
T ss_dssp CSCCCTTTTHHHHHHHHHHTCSEEEEECTTSCCEEEEETTSCBCCHHHHHHHHHHHHHHH-----HTSCEEEEETTSCTH
T ss_pred CCCCchhHHHHHHHHHHHcCCCEEEEECCCCCeEEEEeCCCCEEChhHHHHHHHHHHHHh-----CCCCeEEEeecCcHH
Confidence 999999999999999999999999999999999999999999999999999999999752 222469999999999
Q ss_pred HHHHHHHCCCcEEEeecchhHHhhhhhccCceEEEEecCCC-CCCCccCCchHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q psy5979 336 VDRVAKANNKELFEVPTGWKYFGNLMDAGRLSLCGEESFGT-GSDHIREKDGIWAVLAWLSVVEHTGKPVEEILKSHWKQ 414 (499)
Q Consensus 336 l~~ia~~~g~~v~~t~tG~k~i~~~~~~~~~~~g~Eesgg~-~~~~~~~~Dgi~a~l~lle~la~~~~~L~ell~~lp~~ 414 (499)
++++|+++|+++++|+||||||+++|.+.+++||||||||+ ++++.+++|||+++++++|+++.+++||+|+++++|+
T Consensus 291 l~~~a~~~g~~~~~t~tG~k~i~~~m~~~~~~~ggE~sgg~~~~~~~~~~Dgi~a~l~~le~l~~~g~~L~~~~~~l~~- 369 (455)
T 1wqa_A 291 LDDIAKKHGAKVMRTKVGDLIVARALYENNGTIGGEENGGVIFPEHVLGRDGAMTVAKVVEIFAKSGKKFSELIDELPK- 369 (455)
T ss_dssp HHHHHHHTTCEEEEECSSTTHHHHHHHHTTCSEEEETTEEEECTTTCSSCCHHHHHHHHHHHHHHHCSCHHHHHHTSCC-
T ss_pred HHHHHHHCCCEEEEEcCcHHHHHHHHHhCCceEEEcCcCcEEECCcCcCccHHHHHHHHHHHHHhcCCCHHHHHHhccc-
Confidence 99999999999999999999999999999999999999997 7899999999999999999999999999999999764
Q ss_pred hCCceEeeeccccCCchhHHHHHHHHHhhcCCCCcccccccCCCCcceecccCCCeEEEEeeCCeEEEEeecCCcccccc
Q psy5979 415 YGRNYFTRYDYENCSAAPCNQMMDELEKKVSAPEFKGVTLSAEGRSGSWWRQEKQGVRSAISQTGLVHIQIIRNRQFRRH 494 (499)
Q Consensus 415 ~g~~~~~~~~~~~~~~~~k~~vm~~l~~~~~~~~~~g~~~~~~~~~~~~~v~~iDGik~~~~d~~Wvlir~s~~~~~~~~ 494 (499)
+++.+. .+.|+++ +.++|+++++..+.. + ..++.+||+|+.|+| ||++||||++.|-=|.
T Consensus 370 ---~~~~~~-~v~~~~~-~~~~~~~l~~~~~~~---~-----------~~~~~~DGlr~~~~~-gw~lvRpSgTEP~irv 429 (455)
T 1wqa_A 370 ---YYQIKT-KRHVEGD-RHAIVNKVAEMARER---G-----------YTVDTTDGAKIIFED-GWVLVRASGTEPIIRI 429 (455)
T ss_dssp ---CEEEEE-CCBCCSS-HHHHHHHHHHHHHHT---T-----------CEEECTTSEEEECSS-CEEEECCCSSSSBCCE
T ss_pred ---ccEeeE-eeEcCcH-HHHHHHHHHHhhHhh---c-----------cccccCceEEEEecC-cEEEEEeCCCCceEEE
Confidence 344444 4469988 889999998865220 1 257889999999998 5999999999985443
No 4
>1tuo_A Putative phosphomannomutase; thermus thermophilus HB8, biosynthesis of alginate, structural genomics; 1.70A {Thermus thermophilus}
Probab=100.00 E-value=1.6e-81 Score=666.02 Aligned_cols=406 Identities=24% Similarity=0.320 Sum_probs=339.9
Q ss_pred cccccchhhHHHHHhhCCCceEEEeecCCcchHHHHHHHHHHHHHCCCeEEEeCCCcccchhHHHHHHHHcCCccceEEc
Q psy5979 30 GRYFGDVAVDKIIKISGIRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQVTGGIVLT 109 (499)
Q Consensus 30 ~~~~~~~a~~~~~~~~~~~~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~g~~pTP~~~fav~~~~~~gGI~IT 109 (499)
..+..+.|||+++++++ +++|+||||+|.+|++|++++++||+++|++|+.. .|.+|||+++|++++++|++|||||
T Consensus 31 ~v~~~~~a~~~~l~~~~-~~~VvVG~D~R~ss~~~~~a~a~gl~~~G~~V~~~--~g~~pTP~~~~av~~~~~~~GImIT 107 (464)
T 1tuo_A 31 TLHRLAEAYGRHLLERG-GGLVVVGHDTRFLADAFARALSGHLAGMGLKVVLL--KGPVPTPLLSFAVRHLKAAGGAMLT 107 (464)
T ss_dssp HHHHHHHHHHHHHHHTT-CCEEEEEECSSTTHHHHHHHHHHHHHHHTCEEEEE--SSSCCHHHHHHHHHHTTCSEEEEEC
T ss_pred HHHHHHHHHHHHHHHhC-CCeEEEeeCCCCCHHHHHHHHHHHHHHCCCeEEEc--CCCCCHHHHHHHHHHhCCCceEEEc
Confidence 34445789999998665 67899999999999999999999999999999743 2999999999999999999999999
Q ss_pred CCCCCCCCCCCceeEEEcCCCCCCChhHHHHHHHHHHhhhccCcCCCcccccccccCccccccCCcceEEEeCcHHHHHH
Q psy5979 110 ASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITTQIKTYSIVPDLKVDITSIGSSSYEVDGAQFQVDVIDSVEVYLQ 189 (499)
Q Consensus 110 aSHNP~~~~~~nGiK~~~~~G~~~~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~d~~~~Y~~ 189 (499)
||||| ++||||||++++|.+++++.+++|++.+. + + .+..+|. ++..+..+.|++
T Consensus 108 ASHNP---~~~NGiK~~~~~G~~i~~~~~~~Ie~~~~--~-----~----~~~~~g~-----------~~~~d~~~~Y~~ 162 (464)
T 1tuo_A 108 ASHNP---PQYLGVKFKDATGGPIAQEEAKAIEALVP--E-----E----ARALEGA-----------YETLDLREAYFE 162 (464)
T ss_dssp CTTSC---TTEEEEEEEETTTEECCHHHHHHHHHTCC--S-----C----CCCCCCC-----------CEEECCHHHHHH
T ss_pred CCCCC---chHCCEEEEcCCCCcCChHHHHHHHHHhc--C-----C----ccccCCc-----------eEEcCcHHHHHH
Confidence 99999 89999999999999999999999987542 1 0 1222232 344578999999
Q ss_pred HHHhhcCchhHHhhhcCCCCCCCcEEEEcCCCCCChHHHHHHHHHhcCC--CcceeeecccCCCCCCCCCCCCcccHHHH
Q psy5979 190 LMKEIFDFPKLQSLIKGSSGRPPFKLLINAMHGVTGPYVKKIFLEELGA--QPDNAVNTTPLPDFGGHHPDPNLTYAADL 267 (499)
Q Consensus 190 ~l~~~i~~~~i~~~~~~~~~~~~lkVvvD~~~G~~~~~~~~il~~~lG~--~~~~~v~~~~d~~F~~~~p~P~~~~l~~l 267 (499)
.+++.++.+.++. +++|||+||+||+++.+++++| ++||| +++ .+|++|||+||+++|||+++++.+|
T Consensus 163 ~l~~~~~~~~i~~--------~~lkivvd~~nG~~~~~~~~~l-~~lG~~~~v~-~~~~~pDg~Fp~~~p~p~~~~~~~l 232 (464)
T 1tuo_A 163 ALKAHLDLKALSG--------FSGVLYHDSMGGAGAGFLKGFL-RHVGLEIPVR-PIREEPHPLFHGVNPEPIPKNLGVT 232 (464)
T ss_dssp HHHTTSCHHHHTT--------CCSCEEEECTTSTTTTHHHHHH-HHTTCCCCEE-EESCSCCTTGGGSCSCCSGGGCHHH
T ss_pred HHhhhcChhhccc--------cCCEEEEECCCCcHHHHHHHHH-HHCCCCceEE-EEecccCCCCCCCCcCCCchhHHHH
Confidence 9999988766653 6899999999999999999999 99999 876 6999999999999999999999999
Q ss_pred HHHHH-hCCCcEEEeeCCCCCeeEEEccCceEeCCCcHHHHHHHHHhcCchhhhcCccceeeeccchHHHHHHHHHCCCc
Q psy5979 268 VQAMQ-AGDFDLGAAFDGDGDRNMVLGKKAFFVNPSDSLAVLAAHLDSIPYFKKTGVKGYARSMPTGAAVDRVAKANNKE 346 (499)
Q Consensus 268 ~~~v~-~~~adlgia~D~DgDRl~vvd~~G~~l~~d~~~~lla~~ll~~~~~~~~~~~~vv~~~~ss~~l~~ia~~~g~~ 346 (499)
.+.++ +.++|+|+++||||||++++|++|+++++|++++|++.++++. .....||.|++||.+++++|+++|++
T Consensus 233 ~~~v~~~~~adlgia~DgDaDR~~vvd~~G~~l~gd~i~~Lla~~l~~~-----~~~~~vv~tv~ss~~l~~~a~~~g~~ 307 (464)
T 1tuo_A 233 LAVLGPETPPSFAVATDGDADRVGVVLPGGVFFNPHQVLTTLALYRFRK-----GHRGRAVKNFAVTWLLDRLGERLGFG 307 (464)
T ss_dssp HHHHTTCCTTCEEEEECTTSSBEEEEETTTEEECHHHHHHHHHHHHHHT-----TCCSEEEEETTSCTHHHHHHHHHTCC
T ss_pred HHHHHhccCCCEEEEECCCCCeEEEEeCCCEEECHHHHHHHHHHHHHhh-----CCCCeEEEeecchHHHHHHHHHcCCe
Confidence 99998 8999999999999999999999999999999999999999752 22246999999999999999999999
Q ss_pred EEEeecchhHHhhhhhccCceEEEEecCCC-CCCCccCCchHHHHHHHHHHHHHcCCCHHHHHHHHHHHhC-CceEeeec
Q psy5979 347 LFEVPTGWKYFGNLMDAGRLSLCGEESFGT-GSDHIREKDGIWAVLAWLSVVEHTGKPVEEILKSHWKQYG-RNYFTRYD 424 (499)
Q Consensus 347 v~~t~tG~k~i~~~~~~~~~~~g~Eesgg~-~~~~~~~~Dgi~a~l~lle~la~~~~~L~ell~~lp~~~g-~~~~~~~~ 424 (499)
+++||||||||.++|.+.+++||||||||+ +++|.+++||++++++++|+++++++||+|+++++|++|| ++++.+.+
T Consensus 308 ~~~t~tG~k~i~~~m~~~~~~~ggE~Sgg~~~~~~~~~~Dgi~a~l~~le~~a~~g~~L~ell~~l~~~~~~~~~~~~~~ 387 (464)
T 1tuo_A 308 VTTTPVGFKWIKEEFLKGDCFIGGEESGGVGYPEHLPERDGILTSLLLLESVAATGKDLAEQFKEVEALTGLTHAYDRLD 387 (464)
T ss_dssp EEEECSSHHHHHHHHTTTCEEEEECTTSBEEETTTEEEECHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHTCCCEEEEEC
T ss_pred EEEecCcHHHHHHHHHhcCcEEEEccceeEEECCcCcCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHcCccccceEEe
Confidence 999999999999999999999999999998 6889999999999999999999999999999999999999 87766666
Q ss_pred cccCCchhHHHHHHHHHhhcCCCCcccccccCCCCcceecccCCCeEEEEeeCCeEEEEeecCCcccccc
Q psy5979 425 YENCSAAPCNQMMDELEKKVSAPEFKGVTLSAEGRSGSWWRQEKQGVRSAISQTGLVHIQIIRNRQFRRH 494 (499)
Q Consensus 425 ~~~~~~~~k~~vm~~l~~~~~~~~~~g~~~~~~~~~~~~~v~~iDGik~~~~d~~Wvlir~s~~~~~~~~ 494 (499)
+ .|+++. +|+++++. ..+.|.+ ...++.+||+|+.|+| ||++||||++.|-=|.
T Consensus 388 v-~~~~~~---~~~~l~~~---~~~~~~~--------~~~v~~~DGl~~~~~~-~w~lvRpSgTEP~lrv 441 (464)
T 1tuo_A 388 L-PLKAPL---DLTPFREP---RPLAGLT--------PKGVDTLDGVKWLYEE-AWVLFRASGTEPVVRI 441 (464)
T ss_dssp ----------------------CCCTTCC--------EEEEECSSSEEEEETT-EEEEEECC-----CEE
T ss_pred E-EeCCHH---HHHhhhhh---HhhCCCc--------eeEEEcCCeEEEEECC-EEEEEEcCCCccEEEE
Confidence 5 587764 88888663 2222211 1357899999999998 9999999999985443
No 5
>3uw2_A Phosphoglucomutase/phosphomannomutase family PROT; structural genomics, seattle structural genomics center for infectious disease; 1.95A {Burkholderia thailandensis}
Probab=100.00 E-value=2.7e-80 Score=657.29 Aligned_cols=417 Identities=22% Similarity=0.273 Sum_probs=349.3
Q ss_pred HHHhhc-CCCCCCeEEEeCCcccccchhhHHHHHhhCCCceEEEeecCCcchHHHHHHHHHHHHHCCCeEEEeCCCcccc
Q psy5979 11 ILTALG-DKLKGSVLVVGGDGRYFGDVAVDKIIKISGIRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILS 89 (499)
Q Consensus 11 ~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~g~~p 89 (499)
||...| ||+-|..++- +..+-.+.|||+++++++ +++|+||||+|.+|++|++++++||+++|++|+++ |.+|
T Consensus 27 ~Fgt~GiRG~~~~~lt~--~~~~~ig~A~~~~l~~~~-~~~VvVG~D~R~ss~~~~~a~a~gl~a~Gi~V~~~---g~~p 100 (485)
T 3uw2_A 27 IFKAYDIRGVIGKTLDA--DVARSIGRAFGSEVRAQG-GDAVVVARDGRLSGPELVGALADGLRAAGVDVVDV---GMVP 100 (485)
T ss_dssp GBCSSSEEEEBTTTBCH--HHHHHHHHHHHHHHHHTT-CCEEEEEECSCTTHHHHHHHHHHHHHHTTCEEEEE---EECC
T ss_pred ccccCCEEEEeCCCCCH--HHHHHHHHHHHHHHHHcC-CCEEEEEECCCcCHHHHHHHHHHHHHHCCCEEEEe---CCCC
Confidence 333444 5555544332 455556789999997553 57899999999999999999999999999999998 9999
Q ss_pred hhHHHHHHH--------HcCCccceEEcCCCCCCCCCCCceeEEEcCCCCCCChhHHHHHHHHHHhhhccCcCCCccccc
Q psy5979 90 TPAVSALIR--------KHQVTGGIVLTASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITTQIKTYSIVPDLKVDI 161 (499)
Q Consensus 90 TP~~~fav~--------~~~~~gGI~ITaSHNP~~~~~~nGiK~~~~~G~~~~~~~~~~Ie~~~~~~~~~~~~~~~~~~~ 161 (499)
||+++|+++ +++|++|||||||||| ++||||||++ +|.+++++.+++|++.+.. +++.+
T Consensus 101 TP~l~~av~~~~~~~~~~~~~~~GImITASHNP---~~~NGiK~~~-~G~~i~~~~~~~I~~~~~~-~~~~~-------- 167 (485)
T 3uw2_A 101 TPVGYFAASVPLALSGGERRVDSCIVVTGSHNP---PDYNGFKMVL-RGAAIYGDQIQGLYKRIVD-ARFET-------- 167 (485)
T ss_dssp HHHHHHHTTSCEEETTEEECCCCEEEECCTTSC---TTEEEEEEEE-TTEECCTHHHHHHHHHHHT-TCCCC--------
T ss_pred hHHHHHHHhccccccccccCCCeEEEEEeCCCC---cccceEEEec-CCCCCCHHHHHHHHHHHhc-CCccc--------
Confidence 999999999 8999999999999999 8999999998 6999999999999988754 33320
Q ss_pred ccccCccccccCCcceEEEeCcHHHHHHHHHhhcCchhHHhhhcCCCCCCCcEEEEcCCCCCChHHHHHHHHHhcCCCcc
Q psy5979 162 TSIGSSSYEVDGAQFQVDVIDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINAMHGVTGPYVKKIFLEELGAQPD 241 (499)
Q Consensus 162 ~~ig~~~~~~~~~~~~~~~~d~~~~Y~~~l~~~i~~~~i~~~~~~~~~~~~lkVvvD~~~G~~~~~~~~il~~~lG~~~~ 241 (499)
.. +.+...+..+.|++.+++.++.+ +++|||+||+||+++.+++++| ++|||+++
T Consensus 168 -~~-----------g~~~~~d~~~~Yi~~l~~~i~~~------------~~lkIvvD~~~Ga~~~~~~~il-~~lG~~v~ 222 (485)
T 3uw2_A 168 -GS-----------GSYEQYDVADQYVERIVGDIKLT------------RPLKLVVDAGNGVAGPLATRLF-KALGCELV 222 (485)
T ss_dssp -CC-----------CCEEECCCHHHHHHHHHTTCCCS------------SCCCEEEECTTSTHHHHHHHHH-HHTTCCEE
T ss_pred -CC-----------ceEEecchHHHHHHHHHHhcCcc------------cCCEEEEEcCCCcHHHHHHHHH-HHcCCeEE
Confidence 01 22455678999999999988641 4799999999999999999999 99999987
Q ss_pred eeeecccCCCCCCCCCCCC-cccHHHHHHHHHhCCCcEEEeeCCCCCeeEEEccCceEeCCCcHHHHHHHHHhcCchhhh
Q psy5979 242 NAVNTTPLPDFGGHHPDPN-LTYAADLVQAMQAGDFDLGAAFDGDGDRNMVLGKKAFFVNPSDSLAVLAAHLDSIPYFKK 320 (499)
Q Consensus 242 ~~v~~~~d~~F~~~~p~P~-~~~l~~l~~~v~~~~adlgia~D~DgDRl~vvd~~G~~l~~d~~~~lla~~ll~~~~~~~ 320 (499)
.+++.|||+||++.|+|+ ++++..+.+.|++.+||+||++||||||++++|++|+++++|++++|++.++++ +
T Consensus 223 -~~~~~pDg~Fp~~~p~P~~~~~l~~l~~~v~~~~aDlgia~DgDaDR~~vvd~~G~~i~gd~~~alla~~ll~-----~ 296 (485)
T 3uw2_A 223 -ELFTDIDGNFPNHHPDPAHPENLQDVIAKLKATDAEIGFAFDGDGDRLGVVTKDGQIIYPDRQLMLFAEEVLS-----R 296 (485)
T ss_dssp -EESCSCCTTCCSSCSCTTSGGGGHHHHHHHHHSSCCEEEEECTTSSCEEEECTTSCBCCHHHHHHHHHHHHHH-----H
T ss_pred -EecCccCCCCCCCCcCCCCHHHHHHHHHHHHhhCCCEEEEECCCCCeEEEEeCCCceECHHHHHHHHHHHHHH-----h
Confidence 699999999999999997 578999999999999999999999999999999999999999999999999975 2
Q ss_pred cCccceeeeccchHHHHHHHHHCCCcEEEeecchhHHhhhhhccCceEEEEecCCC-CCCC-ccCCchHHHHHHHHHHHH
Q psy5979 321 TGVKGYARSMPTGAAVDRVAKANNKELFEVPTGWKYFGNLMDAGRLSLCGEESFGT-GSDH-IREKDGIWAVLAWLSVVE 398 (499)
Q Consensus 321 ~~~~~vv~~~~ss~~l~~ia~~~g~~v~~t~tG~k~i~~~~~~~~~~~g~Eesgg~-~~~~-~~~~Dgi~a~l~lle~la 398 (499)
.+...||.|+.||..++++++++|+++++||||||||+++|.+.+++||||+|||+ ++++ ..++||++++++++|+|+
T Consensus 297 ~~~~~vv~~v~ss~~l~~~~~~~g~~~~~t~vG~k~i~~~m~~~~~~~ggE~SG~~~f~~~~~~~~Dgi~aal~lle~la 376 (485)
T 3uw2_A 297 NPGAQIIYDVKCTRNLARWVREKGGEPLMWKTGHSLVKAKLRETGAPLAGEMSGHVFFKDRWYGFDDGLYTGARLLEILA 376 (485)
T ss_dssp STTCEEEEETTSCTHHHHHHHHTTCEEEEECSSHHHHHHHHHHHCCSEEECTTSCEEETTTTCSSBCHHHHHHHHHHHHT
T ss_pred CCCCeEEEEeCCcHHHHHHHHHcCCEEEEEcCChHHHHHHHHhhcccceecccCcEeeccccCCCCcHHHHHHHHHHHHH
Confidence 33346999999999999999999999999999999999999999999999999997 5654 457999999999999999
Q ss_pred HcCCCHHHHHHHHHHHhCCceEeeeccccCCchhHHHHHHHHHhhcCCCCcccccccCCCCcceecccCCCeEEEEeeCC
Q psy5979 399 HTGKPVEEILKSHWKQYGRNYFTRYDYENCSAAPCNQMMDELEKKVSAPEFKGVTLSAEGRSGSWWRQEKQGVRSAISQT 478 (499)
Q Consensus 399 ~~~~~L~ell~~lp~~~g~~~~~~~~~~~~~~~~k~~vm~~l~~~~~~~~~~g~~~~~~~~~~~~~v~~iDGik~~~~d~ 478 (499)
+++ +|+++++++|+. +......+.|+|+.+.++|++|.+.... .+ ..+++.+||+|+.|+|
T Consensus 377 ~~~-~lsel~~~lp~~----~~~~~~~v~~~~~~~~~~~~~l~~~~~~---~~----------~~~~~~~DGvrv~~~~- 437 (485)
T 3uw2_A 377 RVA-DPSALLNGLPNA----VSTPELQLKLEEGENVKLIDKLRADAKF---DG----------ADEVVTIDGLRVEYPD- 437 (485)
T ss_dssp TSS-CHHHHHHTSCCC----EECCCEEC------CTHHHHHHHHSCCC---TT----------CSEEECSSSEEEEETT-
T ss_pred hcC-CHHHHHHHhhHh----hCCceEEEeCCchhHHHHHHHHHhhhcc---cc----------cccccccceEEEEeCC-
Confidence 989 999999988863 3332223468888889999999886421 11 1368999999999977
Q ss_pred eEEEEeecCCccccccee
Q psy5979 479 GLVHIQIIRNRQFRRHVV 496 (499)
Q Consensus 479 ~Wvlir~s~~~~~~~~~~ 496 (499)
||+|||||++.|.=|.++
T Consensus 438 gwvlvRpSgTEP~lrv~~ 455 (485)
T 3uw2_A 438 GFGLARSSNTTPVVVLRF 455 (485)
T ss_dssp EEEEEEECSSSSSEEEEE
T ss_pred cEEEEEecCCCCeEEEEE
Confidence 899999999999755543
No 6
>1kfi_A Phosphoglucomutase 1; parafusin, phosphoprotein PP63, exocytosis, isomerase; 2.40A {Paramecium tetraurelia} SCOP: c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1 PDB: 1kfq_A
Probab=100.00 E-value=1.5e-79 Score=666.10 Aligned_cols=443 Identities=49% Similarity=0.832 Sum_probs=360.2
Q ss_pred chhhHHHHHhhC-CCc-eEEEeecCCcchHHHHHHHHHHHHHCCCeEEEeCCCcccchhHHHHHHHHc-----CCccceE
Q psy5979 35 DVAVDKIIKISG-IRS-VLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKH-----QVTGGIV 107 (499)
Q Consensus 35 ~~a~~~~~~~~~-~~~-~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~g~~pTP~~~fav~~~-----~~~gGI~ 107 (499)
+.|+|+.+.+.+ .++ +|+||||+|.+|++|+++++++|+++|++|+++.+.|++|||+++|+++++ +|++|||
T Consensus 43 ~~a~~~~l~~~~~~~~~~VvIG~D~R~sS~~~a~~~a~~l~a~Gi~V~~~~~~G~~pTP~l~fav~~~n~~~~~a~~GIm 122 (572)
T 1kfi_A 43 VQSIFNTLRKDELKPKNVLFVGGDGRYFNRQAIFSIIRLAYANDISEVHVGQAGLMSTPASSHYIRKVNEEVGNCIGGII 122 (572)
T ss_dssp HHHHHHHSCGGGSSSSCEEEEEECCCTTHHHHHHHHHHHHHHTTCSEEEEEGGGCBCHHHHHHHHHHHHHHSCCEEEEEE
T ss_pred HHHHHHHHhhhccCCCCEEEEEecCCCCHHHHHHHHHHHHHHCCCEEEEecCCCCCChHHHHHHHHHhccccCCcceEEE
Confidence 467777775433 345 899999999999999999999999999999998444899999999999999 9999999
Q ss_pred EcCCCCCCCCC-CCceeEEEcCCCCCCChhHHHHHHHHHHhhhccCcCCCc---ccccccccCcccc---ccCCcceEEE
Q psy5979 108 LTASHNPGGPD-NDFGIKFNTSNGGPAPDAVTENIYKITTQIKTYSIVPDL---KVDITSIGSSSYE---VDGAQFQVDV 180 (499)
Q Consensus 108 ITaSHNP~~~~-~~nGiK~~~~~G~~~~~~~~~~Ie~~~~~~~~~~~~~~~---~~~~~~ig~~~~~---~~~~~~~~~~ 180 (499)
|||||||++|. +|||||||+++|.+++++.+++|++.+.+++++..+... ..+++.++..... .....+.++.
T Consensus 123 ITASHNP~~~~~~~NGiK~~~~~G~~~~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 202 (572)
T 1kfi_A 123 LTASHNPGGKEHGDFGIKFNVRTGAPAPEDFTDQIYTHTTKIKEYLTVDYEFEKHINLDQIGVYKFEGTRLEKSHFEVKV 202 (572)
T ss_dssp ECCTTSCCSTTTCEEEEEEECTTSSBCCHHHHHHHHHHHTTCCEEEECCCCGGGTCCTTSCEEEEEEBCCTTCCEEEEEE
T ss_pred EeCCCCCCCcCcccCcEEEecCCCCcCCHHHHHHHHHHHHhhhcccccccccccccChhhccccccccccccccccceee
Confidence 99999993211 499999999999999999999999987654444211100 0111112210000 0001123455
Q ss_pred eCcHHHHHHHHHhhcCchhHHhhhcCCCCCCCcEEEEcCCCCCChHHHHHHHHH-hcCCC-cceeeecccCCCCCCCCCC
Q psy5979 181 IDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINAMHGVTGPYVKKIFLE-ELGAQ-PDNAVNTTPLPDFGGHHPD 258 (499)
Q Consensus 181 ~d~~~~Y~~~l~~~i~~~~i~~~~~~~~~~~~lkVvvD~~~G~~~~~~~~il~~-~lG~~-~~~~v~~~~d~~F~~~~p~ 258 (499)
.+..+.|++.+++.++.+.|++.++ .+++|||+||+||+++.+++++| + +|||+ ++ .+|++|||+||+++|+
T Consensus 203 ~d~~~~Yi~~l~~~~~~~~i~~~l~----~~~lkIvvd~~nG~~~~~~~~il-~~~lG~~~v~-~l~~~pD~~Fp~~~p~ 276 (572)
T 1kfi_A 203 VDTVQDYTQLMQKLFDFDLLKGLFS----NKDFSFRFDGMHGVAGPYAKHIF-GTLLGCSKES-LLNCDPSEDFGGGHPD 276 (572)
T ss_dssp ECSSHHHHHHHHHHSCHHHHHHHHT----CTTCCEEEECTTSTHHHHHHHHH-TTTTCCCGGG-EESCSCCTTGGGSCCC
T ss_pred cCcHHHHHHHHHHhcCHHHHhhhcc----cCCCEEEEeCCCcchHHHHHHHH-HHhCCCCeEE-EEecccCCCCCCCCCC
Confidence 5788999999999998776664321 14899999999999999999999 9 99996 76 6899999999999999
Q ss_pred CCcccHHHHHHHH-------HhCCCcEEEeeCCCCCeeEEEccCceEeCCCcHHHHHHHHHhcCchhhhcCccceeeecc
Q psy5979 259 PNLTYAADLVQAM-------QAGDFDLGAAFDGDGDRNMVLGKKAFFVNPSDSLAVLAAHLDSIPYFKKTGVKGYARSMP 331 (499)
Q Consensus 259 P~~~~l~~l~~~v-------~~~~adlgia~D~DgDRl~vvd~~G~~l~~d~~~~lla~~ll~~~~~~~~~~~~vv~~~~ 331 (499)
|+++++.+|.+.| ++.+||+||++||||||++++| +|++++++++++|++.++++. ++ ++...|+.|++
T Consensus 277 P~~~~~~~L~~~v~~~~~~a~~~~aDlgiA~DgDaDR~~vvd-~G~~v~~~~~l~ll~~~~l~~--~~-~g~~~Vv~~~~ 352 (572)
T 1kfi_A 277 PNLTYAHDLVELLDIHKKKDVGTVPQFGAACDGDADRNMILG-RQFFVTPSDSLAVIAANANLI--FK-NGLLGAARSMP 352 (572)
T ss_dssp CSTTTTHHHHHHTTTTCCSCGGGSCSEEEEECTTSCBEEEEE-TTEEECHHHHHHHHHHTHHHH--ST-TCCCCEEEETT
T ss_pred CCchhHHHHHHHHhhhhccccccCCCeEEeeCCCCceeEEee-CCeEecccHhHHHHHHHHHHH--hc-CCCcEEEEEeC
Confidence 9999999999999 8999999999999999999999 899999999999999988642 11 22225899999
Q ss_pred chHHHHHHHHHCCCcEEEeecchhHHhhhhhccCceEEEEecCCCCCCCccCCchHHHHHHHHHHHHHcCC------CHH
Q psy5979 332 TGAAVDRVAKANNKELFEVPTGWKYFGNLMDAGRLSLCGEESFGTGSDHIREKDGIWAVLAWLSVVEHTGK------PVE 405 (499)
Q Consensus 332 ss~~l~~ia~~~g~~v~~t~tG~k~i~~~~~~~~~~~g~Eesgg~~~~~~~~~Dgi~a~l~lle~la~~~~------~L~ 405 (499)
||.+++++|+++|+++++|+||||||.++|++.+++||||||||++++|.+++|||++++++||+++..++ ||+
T Consensus 353 ss~~l~~ia~~~G~~~~~t~tG~k~i~~~m~~~~~~~ggEeSgg~~~~~~~~kDgi~a~l~~le~la~~~~~g~~~~tL~ 432 (572)
T 1kfi_A 353 TSGALDKVAAKNGIKLFETPTGWKFFGNLMDAGLINLCGEESFGTGSNHIREKDGIWAVLAWLTILAHKNKNTDHFVTVE 432 (572)
T ss_dssp SCTHHHHHHHHHTCCEEEECSSTHHHHHHHHTTSCSEEEETTTEEEETTSSSCCHHHHHHHHHHHHHHHTSSCSSCCCHH
T ss_pred chHHHHHHHHHcCCeEEEeCCcHHHHHHHHhcCCcEEEEeccCCccccccCCCccHHHHHHHHHHHHHhccccCCCCCHH
Confidence 99999999999999999999999999999999999999999999878899999999999999999998887 999
Q ss_pred HHHHHHHHHhCCceEeeeccccCCchhHHHHHHHHHhhcCCCCcccc--cccC-CCCcc----eecccCCCeEEEEeeCC
Q psy5979 406 EILKSHWKQYGRNYFTRYDYENCSAAPCNQMMDELEKKVSAPEFKGV--TLSA-EGRSG----SWWRQEKQGVRSAISQT 478 (499)
Q Consensus 406 ell~~lp~~~g~~~~~~~~~~~~~~~~k~~vm~~l~~~~~~~~~~g~--~~~~-~~~~~----~~~v~~iDGik~~~~d~ 478 (499)
|++++++++||++++.+.++..|+++.+.++|++|++... . .|. ++.. .+-.+ ...++.+||+|+.|+||
T Consensus 433 ell~~l~~~yp~~~~~~~~~~~~~~~~~~~im~~l~~~~~--~-~g~~~~v~~~~d~~~~~~~~~~i~~~dglr~~~~dg 509 (572)
T 1kfi_A 433 EIVTQYWQQFGRNYYSRYDYEQVDSAGANKMMEHLKTKFQ--Y-FEQLKQGNKADIYDYVDPVDQSVSKNQGVRFVFGDG 509 (572)
T ss_dssp HHHHHHHHHHCEEEEEEEEEEEECHHHHHHHHHHHHTTHH--H-HHTTSTTCEEEECCEECTTTCCEECCCCEEEECTTS
T ss_pred HHHHHHHHHcCceeEEeeeeecCCHHHHHHHHHHHHhhhh--h-hCCceeEEEeecccccCcccCCCCCCCeEEEEECCC
Confidence 9999999999988877777767899899999999987531 1 110 0100 00000 02578999999999997
Q ss_pred eEEEEeecCCcc
Q psy5979 479 GLVHIQIIRNRQ 490 (499)
Q Consensus 479 ~Wvlir~s~~~~ 490 (499)
+|++||||++.|
T Consensus 510 ~wvlvRpSGTEP 521 (572)
T 1kfi_A 510 SRIIFRLSGTGS 521 (572)
T ss_dssp CEEEEEECSSCS
T ss_pred eEEEEECCCCCC
Confidence 799999999998
No 7
>3na5_A Phosphoglucomutase; isomerase, metal binding; HET: BTB; 1.70A {Salmonella enterica subsp} PDB: 3olp_A 2fuv_A*
Probab=100.00 E-value=1.6e-79 Score=663.07 Aligned_cols=426 Identities=27% Similarity=0.340 Sum_probs=348.2
Q ss_pred chhhHHHHHhhCCCceEEEeecCCcchHHHHHHHHHHHHHCCCeEEEeCCCcccchhHHHHHHHHcC-----CccceEEc
Q psy5979 35 DVAVDKIIKISGIRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQ-----VTGGIVLT 109 (499)
Q Consensus 35 ~~a~~~~~~~~~~~~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~g~~pTP~~~fav~~~~-----~~gGI~IT 109 (499)
+.|||+++++++.+++|+||||+|.+|++++++++++|+++|++|+++.+.|++|||+++|++++++ |++|||||
T Consensus 89 ~~A~a~~l~~~~~~~~VvVG~D~R~~S~~~~~~a~~~L~a~Gi~V~~~~d~g~~PTP~vsfav~~~~~~~~~~~~GImIT 168 (570)
T 3na5_A 89 AQAIAEERAKNGITGPCYVGKDTHALSEPAFISVLEVLAANGVDVIVQENNGFTPTPAVSNAILVHNKKGGPLADGIVIT 168 (570)
T ss_dssp HHHHHHHHHHTTCCSCEEEEECSSTTHHHHHHHHHHHHHHTTCCEEEEGGGCCCCHHHHHHHHHHHHHTCSSCCEEEEEC
T ss_pred HHHHHHHHHHhCCCCeEEEEeCCCcccHHHHHHHHHHHHHCCCEEEEeCCCCccChHHHHHHHHHhCCCccccceEEEEE
Confidence 6789999987776678999999999999999999999999999999763349999999999999998 89999999
Q ss_pred CCCCCCCCCCCceeEEEcCCCCCCChhHHHHHHHHHHhhh--ccCcCCCcccccccccCccccccCCcceEEEeCcHHHH
Q psy5979 110 ASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITTQIK--TYSIVPDLKVDITSIGSSSYEVDGAQFQVDVIDSVEVY 187 (499)
Q Consensus 110 aSHNP~~~~~~nGiK~~~~~G~~~~~~~~~~Ie~~~~~~~--~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~d~~~~Y 187 (499)
||||| ++|||||+++++|.|++++.+++|++.++++. .+..++ +.+++. ....+.++..+..+.|
T Consensus 169 ASHNP---~~~NGiK~~~~~G~~~~~~i~~~Ie~~~~~~~~~~~~~~~--~~~~~~--------~~~~g~i~~~d~~~~Y 235 (570)
T 3na5_A 169 PSHNP---PEDGGIKYNPPNGGPADTNVTKVVEDRANALLAGGLQGVK--RISLDA--------AMASGHVKAVDLVQPF 235 (570)
T ss_dssp CTTCC---TTCEEEEEECTTSSCCCHHHHHHHHHHHHHHHHTTTTTCC--CCCHHH--------HHHTTCEEEECCHHHH
T ss_pred eCCCC---hHHCcEEEecCCCCcCCHHHHHHHHHHHHHhhhccccccc--ccchhh--------hccCCeeeccchHHHH
Confidence 99999 89999999999999999999999998765421 111010 001110 0012235566889999
Q ss_pred HHHHHhhcCchhHHhhhcCCCCCCCcEEEEcCCCCCChHHHHHHHHHhcCCCcceeeecccCCCCCCCCCC--------C
Q psy5979 188 LQLMKEIFDFPKLQSLIKGSSGRPPFKLLINAMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPD--------P 259 (499)
Q Consensus 188 ~~~l~~~i~~~~i~~~~~~~~~~~~lkVvvD~~~G~~~~~~~~il~~~lG~~~~~~v~~~~d~~F~~~~p~--------P 259 (499)
++.+.+.++.+.|+. +++|||+||+||+++.+++++| ++|||+++ .+++++||+||+++|+ |
T Consensus 236 i~~l~~~i~~~~i~~--------~~lkIvvD~~~Gag~~~~~~il-~~lG~~v~-~v~~~~D~~F~~~~p~~~G~i~~~~ 305 (570)
T 3na5_A 236 VEGLADIVDMAAIQK--------AGLTLGVDPLGGSGIEYWKRIA-EHYKLNLT-LVNDQVDQTFRFMHLDKDGAIRMDC 305 (570)
T ss_dssp HHHGGGTSCHHHHHH--------HTCCEEEECTTCTTHHHHHHHH-HHTTCCEE-ESCCCCCTTCTTSBCCTTSSCCCCT
T ss_pred HHHHHhhcChhhhcc--------CCCEEEEECCCCcHHHHHHHHH-HHcCCeEE-EECCEECCCCCCCCCCcccccCCCC
Confidence 999999999877765 5899999999999999999999 99999976 6999999999997764 3
Q ss_pred C-cccHHHHHHHHHhCCCcEEEeeCCCCCeeEEEccCceEeCCCcHHHHHHHHHhcCc-hhhhcCccceeeeccchHHHH
Q psy5979 260 N-LTYAADLVQAMQAGDFDLGAAFDGDGDRNMVLGKKAFFVNPSDSLAVLAAHLDSIP-YFKKTGVKGYARSMPTGAAVD 337 (499)
Q Consensus 260 ~-~~~l~~l~~~v~~~~adlgia~D~DgDRl~vvd~~G~~l~~d~~~~lla~~ll~~~-~~~~~~~~~vv~~~~ss~~l~ 337 (499)
. ++++..+.+. +.+||+||++||||||++++|+ |+++++|++++|++.|+++.. .| ++...|+.|++||.+++
T Consensus 306 ~~~~al~~l~~~--~~~aDlgia~DgDaDR~~ivd~-g~~l~gd~~lal~a~~ll~~~~~~--~~~~~v~~t~vSs~~l~ 380 (570)
T 3na5_A 306 SSECAMAGLLAL--RDKFDLAFANDPDYDRHGIVTP-AGLMNPNHYLAVAINYLFQHRPLW--GKDVAVGKTLVSSAMID 380 (570)
T ss_dssp TCTTTTHHHHTT--GGGCSEEEEECTTSCBEEEEET-TEECCHHHHHHHHHHHHTTSCTTS--CTTCEEEEETTSCTHHH
T ss_pred CChHHHHHHHHh--ccCCCEEEEECCCCCeEEEEEC-CEEECHhHHHHHHHHHHHHhCCCC--CCCceEEEeeCchHHHH
Confidence 3 2345666543 7799999999999999999999 899999999999999998630 00 01235888999999999
Q ss_pred HHHHHCCCcEEEeecchhHHhhhhhccCceEEEEecCCC-CCC-----CccCCchHHHHHHHHHHHHHcCCCHHHHHHHH
Q psy5979 338 RVAKANNKELFEVPTGWKYFGNLMDAGRLSLCGEESFGT-GSD-----HIREKDGIWAVLAWLSVVEHTGKPVEEILKSH 411 (499)
Q Consensus 338 ~ia~~~g~~v~~t~tG~k~i~~~~~~~~~~~g~Eesgg~-~~~-----~~~~~Dgi~a~l~lle~la~~~~~L~ell~~l 411 (499)
++|+++|+++++||||||||+++|.+.+++||||||||+ +.. |.+++|||+++++++|+++.++++|++++++|
T Consensus 381 ~ia~~~G~~~~~t~tG~k~i~~~m~~~~~~~ggEeSgg~~f~~~~g~~~~~dkDGi~aal~~le~~a~~g~~lsell~~l 460 (570)
T 3na5_A 381 RVVNDLGRKLVEVPVGFKWFVDGLFDGSFGFGGEESAGASFLRFDGTPWSTDKDGIIMCLLAAEITAVTGKNPQEHYNEL 460 (570)
T ss_dssp HHHHHHTCCEEEECSSTHHHHHHHHTTSEEEEEETTTEEEECCTTSCCSCSSCCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHCCCceEEecccHHHHHHHHHhcCCeEEEeccCCcccccccccceeecCcHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 999999999999999999999999999999999999996 543 88999999999999999999999999999999
Q ss_pred HHHhCCceEeeeccccCCchhHHHHHHHHHhhc-CCCCcccccccCCCCcceecccCCCeEEEEeeCCeEEEEeecCCcc
Q psy5979 412 WKQYGRNYFTRYDYENCSAAPCNQMMDELEKKV-SAPEFKGVTLSAEGRSGSWWRQEKQGVRSAISQTGLVHIQIIRNRQ 490 (499)
Q Consensus 412 p~~~g~~~~~~~~~~~~~~~~k~~vm~~l~~~~-~~~~~~g~~~~~~~~~~~~~v~~iDGik~~~~d~~Wvlir~s~~~~ 490 (499)
|++||.+++.+.+. .|+++.| ++|++|+++. ....+.|.++.....-....++.+||+|+.|+| ||++||||++.|
T Consensus 461 ~~~yg~~~~~r~~~-~~~~~~k-~~m~~l~~~~~~~~~~~g~~i~~~~~~~~~~~~~iDGlkv~~~d-gW~lvRpSgTEP 537 (570)
T 3na5_A 461 AARFGAPSYNRLQA-SATSAQK-AALSKLSPEMVSASTLAGDPITARLTAAPGNGASIGGLKVMTDN-GWFAARPSGTED 537 (570)
T ss_dssp HHHHCCCEEEEEEE-ECCHHHH-HHHHTCCGGGCCCSEETTEECCEEEEECTTTCCEEEEEEEECSS-EEEEEEECSSSS
T ss_pred HHHhCCceeEEecC-CCCHHHH-HHHHHhhhccCcchhhcCcceEEEeecccCCcCCCCeEEEEecC-cEEEEEECCCCC
Confidence 99999877777765 6888766 7888887542 112344433320000000135779999999987 899999999998
Q ss_pred c
Q psy5979 491 F 491 (499)
Q Consensus 491 ~ 491 (499)
.
T Consensus 538 ~ 538 (570)
T 3na5_A 538 A 538 (570)
T ss_dssp E
T ss_pred e
Confidence 4
No 8
>1p5d_X PMM, phosphomannomutase; alpha/beta protein, phosphohexomutase, phosphoserine, enzyme complex, enzyme-metal complex, isomerase; HET: SEP G1P; 1.60A {Pseudomonas aeruginosa} SCOP: c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1 PDB: 1k35_A* 1p5g_X* 1pcj_X* 1pcm_X* 1k2y_X* 2h5a_X* 2h4l_X* 2fkf_A* 3rsm_A 3bkq_X* 3c04_A* 2fkm_X*
Probab=100.00 E-value=7.9e-79 Score=645.76 Aligned_cols=400 Identities=20% Similarity=0.274 Sum_probs=347.5
Q ss_pred CcccccchhhHHHHHhhCCCceEEEeecCCcchHHHHHHHHHHHHHCCCeEEEeCCCcccchhHHHHHHHHcCCccceEE
Q psy5979 29 DGRYFGDVAVDKIIKISGIRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQVTGGIVL 108 (499)
Q Consensus 29 ~~~~~~~~a~~~~~~~~~~~~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~g~~pTP~~~fav~~~~~~gGI~I 108 (499)
+..+..+.|||+++.+.+ +++|+||||+|.+|++|++++++||+++|++|+++ |.+|||+++|++++++|++||||
T Consensus 30 ~~~~~i~~a~~~~l~~~~-~~~VvVG~D~R~ss~~l~~a~~~gl~a~G~~V~~~---g~~pTP~l~~av~~~~~~~GImI 105 (463)
T 1p5d_X 30 ETAYWIGRAIGSESLARG-EPCVAVGRDGRLSGPELVKQLIQGLVDCGCQVSDV---GMVPTPVLYYAANVLEGKSGVML 105 (463)
T ss_dssp HHHHHHHHHHHHHHHHTT-CCEEEEEECSCTTHHHHHHHHHHHHHTBTCEEEEE---EECCHHHHHHHHHHSSCSEEEEE
T ss_pred HHHHHHHHHHHHHHHHcC-CCeEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEe---CCCChHHHHHHHHhcCCCeEEEE
Confidence 344455788999987554 56899999999999999999999999999999998 99999999999999999999999
Q ss_pred cCCCCCCCCCCCceeEEEcCCCCCCChhHHHHHHHHHHhhhccCcCCCcccccccccCccccccCCcceEEEeCcHHHHH
Q psy5979 109 TASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITTQIKTYSIVPDLKVDITSIGSSSYEVDGAQFQVDVIDSVEVYL 188 (499)
Q Consensus 109 TaSHNP~~~~~~nGiK~~~~~G~~~~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~d~~~~Y~ 188 (499)
|||||| ++||||||++ +|.+++++.+++|++.+.+ +++. ... +.+...+..+.|+
T Consensus 106 TASHNP---~~~NGiK~~~-~G~~i~~~~~~~I~~~~~~-~~~~---------~~~-----------g~~~~~d~~~~Y~ 160 (463)
T 1p5d_X 106 TGSHNP---PDYNGFKIVV-AGETLANEQIQALRERIEK-NDLA---------SGV-----------GSVEQVDILPRYF 160 (463)
T ss_dssp CCTTSC---TTEEEEEEEE-TTEECCTHHHHHHHHHHHH-TCCC---------CBC-----------CEEEECCCHHHHH
T ss_pred ccCCCC---cccceEEEEC-CCccCCHHHHHHHHHHHhc-CCcc---------cCC-----------CceecCChHHHHH
Confidence 999999 8999999999 9999999999999988754 2221 012 2244558899999
Q ss_pred HHHHhhcCchhHHhhhcCCCCCCCcEEEEcCCCCCChHHHHHHHHHhcCCCcceeeecccCCCCCCCCCCCCc-ccHHHH
Q psy5979 189 QLMKEIFDFPKLQSLIKGSSGRPPFKLLINAMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDPNL-TYAADL 267 (499)
Q Consensus 189 ~~l~~~i~~~~i~~~~~~~~~~~~lkVvvD~~~G~~~~~~~~il~~~lG~~~~~~v~~~~d~~F~~~~p~P~~-~~l~~l 267 (499)
+.+++.++.+ +++|||+||+||+++.+++++| ++|||+++ .+|++|||+||++.|+|+. +++..+
T Consensus 161 ~~l~~~~~~~------------~~lkivvD~~nG~~~~~~~~ll-~~lG~~v~-~~~~~pDg~f~~~~p~p~~~~~l~~l 226 (463)
T 1p5d_X 161 KQIRDDIAMA------------KPMKVVVDCGNGVAGVIAPQLI-EALGCSVI-PLYCEVDGNFPNHHPDPGKPENLKDL 226 (463)
T ss_dssp HHHHTTCCCS------------SCEEEEEECTTSGGGGTHHHHH-HHHHEEEE-EESCSCCTTCCSSCSCTTSGGGGHHH
T ss_pred HHHHhhhccc------------CCCEEEEECCCCcHHHHHHHHH-HHcCCeEE-EEeCccCCCCCCCCcCCCCHHHHHHH
Confidence 9999987631 4799999999999999999999 99999986 6999999999999999986 889999
Q ss_pred HHHHHhCCCcEEEeeCCCCCeeEEEccCceEeCCCcHHHHHHHHHhcCchhhhcCccceeeeccchHHHHHHHHHCCCcE
Q psy5979 268 VQAMQAGDFDLGAAFDGDGDRNMVLGKKAFFVNPSDSLAVLAAHLDSIPYFKKTGVKGYARSMPTGAAVDRVAKANNKEL 347 (499)
Q Consensus 268 ~~~v~~~~adlgia~D~DgDRl~vvd~~G~~l~~d~~~~lla~~ll~~~~~~~~~~~~vv~~~~ss~~l~~ia~~~g~~v 347 (499)
.+.+++.++|+|+++||||||++++|++|+++++|++++|++.++++ ..+...||.|+.||.+++++++++|+++
T Consensus 227 ~~~v~~~~adlgia~DgDaDR~~~vd~~G~~l~gd~i~~L~a~~l~~-----~~~~~~vv~~v~ss~~l~~~~~~~g~~~ 301 (463)
T 1p5d_X 227 IAKVKAENADLGLAFDGDGDRVGVVTNTGTIIYPDRLLMLFAKDVVS-----RNPGADIIFDVKCTRRLIALISGYGGRP 301 (463)
T ss_dssp HHHHHHTTCSEEEEECTTSSBEEEEETTCCEECHHHHHHHHHHHHHH-----HSTTCEEEEETTSCTHHHHHHHHTTCEE
T ss_pred HHHHHHhCCCEEEEECCCCCeEEEEeCCCcEeCHHHHHHHHHHHHHH-----hCCCCeEEEEecCcHHHHHHHHHcCCEE
Confidence 99999999999999999999999999999999999999999999975 2233468999999999999999999999
Q ss_pred EEeecchhHHhhhhhccCceEEEEecCCC-CCC-CccCCchHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCceEeeecc
Q psy5979 348 FEVPTGWKYFGNLMDAGRLSLCGEESFGT-GSD-HIREKDGIWAVLAWLSVVEHTGKPVEEILKSHWKQYGRNYFTRYDY 425 (499)
Q Consensus 348 ~~t~tG~k~i~~~~~~~~~~~g~Eesgg~-~~~-~~~~~Dgi~a~l~lle~la~~~~~L~ell~~lp~~~g~~~~~~~~~ 425 (499)
++|+||||||.++|.+.+++||||+|||+ +++ +..++||+++++++||+++.+|++|+|++++||+. +......
T Consensus 302 ~~t~tG~k~i~~~m~~~~~~~ggE~sG~~~~~~~~~~~~Dgi~aal~~le~~a~~g~~Ls~ll~~l~~~----~~~~~~~ 377 (463)
T 1p5d_X 302 VMWKTGHSLIKKKMKETGALLAGEMSGHVFFKERWFGFDDGIYSAARLLEILSQDQRDSEHVFSAFPSD----ISTPEIN 377 (463)
T ss_dssp EEECSSHHHHHHHHHHHCCSEEECTTSBEEETTTTCSSBCHHHHHHHHHHHHHTCSSCHHHHHHTSCCC----EECCCEE
T ss_pred EEeCCcHHHHHHHHHhcCCceeecCCCcEEeccccCCCCcHHHHHHHHHHHHHHhCCCHHHHHHHhhHh----hCceeEE
Confidence 99999999999999999999999999997 666 66679999999999999999999999999999863 3332333
Q ss_pred ccCCchhHHHHHHHHHhhcCCCCcccccccCCCCcceecccCCCeEEEEeeCCeEEEEeecCCcccccce
Q psy5979 426 ENCSAAPCNQMMDELEKKVSAPEFKGVTLSAEGRSGSWWRQEKQGVRSAISQTGLVHIQIIRNRQFRRHV 495 (499)
Q Consensus 426 ~~~~~~~k~~vm~~l~~~~~~~~~~g~~~~~~~~~~~~~v~~iDGik~~~~d~~Wvlir~s~~~~~~~~~ 495 (499)
+.|+++.+.++|++++++. .+++ .+++.+||+|+.++| ||+|||||++.|-=|..
T Consensus 378 v~~~~~~~~~~~~~l~~~~---~~~~-----------~~~~~~DGlr~~~~~-gw~lvRpSgTEP~~rvy 432 (463)
T 1p5d_X 378 ITVTEDSKFAIIEALQRDA---QWGE-----------GNITTLDGVRVDYPK-GWGLVRASNTTPVLVLR 432 (463)
T ss_dssp EECCTTTHHHHHHHHHHHC---CCCS-----------SEEECSSSEEEEETT-EEEEEEECSSSSEEEEE
T ss_pred EEcCchhHHHHHHHHHhcc---ccCC-----------CcccccceEEEEecC-cEEEEEecCCCceEEEE
Confidence 4699888899999995542 0111 367889999999988 89999999999865443
No 9
>2z0f_A Putative phosphoglucomutase; isomerase, magnesium, metal-binding, structural genomics; 2.52A {Thermus thermophilus}
Probab=100.00 E-value=1.2e-76 Score=638.20 Aligned_cols=428 Identities=22% Similarity=0.300 Sum_probs=324.3
Q ss_pred ccccchhhHHHHHhhCCCceEEEeecCCcchHHHHHHHHHHHHHCCCeEEEeCCCcccchhHHHHHHHHcC-----Cccc
Q psy5979 31 RYFGDVAVDKIIKISGIRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQ-----VTGG 105 (499)
Q Consensus 31 ~~~~~~a~~~~~~~~~~~~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~g~~pTP~~~fav~~~~-----~~gG 105 (499)
.+..+.|||+++.+++.+++|+||||+|.+|++|++++++||+++|++|+++.+.|.+|||+++|++++++ |++|
T Consensus 45 v~~i~~a~~~~l~~~~~~~~VvIG~D~R~~S~~~~~~~~~gl~a~Gi~V~~~~~~G~~pTP~l~~av~~~~~~~~~a~~G 124 (524)
T 2z0f_A 45 VLAIAQAIAELRPSFGATGPLFLAKDTHALSEPAWATALSVFAAHGIEVRVEADGDYTPTPLVSLAILEHNAHHEAKADG 124 (524)
T ss_dssp HHHHHHHHHHHTTTTTCCSCEEEEECSCTTHHHHHHHHHHHHHHTTCCEEEESSSSCCCHHHHHHHHHHHHTTCSSCCEE
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEeCCCcchHHHHHHHHHHHHHCCCEEEEeCCCCccCcHHHHHHHHHhCCCccccceE
Confidence 34447889999876665568999999999999999999999999999999975458999999999999999 6999
Q ss_pred eEEcCCCCCCCCCCCceeEEEcCCCCCCChhHHHHHHHHHHhh-----hccCcCCCcccccccccCccccccCCcceEEE
Q psy5979 106 IVLTASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITTQI-----KTYSIVPDLKVDITSIGSSSYEVDGAQFQVDV 180 (499)
Q Consensus 106 I~ITaSHNP~~~~~~nGiK~~~~~G~~~~~~~~~~Ie~~~~~~-----~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~ 180 (499)
||||||||| ++||||||++++|.+++++.+++|++....+ +++.+. ++...+ +.+..
T Consensus 125 ImITASHNP---~~~NGiK~~~~~G~~~~~~~~~~Ie~~~~~~~~~~~~~~~~~-----~~~~~~----------~~~~~ 186 (524)
T 2z0f_A 125 VLLTPSHNP---PEDGGFKYNPPTGGPANARITRAIEERANALLQEGLKGVKRL-----PLREAL----------ARAKP 186 (524)
T ss_dssp EEECC--CC---TTCEEEEEECTTSSCCCHHHHHHHHHHHHHHHHTTTTTCCCC-----CHHHHH----------HHCEE
T ss_pred EEEcCCCCC---chhCCEEEECCCCCcCCHHHHHHHHHHHHhhccccccccccc-----Chhhhc----------ccccc
Confidence 999999999 8999999999999999999999999875421 111111 111110 11234
Q ss_pred eCcHHHHHHHHHhhcCchhHHhhhcCCCCCCCcEEEEcCCCCCChHHHHHHHHHhcCCCcceeeecccCCCCCCCCCC--
Q psy5979 181 IDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINAMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPD-- 258 (499)
Q Consensus 181 ~d~~~~Y~~~l~~~i~~~~i~~~~~~~~~~~~lkVvvD~~~G~~~~~~~~il~~~lG~~~~~~v~~~~d~~F~~~~p~-- 258 (499)
.+..+.|++.+++.++.+.++. +++|||+||+||+++.+++++| ++|||+++ .+++++||+||.++|+
T Consensus 187 ~d~~~~Y~~~l~~~~~~~~i~~--------~~lkivvd~~nG~~~~~~~~ll-~~lG~~v~-~v~~~~d~~f~~~~~~~~ 256 (524)
T 2z0f_A 187 FDYAGLYVEKVAEAVDLEAIRA--------SGLRIGVDPLGGASLRVWERLA-ESHGLPLE-VVNPTLDPTFRFMPKDHD 256 (524)
T ss_dssp ECHHHHHHHHGGGTSCHHHHHH--------SCCCEEEECTTSTTHHHHHHHH-HHHTCCEE-EC----------------
T ss_pred cchHHHHHHHHHHhcChhhhcc--------CCCeEEEeCCCCchHHHHHHHH-HHcCCcEE-EEcCccCCCCCCCCCCCc
Confidence 4778999999999988776654 5899999999999999999999 99999976 6999999999975432
Q ss_pred ----CCcccHHHHHHHH-HhCCCcEEEeeCCCCCeeEEEccCceEeCCCcHHHHHHHHHhcCchhhhcCccceeeeccch
Q psy5979 259 ----PNLTYAADLVQAM-QAGDFDLGAAFDGDGDRNMVLGKKAFFVNPSDSLAVLAAHLDSIPYFKKTGVKGYARSMPTG 333 (499)
Q Consensus 259 ----P~~~~l~~l~~~v-~~~~adlgia~D~DgDRl~vvd~~G~~l~~d~~~~lla~~ll~~~~~~~~~~~~vv~~~~ss 333 (499)
|+++....+...+ ++.+||+||++||||||++++|++ +++++|++++|++.++++.. ..+...|+.+++||
T Consensus 257 g~~~p~p~~~~~l~~~~~~~~~aDlgia~DgDaDR~~vvd~~-~~l~gd~i~alla~~l~~~~---~~~~~~vv~t~vss 332 (524)
T 2z0f_A 257 GKIRMDCSSPYAMAGLLALKDRFDLAIGNDPDADRHGIVTPR-GLMNPNHYLAAALHHLYTTR---SWPGAKVGKTAVTS 332 (524)
T ss_dssp ---------------CCCCCCCSSEEEEECTTSCSEEEEETT-EECCHHHHHHHHHHHHHTTC---CCTTCEEEEETTSC
T ss_pred cccCCCCCChhHHHHHHHhhcCCCEEEEeCCccccceEEecC-ceechhHHHHHHHHHHHHhc---CCCCCeEEEecccH
Confidence 2222223344344 478999999999999999999999 79999999999999997531 00223588999999
Q ss_pred HHHHHHHHHCCCcEEEeecchhHHhhhhhccCceEEEEecCCC-CCCC-----ccCCchHHHHHHHHHHHHHcCCCHHHH
Q psy5979 334 AAVDRVAKANNKELFEVPTGWKYFGNLMDAGRLSLCGEESFGT-GSDH-----IREKDGIWAVLAWLSVVEHTGKPVEEI 407 (499)
Q Consensus 334 ~~l~~ia~~~g~~v~~t~tG~k~i~~~~~~~~~~~g~Eesgg~-~~~~-----~~~~Dgi~a~l~lle~la~~~~~L~el 407 (499)
.+++++|+++|+++++|+||||||.++|.+.+++||||||||+ ++++ .+++|||+++++++|+|+.+|+||+|+
T Consensus 333 ~~l~~ia~~~G~~~~~t~tG~k~i~~~m~~~~~~~ggEeSgg~~~~~~~~~~~~~~~Dgi~aal~~le~~a~~g~~L~el 412 (524)
T 2z0f_A 333 ALLDRVAQALGREVYETPVGFKHFVAGLLEGWLGFAGEESAGASFLRFDGRPFSTDKDGILMGLLAAELMAKRGQAPDAL 412 (524)
T ss_dssp THHHHHHHHTTCCEEEECSSTHHHHHHHHHSSEEEEEETTTEEEECCTTSCCSCSSCCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHHHHhCceEEEcCCcHHHHHHHHhhCCcEEEEEccCcEEECCCCcccccccchHHHHHHHHHHHHHHhCCCHHHH
Confidence 9999999999999999999999999999999999999999997 6665 899999999999999999999999999
Q ss_pred HHHHHHHhCCceEeeeccccCCchhHHHHHHHHHhhc-CCCCcccccccCCCCcceecccCCCeEEEEeeCCeEEEEeec
Q psy5979 408 LKSHWKQYGRNYFTRYDYENCSAAPCNQMMDELEKKV-SAPEFKGVTLSAEGRSGSWWRQEKQGVRSAISQTGLVHIQII 486 (499)
Q Consensus 408 l~~lp~~~g~~~~~~~~~~~~~~~~k~~vm~~l~~~~-~~~~~~g~~~~~~~~~~~~~v~~iDGik~~~~d~~Wvlir~s 486 (499)
++++|++||++++.+.+. .|+++.+ .+|+++++.. ....+.|..+...........+.+||+|+.|+| ||++||||
T Consensus 413 l~~l~~~~g~~~~~~~~~-~~~~~~k-~~~~~l~~~~~~~~~~~~~~i~~~~~~~~g~~~~~dGlr~~~~~-gwvlvRpS 489 (524)
T 2z0f_A 413 YEALAEKLGRPYYARKDL-PVSPEAK-ARLARLSAKEVHPSTLAGEPVLQVLDRATGNGEPLGGIKVVAAN-AWFAVRPS 489 (524)
T ss_dssp HHHHHHHHCCCEEEEEEE-ECCHHHH-HHHTTCCTTTSCCSEETTEECCEEEEECTTTCCEEEEEEEECSS-EEEEEEEC
T ss_pred HHHHHHHhCcceeeeecc-cchHHHH-HHHHHHhhcCCChHHhCCceeEEEEeccCCCCCCCCeEEEEECC-eEEEEEcC
Confidence 999999999877666654 5877665 5777775531 111222221110000000012448999999988 79999999
Q ss_pred CCccccc
Q psy5979 487 RNRQFRR 493 (499)
Q Consensus 487 ~~~~~~~ 493 (499)
++.|-=|
T Consensus 490 gTEP~ir 496 (524)
T 2z0f_A 490 GTEDVAK 496 (524)
T ss_dssp SSSSEEE
T ss_pred CCCCEEE
Confidence 9998543
No 10
>3pdk_A Phosphoglucosamine mutase; 4-domain architecture, mixed A/B fold, phosphohexomutase; 2.70A {Bacillus anthracis}
Probab=100.00 E-value=2.6e-77 Score=632.86 Aligned_cols=407 Identities=20% Similarity=0.266 Sum_probs=336.0
Q ss_pred CCCCCCeEEEeCCcccccchhhHHHHHhhCCCceEEEeecCCcchHHHHHHHHHHHHHCCCeEEEeCCCcccchhHHHHH
Q psy5979 17 DKLKGSVLVVGGDGRYFGDVAVDKIIKISGIRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSAL 96 (499)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~g~~pTP~~~fa 96 (499)
||.-|..++ .+..+..+.|||+++.+.+.+++|+||||+|.+|++|++++++||+++|++|+++ |.+|||+++|+
T Consensus 32 RG~~~~~lt--~~~v~~~g~a~~~~l~~~~~~~~VvIG~D~R~ss~~~~~a~a~gl~s~Gi~V~~~---g~~pTP~l~fa 106 (469)
T 3pdk_A 32 RGVANKELT--PELAFKIGRFGGYVLTKDTDRPKVIIGRDTRISGHMLEGALVAGLLSTGAEVMRL---GVISTPGVAYL 106 (469)
T ss_dssp EEEBTTTBC--HHHHHHHHHHHHHHHHTTCSSCEEEEEECSCTTHHHHHHHHHHHHHTTTCEEEEE---EECCHHHHHHH
T ss_pred eeecCCCCC--HHHHHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHHHHCCCEEEEe---CCCChHHHHHH
Confidence 455454433 3555566899999998655578999999999999999999999999999999999 99999999999
Q ss_pred HHHcCCccceEEcCCCCCCCCCCCceeEEEcCCCCCCChhHHHHHHHHHHhh-hccCcCCCcccccccccCccccccCCc
Q psy5979 97 IRKHQVTGGIVLTASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITTQI-KTYSIVPDLKVDITSIGSSSYEVDGAQ 175 (499)
Q Consensus 97 v~~~~~~gGI~ITaSHNP~~~~~~nGiK~~~~~G~~~~~~~~~~Ie~~~~~~-~~~~~~~~~~~~~~~ig~~~~~~~~~~ 175 (499)
+++++|++|||||||||| ++||||||++++|.+++++.+++|++++.+. +++.+ +.+..+|.
T Consensus 107 v~~~~a~~GImITASHNP---~~~NGiK~~~~~G~~i~~~~~~~Ie~~~~~~~~~~~~-----~~~~~~g~--------- 169 (469)
T 3pdk_A 107 TKALDAQAGVMISASHNP---VQDNGIKFFGSDGFKLTDEQEAEIEALLDKEVDELPR-----PTGTNLGQ--------- 169 (469)
T ss_dssp HHHHTCSEEEEECCTTSC---TTEEEEEEEETTSSBCCHHHHHHHHHHHHSSSCCSCC-----CCGGGSCC---------
T ss_pred HHhcCCCeEEEEEeCCCc---chhCcEEEecCCCcCCCHHHHHHHHHHHhccccccCc-----cccccCcc---------
Confidence 999999999999999999 8999999999999999999999999987641 12221 12233343
Q ss_pred ceEEE-eCcHHHHHHHHHhhcCchhHHhhhcCCCCCCCcEEEEcCCCCCChHHHHHHHHHhcCCCcceeeecccCCCCCC
Q psy5979 176 FQVDV-IDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINAMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGG 254 (499)
Q Consensus 176 ~~~~~-~d~~~~Y~~~l~~~i~~~~i~~~~~~~~~~~~lkVvvD~~~G~~~~~~~~il~~~lG~~~~~~v~~~~d~~F~~ 254 (499)
+.. .+..+.|++.+++.++. + .+++|||+||+||+++.+++++| ++|||+++ .++++|||.||+
T Consensus 170 --~~~~~d~~~~Y~~~l~~~~~~---~--------~~~lkivvD~~nG~~~~~~~~ll-~~lG~~v~-~l~~~pDg~f~n 234 (469)
T 3pdk_A 170 --VSDYFEGGQKYLQYIKQTVEE---D--------FSGLHIALDCAHGATSSLAPYLF-ADLEADIS-TMGTSPNGMNIN 234 (469)
T ss_dssp --EEECTHHHHHHHHHHHTTCSS---C--------CTTCEEEEECTTSTTTTHHHHHH-HHTTCEEE-EESCCCCSSCTT
T ss_pred --EEEcccHHHHHHHHHHHhcCc---c--------cCCCEEEEECCCchHHHHHHHHH-HHcCCEEE-EECCCcCCCCCC
Confidence 332 36789999999998863 1 25899999999999999999999 99999987 699999999986
Q ss_pred CCCCCCcccHHHHHHHHHhCCCcEEEeeCCCCCeeEEEccCceEeCCCcHHHHHHHHHhcCchhhhcCccceeeeccchH
Q psy5979 255 HHPDPNLTYAADLVQAMQAGDFDLGAAFDGDGDRNMVLGKKAFFVNPSDSLAVLAAHLDSIPYFKKTGVKGYARSMPTGA 334 (499)
Q Consensus 255 ~~p~P~~~~l~~l~~~v~~~~adlgia~D~DgDRl~vvd~~G~~l~~d~~~~lla~~ll~~~~~~~~~~~~vv~~~~ss~ 334 (499)
+ +|.+++++.+.+.+++.+||+||++||||||++++|++|+++++|++++|++.++++.. ..+...||.|++||.
T Consensus 235 ~--~~~~~~~~~l~~~v~~~~adlgia~DgDaDR~~~vd~~G~~l~gd~i~~Lla~~l~~~~---~l~~~~vv~tv~ss~ 309 (469)
T 3pdk_A 235 D--GVGSTHPEVLAELVKEKGADIGLAFDGDGDRLIAVDEKGNIVDGDQIMFICAKYMKETG---QLKHNTVVSTVMSNL 309 (469)
T ss_dssp S--SCSTTSTHHHHHHHHHHTCSEEEEECTTSSBEEEEETTSCEECHHHHHHHHHHHHHHTT---CSGGGEEEEETTSCH
T ss_pred C--CCCCCCHHHHHHHHHhcCCcEEEEECCCCCeEEEECCCCcEEChhHHHHHHHHHHHHhC---CCCCCeEEEeecCcH
Confidence 4 45556677888999999999999999999999999999999999999999999997531 101235899999999
Q ss_pred HHHHHHHHCCCcEEEeecchhHHhhhhhccCceEEEEecCCC-CCCCccCCchHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q psy5979 335 AVDRVAKANNKELFEVPTGWKYFGNLMDAGRLSLCGEESFGT-GSDHIREKDGIWAVLAWLSVVEHTGKPVEEILKSHWK 413 (499)
Q Consensus 335 ~l~~ia~~~g~~v~~t~tG~k~i~~~~~~~~~~~g~Eesgg~-~~~~~~~~Dgi~a~l~lle~la~~~~~L~ell~~lp~ 413 (499)
+++++++++|+++++||||||||+++|.+.+++||||+|||+ ++++.+++|||+++++++|+|+.++++|+|+++++|+
T Consensus 310 ~l~~~~~~~G~~~~~t~tG~k~i~~~m~~~~~~~ggE~SG~~~~~~~~~~~Dgi~aal~~le~l~~~g~~Lsel~~~l~~ 389 (469)
T 3pdk_A 310 GFYKALEANGITSDKTAVGDRYVMEEMKRGGYNLGGEQSGHIILLDYITTGDGMLSALQLVNIMKMTKKPLSELAGEMTK 389 (469)
T ss_dssp HHHHHHHHTTCEEEEECSSHHHHHHHHHHHTCCEEECTTSBEEETTTCSSCCHHHHHHHHHHHHHHHTCCHHHHHTTSCC
T ss_pred HHHHHHHHcCCEEEEEcCchHHHHHHHhhcCCeEEEcccCCEecCCCCCCCCHHHHHHHHHHHHHHcCCCHHHHHHHHhh
Confidence 999999999999999999999999999999999999999997 7899999999999999999999999999999998874
Q ss_pred HhCCceEeeeccccCCchhHHHHHHH--HHhhcCCCCcccccccCCCCcceecccCCCeEEEEeeCCeEEEEeecCCccc
Q psy5979 414 QYGRNYFTRYDYENCSAAPCNQMMDE--LEKKVSAPEFKGVTLSAEGRSGSWWRQEKQGVRSAISQTGLVHIQIIRNRQF 491 (499)
Q Consensus 414 ~~g~~~~~~~~~~~~~~~~k~~vm~~--l~~~~~~~~~~g~~~~~~~~~~~~~v~~iDGik~~~~d~~Wvlir~s~~~~~ 491 (499)
|+ .... .|+++.|.++|+. +.+. +++++..+.++||+|||||++.|.
T Consensus 390 -~~---~~~~---~v~~~~k~~~~~~~~~~~~------------------------i~~~~~~~~~~gw~lvRpSgTEP~ 438 (469)
T 3pdk_A 390 -FP---QLLV---NVRVTDKKLALENEKIKEI------------------------IRVVEEEMNGDGRILVRPSGTEPL 438 (469)
T ss_dssp -CC---EEEE---EECCSCHHHHTTCHHHHHH------------------------HHHHHHHCCSSCEEEEECCSSSCC
T ss_pred -cC---ceEE---EEecCchhhhhccHHHHHH------------------------HHHHheEeCCCcEEEEEeCCCCCE
Confidence 32 2222 3444566666532 1111 223333344559999999999997
Q ss_pred cccee
Q psy5979 492 RRHVV 496 (499)
Q Consensus 492 ~~~~~ 496 (499)
=|.++
T Consensus 439 lRv~~ 443 (469)
T 3pdk_A 439 IRVMA 443 (469)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 66554
No 11
>3i3w_A Phosphoglucosamine mutase; csgid, IDP02164, isomerase, magne metal-binding, phosphoprotein, structural genomics; HET: SEP; 2.30A {Francisella tularensis subsp}
Probab=100.00 E-value=3.6e-75 Score=613.18 Aligned_cols=391 Identities=20% Similarity=0.260 Sum_probs=326.1
Q ss_pred CcccccchhhHHHHHhhCCCc-eEEEeecCCcchHHHHHHHHHHHHHCCCeEEEeCCCcccchhHHHHHHHHcCCccceE
Q psy5979 29 DGRYFGDVAVDKIIKISGIRS-VLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQVTGGIV 107 (499)
Q Consensus 29 ~~~~~~~~a~~~~~~~~~~~~-~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~g~~pTP~~~fav~~~~~~gGI~ 107 (499)
+..+..+.|||+++.+.+ .+ +|+||||+|.+|++|++++++||+++|++|+++ |.+|||+++|++++++|++|||
T Consensus 22 ~~v~~~g~a~~~~l~~~~-~~~~VvVG~D~R~ss~~l~~a~~~gl~s~G~~V~~~---g~~pTP~~~~av~~~~a~~GIm 97 (443)
T 3i3w_A 22 EFTQKLGNAVGSLINQKN-YPKFVIVGQDTRSSGGFLKFALVSGLNAAGIDVLDL---GVVPTPVVAFMTVKHRAAAGFV 97 (443)
T ss_dssp HHHHHHHHHHHHHHHHTT-CCSEEEEEECSCTTHHHHHHHHHHHHHHHTCEEEEE---EECCHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHHHHHhcC-CCCeEEEEeCCCcCHHHHHHHHHHHHHHCCCeEEEe---CCCCHHHHHHHHHhcCCCeEEE
Confidence 444556789999998655 45 899999999999999999999999999999999 9999999999999999999999
Q ss_pred EcCCCCCCCCCCCceeEEEcCCCCCCChhHHHHHHHHHHhhhccCcCCCcccccccccCccccccCCcceEEEe-CcHHH
Q psy5979 108 LTASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITTQIKTYSIVPDLKVDITSIGSSSYEVDGAQFQVDVI-DSVEV 186 (499)
Q Consensus 108 ITaSHNP~~~~~~nGiK~~~~~G~~~~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~-d~~~~ 186 (499)
||||||| ++||||||++++|.+++++.+++|++.+.+ ++.+ ..+..+|. ++.. +..+.
T Consensus 98 ITASHNP---~~~NGiK~~~~~G~~l~~~~~~~Ie~~~~~--~~~~-----~~~~~~g~-----------~~~~~d~~~~ 156 (443)
T 3i3w_A 98 ITASHNK---FTDNGIKLFSSNGFKLDDALEEEVEDMIDG--DFIY-----QPQFKFGS-----------YKILANAIDE 156 (443)
T ss_dssp ECCTTSC---TTEEEEEEEETTSCBCCHHHHHHHHHHHTS--CCCC-----CTTSCCCC-----------EEECTTTTHH
T ss_pred EEECCCC---chhCeEEEEcCCCCcCCHHHHHHHHHHHhc--cccc-----cccccCcc-----------EEEChhHHHH
Confidence 9999999 899999999999999999999999988753 3321 12233343 3443 67899
Q ss_pred HHHHHHhhcCchhHHhhhcCCCCCCCcEEEEcCCCCCChHHHHHHHHHhcCCCcceeeecccCCCCCCCCCCCCcccHHH
Q psy5979 187 YLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINAMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDPNLTYAAD 266 (499)
Q Consensus 187 Y~~~l~~~i~~~~i~~~~~~~~~~~~lkVvvD~~~G~~~~~~~~il~~~lG~~~~~~v~~~~d~~F~~~~p~P~~~~l~~ 266 (499)
|++++++.++.. ++ .++ |||+||+||+++.+++++| ++|||+++ .+|++|||.||++.|. +.+++.
T Consensus 157 Y~~~l~~~~~~~-i~--------~~~-kivvD~~nG~~~~~~~~ll-~~lG~~v~-~~~~~pDg~f~n~~~~--~~~~~~ 222 (443)
T 3i3w_A 157 YIESIYSRFAKF-VN--------YKG-KVVVDCAHGAASHNFEALL-DKFGINYV-SIASNPDGLNINVGCG--ATCVSN 222 (443)
T ss_dssp HHHHHHHHHTTT-CC--------CCS-EEEEECTTSTTTTHHHHHH-HHTTCEEE-ESSCCCCSSCTTTTCS--TTCHHH
T ss_pred HHHHHHHhCchh-hc--------cCC-eEEEECCCChHHHHHHHHH-HHcCCEEE-EECCccCCCCCCCCCC--CCCHHH
Confidence 999999988631 22 257 9999999999999999999 99999987 6999999999876554 456778
Q ss_pred HHHHHHhCCCcEEEeeCCCCCeeEEEccCceEeCCCcHHHHHHHHHhcCchhhhcCccceeeeccchHHHHHHHHHCCCc
Q psy5979 267 LVQAMQAGDFDLGAAFDGDGDRNMVLGKKAFFVNPSDSLAVLAAHLDSIPYFKKTGVKGYARSMPTGAAVDRVAKANNKE 346 (499)
Q Consensus 267 l~~~v~~~~adlgia~D~DgDRl~vvd~~G~~l~~d~~~~lla~~ll~~~~~~~~~~~~vv~~~~ss~~l~~ia~~~g~~ 346 (499)
+.+.+++.+||+||++||||||++++|++|+++++|++++|++.++++. .+...||.|+.||..++++++++|++
T Consensus 223 l~~~v~~~~adlgia~DgDaDR~~~vd~~G~~l~gd~i~~lla~~l~~~-----~~~~~vv~tv~ss~~l~~~~~~~G~~ 297 (443)
T 3i3w_A 223 IKKAVKEQKADLGISLDGDADRIIIVDENGQEIDGDGILNILAQYSDIC-----GGTNGIVGTQMTNMSYENHYRANKIP 297 (443)
T ss_dssp HHHHHHHHTCSEEEEECTTSCBEEEECTTSCEECHHHHHHHHHHTTTTT-----TCCSCEEEETTSCHHHHHHHHHTTCC
T ss_pred HHHHHHhcCCcEEEEECCCCceEEEECCCCcEeChhHHHHHHHHHHHHh-----CCCCeEEEeecCchHHHHHHHHCCCe
Confidence 8899999999999999999999999999999999999999999998752 22246999999999999999999999
Q ss_pred EEEeecchhHHhhhhhccCceEEEEecCCC-CCCCccCCchHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCceEeeecc
Q psy5979 347 LFEVPTGWKYFGNLMDAGRLSLCGEESFGT-GSDHIREKDGIWAVLAWLSVVEHTGKPVEEILKSHWKQYGRNYFTRYDY 425 (499)
Q Consensus 347 v~~t~tG~k~i~~~~~~~~~~~g~Eesgg~-~~~~~~~~Dgi~a~l~lle~la~~~~~L~ell~~lp~~~g~~~~~~~~~ 425 (499)
+++||||||||+++|.+.+++||||+|||+ ++++.+++|||+++++++|+|+.++++|+|+++++|+ ++...++
T Consensus 298 ~~~t~~G~k~i~~~m~~~~~~~ggE~SG~~~~~~~~~~~Dgi~a~l~~le~l~~~g~~Lsel~~~~~~----~p~~~~~- 372 (443)
T 3i3w_A 298 FIRSKVGDRYVLEDLVKYGYKIGGESSGHVINLNFGTTGDGLFTAIQLLAIFSQADKPVSEFKLQGEL----MQQTLIN- 372 (443)
T ss_dssp EEEESSSTTHHHHHHHHHTCCEEECTTSBEEETTTCSSCCHHHHHHHHHHHTTTCSSCGGGTSCSSCC----CEEEEEE-
T ss_pred EEEEeChHHHHHHHHhhcCcEEEEEeeCcEEEcCcCcCCCHHHHHHHHHHHHHHcCCCHHHHHHhhhh----hcceEEE-
Confidence 999999999999999999999999999997 7899999999999999999999999999999998764 2333333
Q ss_pred ccCCc----hhHHHHHHHHHhhcCCCCcccccccCCCCcceecccCCCeEEEEeeCCeEEEEeecCCccccccee
Q psy5979 426 ENCSA----APCNQMMDELEKKVSAPEFKGVTLSAEGRSGSWWRQEKQGVRSAISQTGLVHIQIIRNRQFRRHVV 496 (499)
Q Consensus 426 ~~~~~----~~k~~vm~~l~~~~~~~~~~g~~~~~~~~~~~~~v~~iDGik~~~~d~~Wvlir~s~~~~~~~~~~ 496 (499)
+.|+. ..+.++.+.+.+.. .. +.++||+|||||++.|.=|.++
T Consensus 373 v~~~~~~~~~~~~~~~~~i~~~~------------------~~----------~~~~gw~lvR~SgTEP~~rv~~ 419 (443)
T 3i3w_A 373 VPLTKKVAREDLQKVASDVNDVE------------------KR----------LGNRGRVLLRPSGTEPVLRVMV 419 (443)
T ss_dssp EECSSCCCHHHHHTTHHHHHHHH------------------HH----------HGGGEEEEEEEETTEEEEEEEE
T ss_pred EEcCcccchhhHHHHHHHHHHHH------------------Hh----------cCCCcEEEEecCCCCceEEEEE
Confidence 35643 33333333333210 01 2345999999999999866554
No 12
>4hjh_A Phosphomannomutase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: SEP G6Q; 2.10A {Brucella melitensis BV}
Probab=100.00 E-value=1.2e-73 Score=608.23 Aligned_cols=395 Identities=18% Similarity=0.190 Sum_probs=326.0
Q ss_pred cccchhhHHHHHhhC---CCceEEEeecCCcchHHHHHHHHHHHHHCCCeEEEeCCCcccchhHHHHHHHHcCCccceEE
Q psy5979 32 YFGDVAVDKIIKISG---IRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQVTGGIVL 108 (499)
Q Consensus 32 ~~~~~a~~~~~~~~~---~~~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~g~~pTP~~~fav~~~~~~gGI~I 108 (499)
+..+.|||+++.+++ .+++|+||||+|.+|++|++++++||+++|++|+++ |.+|||+++|+++++++ +||||
T Consensus 30 ~~~~~a~a~~l~~~~~~~~~~~VvVG~D~R~ss~~~~~a~~~gl~a~Gi~V~~~---g~~pTP~l~fav~~~~~-~GImI 105 (481)
T 4hjh_A 30 YAYTMAFVQMLAAKGQLQKGDKVFVGRDLRPSSPDIAALAMGAIEDAGFTPVNC---GVLPTPALSYYAMGAKA-PSIMV 105 (481)
T ss_dssp HHHHHHHHHHHHHTTSCCTTCEEEEEECSSTTHHHHHHHHHHHHHHTTCEEEEE---EECCHHHHHHHHHHTTC-CEEEE
T ss_pred HHHHHHHHHHHHhhccccCCCeEEEeecCCcCHHHHHHHHHHHHHHCCCEEEEe---CCcCcHHHHHHHHhcCC-ceEEE
Confidence 345789999997654 467899999999999999999999999999999998 99999999999999998 79999
Q ss_pred cCCCCCCCCCCCceeEEEcCCCCCCChhHHHHHHHHHHhhhccCcCCCcccccccccCccccccCCcceEEEeCcHHH-H
Q psy5979 109 TASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITTQIKTYSIVPDLKVDITSIGSSSYEVDGAQFQVDVIDSVEV-Y 187 (499)
Q Consensus 109 TaSHNP~~~~~~nGiK~~~~~G~~~~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~d~~~~-Y 187 (499)
|||||| ++||||||++++|.+ .++.+++|++.+.. +.+. ......+|. ...+..+. |
T Consensus 106 TASHNP---~~~NGiK~~~~~G~~-~~~~e~~I~~~~~~---~~~~---~~~~~~~g~------------~~~d~~~~~Y 163 (481)
T 4hjh_A 106 TGSHIP---DDRNGLKFYRRDGEI-DKDDEAAISAAYRK---LPAI---LAARKHVGS------------TETDAALQAY 163 (481)
T ss_dssp CCTTSC---TTEEEEEEEETTEEC-CHHHHHHHHHHHHT---CCC----CCCCCCCCS------------CCCCHHHHHH
T ss_pred ecCCCC---CCCCCEEEeCCCCCC-CCHHHHHHHHHHhh---hccc---cccccccCc------------ccccccHHHH
Confidence 999999 799999999999964 56667788876542 2110 000011221 12356788 9
Q ss_pred HHHHHhhcCchhHHhhhcCCCCCCCcEEEEcCCCCCChHHHHHHHHHhcCCCcceeeecccCCCCCCCCCCC-CcccHHH
Q psy5979 188 LQLMKEIFDFPKLQSLIKGSSGRPPFKLLINAMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDP-NLTYAAD 266 (499)
Q Consensus 188 ~~~l~~~i~~~~i~~~~~~~~~~~~lkVvvD~~~G~~~~~~~~il~~~lG~~~~~~v~~~~d~~F~~~~p~P-~~~~l~~ 266 (499)
++.+++.++.+.+ +++||+|||+||+++.+++++| ++|||+++ .+++ +++|++++|+| +++++..
T Consensus 164 i~~~~~~~~~~~~----------~~lkivvd~~~Ga~~~~~~~~l-~~lG~~v~-~l~~--~~~f~~~~~~p~~~e~l~~ 229 (481)
T 4hjh_A 164 ADRYAGFLGKGSL----------NGLRVGVYQHSSVARDLLMYLL-TTLGVEPV-ALGR--SDIFVPVDTEALRPEDIAL 229 (481)
T ss_dssp HHHHHHHHCTTTT----------TTCEEEEEEETCTTHHHHHHHH-HHTTCEEE-EEEE--CSSCCCCCTTSCCHHHHHH
T ss_pred HHHHHHhcCcccc----------cCCEEEEECCCChHHHHHHHHH-HHcCCeEE-EecC--CCCCCCCCCCCCCHHHHHH
Confidence 9999998875433 4799999999999999999999 99999976 5775 57899988887 5678999
Q ss_pred HHHHHHhCCCcEEEeeCCCCCeeEEEccCceEeCCCcHHHHHHHHHhcCchhhhcCccceeeeccchHHHHHHHHHCCCc
Q psy5979 267 LVQAMQAGDFDLGAAFDGDGDRNMVLGKKAFFVNPSDSLAVLAAHLDSIPYFKKTGVKGYARSMPTGAAVDRVAKANNKE 346 (499)
Q Consensus 267 l~~~v~~~~adlgia~D~DgDRl~vvd~~G~~l~~d~~~~lla~~ll~~~~~~~~~~~~vv~~~~ss~~l~~ia~~~g~~ 346 (499)
+.+.|++.+||+||++||||||++++|++|+++++|++++|+++++. . ..|+.|++||.+++++ +| +
T Consensus 230 l~~~v~~~~aDlgia~DgDaDR~~vvd~~G~~i~gd~l~~L~a~~l~-------~--~~vv~~v~ss~~l~~~---~~-~ 296 (481)
T 4hjh_A 230 LAQWGKSDRLDAIVSTDGDADRPLIADEHGQFVRGDLAGAITATWVG-------A--DTLVTPVTSNTALESR---FP-K 296 (481)
T ss_dssp HHHHHTSTTCSEEEEECTTSSSEEEECTTSCEECHHHHHHHHHHHTT-------C--SEEEEETTSCTTHHHH---CS-C
T ss_pred HHHHHHhcCCCEEEEECCCCCceEEEcCCCCEEChHHHHHHHHHHhh-------c--CcEEEEEcChHHHHHh---cC-c
Confidence 99999999999999999999999999999999999999999998863 1 2588899999999887 56 9
Q ss_pred EEEeecchhHHhhhhhc-----cCceEEEEecCCC-CCC----------CccCCchHHHHHHHHHHHHHcCCCHHHHHHH
Q psy5979 347 LFEVPTGWKYFGNLMDA-----GRLSLCGEESFGT-GSD----------HIREKDGIWAVLAWLSVVEHTGKPVEEILKS 410 (499)
Q Consensus 347 v~~t~tG~k~i~~~~~~-----~~~~~g~Eesgg~-~~~----------~~~~~Dgi~a~l~lle~la~~~~~L~ell~~ 410 (499)
+++|+||||||.++|++ .+++||||||||+ +++ +.+++||++++++++|+|++++++|++++++
T Consensus 297 ~~~t~vG~~~i~~~m~~~~~~g~~~~~GgEeSgg~~~~~~~~~d~~~~~~~~~~Dgi~a~l~~le~~a~~g~~Lsell~~ 376 (481)
T 4hjh_A 297 VLRTRVGSPYVIASMAQVSTGNSGPVIGFEANGGVLLGSTVERNGRSLTALPTRDALLPILACLATVHEKKTPLSTIARS 376 (481)
T ss_dssp EEEECSSHHHHHHHHHHCC----CCEEEECTTCCEEECSCEEETTEEECCEEEEESHHHHHHHHHHHHHHTCCHHHHHHT
T ss_pred eEEeccchHHHHHHHHHhhccCCCeEEEEeCCCCEEECchhcccccccccCCCccHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 99999999999999987 4799999999997 444 3468999999999999999999999999999
Q ss_pred HHHHhCCceEeeeccccCCchhHHHHHHHHHhhc-CC--CCcccccccCCCCcceecccCCCeEEEEeeCCeEEEEeecC
Q psy5979 411 HWKQYGRNYFTRYDYENCSAAPCNQMMDELEKKV-SA--PEFKGVTLSAEGRSGSWWRQEKQGVRSAISQTGLVHIQIIR 487 (499)
Q Consensus 411 lp~~~g~~~~~~~~~~~~~~~~k~~vm~~l~~~~-~~--~~~~g~~~~~~~~~~~~~v~~iDGik~~~~d~~Wvlir~s~ 487 (499)
||++|+ +..+. ..|++++|+++|++|++.. +. ....| ...+++++||+|+.|+||+|+|||||+
T Consensus 377 l~~~~~--~~~~~--~~~~~~~~~~~m~~l~~~~~~~~~~~~~g---------~~~~v~~~DGlri~~~dg~wvlvRpSg 443 (481)
T 4hjh_A 377 YGFRVA--LSDRL--QNIPQEASTAFLALLEDADKRASLFPAGD---------AIVRVETIDGVKLFFQSGNAVHYRASG 443 (481)
T ss_dssp TCCCEE--EEEEE--ESCCHHHHHHHHHHTTSHHHHHHHSCTTS---------CEEEEECSSSEEEEETTSCEEEEEECS
T ss_pred HHHHhC--Cceee--cCCCHHHHHHHHHHHHhcCChHHHHhhcC---------ccccccCCCeEEEEecCCcEEEEecCC
Confidence 998766 22222 3689999999999997762 00 00011 014689999999999997899999999
Q ss_pred Ccccc
Q psy5979 488 NRQFR 492 (499)
Q Consensus 488 ~~~~~ 492 (499)
+.|-=
T Consensus 444 TEP~l 448 (481)
T 4hjh_A 444 NAPEL 448 (481)
T ss_dssp SSSEE
T ss_pred CCceE
Confidence 99853
No 13
>2dka_A Phosphoacetylglucosamine mutase; isomerase; 1.93A {Candida albicans} PDB: 2dkc_A* 2dkd_A*
Probab=100.00 E-value=6.4e-53 Score=454.53 Aligned_cols=364 Identities=16% Similarity=0.151 Sum_probs=244.7
Q ss_pred HHHcC-CccceEEcCCCCCCCCCCCceeEEEcCCCCCCChhHH---------------------HHHHH----HHHhhhc
Q psy5979 97 IRKHQ-VTGGIVLTASHNPGGPDNDFGIKFNTSNGGPAPDAVT---------------------ENIYK----ITTQIKT 150 (499)
Q Consensus 97 v~~~~-~~gGI~ITaSHNP~~~~~~nGiK~~~~~G~~~~~~~~---------------------~~Ie~----~~~~~~~ 150 (499)
+++++ +++|||||||||| ++||||||++++|.+++++++ ++|++ ++.. ++
T Consensus 51 ~~~~~~~~~GImITASHNP---~~dNGiK~~~~~G~~l~~~~e~~~~~~an~~~~~~~~~~~~~~~I~~~i~~~~~~-~~ 126 (544)
T 2dka_A 51 SKYLQGKTVGVMITASHNP---PEDNGVKVVDPLGSMLESSWEKYATDLANASPSPSNDSEGEKNSLVEVIKNLVSD-LK 126 (544)
T ss_dssp HHHTTTCEEEEEECCC-CC---TTEEEEEEECTTSSBCCGGGHHHHHHHHHSBSCC------CTTBHHHHHHHHHHH-TT
T ss_pred HHhcCCcCceEEEeCCCCC---cccCceeeecCCCCcCCHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHhh-hc
Confidence 57778 9999999999999 799999999999999999998 66666 3322 22
Q ss_pred cCcCC--------CcccccccccCcc-ccccCCcce-EEEe---------------------C-cHHHHHHHHHhhcCc-
Q psy5979 151 YSIVP--------DLKVDITSIGSSS-YEVDGAQFQ-VDVI---------------------D-SVEVYLQLMKEIFDF- 197 (499)
Q Consensus 151 ~~~~~--------~~~~~~~~ig~~~-~~~~~~~~~-~~~~---------------------d-~~~~Y~~~l~~~i~~- 197 (499)
+.... +.+.....+.+.- -.+....+. +..+ + ..+.|++.+++.++.
T Consensus 127 ~~~~~~~~v~vg~d~r~s~~~l~~al~~gl~~~~G~~v~~~G~~ttP~l~~~v~~~~~~~~g~~~~~~Y~~~l~~~~~~~ 206 (544)
T 2dka_A 127 IDLSIPANVVIARDSRESSPALSMATIDGFQSVPNTKYQDFGLFTTPELHYVTRTLNDPDFGKPTEDGYYSKLAKSFQEI 206 (544)
T ss_dssp CCTTSCEEEEEEECSCTTHHHHHHHHHHHHHTSSSEEEEEEEECCHHHHHHHHHHHHCGGGCCSSHHHHHHHHHHHHHHH
T ss_pred CCcccCceEEeccCCCCCCHHHHHHHHhhhhhhcCCeEEEecccccchheeeeeeccccccCCccHHHHHHHHHHHHHHH
Confidence 21000 0000000000000 000000010 1222 3 577999999987641
Q ss_pred hhHHhhhcCCCCCCCcEEEEcCCCCCChHHHHHH-HHHhc--CCCcceeeeccc-CCCCCCCCCCCCcccHHHHHH---H
Q psy5979 198 PKLQSLIKGSSGRPPFKLLINAMHGVTGPYVKKI-FLEEL--GAQPDNAVNTTP-LPDFGGHHPDPNLTYAADLVQ---A 270 (499)
Q Consensus 198 ~~i~~~~~~~~~~~~lkVvvD~~~G~~~~~~~~i-l~~~l--G~~~~~~v~~~~-d~~F~~~~p~P~~~~l~~l~~---~ 270 (499)
..+.. .+ .+++||++||+||+++.+++++ | ++| ||+++ .+|++| ||.|+++.|.|. ....+.. .
T Consensus 207 ~~~~~-~~----~~~lkIvvD~~nGag~~~~~~i~l-~~L~~G~~v~-~ln~~~dd~~~~n~~~~~~--~~~~~~~~~~~ 277 (544)
T 2dka_A 207 YTICE-SN----NEKIDITIDAANGVGAPKIQELLE-KYLHKEISFT-VVNGDYKQPNLLNFDCGAD--YVKTNQKLPKN 277 (544)
T ss_dssp HTC----------CCEEEEEECTTSTHHHHHHHHHH-HHSTTTEEEE-EESCCTTCGGGTTSSCSHH--HHHHHCSCCTT
T ss_pred Hhhhh-cc----CCCCEEEEECCCcHHHHHHHHHHH-HHhcCCceEE-EEcCcCCCCCcCCCCCCcc--chhhhhhhhhh
Confidence 11110 01 1469999999999999999999 8 999 89886 699999 799987666553 3333322 2
Q ss_pred HHhCCCcEEEeeCCCCCeeEEE--ccCc--eEeCCCcHHHHHHHHHhcCchhhhcC------ccceeeecc-chHHHHHH
Q psy5979 271 MQAGDFDLGAAFDGDGDRNMVL--GKKA--FFVNPSDSLAVLAAHLDSIPYFKKTG------VKGYARSMP-TGAAVDRV 339 (499)
Q Consensus 271 v~~~~adlgia~D~DgDRl~vv--d~~G--~~l~~d~~~~lla~~ll~~~~~~~~~------~~~vv~~~~-ss~~l~~i 339 (499)
+....+|+|+++||||||++++ |++| +++++|++++|++.++++. ....+ ...||.|++ ++.+.+.+
T Consensus 278 ~~~~~aDlGiA~DgDaDR~~iv~~D~~G~~~~l~gd~i~aLla~~l~~~--~~~~~~~~~~~~~~vv~tv~sn~~~~~~i 355 (544)
T 2dka_A 278 VKPVNNKLYASFDGDADRLICYYQNNDNKFKLLDGDKLSTLFALFLQQL--FKQIDPTKISLNIGVVQTAYANGSSTKYV 355 (544)
T ss_dssp CCCCBTCCEEEECTTSCCEEEEEECTTSCEEEECHHHHHHHHHHHHHHH--HTTSCTTTCCCCEEEEECTTSCHHHHHHH
T ss_pred hhcccccEEEEECCCCCceEEEEEcCCCCeEEeCHHHHHHHHHHHHHHh--cccCCCcccccCCcEEEEeccccHHHHHH
Confidence 3346789999999999999999 9999 5899999999999999752 00011 235888866 55555556
Q ss_pred HHHCCCcEEEeecchhHHhhhhhccCceEEEEecCC--C-CCCCc------------------------------cCCch
Q psy5979 340 AKANNKELFEVPTGWKYFGNLMDAGRLSLCGEESFG--T-GSDHI------------------------------REKDG 386 (499)
Q Consensus 340 a~~~g~~v~~t~tG~k~i~~~~~~~~~~~g~Eesgg--~-~~~~~------------------------------~~~Dg 386 (499)
++.+|+++++||||||||+++|.+.++.||||+||| + ++++. .++||
T Consensus 356 ~~~~G~~v~~t~vG~k~v~~~m~~~~~~~ggE~sGhg~~if~~~~~~~~~~~~~~~~~~kd~~~~~~~~~~l~a~~tgd~ 435 (544)
T 2dka_A 356 EDVLKIPVRCTPTGVKHLHHEAENFDIGVYFEANGHGTVIFNPEAEKKIFDYKPNNDNEAKAIKVLQNFSQLINQTVGDA 435 (544)
T ss_dssp HHTSCCCEEECCSSHHHHHHHHTTSSEEEEECTTSCEEEEECHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHSCSSSCCH
T ss_pred HHHcCCceEEEeCcHHHHHHHHHhcCCcEEEcccCCeeEEECchhhhhhcccccCChhHHHHHHHHHHHHHHhhcccCCC
Confidence 655999999999999999999999999999999998 6 56652 56999
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCceEeeeccccCCchhHHHHHHHHHhhcCCCCcccccccCCCCcceeccc
Q psy5979 387 IWAVLAWLSVVEHTGKPVEEILKSHWKQYGRNYFTRYDYENCSAAPCNQMMDELEKKVSAPEFKGVTLSAEGRSGSWWRQ 466 (499)
Q Consensus 387 i~a~l~lle~la~~~~~L~ell~~lp~~~g~~~~~~~~~~~~~~~~k~~vm~~l~~~~~~~~~~g~~~~~~~~~~~~~v~ 466 (499)
+.+++++++++++.|++|++++..++. | ..... .+.|++..+.++|+...+ ...+ ....+
T Consensus 436 l~~~l~vl~~~~~~g~~lsel~~~~~~-~---p~~~~-~v~v~~~~~~~~~~~~~~-~~~~--------------~~~~~ 495 (544)
T 2dka_A 436 ISDLLAVLIVVHYLKLSPSDWDNEYTD-L---PNKLV-KVIVPDRSIFKTTNAERT-LVEP--------------KGMQD 495 (544)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHTTSCC-C---CEEEE-EC-------CCCCTTTC--CC-C--------------TTHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHhhhhc-c---Cchhh-ccccchhhhhhHHHhhhh-hcCc--------------hhhhc
Confidence 999999999999999999999987653 2 22233 345766544333322111 1000 02467
Q ss_pred CCCeEEEEeeCCeEEEEeecCCccccccee
Q psy5979 467 EKQGVRSAISQTGLVHIQIIRNRQFRRHVV 496 (499)
Q Consensus 467 ~iDGik~~~~d~~Wvlir~s~~~~~~~~~~ 496 (499)
.+||+|+.|++ ||+|||||++.|.=|.++
T Consensus 496 ~iDGv~~~~~~-gw~lvRpSGTEP~lRvy~ 524 (544)
T 2dka_A 496 EIDKLVAQYPN-GRSFVRASGTEDAVRVYA 524 (544)
T ss_dssp HHHHHHTTSTT-CEEEEEEC----CEEEEE
T ss_pred ccceEEEEcCC-EEEEEEcCCCCCEEEEEE
Confidence 89999999975 899999999999655543
No 14
>1wjw_A Phosphoacetylglucosamine mutase; carbohydrate metabolism, structural genomics, riken structural genomics/proteomics initiative, RSGI, isomerase; NMR {Mus musculus} SCOP: d.129.2.1
Probab=97.51 E-value=2.1e-06 Score=72.35 Aligned_cols=32 Identities=3% Similarity=0.005 Sum_probs=27.3
Q ss_pred cccCCCeEEEEeeCCeEEEEeecCCccccccee
Q psy5979 464 WRQEKQGVRSAISQTGLVHIQIIRNRQFRRHVV 496 (499)
Q Consensus 464 ~v~~iDGik~~~~d~~Wvlir~s~~~~~~~~~~ 496 (499)
.++.+||+|+.|+ +||+|||||++.|-=|.++
T Consensus 43 ~~~~idgl~~~~~-~gwvlvRpSGTEP~irvy~ 74 (112)
T 1wjw_A 43 LQEAINDLVKKYT-LARAFVRPSGTEDIVRVYA 74 (112)
T ss_dssp HHHHHHHHHHHSS-SEEEEEECSSSSSSEEEEE
T ss_pred hhhhhhcEEEEcC-CcEEEEEeCCCccEEEEEE
Confidence 5889999999995 4899999999999766554
No 15
>2dka_A Phosphoacetylglucosamine mutase; isomerase; 1.93A {Candida albicans} PDB: 2dkc_A* 2dkd_A*
Probab=97.11 E-value=0.00039 Score=74.47 Aligned_cols=52 Identities=15% Similarity=0.108 Sum_probs=48.1
Q ss_pred CceEEEeecCCcchHHHHHHHHHHHHHC-CCeEEEeCCCcccchhHHHHHHHHcCC
Q psy5979 48 RSVLVVGGDGRYFGDVAVDKIIKISAAN-GVAKLIVGQNGILSTPAVSALIRKHQV 102 (499)
Q Consensus 48 ~~~VvVg~D~R~~s~~~a~a~a~gL~s~-Gi~V~~~~~~g~~pTP~~~fav~~~~~ 102 (499)
.++|+||||+|.+|+.+++++.++|.+. |.+|.++ |.++||+++|+++..+.
T Consensus 132 ~~~v~vg~d~r~s~~~l~~al~~gl~~~~G~~v~~~---G~~ttP~l~~~v~~~~~ 184 (544)
T 2dka_A 132 PANVVIARDSRESSPALSMATIDGFQSVPNTKYQDF---GLFTTPELHYVTRTLND 184 (544)
T ss_dssp CEEEEEEECSCTTHHHHHHHHHHHHHTSSSEEEEEE---EECCHHHHHHHHHHHHC
T ss_pred CceEEeccCCCCCCHHHHHHHHhhhhhhcCCeEEEe---cccccchheeeeeeccc
Confidence 3679999999999999999999999999 9999998 99999999999987754
No 16
>1o1x_A Ribose-5-phosphate isomerase RPIB; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.90A {Thermotoga maritima} SCOP: c.121.1.1
Probab=85.92 E-value=2 Score=37.46 Aligned_cols=59 Identities=14% Similarity=0.143 Sum_probs=39.8
Q ss_pred ceEEEeecCCcchHHHHHHHHHHHHHCCCeEEEeCC--CcccchhHHHHHHH----HcCCccceEEc
Q psy5979 49 SVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQ--NGILSTPAVSALIR----KHQVTGGIVLT 109 (499)
Q Consensus 49 ~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~--~g~~pTP~~~fav~----~~~~~gGI~IT 109 (499)
-+|+||.| +.+-.+++.+.+-|.+.|.+|.|++. ...+.-|-+...+- .-.++-||.|.
T Consensus 13 ~~i~igsD--haG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliC 77 (155)
T 1o1x_A 13 VKIAIASD--HAAFELKEKVKNYLLGKGIEVEDHGTYSEESVDYPDYAKKVVQSILSNEADFGILLC 77 (155)
T ss_dssp CEEEEEEC--STTHHHHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHTTSCSEEEEEE
T ss_pred eeEEEeeC--chHHHHHHHHHHHHHHCCCEEEEeCCCCCCCCChHHHHHHHHHHHHcCCCceEEEEc
Confidence 47899998 46789999999999999999999931 11233555544432 33444455553
No 17
>2vvp_A Ribose-5-phosphate isomerase B; RPIB, RV2465C, RARE sugar, carbohydrate metabolism, pentose phosphate pathway; HET: R52 5RP; 1.65A {Mycobacterium tuberculosis} SCOP: c.121.1.1 PDB: 2vvo_A* 2vvq_A* 2bes_A* 2bet_A* 1usl_A
Probab=84.08 E-value=2.4 Score=37.33 Aligned_cols=59 Identities=22% Similarity=0.174 Sum_probs=39.9
Q ss_pred eEEEeecCCcchHHHHHHHHHHHHHCCCeEEEeCC--Cc-ccchhHHHHHH----HHcCCccceEEcC
Q psy5979 50 VLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQ--NG-ILSTPAVSALI----RKHQVTGGIVLTA 110 (499)
Q Consensus 50 ~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~--~g-~~pTP~~~fav----~~~~~~gGI~ITa 110 (499)
+|+||.| +++..+++.+.+-|.+.|++|.|++. .. .+.-|-+...+ ..-.++-||.|..
T Consensus 5 kIaigsD--haG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCG 70 (162)
T 2vvp_A 5 RVYLGAD--HAGYELKQRIIEHLKQTGHEPIDCGALRYDADDDYPAFCIAAATRTVADPGSLGIVLGG 70 (162)
T ss_dssp EEEEEEC--HHHHHHHHHHHHHHHHTTCEEEECSCCSCCTTCCHHHHHHHHHHHHHHSTTCEEEEEES
T ss_pred EEEEEeC--chhHHHHHHHHHHHHHCCCEEEEeCCCCCCCCCChHHHHHHHHHHHHcCCCceEEEEeC
Confidence 6889988 56789999999999999999999931 01 33455544433 3334455555533
No 18
>2vvr_A Ribose-5-phosphate isomerase B; RPIB, carbohydrate metabolism, pentose phosphate pathway; 2.10A {Escherichia coli} PDB: 1nn4_A
Probab=83.51 E-value=2 Score=37.34 Aligned_cols=31 Identities=19% Similarity=0.234 Sum_probs=27.3
Q ss_pred eEEEeecCCcchHHHHHHHHHHHHHCCCeEEEe
Q psy5979 50 VLVVGGDGRYFGDVAVDKIIKISAANGVAKLIV 82 (499)
Q Consensus 50 ~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~ 82 (499)
+|+||.|. ++..+++.+..-|.+.|++|.|+
T Consensus 3 kIaigsDh--aG~~lK~~i~~~L~~~G~eV~D~ 33 (149)
T 2vvr_A 3 KIAFGCDH--VGFILKHEIVAHLVERGVEVIDK 33 (149)
T ss_dssp EEEEEECT--TGGGGHHHHHHHHHHTTCEEEEC
T ss_pred EEEEEeCc--hhHHHHHHHHHHHHHCCCEEEEe
Confidence 58899884 56788999999999999999999
No 19
>3s5p_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.30A {Giardia lamblia}
Probab=81.91 E-value=3.6 Score=36.29 Aligned_cols=32 Identities=13% Similarity=0.025 Sum_probs=29.0
Q ss_pred ceEEEeecCCcchHHHHHHHHHHHHHCCCeEEEe
Q psy5979 49 SVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIV 82 (499)
Q Consensus 49 ~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~ 82 (499)
-+|+||.|. .+-.+|+.+.+-|.+.|++|.|+
T Consensus 22 MkIaIgsDh--aG~~lK~~i~~~L~~~G~eV~D~ 53 (166)
T 3s5p_A 22 MKVAFASDH--GGRDLRMFLQQRASAHGYEVMDL 53 (166)
T ss_dssp CEEEEEECG--GGHHHHHHHHHHHHHTTCEEEEE
T ss_pred eEEEEEECc--hHHHHHHHHHHHHHHCCCEEEEc
Confidence 379999995 66899999999999999999999
No 20
>3he8_A Ribose-5-phosphate isomerase; CTRPI B, isomerization; 1.90A {Clostridium thermocellum} PDB: 3hee_A*
Probab=80.27 E-value=5.5 Score=34.55 Aligned_cols=46 Identities=15% Similarity=0.174 Sum_probs=33.4
Q ss_pred eEEEeecCCcchHHHHHHHHHHHHHCCCeEEEeCCC--cccchhHHHHHH
Q psy5979 50 VLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQN--GILSTPAVSALI 97 (499)
Q Consensus 50 ~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~--g~~pTP~~~fav 97 (499)
+|+||.|. .+-.+++.+.+-|.+.|++|.|++.. ..+.-|-+...+
T Consensus 2 kI~igsDh--aG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~v 49 (149)
T 3he8_A 2 KIGIGSDH--GGYNLKREIADFLKKRGYEVIDFGTHGNESVDYPDFGLKV 49 (149)
T ss_dssp EEEEEECG--GGHHHHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHH
T ss_pred EEEEEECc--hhHHHHHHHHHHHHHCCCEEEEcCCCCCCCCCHHHHHHHH
Confidence 58888884 67899999999999999999999311 123345555443
No 21
>3ph3_A Ribose-5-phosphate isomerase; alpha-beta-alpha sandwich fold; HET: RB5; 2.07A {Clostridium thermocellum} SCOP: c.121.1.1 PDB: 3ph4_A*
Probab=77.58 E-value=7.1 Score=34.50 Aligned_cols=48 Identities=15% Similarity=0.162 Sum_probs=34.2
Q ss_pred CceEEEeecCCcchHHHHHHHHHHHHHCCCeEEEeCCC--cccchhHHHHHH
Q psy5979 48 RSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQN--GILSTPAVSALI 97 (499)
Q Consensus 48 ~~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~--g~~pTP~~~fav 97 (499)
.=+|+||.|. .+-.+++.+.+-|.+.|++|.|++.. ..+.-|-+...+
T Consensus 20 ~MkIaIgsDh--aG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~v 69 (169)
T 3ph3_A 20 HMKIGIGSDH--GGYNLKREIADFLKKRGYEVIDFGTHGNESVDYPDFGLKV 69 (169)
T ss_dssp -CEEEEEECG--GGHHHHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHH
T ss_pred CCEEEEEeCc--hHHHHHHHHHHHHHHCCCEEEEcCCCCCCCCCHHHHHHHH
Confidence 4479999995 55679999999999999999999311 123345555443
No 22
>1kfi_A Phosphoglucomutase 1; parafusin, phosphoprotein PP63, exocytosis, isomerase; 2.40A {Paramecium tetraurelia} SCOP: c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1 PDB: 1kfq_A
Probab=72.54 E-value=5.5 Score=42.45 Aligned_cols=68 Identities=40% Similarity=0.605 Sum_probs=43.9
Q ss_pred CchhhHHHHHHHhhc-CCCCCC-eEEEeCCcccccc---hhhHHHHHhhCCCceEEEeecCCcchHHHHHHHHH
Q psy5979 2 HYTENFIQSILTALG-DKLKGS-VLVVGGDGRYFGD---VAVDKIIKISGIRSVLVVGGDGRYFGDVAVDKIIK 70 (499)
Q Consensus 2 ~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~---~a~~~~~~~~~~~~~VvVg~D~R~~s~~~a~a~a~ 70 (499)
.+..++.+|+++++. .+.++. .|+||+|+|+.|. .+.+..+...|.+ .+.+..+.-...|+++-++..
T Consensus 37 ~~~~~~~~a~~~~l~~~~~~~~~~VvIG~D~R~sS~~~a~~~a~~l~a~Gi~-V~~~~~~G~~pTP~l~fav~~ 109 (572)
T 1kfi_A 37 NYLENFVQSIFNTLRKDELKPKNVLFVGGDGRYFNRQAIFSIIRLAYANDIS-EVHVGQAGLMSTPASSHYIRK 109 (572)
T ss_dssp THHHHHHHHHHHHSCGGGSSSSCEEEEEECCCTTHHHHHHHHHHHHHHTTCS-EEEEEGGGCBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhccCCCCEEEEEecCCCCHHHHHHHHHHHHHHCCCE-EEEecCCCCCChHHHHHHHHH
Confidence 356677888887775 234566 8999999999663 3455555544332 244445566777888877754
No 23
>1p5d_X PMM, phosphomannomutase; alpha/beta protein, phosphohexomutase, phosphoserine, enzyme complex, enzyme-metal complex, isomerase; HET: SEP G1P; 1.60A {Pseudomonas aeruginosa} SCOP: c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1 PDB: 1k35_A* 1p5g_X* 1pcj_X* 1pcm_X* 1k2y_X* 2h5a_X* 2h4l_X* 2fkf_A* 3rsm_A 3bkq_X* 3c04_A* 2fkm_X*
Probab=66.70 E-value=2.1 Score=44.32 Aligned_cols=33 Identities=30% Similarity=0.356 Sum_probs=26.7
Q ss_pred CchhhHHHHHHHhhcCCC---CCCeEEEeCCccccc
Q psy5979 2 HYTENFIQSILTALGDKL---KGSVLVVGGDGRYFG 34 (499)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 34 (499)
.+|++++..|++|+.+-+ .+..|+||+|+|+-+
T Consensus 26 ~~t~~~~~~i~~a~~~~l~~~~~~~VvVG~D~R~ss 61 (463)
T 1p5d_X 26 TLTAETAYWIGRAIGSESLARGEPCVAVGRDGRLSG 61 (463)
T ss_dssp TBCHHHHHHHHHHHHHHHHHTTCCEEEEEECSCTTH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCeEEEEECCCCCH
Confidence 589999999999986433 257899999999844
No 24
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=65.13 E-value=15 Score=31.96 Aligned_cols=66 Identities=15% Similarity=0.181 Sum_probs=38.9
Q ss_pred hHHHHHhhCCCceEEEee---cCCcchHHHHHHHHHHHHHCCCeEEEeCCCcccchhHHHHHHHHcCCccceEEc
Q psy5979 38 VDKIIKISGIRSVLVVGG---DGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQVTGGIVLT 109 (499)
Q Consensus 38 ~~~~~~~~~~~~~VvVg~---D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~g~~pTP~~~fav~~~~~~gGI~IT 109 (499)
|..+....+..++|+++. |.+.-+..+ ++..|..+|++|++++ ..+|...+.-++.+.+++ -|.++
T Consensus 8 ~~~~~~~~~~~~~vlla~~~gd~HdiG~~~---va~~l~~~G~eVi~lG--~~~p~e~lv~aa~~~~~d-iV~lS 76 (161)
T 2yxb_A 8 RERVLGTPRRRYKVLVAKMGLDGHDRGAKV---VARALRDAGFEVVYTG--LRQTPEQVAMAAVQEDVD-VIGVS 76 (161)
T ss_dssp --------CCSCEEEEEEESSSSCCHHHHH---HHHHHHHTTCEEECCC--SBCCHHHHHHHHHHTTCS-EEEEE
T ss_pred HHHHHhhcCCCCEEEEEeCCCCccHHHHHH---HHHHHHHCCCEEEECC--CCCCHHHHHHHHHhcCCC-EEEEE
Confidence 333444445567787764 777776554 4456889999999982 346666677777776654 34443
No 25
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=64.50 E-value=18 Score=36.60 Aligned_cols=72 Identities=14% Similarity=0.122 Sum_probs=49.0
Q ss_pred hhhHHHHHhhCCCceEEEeecCCcc-hHHHHHHHHHHHHHCCCeEEEeCCCcccchhHHHHHHHHcCCccceEE
Q psy5979 36 VAVDKIIKISGIRSVLVVGGDGRYF-GDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQVTGGIVL 108 (499)
Q Consensus 36 ~a~~~~~~~~~~~~~VvVg~D~R~~-s~~~a~a~a~gL~s~Gi~V~~~~~~g~~pTP~~~fav~~~~~~gGI~I 108 (499)
..|-.+-......++|+|-|++... .+.+|++++++|.+.|+++..+. .--+..+-++..+...--..||.+
T Consensus 253 ~~Y~~w~~~~~~~~~v~I~Y~S~yGnTe~mA~~ia~gl~~~Gv~~~~~~-~~d~~~~~~s~i~~~i~~~~~ivl 325 (410)
T 4dik_A 253 NHYVSVAKGDPKKGKVTVIYDSMYGFVENVMKKAIDSLKEKGFTPVVYK-FSDEERPAISEILKDIPDSEALIF 325 (410)
T ss_dssp HHHHHHHHTCCCTTEEEEEEECSSSHHHHHHHHHHHHHHHTTCEEEEEE-ECSSCCCCHHHHHHHSTTCSEEEE
T ss_pred HHHHHhhcccccccceeeEEecccChHHHHHHHHHHHHHhcCCceEEEE-eccCCCCCHHHHHHHHHhCCeEEE
Confidence 5687777655667789999999764 58899999999999999876431 012333334555554433346666
No 26
>2ppw_A Conserved domain protein; the putative RPIB, PSI-2, protein initiative, MCSG, structural genomics, midwest center for S genomics; HET: MSE; 2.01A {Streptococcus pneumoniae}
Probab=63.10 E-value=10 Score=34.87 Aligned_cols=34 Identities=6% Similarity=0.073 Sum_probs=27.9
Q ss_pred ceEEEeecCCcch--HHHHHHHHHHHHHCCCeEEEe
Q psy5979 49 SVLVVGGDGRYFG--DVAVDKIIKISAANGVAKLIV 82 (499)
Q Consensus 49 ~~VvVg~D~R~~s--~~~a~a~a~gL~s~Gi~V~~~ 82 (499)
=+|+||.|....- ..+++.+..-|.+.|++|.|+
T Consensus 4 MkIaIgsDha~~lKn~ilk~~i~~~L~~~G~eV~D~ 39 (216)
T 2ppw_A 4 MKIALINENSQASKNHIIYDSLKEATDKKGYQLFNY 39 (216)
T ss_dssp CEEEECCCTTTGGGHHHHHHHHHHHHHHHTCEEEEC
T ss_pred cEEEEEcCChHhhhhhhHHHHHHHHHHHCCCEEEEe
Confidence 4799999988322 236789999999999999999
No 27
>3k7p_A Ribose 5-phosphate isomerase; pentose phosphate pathway, type B ribose 5-phosphate isomera (RPIB), R5P; 1.40A {Trypanosoma cruzi} SCOP: c.121.1.0 PDB: 3k7s_A* 3k7o_A* 3k8c_A* 3m1p_A
Probab=60.52 E-value=17 Score=32.29 Aligned_cols=46 Identities=11% Similarity=0.183 Sum_probs=33.4
Q ss_pred eEEEeecCCcchHHHHHHHHHHHHH--CCCeEEEeCCC--cccchhHHHHHH
Q psy5979 50 VLVVGGDGRYFGDVAVDKIIKISAA--NGVAKLIVGQN--GILSTPAVSALI 97 (499)
Q Consensus 50 ~VvVg~D~R~~s~~~a~a~a~gL~s--~Gi~V~~~~~~--g~~pTP~~~fav 97 (499)
+|+||.|. .+-.+++.+.+-|.+ .|++|.|++.. ..+.-|-+...+
T Consensus 24 kIaIgsDh--aG~~lK~~i~~~L~~~~~G~eV~D~G~~s~~s~DYPd~a~~v 73 (179)
T 3k7p_A 24 RVAIGTDH--PAFAIHENLILYVKEAGDEFVPVYCGPKTAESVDYPDFASRV 73 (179)
T ss_dssp EEEEEECT--GGGGGHHHHHHHHHHTCTTEEEEECSCSSSSCCCHHHHHHHH
T ss_pred EEEEEECc--hHHHHHHHHHHHHHhcCCCCeEEEcCCCCCCCCCHHHHHHHH
Confidence 69999995 456889999999999 99999999311 123346655443
No 28
>2vvr_A Ribose-5-phosphate isomerase B; RPIB, carbohydrate metabolism, pentose phosphate pathway; 2.10A {Escherichia coli} PDB: 1nn4_A
Probab=60.27 E-value=19 Score=31.05 Aligned_cols=65 Identities=18% Similarity=0.212 Sum_probs=40.9
Q ss_pred cEEEEcCCCC--CChHHHHHHHHHhcCCCcceeeecccCCCCCCCCCCC--CcccHHHHHHHHHhCCCcEEEeeCCCCC
Q psy5979 213 FKLLINAMHG--VTGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDP--NLTYAADLVQAMQAGDFDLGAAFDGDGD 287 (499)
Q Consensus 213 lkVvvD~~~G--~~~~~~~~il~~~lG~~~~~~v~~~~d~~F~~~~p~P--~~~~l~~l~~~v~~~~adlgia~D~DgD 287 (499)
+||++-+-|+ .-...+.+.| ++.|.+++ +.-+. ..++ -+.....+.+.|.+..+|+||.+.|.|-
T Consensus 2 MkIaigsDhaG~~lK~~i~~~L-~~~G~eV~---D~G~~------~~~~~dYpd~a~~va~~V~~g~~d~GIliCGTGi 70 (149)
T 2vvr_A 2 KKIAFGCDHVGFILKHEIVAHL-VERGVEVI---DKGTW------SSERTDYPHYASQVALAVAGGEVDGGILICGTGV 70 (149)
T ss_dssp CEEEEEECTTGGGGHHHHHHHH-HHTTCEEE---ECCCC------SSSCCCHHHHHHHHHHHHHTTSSSEEEEEESSSH
T ss_pred cEEEEEeCchhHHHHHHHHHHH-HHCCCEEE---EeCCC------CCCCCChHHHHHHHHHHHHcCCCceEEEEeCCcH
Confidence 5788888776 3355677777 88998754 22111 1111 1244556777788888888877777653
No 29
>2z0f_A Putative phosphoglucomutase; isomerase, magnesium, metal-binding, structural genomics; 2.52A {Thermus thermophilus}
Probab=59.98 E-value=5.3 Score=42.04 Aligned_cols=67 Identities=13% Similarity=0.127 Sum_probs=42.4
Q ss_pred CchhhHHHHHHHhhcCCCC----CCeEEEeCCcccccc---hhhHHHHHhhCCCceEEEeec-CCcchHHHHHHHHH
Q psy5979 2 HYTENFIQSILTALGDKLK----GSVLVVGGDGRYFGD---VAVDKIIKISGIRSVLVVGGD-GRYFGDVAVDKIIK 70 (499)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~---~a~~~~~~~~~~~~~VvVg~D-~R~~s~~~a~a~a~ 70 (499)
.||++++..|++|+.+-++ +.+|+||+|+|+.|. .+.++.+.. .+-.|+.-.| .-...|+++-++..
T Consensus 39 ~lt~~~v~~i~~a~~~~l~~~~~~~~VvIG~D~R~~S~~~~~~~~~gl~a--~Gi~V~~~~~~G~~pTP~l~~av~~ 113 (524)
T 2z0f_A 39 TFTEAHVLAIAQAIAELRPSFGATGPLFLAKDTHALSEPAWATALSVFAA--HGIEVRVEADGDYTPTPLVSLAILE 113 (524)
T ss_dssp SSCHHHHHHHHHHHHHHTTTTTCCSCEEEEECSCTTHHHHHHHHHHHHHH--TTCCEEEESSSSCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCCcchHHHHHHHHHHHHH--CCCEEEEeCCCCccCcHHHHHHHHH
Confidence 5899999999999864322 357999999999773 333344432 3445555443 34445666665543
No 30
>3sgw_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, valley fever; 1.70A {Coccidioides immitis} PDB: 3sdw_A 3qd5_A*
Probab=59.91 E-value=21 Score=31.90 Aligned_cols=44 Identities=18% Similarity=0.125 Sum_probs=34.2
Q ss_pred ceEEEeecCCcchHHHHHHHHHHHHHCC--CeEEEeCCCccc------chhHHHHHH
Q psy5979 49 SVLVVGGDGRYFGDVAVDKIIKISAANG--VAKLIVGQNGIL------STPAVSALI 97 (499)
Q Consensus 49 ~~VvVg~D~R~~s~~~a~a~a~gL~s~G--i~V~~~~~~g~~------pTP~~~fav 97 (499)
=+|+||.|. .+-.+|+.+.+-|.+.| ++|.|+ |.- .-|-+...+
T Consensus 30 MkIaIgsDH--aG~~LK~~i~~~L~~~G~g~eV~D~---G~~s~~e~~DYPd~a~~v 81 (184)
T 3sgw_A 30 LRLAIACDD--AGVSYKEALKAHLSDNPLVSSITDV---GVTSTTDKTAYPHVAIQA 81 (184)
T ss_dssp EEEEEEECG--GGHHHHHHHHHHHTTCTTEEEEEEC---SCCSTTCCCCHHHHHHHH
T ss_pred cEEEEEECc--hhHHHHHHHHHHHHhCCCCcEEEEc---CCCCCCCCCCHHHHHHHH
Confidence 469999995 56789999999999999 799998 543 456655443
No 31
>3ph3_A Ribose-5-phosphate isomerase; alpha-beta-alpha sandwich fold; HET: RB5; 2.07A {Clostridium thermocellum} SCOP: c.121.1.1 PDB: 3ph4_A*
Probab=59.35 E-value=14 Score=32.65 Aligned_cols=67 Identities=19% Similarity=0.307 Sum_probs=41.2
Q ss_pred CCcEEEEcCCCCCC--hHHHHHHHHHhcCCCcceeeecccCCCCCCCCCCCC--cccHHHHHHHHHhCCCcEEEeeCCCC
Q psy5979 211 PPFKLLINAMHGVT--GPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDPN--LTYAADLVQAMQAGDFDLGAAFDGDG 286 (499)
Q Consensus 211 ~~lkVvvD~~~G~~--~~~~~~il~~~lG~~~~~~v~~~~d~~F~~~~p~P~--~~~l~~l~~~v~~~~adlgia~D~Dg 286 (499)
.++||++-|-|+.. ...+.+.| ++.|.+|+ +. ++...++. +.....+.+.|.+..+|+||.+.|.|
T Consensus 19 ~~MkIaIgsDhaG~~lK~~i~~~L-~~~G~eV~---D~------G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGTG 88 (169)
T 3ph3_A 19 SHMKIGIGSDHGGYNLKREIADFL-KKRGYEVI---DF------GTHGNESVDYPDFGLKVAEAVKSGECDRGIVICGTG 88 (169)
T ss_dssp --CEEEEEECGGGHHHHHHHHHHH-HHTTCEEE---EC------CCCSSSCCCHHHHHHHHHHHHHTTSSSEEEEEESSS
T ss_pred CCCEEEEEeCchHHHHHHHHHHHH-HHCCCEEE---Ec------CCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEcCCc
Confidence 46899999999642 23555667 78898754 22 11111221 34456677888888888888777766
Q ss_pred C
Q psy5979 287 D 287 (499)
Q Consensus 287 D 287 (499)
-
T Consensus 89 i 89 (169)
T 3ph3_A 89 L 89 (169)
T ss_dssp H
T ss_pred H
Confidence 4
No 32
>3ono_A Ribose/galactose isomerase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.75A {Vibrio parahaemolyticus}
Probab=58.95 E-value=13 Score=34.22 Aligned_cols=30 Identities=10% Similarity=0.130 Sum_probs=25.9
Q ss_pred eEEEeecCCcchHHHHH-----HHHHHHHHCCCeEEEe
Q psy5979 50 VLVVGGDGRYFGDVAVD-----KIIKISAANGVAKLIV 82 (499)
Q Consensus 50 ~VvVg~D~R~~s~~~a~-----a~a~gL~s~Gi~V~~~ 82 (499)
+|+||.|.. ..+++ .+..-|.+.|++|.|+
T Consensus 5 kIaigsDha---~~lK~~~i~~~l~~~L~~~G~eV~D~ 39 (214)
T 3ono_A 5 KIALMMENS---QAAKNAMVAGELNSVAGGLGHDVFNV 39 (214)
T ss_dssp EEEECCCGG---GGGGHHHHHHHHHHHHHHTTCEEEEC
T ss_pred EEEEECCCc---HHHHChhHHHHHHHHHHHCCCEEEEc
Confidence 799999987 44555 9999999999999998
No 33
>3he8_A Ribose-5-phosphate isomerase; CTRPI B, isomerization; 1.90A {Clostridium thermocellum} PDB: 3hee_A*
Probab=57.55 E-value=16 Score=31.61 Aligned_cols=65 Identities=20% Similarity=0.323 Sum_probs=39.3
Q ss_pred cEEEEcCCCCC--ChHHHHHHHHHhcCCCcceeeecccCCCCCCCCCCCC--cccHHHHHHHHHhCCCcEEEeeCCCCC
Q psy5979 213 FKLLINAMHGV--TGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDPN--LTYAADLVQAMQAGDFDLGAAFDGDGD 287 (499)
Q Consensus 213 lkVvvD~~~G~--~~~~~~~il~~~lG~~~~~~v~~~~d~~F~~~~p~P~--~~~l~~l~~~v~~~~adlgia~D~DgD 287 (499)
+||++-|-|+. -...+.+.| ++.|.+++ +. ++...++. +.....+.+.|.+..+|+||.+.|.|-
T Consensus 1 MkI~igsDhaG~~lK~~i~~~L-~~~G~eV~---D~------G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGTGi 69 (149)
T 3he8_A 1 MKIGIGSDHGGYNLKREIADFL-KKRGYEVI---DF------GTHGNESVDYPDFGLKVAEAVKSGECDRGIVICGTGL 69 (149)
T ss_dssp CEEEEEECGGGHHHHHHHHHHH-HHTTCEEE---EC------CCCSSSCCCHHHHHHHHHHHHHTTSSSEEEEEESSSH
T ss_pred CEEEEEECchhHHHHHHHHHHH-HHCCCEEE---Ec------CCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEcCCcH
Confidence 46888888863 123555667 78888754 22 11112221 344566778888888888887777653
No 34
>3uw2_A Phosphoglucomutase/phosphomannomutase family PROT; structural genomics, seattle structural genomics center for infectious disease; 1.95A {Burkholderia thailandensis}
Probab=56.48 E-value=4.5 Score=42.23 Aligned_cols=33 Identities=33% Similarity=0.534 Sum_probs=26.7
Q ss_pred CchhhHHHHHHHhhcCCC---CCCeEEEeCCccccc
Q psy5979 2 HYTENFIQSILTALGDKL---KGSVLVVGGDGRYFG 34 (499)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 34 (499)
.+|++++..|++|+.+-+ .+.+|+||+|+|+.+
T Consensus 40 ~lt~~~~~~ig~A~~~~l~~~~~~~VvVG~D~R~ss 75 (485)
T 3uw2_A 40 TLDADVARSIGRAFGSEVRAQGGDAVVVARDGRLSG 75 (485)
T ss_dssp TBCHHHHHHHHHHHHHHHHHTTCCEEEEEECSCTTH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCEEEEEECCCcCH
Confidence 589999999999986432 367899999999944
No 35
>4em8_A Ribose 5-phosphate isomerase B; ssgcid, seattle structural genomics center for infectious DI niaid; 1.95A {Anaplasma phagocytophilum}
Probab=54.36 E-value=18 Score=31.18 Aligned_cols=32 Identities=13% Similarity=-0.014 Sum_probs=28.7
Q ss_pred eEEEeecCCcchHHHHHHHHHHHHHCCCeEEEeC
Q psy5979 50 VLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVG 83 (499)
Q Consensus 50 ~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~ 83 (499)
+|+||.|. .+-.+|+.+.+-|.+.|++|.|++
T Consensus 9 kI~igsDh--aG~~lK~~i~~~L~~~G~eV~D~G 40 (148)
T 4em8_A 9 RVFLSSDH--AGVELRLFLSAYLRDLGCEVFDCG 40 (148)
T ss_dssp EEEEEECG--GGHHHHHHHHHHHHHTTCEEEECC
T ss_pred EEEEEECc--hhHHHHHHHHHHHHHCCCEEEEeC
Confidence 69999984 678999999999999999999993
No 36
>3na5_A Phosphoglucomutase; isomerase, metal binding; HET: BTB; 1.70A {Salmonella enterica subsp} PDB: 3olp_A 2fuv_A*
Probab=54.26 E-value=5.1 Score=42.72 Aligned_cols=69 Identities=16% Similarity=0.206 Sum_probs=44.6
Q ss_pred CchhhHHHHHHHhhcCCC----CCCeEEEeCCcccccchhhHHHHHh-hCCCceEEEeec-CCcchHHHHHHHHH
Q psy5979 2 HYTENFIQSILTALGDKL----KGSVLVVGGDGRYFGDVAVDKIIKI-SGIRSVLVVGGD-GRYFGDVAVDKIIK 70 (499)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~~~VvVg~D-~R~~s~~~a~a~a~ 70 (499)
.||++++..|++|+.+-+ .+.+|+||+|+|+.|.++.-..+.- ...+-.|++--| .-...|+++-++..
T Consensus 79 ~ln~~~v~~i~~A~a~~l~~~~~~~~VvVG~D~R~~S~~~~~~a~~~L~a~Gi~V~~~~d~g~~PTP~vsfav~~ 153 (570)
T 3na5_A 79 SFNEPHILAIAQAIAEERAKNGITGPCYVGKDTHALSEPAFISVLEVLAANGVDVIVQENNGFTPTPAVSNAILV 153 (570)
T ss_dssp SSSHHHHHHHHHHHHHHHHHTTCCSCEEEEECSSTTHHHHHHHHHHHHHHTTCCEEEEGGGCCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCCcccHHHHHHHHHHHHHCCCEEEEeCCCCccChHHHHHHHHH
Confidence 589999999998885322 2467999999999886443333221 114556776554 44556888777643
No 37
>2ppw_A Conserved domain protein; the putative RPIB, PSI-2, protein initiative, MCSG, structural genomics, midwest center for S genomics; HET: MSE; 2.01A {Streptococcus pneumoniae}
Probab=52.56 E-value=35 Score=31.29 Aligned_cols=69 Identities=12% Similarity=0.023 Sum_probs=42.1
Q ss_pred CcEEEEcCCCCCCh------HHHHHHHHHhcCCCcceeeecccCCCCCCCCCCC--CcccHHHHHHHHHhCCCcEEEeeC
Q psy5979 212 PFKLLINAMHGVTG------PYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDP--NLTYAADLVQAMQAGDFDLGAAFD 283 (499)
Q Consensus 212 ~lkVvvD~~~G~~~------~~~~~il~~~lG~~~~~~v~~~~d~~F~~~~p~P--~~~~l~~l~~~v~~~~adlgia~D 283 (499)
++||++-+-|.... ..+.+.| ++.|.+|+ +.-++.. ...++ -+.....+.+.|.+..+|+||...
T Consensus 3 ~MkIaIgsDha~~lKn~ilk~~i~~~L-~~~G~eV~---D~G~~s~---~d~~s~DYPd~a~~vA~~V~~g~~d~GIliC 75 (216)
T 2ppw_A 3 AMKIALINENSQASKNHIIYDSLKEAT-DKKGYQLF---NYGMRGE---EGESQLTYVQNGLMAAILLNTKAVDFVVTGC 75 (216)
T ss_dssp CCEEEECCCTTTGGGHHHHHHHHHHHH-HHHTCEEE---ECSCCSC---TTCCCCCHHHHHHHHHHHHHTTSCSEEEEEE
T ss_pred CcEEEEEcCChHhhhhhhHHHHHHHHH-HHCCCEEE---EeCCCCC---CCCCCCChHHHHHHHHHHHHcCCCCeEEEEc
Confidence 58999999988432 4677777 88998754 2211100 00011 123455677778887888887777
Q ss_pred CCCC
Q psy5979 284 GDGD 287 (499)
Q Consensus 284 ~DgD 287 (499)
|.|-
T Consensus 76 GTGi 79 (216)
T 2ppw_A 76 GTGV 79 (216)
T ss_dssp SSSH
T ss_pred CCcH
Confidence 7653
No 38
>1tuo_A Putative phosphomannomutase; thermus thermophilus HB8, biosynthesis of alginate, structural genomics; 1.70A {Thermus thermophilus}
Probab=51.61 E-value=5.9 Score=40.97 Aligned_cols=42 Identities=26% Similarity=0.462 Sum_probs=29.4
Q ss_pred CchhhHHHHHHHhhcCCCC---CCeEEEeCCccccc---chhhHHHHH
Q psy5979 2 HYTENFIQSILTALGDKLK---GSVLVVGGDGRYFG---DVAVDKIIK 43 (499)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~---~~a~~~~~~ 43 (499)
.+|++++..+++|+.+-++ +..|+||+|+|+.| +.|.++.+.
T Consensus 26 ~lt~~~v~~~~~a~~~~l~~~~~~~VvVG~D~R~ss~~~~~a~a~gl~ 73 (464)
T 1tuo_A 26 EFTFATLHRLAEAYGRHLLERGGGLVVVGHDTRFLADAFARALSGHLA 73 (464)
T ss_dssp TBCHHHHHHHHHHHHHHHHHTTCCEEEEEECSSTTHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHHhCCCeEEEeeCCCCCHHHHHHHHHHHHH
Confidence 4788898888888753322 57899999999966 234444444
No 39
>2f7l_A 455AA long hypothetical phospho-sugar mutase; phosphomannomutase, phosphoglucomutase, isomerase; 2.80A {Sulfolobus tokodaii}
Probab=51.23 E-value=9.5 Score=39.26 Aligned_cols=42 Identities=24% Similarity=0.261 Sum_probs=30.9
Q ss_pred CchhhHHHHHHHhhcCCCC-CCeEEEeCCccccc---chhhHHHHH
Q psy5979 2 HYTENFIQSILTALGDKLK-GSVLVVGGDGRYFG---DVAVDKIIK 43 (499)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~a~~~~~~ 43 (499)
.+|++++..+++|+.+-++ +..|+||+|+|+.| +.|.++.+.
T Consensus 17 ~lt~~~v~~~~~a~~~~l~~~~~VvIG~D~R~ss~~~~~a~a~gl~ 62 (455)
T 2f7l_A 17 ELTPELVLKLSKAIGTFFGKNSKILVGRDVRAGGDMLVKIVEGGLL 62 (455)
T ss_dssp TBCHHHHHHHHHHHHHHHCTTCEEEEEECSCTTHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHccCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 4789999988888875543 46899999999966 344444444
No 40
>4hjh_A Phosphomannomutase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: SEP G6Q; 2.10A {Brucella melitensis BV}
Probab=50.29 E-value=6.6 Score=40.83 Aligned_cols=83 Identities=18% Similarity=0.067 Sum_probs=50.2
Q ss_pred chhhHHHHHHHhhcCC-------CCCCeEEEeCCccccc---chhhHHHHHhhCCCceEEEeecCCcchHHHHHHHHHHH
Q psy5979 3 YTENFIQSILTALGDK-------LKGSVLVVGGDGRYFG---DVAVDKIIKISGIRSVLVVGGDGRYFGDVAVDKIIKIS 72 (499)
Q Consensus 3 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~---~~a~~~~~~~~~~~~~VvVg~D~R~~s~~~a~a~a~gL 72 (499)
+|+.++..+++|+.+- .++..|+||+|+|+.| +.|.++.+...|. .|+.. .-...|+++-++.. +
T Consensus 24 lt~~~v~~~~~a~a~~l~~~~~~~~~~~VvVG~D~R~ss~~~~~a~~~gl~a~Gi--~V~~~--g~~pTP~l~fav~~-~ 98 (481)
T 4hjh_A 24 LNGLPAYAYTMAFVQMLAAKGQLQKGDKVFVGRDLRPSSPDIAALAMGAIEDAGF--TPVNC--GVLPTPALSYYAMG-A 98 (481)
T ss_dssp HTTHHHHHHHHHHHHHHHHTTSCCTTCEEEEEECSSTTHHHHHHHHHHHHHHTTC--EEEEE--EECCHHHHHHHHHH-T
T ss_pred CCHHHHHHHHHHHHHHHHhhccccCCCeEEEeecCCcCHHHHHHHHHHHHHHCCC--EEEEe--CCcCcHHHHHHHHh-c
Confidence 6788888888887422 3578999999999966 3455555554433 33322 23445777766533 2
Q ss_pred HH--------------CCCeEEEeCCCcccchhH
Q psy5979 73 AA--------------NGVAKLIVGQNGILSTPA 92 (499)
Q Consensus 73 ~s--------------~Gi~V~~~~~~g~~pTP~ 92 (499)
.+ +|++++.- +|....|.
T Consensus 99 ~~~GImITASHNP~~~NGiK~~~~--~G~~~~~~ 130 (481)
T 4hjh_A 99 KAPSIMVTGSHIPDDRNGLKFYRR--DGEIDKDD 130 (481)
T ss_dssp TCCEEEECCTTSCTTEEEEEEEET--TEECCHHH
T ss_pred CCceEEEecCCCCCCCCCEEEeCC--CCCCCCHH
Confidence 21 57787764 46544444
No 41
>3s5p_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.30A {Giardia lamblia}
Probab=49.66 E-value=14 Score=32.49 Aligned_cols=68 Identities=16% Similarity=0.129 Sum_probs=41.5
Q ss_pred CcEEEEcCCCCC--ChHHHHHHHHHhcCCCcceeeecccCCCCCCCCCCCCcccHHHHHHHHHhCCCcEEEeeCCCCC
Q psy5979 212 PFKLLINAMHGV--TGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDPNLTYAADLVQAMQAGDFDLGAAFDGDGD 287 (499)
Q Consensus 212 ~lkVvvD~~~G~--~~~~~~~il~~~lG~~~~~~v~~~~d~~F~~~~p~P~~~~l~~l~~~v~~~~adlgia~D~DgD 287 (499)
++||++-|-|+. -...+.+.| ++.|.+|+. +-..... +..-+.....+.+.|.+..+|+||.+.|.|-
T Consensus 21 ~MkIaIgsDhaG~~lK~~i~~~L-~~~G~eV~D-~G~~~~~------~~dYPd~a~~va~~V~~g~~d~GIliCGTGi 90 (166)
T 3s5p_A 21 SMKVAFASDHGGRDLRMFLQQRA-SAHGYEVMD-LGTESDA------SVDYPDFAKIGCEAVTSGRADCCILVCGTGI 90 (166)
T ss_dssp TCEEEEEECGGGHHHHHHHHHHH-HHTTCEEEE-EEC--------------CHHHHHHHHHHHTTSCSEEEEEESSSH
T ss_pred ceEEEEEECchHHHHHHHHHHHH-HHCCCEEEE-cCCCCCC------CCCHHHHHHHHHHHHHcCCCcEEEEEcCCcH
Confidence 589999999963 223555667 888987642 3211100 0011344567778888888888888777764
No 42
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=49.19 E-value=42 Score=30.18 Aligned_cols=59 Identities=15% Similarity=0.148 Sum_probs=41.4
Q ss_pred CceEEEee---cCCcchHHHHHHHHHHHHHCCCeEEEeCCCcccchhHHHHHHHHcCCccceEEcCCC
Q psy5979 48 RSVLVVGG---DGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQVTGGIVLTASH 112 (499)
Q Consensus 48 ~~~VvVg~---D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~g~~pTP~~~fav~~~~~~gGI~ITaSH 112 (499)
.++|+++. |.+.-+ +..++..|..+|++|++++ -.+|...+.-+++..+.+ .|.++++.
T Consensus 88 ~~~vll~~~~gd~H~iG---~~~va~~l~~~G~~v~~LG--~~vp~~~l~~~~~~~~~d-~v~lS~~~ 149 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIG---KNLVAMMLESGGFTVYNLG--VDIEPGKFVEAVKKYQPD-IVGMSALL 149 (210)
T ss_dssp CCEEEEEEBTTCCCCHH---HHHHHHHHHHTTCEEEECC--SSBCHHHHHHHHHHHCCS-EEEEECCS
T ss_pred CCEEEEEeCCCcccHHH---HHHHHHHHHHCCCEEEECC--CCCCHHHHHHHHHHcCCC-EEEEeccc
Confidence 45788875 555555 4556667889999999993 357777787788877765 46666543
No 43
>3k7p_A Ribose 5-phosphate isomerase; pentose phosphate pathway, type B ribose 5-phosphate isomera (RPIB), R5P; 1.40A {Trypanosoma cruzi} SCOP: c.121.1.0 PDB: 3k7s_A* 3k7o_A* 3k8c_A* 3m1p_A
Probab=48.79 E-value=27 Score=31.05 Aligned_cols=66 Identities=14% Similarity=0.175 Sum_probs=41.1
Q ss_pred CcEEEEcCCCCC--ChHHHHHHHHHh--cCCCcceeeecccCCCCCCCCCCCC--cccHHHHHHHHHhCCCcEEEeeCCC
Q psy5979 212 PFKLLINAMHGV--TGPYVKKIFLEE--LGAQPDNAVNTTPLPDFGGHHPDPN--LTYAADLVQAMQAGDFDLGAAFDGD 285 (499)
Q Consensus 212 ~lkVvvD~~~G~--~~~~~~~il~~~--lG~~~~~~v~~~~d~~F~~~~p~P~--~~~l~~l~~~v~~~~adlgia~D~D 285 (499)
.+||++-+-|+. -...+.+.| ++ .|.+|+ +. +....++. +.....+.+.|.+..+|+||.+.|.
T Consensus 22 ~MkIaIgsDhaG~~lK~~i~~~L-~~~~~G~eV~---D~------G~~s~~s~DYPd~a~~vA~~V~~g~~d~GIliCGT 91 (179)
T 3k7p_A 22 TRRVAIGTDHPAFAIHENLILYV-KEAGDEFVPV---YC------GPKTAESVDYPDFASRVAEMVARKEVEFGVLAAGS 91 (179)
T ss_dssp CEEEEEEECTGGGGGHHHHHHHH-HHTCTTEEEE---EC------SCSSSSCCCHHHHHHHHHHHHHTTSSSEEEEEESS
T ss_pred ceEEEEEECchHHHHHHHHHHHH-HhcCCCCeEE---Ec------CCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEccC
Confidence 368999999963 234566667 77 887653 22 11112221 3445667788888888888777776
Q ss_pred CC
Q psy5979 286 GD 287 (499)
Q Consensus 286 gD 287 (499)
|-
T Consensus 92 Gi 93 (179)
T 3k7p_A 92 GI 93 (179)
T ss_dssp SH
T ss_pred cH
Confidence 53
No 44
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=46.84 E-value=42 Score=28.16 Aligned_cols=56 Identities=13% Similarity=0.201 Sum_probs=36.0
Q ss_pred ceEEEe---ecCCcchHHHHHHHHHHHHHCCCeEEEeCCCcccchhHHHHHHHHcCCccceEEcC
Q psy5979 49 SVLVVG---GDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQVTGGIVLTA 110 (499)
Q Consensus 49 ~~VvVg---~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~g~~pTP~~~fav~~~~~~gGI~ITa 110 (499)
++|+++ -|.+.-+.. .++..|..+|++|++++ ..+|...+.-++.+.+++ -|.+++
T Consensus 4 ~~vvla~~~~d~HdiG~~---~v~~~l~~~G~~Vi~lG--~~~p~e~~v~~a~~~~~d-~v~lS~ 62 (137)
T 1ccw_A 4 KTIVLGVIGSDCHAVGNK---ILDHAFTNAGFNVVNIG--VLSPQELFIKAAIETKAD-AILVSS 62 (137)
T ss_dssp CEEEEEEETTCCCCHHHH---HHHHHHHHTTCEEEEEE--EEECHHHHHHHHHHHTCS-EEEEEE
T ss_pred CEEEEEeCCCchhHHHHH---HHHHHHHHCCCEEEECC--CCCCHHHHHHHHHhcCCC-EEEEEe
Confidence 455554 465555544 45567889999999982 356666677777777664 344444
No 45
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=46.55 E-value=48 Score=31.10 Aligned_cols=62 Identities=19% Similarity=0.168 Sum_probs=42.0
Q ss_pred CCceEEEee---cCCcchHHHHHHHHHHHHHCCCeEEEeCCCcccchhHHHHHHHHcCCccceEEcCCCCC
Q psy5979 47 IRSVLVVGG---DGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQVTGGIVLTASHNP 114 (499)
Q Consensus 47 ~~~~VvVg~---D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~g~~pTP~~~fav~~~~~~gGI~ITaSHNP 114 (499)
.+++|+++. |.+.-+ ++.++..|..+|++|++++ -.+|...+.-++...+.+ .|.++++..+
T Consensus 122 ~~~~vlla~~~gd~HdiG---~~iva~~L~~~G~~Vi~LG--~~vp~e~l~~~~~~~~~d-~V~lS~l~~~ 186 (258)
T 2i2x_B 122 TKGTVVCHVAEGDVHDIG---KNIVTALLRANGYNVVDLG--RDVPAEEVLAAVQKEKPI-MLTGTALMTT 186 (258)
T ss_dssp CSCEEEEEECTTCCCCHH---HHHHHHHHHHTTCEEEEEE--EECCSHHHHHHHHHHCCS-EEEEECCCTT
T ss_pred CCCeEEEEeCCCCccHHH---HHHHHHHHHHCCCEEEECC--CCCCHHHHHHHHHHcCCC-EEEEEeeccC
Confidence 356777764 555555 4555567889999999993 256777777778877765 5666665433
No 46
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=43.84 E-value=70 Score=27.33 Aligned_cols=36 Identities=22% Similarity=0.202 Sum_probs=29.0
Q ss_pred CCceEEEeecCCc-chHHHHHHHHHHHHHCCCeEEEe
Q psy5979 47 IRSVLVVGGDGRY-FGDVAVDKIIKISAANGVAKLIV 82 (499)
Q Consensus 47 ~~~~VvVg~D~R~-~s~~~a~a~a~gL~s~Gi~V~~~ 82 (499)
..++|+|-|.+.. +.+.++++++++|.+.|++|-.+
T Consensus 3 ~~~kv~IvY~S~~GnT~~iA~~ia~~l~~~g~~v~~~ 39 (159)
T 3fni_A 3 AETSIGVFYVSEYGYSDRLAQAIINGITKTGVGVDVV 39 (159)
T ss_dssp CCCEEEEEECTTSTTHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCEEEEEEECCChHHHHHHHHHHHHHHHCCCeEEEE
Confidence 3457777777764 67999999999999999887655
No 47
>3pdk_A Phosphoglucosamine mutase; 4-domain architecture, mixed A/B fold, phosphohexomutase; 2.70A {Bacillus anthracis}
Probab=43.37 E-value=9.1 Score=39.67 Aligned_cols=33 Identities=21% Similarity=0.191 Sum_probs=26.1
Q ss_pred CchhhHHHHHHHhhcCC----CCCCeEEEeCCccccc
Q psy5979 2 HYTENFIQSILTALGDK----LKGSVLVVGGDGRYFG 34 (499)
Q Consensus 2 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 34 (499)
.+|++++..|++|+.+- ..+..|+||+|+|+-+
T Consensus 38 ~lt~~~v~~~g~a~~~~l~~~~~~~~VvIG~D~R~ss 74 (469)
T 3pdk_A 38 ELTPELAFKIGRFGGYVLTKDTDRPKVIIGRDTRISG 74 (469)
T ss_dssp TBCHHHHHHHHHHHHHHHHTTCSSCEEEEEECSCTTH
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCCCCH
Confidence 47899998888888532 2468899999999955
No 48
>3i3w_A Phosphoglucosamine mutase; csgid, IDP02164, isomerase, magne metal-binding, phosphoprotein, structural genomics; HET: SEP; 2.30A {Francisella tularensis subsp}
Probab=43.26 E-value=7.3 Score=40.04 Aligned_cols=33 Identities=30% Similarity=0.425 Sum_probs=25.4
Q ss_pred CchhhHHHHHHHhhcCCC---CCC-eEEEeCCccccc
Q psy5979 2 HYTENFIQSILTALGDKL---KGS-VLVVGGDGRYFG 34 (499)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~ 34 (499)
.+|++|+..|++|+.+-+ .+. .|+||+|+|+-+
T Consensus 18 ~lt~~~v~~~g~a~~~~l~~~~~~~~VvVG~D~R~ss 54 (443)
T 3i3w_A 18 TITVEFTQKLGNAVGSLINQKNYPKFVIVGQDTRSSG 54 (443)
T ss_dssp SBSHHHHHHHHHHHHHHHHHTTCCSEEEEEECSCTTH
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCeEEEEeCCCcCH
Confidence 489999999998885322 134 899999999844
No 49
>3qay_A Endolysin; amidase A/B fold, lyase; 2.00A {Clostridium phage PHICD27}
Probab=41.50 E-value=64 Score=28.46 Aligned_cols=67 Identities=18% Similarity=0.312 Sum_probs=39.3
Q ss_pred cEEEEcCCCCC---------Ch------------HHHHHHHHHhcCCCcceeeecccCCCCCCCCCCCCcccHHHHHHHH
Q psy5979 213 FKLLINAMHGV---------TG------------PYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDPNLTYAADLVQAM 271 (499)
Q Consensus 213 lkVvvD~~~G~---------~~------------~~~~~il~~~lG~~~~~~v~~~~d~~F~~~~p~P~~~~l~~l~~~v 271 (499)
++|++|+.||- .+ ..+.+.| ++.|++|. ++-.. +.+|.. ....+.+-.++.
T Consensus 2 m~IviDpGHGG~D~G~~~ga~g~~~Ekdi~l~ia~~l~~~L-~~~G~~V~-v~ltR-~d~~~~-----~~~~L~~R~~~A 73 (180)
T 3qay_A 2 MKICITVGHSILKSGACTSADGVVNEYQYNKSLAPVLADTF-RKEGHKVD-VIICP-EKQFKT-----KNEEKSYKIPRV 73 (180)
T ss_dssp CEEEEEECCCBCTTSCBCSCBSSSBHHHHHHHHHHHHHHHH-HHTTCEEE-EECCC-SSCCSS-----TTHHHHHHHHHH
T ss_pred eEEEEECCCCCCCCCCcCCCCCCccHHHHHHHHHHHHHHHH-HhcCCcce-EEECC-CCCccc-----cccCHHHHHHHH
Confidence 68999999991 12 1345666 77898741 12222 223321 112344445566
Q ss_pred HhCCCcEEEeeCCCCC
Q psy5979 272 QAGDFDLGAAFDGDGD 287 (499)
Q Consensus 272 ~~~~adlgia~D~DgD 287 (499)
.+.+||+.|.+=.|+-
T Consensus 74 n~~~aDlfISIH~Na~ 89 (180)
T 3qay_A 74 NSGGYDLLIELHLNAS 89 (180)
T ss_dssp HHSCCSEEEEEEEECS
T ss_pred HhcCCCEEEEeeeCCC
Confidence 7889999988766663
No 50
>1wqa_A Phospho-sugar mutase; alpha-beta protein, unphosphorylated form, enzyme-metal COMP isomerase; 2.00A {Pyrococcus horikoshii}
Probab=40.87 E-value=22 Score=36.52 Aligned_cols=33 Identities=36% Similarity=0.438 Sum_probs=24.5
Q ss_pred CchhhHHHHHHHhhcCC-----CCCCeEEEeCCccccc
Q psy5979 2 HYTENFIQSILTALGDK-----LKGSVLVVGGDGRYFG 34 (499)
Q Consensus 2 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 34 (499)
.+|++++..+++|+.+- .++..|+||+|+|+.|
T Consensus 17 ~lt~~~v~~~~~a~~~~l~~~~~~~~~VvIG~D~R~ss 54 (455)
T 1wqa_A 17 KITPEFAMKIGMAFGTLLKREGRKKPLVVVGRDTRVSG 54 (455)
T ss_dssp TBCHHHHHHHHHHHHHHHHHTTCSSCEEEEEECSCTTH
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCcCH
Confidence 47888888888777422 2345699999999966
No 51
>2vvp_A Ribose-5-phosphate isomerase B; RPIB, RV2465C, RARE sugar, carbohydrate metabolism, pentose phosphate pathway; HET: R52 5RP; 1.65A {Mycobacterium tuberculosis} SCOP: c.121.1.1 PDB: 2vvo_A* 2vvq_A* 2bes_A* 2bet_A* 1usl_A
Probab=39.05 E-value=33 Score=30.01 Aligned_cols=66 Identities=15% Similarity=0.229 Sum_probs=40.5
Q ss_pred CcEEEEcCCCCC--ChHHHHHHHHHhcCCCcceeeecccCCCCCCCCCCC---CcccHHHHHHHHHhCCCcEEEeeCCCC
Q psy5979 212 PFKLLINAMHGV--TGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDP---NLTYAADLVQAMQAGDFDLGAAFDGDG 286 (499)
Q Consensus 212 ~lkVvvD~~~G~--~~~~~~~il~~~lG~~~~~~v~~~~d~~F~~~~p~P---~~~~l~~l~~~v~~~~adlgia~D~Dg 286 (499)
.+||++-|-|+. -...+.+.| ++.|.+|+ +.-+ ...+| -+.....+.+.|.+..+|+||.+.|.|
T Consensus 3 ~MkIaigsDhaG~~lK~~i~~~L-~~~G~eV~---D~G~------~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGTG 72 (162)
T 2vvp_A 3 GMRVYLGADHAGYELKQRIIEHL-KQTGHEPI---DCGA------LRYDADDDYPAFCIAAATRTVADPGSLGIVLGGSG 72 (162)
T ss_dssp CCEEEEEECHHHHHHHHHHHHHH-HHTTCEEE---ECSC------CSCCTTCCHHHHHHHHHHHHHHSTTCEEEEEESSS
T ss_pred CCEEEEEeCchhHHHHHHHHHHH-HHCCCEEE---EeCC------CCCCCCCChHHHHHHHHHHHHcCCCceEEEEeCCc
Confidence 368888888862 234566667 88898754 2211 11221 124455677888888888887777765
Q ss_pred C
Q psy5979 287 D 287 (499)
Q Consensus 287 D 287 (499)
-
T Consensus 73 i 73 (162)
T 2vvp_A 73 N 73 (162)
T ss_dssp H
T ss_pred H
Confidence 3
No 52
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=38.23 E-value=87 Score=28.42 Aligned_cols=55 Identities=18% Similarity=0.147 Sum_probs=38.3
Q ss_pred CceEEEee---cCCcchHHHHHHHHHHHHHCCCeEEEeCCCcccchhHHHHHHHHcCCccceEE
Q psy5979 48 RSVLVVGG---DGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQVTGGIVL 108 (499)
Q Consensus 48 ~~~VvVg~---D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~g~~pTP~~~fav~~~~~~gGI~I 108 (499)
.++|+++. |.+.-+..+ ++..|..+|++|++++ --+|...+--++.+.+++ -|.+
T Consensus 92 ~~~vll~~v~gd~HdiG~~i---v~~~l~~~G~~Vi~LG--~~vp~e~iv~~~~~~~~d-~v~l 149 (215)
T 3ezx_A 92 AGLAITFVAEGDIHDIGHRL---VTTMLGANGFQIVDLG--VDVLNENVVEEAAKHKGE-KVLL 149 (215)
T ss_dssp CCEEEEEECTTCCCCHHHHH---HHHHHHHTSCEEEECC--SSCCHHHHHHHHHHTTTS-CEEE
T ss_pred CCeEEEEeCCCChhHHHHHH---HHHHHHHCCCeEEEcC--CCCCHHHHHHHHHHcCCC-EEEE
Confidence 46788875 777777655 4456889999999983 246666676677776654 3555
No 53
>3brc_A Conserved protein of unknown function; methanobacterium thermoautotrophicum, STR genomics, MCSG, PSI-2; 1.60A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=37.61 E-value=54 Score=27.94 Aligned_cols=82 Identities=10% Similarity=0.180 Sum_probs=50.8
Q ss_pred cEEEEcCCCCCChHHHHHHHHHhcCCCcceeeecccCCCCCCCCCCCCc-ccHHHHHHHHHhCCCcEEEee-----CCCC
Q psy5979 213 FKLLINAMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDPNL-TYAADLVQAMQAGDFDLGAAF-----DGDG 286 (499)
Q Consensus 213 lkVvvD~~~G~~~~~~~~il~~~lG~~~~~~v~~~~d~~F~~~~p~P~~-~~l~~l~~~v~~~~adlgia~-----D~Dg 286 (499)
-||||-..|+---.++..++ .+++-..+..++ +|+...+-+. +.+..-.-.+.-.+||+.||= =|.|
T Consensus 37 kkIvV~t~N~kKf~vi~~il-~~~~~~~i~~l~------i~Tn~aDlTRmPA~~K~LmAvD~~dADlvIARGRLGvPGSG 109 (156)
T 3brc_A 37 RRTVVPNWNAEKVDAINDVL-RSFNLREAEHLQ------FNTNWADLTRMPAVTKALMALDISGADLVIARGRLGVPGSG 109 (156)
T ss_dssp SCEEECCCCHHHHHHHHHHH-HHTTCCCCEECC------SCCGGGGGSSSHHHHHHHHHHHHHCCSEEEEEEECSSTTSC
T ss_pred CeEEEecCCchHhHHHHHHH-HHhcCCccceee------ccCcchhcccCcHHHHHHHheeccCCcEEEEcccccCCCCc
Confidence 47888888887677888988 777543221122 1221122111 122222224567799999984 5788
Q ss_pred CeeEEEccCceEeCC
Q psy5979 287 DRNMVLGKKAFFVNP 301 (499)
Q Consensus 287 DRl~vvd~~G~~l~~ 301 (499)
.=+.++|.+|++++.
T Consensus 110 SmLvimD~kGRiLta 124 (156)
T 3brc_A 110 SLLVIMDSRGRLLSA 124 (156)
T ss_dssp EEEEEEETTSCEEEE
T ss_pred cEEEEEcCCCcEEee
Confidence 888889999998754
No 54
>1o1x_A Ribose-5-phosphate isomerase RPIB; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.90A {Thermotoga maritima} SCOP: c.121.1.1
Probab=37.14 E-value=64 Score=27.94 Aligned_cols=69 Identities=20% Similarity=0.257 Sum_probs=41.7
Q ss_pred CCcEEEEcCCCCC--ChHHHHHHHHHhcCCCcceeeecccCCCCCCCCCCCCcccHHHHHHHHHhCCCcEEEeeCCCCC
Q psy5979 211 PPFKLLINAMHGV--TGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDPNLTYAADLVQAMQAGDFDLGAAFDGDGD 287 (499)
Q Consensus 211 ~~lkVvvD~~~G~--~~~~~~~il~~~lG~~~~~~v~~~~d~~F~~~~p~P~~~~l~~l~~~v~~~~adlgia~D~DgD 287 (499)
...||++-|-|+. -...+.+.| ++.|.+++ +.-++. . .+..-+.....+.+.|.+..+|+||.+.|.|-
T Consensus 11 ~~~~i~igsDhaG~~lK~~i~~~L-~~~G~eV~---D~G~~~---~-~~~dYpd~a~~va~~V~~g~~d~GIliCGTGi 81 (155)
T 1o1x_A 11 HHVKIAIASDHAAFELKEKVKNYL-LGKGIEVE---DHGTYS---E-ESVDYPDYAKKVVQSILSNEADFGILLCGTGL 81 (155)
T ss_dssp CCCEEEEEECSTTHHHHHHHHHHH-HHTTCEEE---ECCCCS---S-SCCCHHHHHHHHHHHHHTTSCSEEEEEESSSH
T ss_pred cceeEEEeeCchHHHHHHHHHHHH-HHCCCEEE---EeCCCC---C-CCCChHHHHHHHHHHHHcCCCceEEEEcCCcH
Confidence 4579999988863 223455566 78888754 221110 0 01111344567778888888888888777764
No 55
>3sgw_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, valley fever; 1.70A {Coccidioides immitis} PDB: 3sdw_A 3qd5_A*
Probab=37.00 E-value=41 Score=30.01 Aligned_cols=68 Identities=18% Similarity=0.180 Sum_probs=39.6
Q ss_pred CCcEEEEcCCCCC--ChHHHHHHHHHhcC--CCcceeeecccCCCCCCCCCCC--CcccHHHHHHHHHhCCCcEEEeeCC
Q psy5979 211 PPFKLLINAMHGV--TGPYVKKIFLEELG--AQPDNAVNTTPLPDFGGHHPDP--NLTYAADLVQAMQAGDFDLGAAFDG 284 (499)
Q Consensus 211 ~~lkVvvD~~~G~--~~~~~~~il~~~lG--~~~~~~v~~~~d~~F~~~~p~P--~~~~l~~l~~~v~~~~adlgia~D~ 284 (499)
.++||++-|-|+. -...+.+.| ++.| .+| ++.-++. ..++ -+.....+.+.|.+..+|+||.+.|
T Consensus 28 ~~MkIaIgsDHaG~~LK~~i~~~L-~~~G~g~eV---~D~G~~s-----~~e~~DYPd~a~~vA~~V~~ge~d~GIliCG 98 (184)
T 3sgw_A 28 PPLRLAIACDDAGVSYKEALKAHL-SDNPLVSSI---TDVGVTS-----TTDKTAYPHVAIQAAQLIKDGKVDRALMICG 98 (184)
T ss_dssp CCEEEEEEECGGGHHHHHHHHHHH-TTCTTEEEE---EECSCCS-----TTCCCCHHHHHHHHHHHHHTTSCSEEEEEES
T ss_pred CCcEEEEEECchhHHHHHHHHHHH-HhCCCCcEE---EEcCCCC-----CCCCCCHHHHHHHHHHHHHcCCCcEEEEEcC
Confidence 4689999999963 122444555 6666 443 3321110 1111 1344566778888888888887777
Q ss_pred CCC
Q psy5979 285 DGD 287 (499)
Q Consensus 285 DgD 287 (499)
.|-
T Consensus 99 TGi 101 (184)
T 3sgw_A 99 TGL 101 (184)
T ss_dssp SSH
T ss_pred CcH
Confidence 653
No 56
>3ono_A Ribose/galactose isomerase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.75A {Vibrio parahaemolyticus}
Probab=36.69 E-value=76 Score=28.99 Aligned_cols=68 Identities=10% Similarity=0.060 Sum_probs=41.2
Q ss_pred CcEEEEcCCCCCC-hH-----HHHHHHHHhcCCCcceeeecccCCCCCCCCCCC--CcccHHHHHHHHHhCCCcEEEeeC
Q psy5979 212 PFKLLINAMHGVT-GP-----YVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDP--NLTYAADLVQAMQAGDFDLGAAFD 283 (499)
Q Consensus 212 ~lkVvvD~~~G~~-~~-----~~~~il~~~lG~~~~~~v~~~~d~~F~~~~p~P--~~~~l~~l~~~v~~~~adlgia~D 283 (499)
.+||++-+-|+.. .. .+.+.| ++.|.+|+ +..+. +...++ -+.....+.+.|.+..+|+||.+.
T Consensus 3 ~MkIaigsDha~~lK~~~i~~~l~~~L-~~~G~eV~---D~G~~----~~~~~~~dYpd~a~~vA~~V~~g~~d~GIliC 74 (214)
T 3ono_A 3 AMKIALMMENSQAAKNAMVAGELNSVA-GGLGHDVF---NVGMT----DENDHHLTYIHLGIMASILLNSKAVDFVVTGC 74 (214)
T ss_dssp CCEEEECCCGGGGGGHHHHHHHHHHHH-HHTTCEEE---ECSCS----STTSSCCCHHHHHHHHHHHHHTTSCSEEEEEE
T ss_pred ccEEEEECCCcHHHHChhHHHHHHHHH-HHCCCEEE---EcCCC----CCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 5899999999843 23 455667 88898754 32210 001111 124455677788888888888777
Q ss_pred CCCC
Q psy5979 284 GDGD 287 (499)
Q Consensus 284 ~DgD 287 (499)
|.|-
T Consensus 75 GTGi 78 (214)
T 3ono_A 75 GTGQ 78 (214)
T ss_dssp SSSH
T ss_pred CCcH
Confidence 7653
No 57
>3c5y_A Ribose/galactose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.81A {Novosphingobium aromaticivorans}
Probab=33.01 E-value=74 Score=29.40 Aligned_cols=61 Identities=7% Similarity=-0.019 Sum_probs=38.3
Q ss_pred CCceEEEeecCCcch--HHHHHHHHHHHHHCCCeEEEeCCCccc--------chhHHHHH----HHHcCCccceEEcC
Q psy5979 47 IRSVLVVGGDGRYFG--DVAVDKIIKISAANGVAKLIVGQNGIL--------STPAVSAL----IRKHQVTGGIVLTA 110 (499)
Q Consensus 47 ~~~~VvVg~D~R~~s--~~~a~a~a~gL~s~Gi~V~~~~~~g~~--------pTP~~~fa----v~~~~~~gGI~ITa 110 (499)
++-+|.|--.....+ ..+++.+..-|.+.|++|.|+ |.- .-|-+... +..-.++-||.|.+
T Consensus 18 ~~mkiali~~~sqa~kN~~lKe~i~~~L~~~G~eV~D~---G~~s~~d~~svDYPd~a~~vA~~V~~g~~d~GIliCG 92 (231)
T 3c5y_A 18 QGMKIALIIENSQAAKNAVVHEALTTVAEPLGHKVFNY---GMYTAEDKASLTYVMNGLLAGILLNSGAADFVVTGCG 92 (231)
T ss_dssp -CCEEEECCCGGGGGGHHHHHHHHHHHHGGGTCEEEEC---CCCSTTCSSCCCHHHHHHHHHHHHHHTSCSEEEEEES
T ss_pred hcceEEEEecCCHhhhHHHHHHHHHHHHHHCCCEEEEe---CCCCCCCCCCCChHHHHHHHHHHHHcCCCCeEEEEcC
Confidence 344555544444444 599999999999999999999 532 24554443 33344555665543
No 58
>1t6t_1 Putative protein; structural genomics, PSI, protein structur initiative, midwest center for structural genomics, MCSG, U function; 1.80A {Aquifex aeolicus} SCOP: c.136.1.1
Probab=28.64 E-value=78 Score=26.06 Aligned_cols=45 Identities=9% Similarity=0.067 Sum_probs=35.6
Q ss_pred chhhHHHHHhhCCCce-EEEeecCCcchHHHHHHHHHHHHHCCCeE
Q psy5979 35 DVAVDKIIKISGIRSV-LVVGGDGRYFGDVAVDKIIKISAANGVAK 79 (499)
Q Consensus 35 ~~a~~~~~~~~~~~~~-VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V 79 (499)
|+|+...+........ |+|..|...+++.+++-+...|...|+.|
T Consensus 48 Gtal~~~i~~l~~~~~~VIIltD~D~aGe~ir~~i~~~l~~~~~~v 93 (118)
T 1t6t_1 48 GKRYADVVDMLEGKWEKVILLFDLDTHGERINQKMKELLSSQGFLV 93 (118)
T ss_dssp TSCHHHHHHHHTTTCSEEEECCCSSHHHHHHHHHHHHHHHHTTCEE
T ss_pred CCcHHHHHHHHHhCCCEEEEEECCChhHHHHHHHHHHhcCccCcee
Confidence 4455555555544455 99999999999999999999999988765
No 59
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=26.24 E-value=1.6e+02 Score=24.99 Aligned_cols=32 Identities=22% Similarity=0.184 Sum_probs=24.6
Q ss_pred EEEeecCC-cchHHHHHHHHHHHHHCCCeEEEe
Q psy5979 51 LVVGGDGR-YFGDVAVDKIIKISAANGVAKLIV 82 (499)
Q Consensus 51 VvVg~D~R-~~s~~~a~a~a~gL~s~Gi~V~~~ 82 (499)
|+|-|.+. .+.+.+|++++++|.+.|++|-.+
T Consensus 3 v~IvY~S~tGnT~~~A~~ia~~l~~~g~~v~~~ 35 (161)
T 3hly_A 3 VLIGYLSDYGYSDRLSQAIGRGLVKTGVAVEMV 35 (161)
T ss_dssp EEEEECTTSTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEECCChHHHHHHHHHHHHHHhCCCeEEEE
Confidence 45555554 467999999999999999877554
No 60
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=26.09 E-value=4.1e+02 Score=24.81 Aligned_cols=112 Identities=13% Similarity=0.087 Sum_probs=56.4
Q ss_pred hhHHHHHHHhhcCCCCCCeEEEeCCcccccchhhHHHHHhhCCCceEEEeecCCcchHHHHHHHHHHHHHCCCeEEEeC-
Q psy5979 5 ENFIQSILTALGDKLKGSVLVVGGDGRYFGDVAVDKIIKISGIRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVG- 83 (499)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~- 83 (499)
+.+.++|++-++ ++.+-+++...+-.-+..+.-.++ +.+..|++-.-+...- ...+...|+++..++
T Consensus 54 ~~l~~~la~~~~--~~~~~i~~~~g~~~a~~~~~~~l~---~~gd~vl~~~~~~~~~-------~~~~~~~g~~~~~~~~ 121 (354)
T 3ly1_A 54 LMLGNKLAAHHQ--VEAPSILLTAGSSEGIRAAIEAYA---SLEAQLVIPELTYGDG-------EHFAKIAGMKVTKVKM 121 (354)
T ss_dssp HHHHHHHHHHTT--SCGGGEEEESHHHHHHHHHHHHHC---CTTCEEEEESSSCTHH-------HHHHHHTTCEEEEECC
T ss_pred HHHHHHHHHHhC--CChHHEEEeCChHHHHHHHHHHHh---CCCCeEEECCCCchHH-------HHHHHHcCCEEEEecC
Confidence 345555655553 333444443333322222222222 3566788776555432 234457899988774
Q ss_pred C-CcccchhHHHHHHHHcCCccceEEcCCCCCCCCCCCceeEEEcCCCCCCChhHHHHHH
Q psy5979 84 Q-NGILSTPAVSALIRKHQVTGGIVLTASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIY 142 (499)
Q Consensus 84 ~-~g~~pTP~~~fav~~~~~~gGI~ITaSHNP~~~~~~nGiK~~~~~G~~~~~~~~~~Ie 142 (499)
+ .+.+..-.+.-++.+..-...|+|+..||| .|..++.+..++|-
T Consensus 122 ~~~~~~d~~~l~~~l~~~~~~~~v~l~~p~np--------------tG~~~~~~~l~~l~ 167 (354)
T 3ly1_A 122 LDNWAFDIEGLKAAVAAYSGPSIVYLVNPNNP--------------TGTITPADVIEPWI 167 (354)
T ss_dssp CTTSCCCHHHHHHHHHTCSSCEEEEEESSCTT--------------TCCCCCHHHHHHHH
T ss_pred CCCCCCCHHHHHHHhccCCCCCEEEEeCCCCC--------------cCCCcCHHHHHHHH
Confidence 1 112222334445543122356788878888 57777765444433
No 61
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=25.83 E-value=1.2e+02 Score=32.06 Aligned_cols=59 Identities=12% Similarity=0.120 Sum_probs=41.9
Q ss_pred CceEEEee---cCCcchHHHHHHHHHHHHHCCCeEEEeCCCcccchhHHHHHHHHcCCccceEEcCCC
Q psy5979 48 RSVLVVGG---DGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQVTGGIVLTASH 112 (499)
Q Consensus 48 ~~~VvVg~---D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~g~~pTP~~~fav~~~~~~gGI~ITaSH 112 (499)
+++|+++. |.+.-+. +.++..|..+|++|++++ -.+|...+--++...+++ .|.++++.
T Consensus 98 ~~kVLlatv~GD~HdiG~---~iva~~L~~~G~eVi~LG--~~vP~e~iv~aa~~~~~d-iVgLS~l~ 159 (579)
T 3bul_A 98 NGKMVIATVKGDVHDIGK---NIVGVVLQCNNYEIVDLG--VMVPAEKILRTAKEVNAD-LIGLSGLI 159 (579)
T ss_dssp SCEEEEEEBTTCCCCHHH---HHHHHHHHTTTCEEEECC--SSBCHHHHHHHHHHHTCS-EEEEECCS
T ss_pred CCeEEEEECCCCCchHHH---HHHHHHHHHCCCEEEECC--CCCCHHHHHHHHHHcCCC-EEEEEecC
Confidence 46788875 6666664 455567889999999983 347777777788887775 56666643
No 62
>3pmg_A Alpha-D-glucose-1,6-bisphosphate; phosphoglucomutase, phosphotransferase; HET: SEP; 2.40A {Oryctolagus cuniculus} SCOP: c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1 PDB: 1c4g_A* 1jdy_A* 1lxt_A 1vkl_A* 1c47_A*
Probab=25.61 E-value=28 Score=36.88 Aligned_cols=61 Identities=33% Similarity=0.493 Sum_probs=38.1
Q ss_pred hHHHHHHHhhcCCCCCCeEEEeCCcccccchh---hHHHHHhhCCCceEEEeecCCcchHHHHHHHHH
Q psy5979 6 NFIQSILTALGDKLKGSVLVVGGDGRYFGDVA---VDKIIKISGIRSVLVVGGDGRYFGDVAVDKIIK 70 (499)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a---~~~~~~~~~~~~~VvVg~D~R~~s~~~a~a~a~ 70 (499)
..-||+.+.+..+ .+|+||+|+||.|..+ .+..+..+|. ..++++.+.-...|+++-++-.
T Consensus 41 ~l~~A~g~~~~~g---~~VvVG~D~R~~s~~~~~~~a~~l~a~Gv-~V~~~~~~g~~pTP~vs~av~~ 104 (561)
T 3pmg_A 41 SIISTVEPAQRQE---ATLVVGGDGRFYMKEAIQLIVRIAAANGI-GRLVIGQNGILSTPAVSCIIRK 104 (561)
T ss_dssp HHHHTSCGGGTTT---CEEEEEECCCTTHHHHHHHHHHHHHHTTC-CEEEEEEEEECCHHHHHHHHHH
T ss_pred HHHHHHHhhhcCC---CEEEEEeCCCccHHHHHHHHHHHHHHCCC-EEEEecCCCccCHHHHHHHHHH
Confidence 3456676555444 3799999999977433 3445542222 3445566666777888887644
No 63
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=25.41 E-value=68 Score=30.31 Aligned_cols=71 Identities=11% Similarity=0.045 Sum_probs=44.6
Q ss_pred hhHHHHHhhCCCceEEEee---cCCcchHHHHHHH-----HHHHHHC-CCeEEEeCCCcccchhHHHHHHHHcCCccceE
Q psy5979 37 AVDKIIKISGIRSVLVVGG---DGRYFGDVAVDKI-----IKISAAN-GVAKLIVGQNGILSTPAVSALIRKHQVTGGIV 107 (499)
Q Consensus 37 a~~~~~~~~~~~~~VvVg~---D~R~~s~~~a~a~-----a~gL~s~-Gi~V~~~~~~g~~pTP~~~fav~~~~~~gGI~ 107 (499)
++..+-+..+...+|+++. |.+.-+..+...+ -.+|..+ |++|++++ -.+|...+--++...+++ .|-
T Consensus 109 ~~~~l~~~~~~~~~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG--~~vp~e~iv~aa~e~~~d-~Vg 185 (262)
T 1xrs_B 109 TDEYIKENIGRKIVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLG--SQVANEDFIKKAVELEAD-VLL 185 (262)
T ss_dssp HHHHHHHHTCSCEEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECC--SSBCHHHHHHHHHHTTCS-EEE
T ss_pred HHHHHHhhcCCCCEEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECC--CCCCHHHHHHHHHHcCCC-EEE
Confidence 3444444445567888876 8888775443322 1227899 99999983 246777777777776664 344
Q ss_pred EcC
Q psy5979 108 LTA 110 (499)
Q Consensus 108 ITa 110 (499)
+++
T Consensus 186 lS~ 188 (262)
T 1xrs_B 186 VSQ 188 (262)
T ss_dssp EEC
T ss_pred EEe
Confidence 443
No 64
>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}
Probab=25.37 E-value=1.6e+02 Score=30.65 Aligned_cols=64 Identities=17% Similarity=0.098 Sum_probs=49.6
Q ss_pred hhc-CCCCCCeEEEeCCcccccchhhHHHHHhhCCCceEEEeecCC--cchHHHHHHHHHHHHHCCCeEEE
Q psy5979 14 ALG-DKLKGSVLVVGGDGRYFGDVAVDKIIKISGIRSVLVVGGDGR--YFGDVAVDKIIKISAANGVAKLI 81 (499)
Q Consensus 14 ~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~VvVg~D~R--~~s~~~a~a~a~gL~s~Gi~V~~ 81 (499)
+|. +.+|+..+|||+.. +|..||.++...|..-+|+ -+|.. ..-+.+++.+...|...|++++.
T Consensus 216 ~l~l~~lP~~lvIIGgG~---IGlE~A~~~~~lG~~VTii-~~~~~L~~~D~ei~~~l~~~l~~~gi~~~~ 282 (542)
T 4b1b_A 216 IFSLKKDPGKTLVVGASY---VALECSGFLNSLGYDVTVA-VRSIVLRGFDQQCAVKVKLYMEEQGVMFKN 282 (542)
T ss_dssp HTTCSSCCCSEEEECCSH---HHHHHHHHHHHHTCCEEEE-ESSCSSTTSCHHHHHHHHHHHHHTTCEEEE
T ss_pred hhccccCCceEEEECCCH---HHHHHHHHHHhcCCeEEEe-cccccccccchhHHHHHHHHHHhhcceeec
Confidence 454 78999999998763 8899999999888775554 45543 23477888999999999998874
No 65
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=24.82 E-value=2.7e+02 Score=26.51 Aligned_cols=118 Identities=11% Similarity=0.087 Sum_probs=60.0
Q ss_pred hhHHHHHHHhhc----CCCCCCeEEEeCCcccccchhhHHHHHhhCCCceEEEeecCCcchHHHHHHHHHHHHHCCCeEE
Q psy5979 5 ENFIQSILTALG----DKLKGSVLVVGGDGRYFGDVAVDKIIKISGIRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKL 80 (499)
Q Consensus 5 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~ 80 (499)
+.+.+++++.+. -.+..+.|++...+---...+.-.++ ..+..|++..-+..+ ....+...|.++.
T Consensus 65 ~~l~~~la~~l~~~~g~~~~~~~i~~~~g~~~a~~~~~~~l~---~~gd~vl~~~~~~~~-------~~~~~~~~g~~~~ 134 (391)
T 3dzz_A 65 AEYYKAVADWEEIEHRARPKEDWCVFASGVVPAISAMVRQFT---SPGDQILVQEPVYNM-------FYSVIEGNGRRVI 134 (391)
T ss_dssp HHHHHHHHHHHHHHHSCCCCGGGEEEESCHHHHHHHHHHHHS---CTTCEEEECSSCCHH-------HHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHEEECCCHHHHHHHHHHHhC---CCCCeEEECCCCcHH-------HHHHHHHcCCEEE
Confidence 345555554442 22444445554443322222222222 245677776555443 2334567899887
Q ss_pred EeCC---Cc-c-cchhHHHHHHHHcCCccceEEcCCCCCCCCCCCceeEEEcCCCCCCChhHHHHHHHHHHh
Q psy5979 81 IVGQ---NG-I-LSTPAVSALIRKHQVTGGIVLTASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITTQ 147 (499)
Q Consensus 81 ~~~~---~g-~-~pTP~~~fav~~~~~~gGI~ITaSHNP~~~~~~nGiK~~~~~G~~~~~~~~~~Ie~~~~~ 147 (499)
.++- .+ . ...-.+.-++.+.+ ...|+|+..||| .|..++++..++|.++..+
T Consensus 135 ~~~~~~~~~~~~~d~~~l~~~l~~~~-~~~v~i~~p~np--------------tG~~~~~~~l~~i~~~~~~ 191 (391)
T 3dzz_A 135 SSDLIYENSKYSVNWADLEEKLATPS-VRMMVFCNPHNP--------------IGYAWSEEEVKRIAELCAK 191 (391)
T ss_dssp ECCCEEETTEEECCHHHHHHHHTSTT-EEEEEEESSBTT--------------TTBCCCHHHHHHHHHHHHH
T ss_pred EeeeeecCCceeecHHHHHHHHhccC-ceEEEEECCCCC--------------CCcccCHHHHHHHHHHHHH
Confidence 7620 01 0 22233444443222 345777777888 5777777777777766543
No 66
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=23.23 E-value=4.2e+02 Score=24.91 Aligned_cols=113 Identities=16% Similarity=0.140 Sum_probs=61.2
Q ss_pred hhHHHHHHHhhcCCCCCCeEEEeCCcccccchhhHHHHHhh-CCCceEEEeecCCcchHHHHHHHHHHHHHCCCeEEEeC
Q psy5979 5 ENFIQSILTALGDKLKGSVLVVGGDGRYFGDVAVDKIIKIS-GIRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVG 83 (499)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~ 83 (499)
+.+-++|++-++-. +.+-|++...+-- |...++... ..+..|++..-+...... .+...|.++..++
T Consensus 70 ~~l~~~la~~~g~~-~~~~i~~~~g~t~----a~~~~~~~~~~~gd~Vl~~~~~~~~~~~-------~~~~~g~~~~~v~ 137 (367)
T 3euc_A 70 EALRAKLKEVMQVP-AGMEVLLGNGSDE----IISMLALAAARPGAKVMAPVPGFVMYAM-------SAQFAGLEFVGVP 137 (367)
T ss_dssp HHHHHHHHHHHTCC-TTCEEEEEEHHHH----HHHHHHHHTCCTTCEEEEEESCSCCSCH-------HHHTTTCEEEEEE
T ss_pred HHHHHHHHHHhCCC-CcceEEEcCCHHH----HHHHHHHHHcCCCCEEEEcCCCHHHHHH-------HHHHcCCeEEEec
Confidence 56777777766531 3344444333322 222222222 256778887766655322 3456799887763
Q ss_pred -C-CcccchhHHHHHHHHcCCccceEEcCCCCCCCCCCCceeEEEcCCCCCCChhHHHHHHHH
Q psy5979 84 -Q-NGILSTPAVSALIRKHQVTGGIVLTASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKI 144 (499)
Q Consensus 84 -~-~g~~pTP~~~fav~~~~~~gGI~ITaSHNP~~~~~~nGiK~~~~~G~~~~~~~~~~Ie~~ 144 (499)
+ .+.+..-.+.-++...+. ..|+|+..||| .|..++.+..++|.++
T Consensus 138 ~~~~~~~d~~~l~~~l~~~~~-~~v~~~~~~np--------------tG~~~~~~~l~~i~~~ 185 (367)
T 3euc_A 138 LRADFTLDRGAMLAAMAEHQP-AIVYLAYPNNP--------------TGNLFDAADMEAIVRA 185 (367)
T ss_dssp CCTTSCCCHHHHHHHHHHHCC-SEEEEESSCTT--------------TCCCCCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHhhccCC-CEEEEcCCCCC--------------CCCCCCHHHHHHHHHh
Confidence 1 112233345555554333 46888877888 5777776555555544
No 67
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=22.83 E-value=3.5e+02 Score=27.31 Aligned_cols=69 Identities=16% Similarity=0.141 Sum_probs=37.4
Q ss_pred hhhHHHHHHHhhcCCCCCCeEEEeCCcccccchhhHHHHHhhCCCceEEEeecCCcchHHHHHHHHHHHHHCCCeEEEe
Q psy5979 4 TENFIQSILTALGDKLKGSVLVVGGDGRYFGDVAVDKIIKISGIRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIV 82 (499)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~ 82 (499)
|+.|++.|++.++..++. .+..--+|.+ .+...... .=.+++|+|.-| +..+.++++-|...|++|..+
T Consensus 273 T~~~l~~la~~~g~~~~~--~i~~e~~~~~--~~~~d~~~-~l~gkrv~i~~~-----~~~~~~l~~~L~elG~~vv~v 341 (458)
T 1mio_B 273 TDEFIMALSEATGKEVPA--SIEEERGQLI--DLMIDAQQ-YLQGKKVALLGD-----PDEIIALSKFIIELGAIPKYV 341 (458)
T ss_dssp HHHHHHHHHHHHCCCCCH--HHHHHHHHHH--HHHHHTHH-HHTTCEEEEEEC-----HHHHHHHHHHHHTTTCEEEEE
T ss_pred HHHHHHHHHHHHCCCchH--HHHHHHHHHH--HHHHHHHH-HcCCCEEEEEcC-----chHHHHHHHHHHHCCCEEEEE
Confidence 899999999999865431 0000001111 01111111 114667777766 355566666777788877765
No 68
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=22.54 E-value=5e+02 Score=24.65 Aligned_cols=78 Identities=9% Similarity=0.040 Sum_probs=46.3
Q ss_pred CCceEEEeecCCcchHHHHHHHHHHHHHCCCeEEEeC--------CCcccchhHHHHHHHHcCCccceEEcCCCCCCCCC
Q psy5979 47 IRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVG--------QNGILSTPAVSALIRKHQVTGGIVLTASHNPGGPD 118 (499)
Q Consensus 47 ~~~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~--------~~g~~pTP~~~fav~~~~~~gGI~ITaSHNP~~~~ 118 (499)
.+..|++-.-+..+ ...++...|.++..+. +.+.+....+.-++.. + ...|+++..|||
T Consensus 125 ~gd~vl~~~~~~~~-------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~-~~~v~~~~p~np---- 191 (407)
T 3nra_A 125 RGDKVAIVQPDYFA-------NRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKA-G-ARVFLFSNPNNP---- 191 (407)
T ss_dssp TTCEEEEEESCCTH-------HHHHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHT-T-CCEEEEESSCTT----
T ss_pred CCCEEEEcCCcccc-------hHHHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHhh-C-CcEEEEcCCCCC----
Confidence 46677776655543 3345567899887652 1111222334444443 3 346777777898
Q ss_pred CCceeEEEcCCCCCCChhHHHHHHHHHHh
Q psy5979 119 NDFGIKFNTSNGGPAPDAVTENIYKITTQ 147 (499)
Q Consensus 119 ~~nGiK~~~~~G~~~~~~~~~~Ie~~~~~ 147 (499)
.|...+.+..++|.++..+
T Consensus 192 ----------tG~~~~~~~l~~i~~~~~~ 210 (407)
T 3nra_A 192 ----------AGVVYSAEEIGQIAALAAR 210 (407)
T ss_dssp ----------TCCCCCHHHHHHHHHHHHH
T ss_pred ----------CCcccCHHHHHHHHHHHHH
Confidence 5777777777777776543
No 69
>3o94_A Nicotinamidase; hydrolase; 1.60A {Streptococcus pneumoniae} PDB: 3o90_A 3o91_A* 3o92_A* 3o93_A* 3s2s_A
Probab=22.24 E-value=1.4e+02 Score=27.05 Aligned_cols=75 Identities=13% Similarity=-0.024 Sum_probs=50.6
Q ss_pred chhhHHHHHhhCCCceEEEeecCCcchHHHHHHHHHHHHHCCCeEEEeCCCcccchhHH-HHHHHHcCCccceEEcCCCC
Q psy5979 35 DVAVDKIIKISGIRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAV-SALIRKHQVTGGIVLTASHN 113 (499)
Q Consensus 35 ~~a~~~~~~~~~~~~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~g~~pTP~~-~fav~~~~~~gGI~ITaSHN 113 (499)
++.+..+|++++.+.-|++|-.+..-=..-+ ..+...|++|+.+.|.-...+|.. ..++..+....|+.|+.||-
T Consensus 131 ~t~L~~~L~~~gi~~lvi~G~~T~~CV~~Ta----~~a~~~Gy~v~vv~Da~~~~~~~~h~~aL~~m~~~~G~~i~ts~~ 206 (211)
T 3o94_A 131 GTDLDIRLRERRVSTVILTGVLTDISVLHTA----IDAYNLGYDIEIVKPAVASIWPENHQFALGHFKNTLGAKLVDENL 206 (211)
T ss_dssp TSSHHHHHHHTTCCEEEEEEECTTTHHHHHH----HHHHHTTCEEEEEEEEEECSCHHHHHHHHHHHHHTSCCEEECTTS
T ss_pred CchHHHHHHhCCCCeEEEEeeccChHHHHHH----HHHHHCCCEEEEechhhcCCCHHHHHHHHHHHHHHCCcEEechhh
Confidence 5788999998888888999988876433322 244678999998853323334443 35566665435888877764
No 70
>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A
Probab=21.67 E-value=1.4e+02 Score=29.51 Aligned_cols=63 Identities=17% Similarity=0.125 Sum_probs=40.9
Q ss_pred CceEEEeecCCcchHHHHHHHHHHHHHCCCeEEEeCCCcccc--hhHH-HHHHHHcCCccceEEcCCCCC
Q psy5979 48 RSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILS--TPAV-SALIRKHQVTGGIVLTASHNP 114 (499)
Q Consensus 48 ~~~VvVg~D~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~g~~p--TP~~-~fav~~~~~~gGI~ITaSHNP 114 (499)
+.+|++--|.+. . .+++++.++...|++|....+.+..| .|.+ ..+ +..-...|.-|+-.|+|
T Consensus 180 glkva~vGD~~n--n-va~Sl~~~~~~lG~~v~~~~P~~~~p~~~~~~~~~~-~~~~~~~g~~i~~~~d~ 245 (365)
T 4amu_A 180 NKKIVFIGDYKN--N-VGVSTMIGAAFNGMHVVMCGPDNYKNEIDKNVLAKC-IELFKRNGGSLRFSTDK 245 (365)
T ss_dssp TCEEEEESSTTS--H-HHHHHHHHHHHTTCEEEEESCGGGGGGSCHHHHHHH-HHHHHHHSCEEEEESCH
T ss_pred CCEEEEECCCCc--c-hHHHHHHHHHHcCCEEEEECCccccCCCcHHHHHHH-HHHHHHcCCEEEEECCH
Confidence 667777779874 2 68999999999999999985555666 5543 322 21111234455556666
No 71
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=20.88 E-value=3.3e+02 Score=23.81 Aligned_cols=62 Identities=11% Similarity=0.154 Sum_probs=44.7
Q ss_pred eEEEeec------CCcchHHHHHHHHHHHHHCCCeEEEeCCCcccchhHHHHHHHHc-------CCccceEEcCCCCC
Q psy5979 50 VLVVGGD------GRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKH-------QVTGGIVLTASHNP 114 (499)
Q Consensus 50 ~VvVg~D------~R~~s~~~a~a~a~gL~s~Gi~V~~~~~~g~~pTP~~~fav~~~-------~~~gGI~ITaSHNP 114 (499)
-++|+.. .|..+..=++.+...|...|++|.... -...-.+.-+++.+ ++++.+++=+||--
T Consensus 46 ALIInn~~f~~~~~R~G~~~Da~~L~~~f~~LgF~V~~~~---dlt~~em~~~l~~f~~~~d~~~~d~~v~~~lsHG~ 120 (178)
T 2h54_A 46 ALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVDVKK---NLTASDMTTELEAFAHRPEHKTSDSTFLVFMSHGI 120 (178)
T ss_dssp EEEEECCCCSSSCCCTTHHHHHHHHHHHHHHTTCEEEEEE---SCCHHHHHHHHHHHHTCGGGGGCSCEEEEEESCBC
T ss_pred EEEEehhhcCCCccCCCCHHHHHHHHHHHHHCCCEEEEec---CCCHHHHHHHHHHHHhhhhcCCCCEEEEEEecCCC
Confidence 3566655 588889999999999999999999873 34455555555443 44667777789954
No 72
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*
Probab=20.17 E-value=2.8e+02 Score=28.00 Aligned_cols=59 Identities=19% Similarity=0.164 Sum_probs=27.9
Q ss_pred CCCCCeEEEeCCcccccchhhHHHHHhhCCCceEEEeecCCc----chHHHHHHHHHHHHHCCCeEE
Q psy5979 18 KLKGSVLVVGGDGRYFGDVAVDKIIKISGIRSVLVVGGDGRY----FGDVAVDKIIKISAANGVAKL 80 (499)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~VvVg~D~R~----~s~~~a~a~a~gL~s~Gi~V~ 80 (499)
..++..||+|+.. +|..++..+.+.+. +..+|-+..+. ..+.+.+.+.+.|...|++++
T Consensus 192 ~~~~~vvVIGgG~---ig~E~A~~l~~~g~-~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~ 254 (490)
T 2bc0_A 192 KDIKRVAVVGAGY---IGVELAEAFQRKGK-EVVLIDVVDTCLAGYYDRDLTDLMAKNMEEHGIQLA 254 (490)
T ss_dssp TTCCEEEEECCSH---HHHHHHHHHHHTTC-EEEEEESSSSTTTTTSCHHHHHHHHHHHHTTTCEEE
T ss_pred cCCceEEEECCCH---HHHHHHHHHHHCCC-eEEEEEcccchhhhHHHHHHHHHHHHHHHhCCeEEE
Confidence 3455666665441 44445555544332 12233333332 234555555555555666554
No 73
>3c5y_A Ribose/galactose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.81A {Novosphingobium aromaticivorans}
Probab=20.02 E-value=2.2e+02 Score=26.16 Aligned_cols=67 Identities=15% Similarity=0.090 Sum_probs=39.4
Q ss_pred CCcEEEEcCCCCCChH------HHHHHHHHhcCCCcceeeecccCCCCCCCCCC---C--CcccHHHHHHHHHhCCCcEE
Q psy5979 211 PPFKLLINAMHGVTGP------YVKKIFLEELGAQPDNAVNTTPLPDFGGHHPD---P--NLTYAADLVQAMQAGDFDLG 279 (499)
Q Consensus 211 ~~lkVvvD~~~G~~~~------~~~~il~~~lG~~~~~~v~~~~d~~F~~~~p~---P--~~~~l~~l~~~v~~~~adlg 279 (499)
..+||.+=-.++.++. .+.+.| ++.|.+|+ +. ++..++ + -+.....+.+.|.+..+|+|
T Consensus 18 ~~mkiali~~~sqa~kN~~lKe~i~~~L-~~~G~eV~---D~------G~~s~~d~~svDYPd~a~~vA~~V~~g~~d~G 87 (231)
T 3c5y_A 18 QGMKIALIIENSQAAKNAVVHEALTTVA-EPLGHKVF---NY------GMYTAEDKASLTYVMNGLLAGILLNSGAADFV 87 (231)
T ss_dssp -CCEEEECCCGGGGGGHHHHHHHHHHHH-GGGTCEEE---EC------CCCSTTCSSCCCHHHHHHHHHHHHHHTSCSEE
T ss_pred hcceEEEEecCCHhhhHHHHHHHHHHHH-HHCCCEEE---Ee------CCCCCCCCCCCChHHHHHHHHHHHHcCCCCeE
Confidence 4678877666666544 455556 77888754 22 111111 1 12345567777888888888
Q ss_pred EeeCCCCC
Q psy5979 280 AAFDGDGD 287 (499)
Q Consensus 280 ia~D~DgD 287 (499)
|.+.|.|-
T Consensus 88 IliCGTGi 95 (231)
T 3c5y_A 88 VTGCGTGM 95 (231)
T ss_dssp EEEESSSH
T ss_pred EEEcCCcH
Confidence 77777653
Done!