RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5979
(499 letters)
>gnl|CDD|100087 cd03085, PGM1, Phosphoglucomutase 1 (PGM1) catalyzes the
bidirectional interconversion of glucose-1-phosphate
(G-1-P) and glucose-6-phosphate (G-6-P) via a glucose
1,6-diphosphate intermediate, an important metabolic
step in prokaryotes and eukaryotes. In one direction,
G-1-P produced from sucrose catabolism is converted to
G-6-P, the first intermediate in glycolysis. In the
other direction, conversion of G-6-P to G-1-P generates
a substrate for synthesis of UDP-glucose which is
required for synthesis of a variety of cellular
constituents including cell wall polymers and
glycoproteins. The PGM1 family also includes a
non-enzymatic PGM-related protein (PGM-RP) thought to
play a structural role in eukaryotes, as well as
pp63/parafusin, a phosphoglycoprotein that plays an
important role in calcium-regulated exocytosis in
ciliated protozoans. PGM1 belongs to the
alpha-D-phosphohexomutase superfamily which includes
several related enzymes that catalyze a reversible
intramolecular phosphoryl transfer on their sugar
substrates. Other members of this superfamily include
phosphoglucosamine mutase (PNGM),
phosphoacetylglucosamine mutase (PAGM), the bacterial
phosphomannomutase ManB, the bacterial
phosphoglucosamine mutase GlmM, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
these enzymes has four domains with a centrally located
active site formed by four loops, one from each domain.
All four domains are included in this alignment model.
Length = 548
Score = 755 bits (1953), Expect = 0.0
Identities = 271/458 (59%), Positives = 327/458 (71%), Gaps = 35/458 (7%)
Query: 1 EHYTENFIQSILTALGD-KLKGSVLVVGGDGRYFGDVAVDKIIKISGIRSVLVVGGDGRY 59
+Y ENF+QSI AL KLKG+ LVVGGDGRY+ A+ IIKI+
Sbjct: 28 PNYLENFVQSIFNALPPEKLKGATLVVGGDGRYYNKEAIQIIIKIA-------------- 73
Query: 60 FGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQVTGGIVLTASHNPGGPDN 119
AANGV K++VGQNG+LSTPAVSA+IRK + TGGI+LTASHNPGGP+
Sbjct: 74 -------------AANGVGKVVVGQNGLLSTPAVSAVIRKRKATGGIILTASHNPGGPEG 120
Query: 120 DFGIKFNTSNGGPAPDAVTENIYKITTQIKTYSIVPDLKVDITSIGSSSYEVDGAQFQVD 179
DFGIK+NTSNGGPAP++VT+ IY+IT +I Y I D VD++ IG + G F V+
Sbjct: 121 DFGIKYNTSNGGPAPESVTDKIYEITKKITEYKIADDPDVDLSKIGV--TKFGGKPFTVE 178
Query: 180 VIDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINAMHGVTGPYVKKIFLEELGAQ 239
VIDSVE Y++LMKEIFDF ++ L+ R FK+ +AMHGVTGPY KKIF+EELGA
Sbjct: 179 VIDSVEDYVELMKEIFDFDAIKKLLS----RKGFKVRFDAMHGVTGPYAKKIFVEELGAP 234
Query: 240 PDNAVNTTPLPDFGGHHPDPNLTYAADLVQAMQAGDFDLGAAFDGDGDRNMVLGKKAFFV 299
+ VN TPLPDFGG HPDPNLTYA DLV+ M++G+ D GAA DGDGDRNM+LGK FFV
Sbjct: 235 ESSVVNCTPLPDFGGGHPDPNLTYAKDLVELMKSGEPDFGAASDGDGDRNMILGK-GFFV 293
Query: 300 NPSDSLAVLAAHLDSIPYFKKTGVKGYARSMPTGAAVDRVAKANNKELFEVPTGWKYFGN 359
PSDS+AV+AA+ IPYF K G+KG ARSMPT A+DRVAK LFE PTGWK+FGN
Sbjct: 294 TPSDSVAVIAANAKLIPYFYKGGLKGVARSMPTSGALDRVAKKLGIPLFETPTGWKFFGN 353
Query: 360 LMDAGRLSLCGEESFGTGSDHIREKDGIWAVLAWLSVVEHTGKPVEEILKSHWKQYGRNY 419
LMDAG+LSLCGEESFGTGSDHIREKDG+WAVLAWLS++ H VE+I+K HW++YGRN+
Sbjct: 354 LMDAGKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILAHRNVSVEDIVKEHWQKYGRNF 413
Query: 420 FTRYDYENCSAAPCNQMMDELEKKVSAPEFKGVTLSAE 457
+TRYDYE + N+MMD L VS G +
Sbjct: 414 YTRYDYEEVDSEAANKMMDHLRALVSDLPGVGKSGDKG 451
>gnl|CDD|177942 PLN02307, PLN02307, phosphoglucomutase.
Length = 579
Score = 612 bits (1580), Expect = 0.0
Identities = 245/468 (52%), Positives = 314/468 (67%), Gaps = 56/468 (11%)
Query: 1 EHYTENFIQSILTAL-GDKLKGSVLVVGGDGRYFGDVAVDKIIKISGIRSVLVVGGDGRY 59
E+Y NF+Q++ AL +K+KG+ LV+GGDGRYF A I+I
Sbjct: 40 ENYLANFVQALFNALPAEKVKGATLVLGGDGRYFNKEA----IQI--------------- 80
Query: 60 FGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQ---VTGGIVLTASHNPGG 116
IIKI+AANGV ++ VGQNG+LSTPAVSA+IR+ GG +LTASHNPGG
Sbjct: 81 --------IIKIAAANGVRRVWVGQNGLLSTPAVSAVIRERDGSKANGGFILTASHNPGG 132
Query: 117 PDNDFGIKFNTSNGGPAPDAVTENIYKITTQIKTYSIVPDL-KVDITSIGSSSYEVDGAQ 175
P+ DFGIK+N +G PAP+++T+ IY T IK Y + D+ VD++++G + +
Sbjct: 133 PEEDFGIKYNYESGQPAPESITDKIYGNTLTIKEYKMAEDIPDVDLSAVGVTKFGGP-ED 191
Query: 176 FQVDVIDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINAMHGVTGPYVKKIFLEE 235
F V+VID VE Y++LMK IFDF ++ L+ RP F +AMHGVTG Y K+IF+EE
Sbjct: 192 FDVEVIDPVEDYVKLMKSIFDFELIKKLLS----RPDFTFCFDAMHGVTGAYAKRIFVEE 247
Query: 236 LGAQPDNAVNTTPLPDFGGHHPDPNLTYAADLVQAMQAGDF-------DLGAAFDGDGDR 288
LGA + +N P DFGG HPDPNLTYA +LV+ M G + GAA DGDGDR
Sbjct: 248 LGAPESSLLNCVPKEDFGGGHPDPNLTYAKELVKRMGLGKTSYGDEPPEFGAASDGDGDR 307
Query: 289 NMVLGKKAFFVNPSDSLAVLAAH-LDSIPYFKKTGVKGYARSMPTGAAVDRVAKANNKEL 347
NM+LGK+ FFV PSDS+A++AA+ ++IPYF G+KG ARSMPT AA+D VAK N
Sbjct: 308 NMILGKR-FFVTPSDSVAIIAANAQEAIPYFSG-GLKGVARSMPTSAALDVVAKKLNLPF 365
Query: 348 FEVPTGWKYFGNLMDAGRLSLCGEESFGTGSDHIREKDGIWAVLAWLSVVEHTGK----- 402
FEVPTGWK+FGNLMDAG+LS+CGEESFGTGSDHIREKDGIWAVLAWLS++ H K
Sbjct: 366 FEVPTGWKFFGNLMDAGKLSICGEESFGTGSDHIREKDGIWAVLAWLSILAHKNKDVLPG 425
Query: 403 ----PVEEILKSHWKQYGRNYFTRYDYENCSAAPCNQMMDELEKKVSA 446
VE+I++ HW YGRN+++RYDYEN + N+MMD L V+
Sbjct: 426 GKLVTVEDIVREHWATYGRNFYSRYDYENVDSEAANKMMDHLRDLVNK 473
>gnl|CDD|236050 PRK07564, PRK07564, phosphoglucomutase; Validated.
Length = 543
Score = 450 bits (1160), Expect = e-154
Identities = 144/445 (32%), Positives = 209/445 (46%), Gaps = 68/445 (15%)
Query: 2 HYTENFIQSILTALGDKLKGSVLVVGGDGRYFGDVAVDKIIKISGIRSVLVVGGDGRYFG 61
+ EN I +I A+ + +G GI L VGGD
Sbjct: 53 SFNENHILAIFQAICE-YRGK----------------------QGITGPLFVGGDTHALS 89
Query: 62 DVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQVT-----GGIVLTASHNPGG 116
+ A+ +++ AANGV +IVG+ G TPAVS I K+ GIV+T SHNP
Sbjct: 90 EPAIQSALEVLAANGVGVVIVGRGGYTPTPAVSHAILKYNGRGGGLADGIVITPSHNP-- 147
Query: 117 PDNDFGIKFNTSNGGPAPDAVTENIYKITTQIKTYSIVPDLKVDITSIGSSSYEVDGAQF 176
D GIK+N NGGPA VT+ I ++ Y + + I + A
Sbjct: 148 -PEDGGIKYNPPNGGPADTDVTDAIEARANELLAYGLK-----GVKRIP---LDRALASM 198
Query: 177 QVDVIDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINAMHGVTGPYVKKIF---- 232
V+VID V Y++ ++ +FDF ++ +G +L ++ + G TGPY K I
Sbjct: 199 TVEVIDPVADYVEDLENVFDFDAIRK-----AG---LRLGVDPLGGATGPYWKAIAERYG 250
Query: 233 --LEELGAQPDNAVNTTPLPDFGGHHPDPNLTYA-ADLVQAMQAGDFDLGAAFDGDGDRN 289
L + A D N PL D G D + YA A L+ FDL A D DGDR+
Sbjct: 251 LDLTVVNAPVDPTFNFMPLDDDGKIRMDCSSPYAMAGLL--ALKDAFDLAFANDPDGDRH 308
Query: 290 MVLGKKAFFVNPSDSLAVLAAHLDS-IP-YFKKTGVKGYARSMPTGAAVDRVAKANNKEL 347
++ +NP+ LAV A+L P + GV +++ + A +DRVA ++L
Sbjct: 309 GIVTP-GGLMNPNHYLAVAIAYLFHHRPGWRAGAGV---GKTLVSSAMIDRVAAKLGRKL 364
Query: 348 FEVPTGWKYFGNLMDAGRLSLCGEESFGT------GSDHIREKDGIWAVLAWLSVVEHTG 401
+EVP G+K+F N +D G L GEES G GS +KDG+ AVL ++ TG
Sbjct: 365 YEVPVGFKWFVNGLDDGSLGFGGEESAGASFLRRDGSVWTTDKDGLIAVLLAAEILAVTG 424
Query: 402 KPVEEILKSHWKQYGRNYFTRYDYE 426
K EI + W ++GR Y++R+D
Sbjct: 425 KSPSEIYRELWARFGRPYYSRHDAP 449
>gnl|CDD|223111 COG0033, Pgm, Phosphoglucomutase [Carbohydrate transport and
metabolism].
Length = 524
Score = 400 bits (1030), Expect = e-135
Identities = 151/473 (31%), Positives = 217/473 (45%), Gaps = 67/473 (14%)
Query: 1 EHYTENFIQSILTALGDKLKGSVLVVGGDGRYFGDVAVDKIIKISGIRSVLVVGGDGRYF 60
E++ FIQ+I + GI LVVGGD
Sbjct: 34 ENHILAFIQAIADYRAE---------------------------GGIGGPLVVGGDTHAL 66
Query: 61 GDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQV-----TGGIVLTASHNPG 115
+ A+ +++ AANGV ++ GQ G TPA S I H GIVLT SHNP
Sbjct: 67 SEPAIQSALEVLAANGVEVIVQGQGGFTPTPAASHAILTHNGKYKALADGIVLTPSHNP- 125
Query: 116 GPDNDFGIKFNTSNGGPAPDAVTENIYKITTQIKTYSIVPDLKVDITSIGSSSYEVDGAQ 175
P D GIK+N NGGPAP+ VT+ I + Y I +D+ IG +
Sbjct: 126 -P-EDGGIKYNPPNGGPAPEKVTDAIEARANDL--YKIG---LLDVKRIG---LDQAYGS 175
Query: 176 FQVDVIDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINAMHGVTGPYVKKIFLEE 235
V +ID V+ Y++L++EIFDF ++ +L + + GVTGPY K I +
Sbjct: 176 LTVKIIDPVKDYVELLEEIFDFDAIRKAGL--------RLGFDPLGGVTGPYWKAIAEKY 227
Query: 236 LGAQPDNAVNTTPLPDFGGHHPDPNLTYAADLVQAMQAGD-----FDLGAAFDGDGDRNM 290
L N P PDF G PD N+ AM +D AA DGDGDR+
Sbjct: 228 LLNLTGVNQNVDPTPDFMGLDPDGNIRMDCSSPCAMAGLLRLRDKYDFAAANDGDGDRHG 287
Query: 291 VLGKKAFFVNPSDSLAVLAAHLDSIPYFKKTGVKGYARSMPTGAAVDRVAKANNKELFEV 350
++ A +NP+ SLAV +L + G+ +++ + AA+DRV + L+EV
Sbjct: 288 IVTPGAGLMNPNHSLAVAIEYLFLHRPYWG-GIVAVGKTLVSSAAIDRVVAKLGRGLYEV 346
Query: 351 PTGWKYFGNLMDAGRLSLCGEESFGTGSDHIREKDGIWAVLAWLSVV-----EHTGKPVE 405
P G+K+F + +DAG GEES G+ +REK G+WA +++ E T
Sbjct: 347 PVGFKWFVDGLDAGSFGFGGEES--AGASFLREKGGVWATDKDGNILALLAAEITAV-TG 403
Query: 406 EILKSHWKQYGRNYFTRYDYENCSAAPCNQMMDELEKKVSAPEFKGVTLSAEG 458
+I + H+ + GRN+ R DYE A N L +K+S TL+ +
Sbjct: 404 KIPQEHYAELGRNFG-RPDYERVDAEAANAQKARL-RKLSPEMVSATTLAGDP 454
>gnl|CDD|100093 cd05800, PGM_like2, This PGM-like (phosphoglucomutase-like) protein
of unknown function belongs to the
alpha-D-phosphohexomutase superfamily and is found in
both archaea and bacteria. The
alpha-D-phosphohexomutases include several related
enzymes that catalyze a reversible intramolecular
phosphoryl transfer on their sugar substrates. Other
members of this superfamily include phosphoglucosamine
mutase (PNGM), phosphoacetylglucosamine mutase (PAGM),
the bacterial phosphomannomutase ManB, the bacterial
phosphoglucosamine mutase GlmM, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
these enzymes has four structural domains (subdomains)
with a centrally located active site formed by four
loops, one from each subdomain. All four subdomains are
included in this alignment model.
Length = 461
Score = 208 bits (533), Expect = 6e-62
Identities = 106/377 (28%), Positives = 179/377 (47%), Gaps = 39/377 (10%)
Query: 51 LVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQVTGGIVLTA 110
+VVG D R+ + + ++ AANG+ + + + TPAVS ++K GG+++TA
Sbjct: 42 VVVGYDTRFLSEEFARAVAEVLAANGIDVYLS--DRPVPTPAVSWAVKKLGAAGGVMITA 99
Query: 111 SHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITTQIKTYSIVPDLKVDITSIGSSSYE 170
SHNP G+K + GG A +T I
Sbjct: 100 SHNPP---EYNGVKVKPAFGGSALPEITAAIEARLASG-----------------EPPGL 139
Query: 171 VDGAQFQVDVIDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINAMHGVTGPYVKK 230
A+ ++ ID YL+ ++ + D I+ + K++++ M+G Y+++
Sbjct: 140 EARAEGLIETIDPKPDYLEALRSLVDL----EAIREAGL----KVVVDPMYGAGAGYLEE 191
Query: 231 IFLEELGAQPDNAVNTTPLPDFGGHHPDPNLTYAADLVQAMQAGDFDLGAAFDGDGDRNM 290
+ L G + + P FGG P+P +L +A++ G DLG A DGD DR
Sbjct: 192 L-LRGAGVDVE-EIRAERDPLFGGIPPEPIEKNLGELAEAVKEGGADLGLATDGDADRIG 249
Query: 291 VLGKKAFFVNPSDSLAVLAAHLDSIPYFKKTGVKG-YARSMPTGAAVDRVAKANNKELFE 349
+ +K F++P+ LA+L +L + G++G +++ T +DR+A+ + ++E
Sbjct: 250 AVDEKGNFLDPNQILALLLDYL-----LENKGLRGPVVKTVSTTHLIDRIAEKHGLPVYE 304
Query: 350 VPTGWKYFGNLMDAGRLSLCGEESFGTG-SDHIREKDGIWAVLAWLSVVEHTGKPVEEIL 408
P G+KY M + + GEES G G HI E+DGI A L L V TGKP+ E++
Sbjct: 305 TPVGFKYIAEKMLEEDVLIGGEESGGLGIRGHIPERDGILAGLLLLEAVAKTGKPLSELV 364
Query: 409 KSHWKQYGRNYFTRYDY 425
++YG +Y+ R D
Sbjct: 365 AELEEEYGPSYYDRIDL 381
>gnl|CDD|100086 cd03084, phosphohexomutase, The alpha-D-phosphohexomutase
superfamily includes several related enzymes that
catalyze a reversible intramolecular phosphoryl transfer
on their sugar substrates. Members of this family
include the phosphoglucomutases (PGM1 and PGM2),
phosphoglucosamine mutase (PNGM),
phosphoacetylglucosamine mutase (PAGM), the bacterial
phosphomannomutase ManB, the bacterial
phosphoglucosamine mutase GlmM, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). These
enzymes play important and diverse roles in carbohydrate
metabolism in organisms from bacteria to humans. Each of
these enzymes has four domains with a centrally located
active site formed by four loops, one from each domain.
All four domains are included in this alignment model.
Length = 355
Score = 204 bits (521), Expect = 2e-61
Identities = 95/327 (29%), Positives = 157/327 (48%), Gaps = 41/327 (12%)
Query: 103 TGGIVLTASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITTQIKTYSIVPDLKVDIT 162
TGGI++TASHNP D GIKF +G P + I + + S
Sbjct: 30 TGGIMITASHNPPE---DNGIKFVDPDGEPIASEEEKAIEDLAEKEDEPS---------- 76
Query: 163 SIGSSSYEVDGAQFQVDVIDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINAMHG 222
+ +YE+ G+ VD++ Y + +K++FD + + FK+++++++G
Sbjct: 77 ---AVAYELGGSVKAVDILQR---YFEALKKLFDV----AALSNK----KFKVVVDSVNG 122
Query: 223 VTGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDPN-LTYAADLVQAMQAGDFDLGAA 281
V GP ++ E+LGA +N P +FG +PDP T L+ ++A D G A
Sbjct: 123 VGGPIAPQLL-EKLGA-EVIPLNCEPDGNFGNINPDPGSETNLKQLLAVVKAEKADFGVA 180
Query: 282 FDGDGDRNMVLGKKAFFVNPSDSLAVLAAHLDSIPYFKKTGVKGYA-RSMPTGAAVDRVA 340
FDGD DR +V+ + F++ + LA+LA L F +G +++ + A+D+VA
Sbjct: 181 FDGDADRLIVVDENGGFLDGDELLALLAVEL-----FLTFNPRGGVVKTVVSSGALDKVA 235
Query: 341 KANNKELFEVPTGWKYFGNLMDAGRLSLCGEESFGTGS-DHIREKDGIWAVLAWLSVVEH 399
K ++ TG+K+ G M G + L GEES G + +DGI A L L ++ +
Sbjct: 236 KKLGIKVIRTKTGFKWVGEAMQEGDVVLGGEESGGVIFPEFHPGRDGISAALLLLEILAN 295
Query: 400 TGKPVEEILKSHWKQYGRNYFTRYDYE 426
GK + E+ + R Y+ R
Sbjct: 296 LGKSLSELF----SELPRYYYIRLKVR 318
>gnl|CDD|224034 COG1109, {ManB}, Phosphomannomutase [Carbohydrate transport and
metabolism].
Length = 464
Score = 187 bits (478), Expect = 6e-54
Identities = 104/419 (24%), Positives = 181/419 (43%), Gaps = 49/419 (11%)
Query: 52 VVGGDGRYFGDV---AVDKIIKISAANGV-AKLIVGQNGILSTPAVSALIRKHQVTGGIV 107
VVG D R ++ A+ + + G+ + G++ TPAV+ RK G++
Sbjct: 48 VVGRDTRLSSEMLAAALAAGL---TSAGIDVYDL----GLVPTPAVAFATRKLGADAGVM 100
Query: 108 LTASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITTQIKTYSIVPDLKVDITSIGSS 167
+TASHNP N GIKF S+GG D + E I I + ++
Sbjct: 101 ITASHNPP-EYN--GIKFFGSDGGKISDDIEEEIEAILAEEVDLPRPSWGELGRL----- 152
Query: 168 SYEVDGAQFQVDVIDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINAMHGVTGPY 227
+ D+++ Y++ +K + D K++++ +G G
Sbjct: 153 ----------KRIPDALDRYIEFIKSLVDVDLKLR---------GLKVVVDCANGAAGLV 193
Query: 228 VKKIFLEELGAQPDNAVNTTPLPDFGGHHPDPNLTYAADLVQAMQAGDFDLGAAFDGDGD 287
++ L+ELGA+ + +N P F +P+P T DL +A++ DLG AFDGD D
Sbjct: 194 APRL-LKELGAEVVS-INCDPDGLFPNINPNPGETELLDLAKAVKEHGADLGIAFDGDAD 251
Query: 288 RNMVLGKKAFFVNPSDSLAVLAAHLDSIPYFKKTGVKGYARSMPTGAAVDRVAKANNKEL 347
R +V+ ++ FV+ LA+LA +L +K + ++ + A++++AK ++
Sbjct: 252 RLIVVDERGNFVDGDQILALLAKYLL-----EKGKLPTVVTTVMSSLALEKIAKKLGGKV 306
Query: 348 FEVPTGWKYFGNLMDAGRLSLCGEESFGTG-SDHIREKDGIWAVLAWLSVVEHTGKPVEE 406
G KY M GEES DH+R DG+ A L L ++ +GK + E
Sbjct: 307 VRTKVGDKYIAEKMRENGAVFGGEESGHIIFPDHVRTGDGLLAALLVLELLAESGKSLSE 366
Query: 407 ILKSHWKQYGRNYFTRYDYENCS-AAPCNQMMDELEKKVSAPEFKGVTLSAEGRSGSWW 464
+L +Y ++ + A ++++EL + GV + E G
Sbjct: 367 LLAELLPKYPQSVEINVRVTDEGKAEVLEKLLEELREAKKVDTIDGVKVELED--GGRV 423
>gnl|CDD|217265 pfam02880, PGM_PMM_III, Phosphoglucomutase/phosphomannomutase,
alpha/beta/alpha domain III.
Length = 112
Score = 109 bits (275), Expect = 1e-28
Identities = 34/118 (28%), Positives = 50/118 (42%), Gaps = 9/118 (7%)
Query: 301 PSDSLAVLAAHLDSIPYFKKTGVKGY-ARSMPTGAAVDRVAKANNKELFEVPTGWKYFGN 359
D + L A Y + +++ + +DRVA+ +L G KY
Sbjct: 1 DGDQILALLAR-----YLLELKGGAGVVKTVMSSLGLDRVAEKLGGKLVRTKVGDKYVKE 55
Query: 360 LMDAGRLSLCGEESFGTGS--DHIREKDGIWAVLAWLSVVEHTGKPVEEILKSHWKQY 415
M G L GEES G D KDGI A L L ++ TGK + E+L+ ++Y
Sbjct: 56 KMREGGAVLGGEES-GHIIFLDFATTKDGILAALLVLEILAETGKSLSELLEELPERY 112
>gnl|CDD|234431 TIGR03990, Arch_GlmM, phosphoglucosamine mutase. The MMP1680
protein from Methanococcus maripaludis has been
characterized as the archaeal protein responsible for
the second step of UDP-GlcNAc biosynthesis. This GlmM
protein catalyzes the conversion of
glucosamine-6-phosphate to glucosamine-1-phosphate. The
first-characterized bacterial GlmM protein is modeled by
TIGR01455. These two families are members of the larger
phosphoglucomutase/phosphomannomutase family
(characterized by three domains: pfam02878, pfam02879
and pfam02880), but are not nearest neighbors to each
other. This model also includes a number of sequences
from non-archaea in the Bacteroides, Chlorobi,
Chloroflexi, Planctomycetes and Spirochaetes lineages.
Evidence supporting their inclusion in this equivalog as
having the same activity comes from genomic context and
phylogenetic profiling. A large number of these
organisms are known to produce exo-polysaccharide and
yet only appeared to contain the GlmS enzyme of the
GlmSMU pathway for UDP-GlcNAc biosynthesis
(GenProp0750). In some organisms including Leptospira,
this archaeal GlmM is found adjacent to the GlmS as well
as a putative GlmU non-orthologous homolog. Phylogenetic
profiling of the GlmS-only pattern using PPP identifies
members of this archaeal GlmM family as the
highest-scoring result [Central intermediary metabolism,
Amino sugars].
Length = 443
Score = 114 bits (289), Expect = 1e-27
Identities = 109/421 (25%), Positives = 168/421 (39%), Gaps = 86/421 (20%)
Query: 1 EHYTENFIQSILTALGDKLKGSVLVVGGDGRYFGDVAVDKIIKISGIRSVLVVGGDGRYF 60
E T + A G L+G +VVG D R G + + + I+G+ S G D
Sbjct: 15 EELTPELALKVGKAFGTYLRGGKVVVGRDTRTSGPMLENAV--IAGLLS---TGCD---- 65
Query: 61 GDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQVTGGIVLTASHNPGGPDND 120
V + GI TP + +R+ GGI++TASHNP N
Sbjct: 66 ----VVDL-----------------GIAPTPTLQYAVRELGADGGIMITASHNP-PEYN- 102
Query: 121 FGIKFNTSNGGPAPDAVTENIYKITTQIKTYSIVPDLKVDITSIGSSSYEVDGAQFQVD- 179
GIK S+G E I +I ++ D IG+ + + D ++
Sbjct: 103 -GIKLLNSDGTELSREQEEEIEEI---AESGDFER---ADWDEIGTVTSDEDAIDDYIEA 155
Query: 180 VIDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINAMHGV---TGPYVKKIFLEEL 236
++D V+V I+ FK++++ +G T PY+ L EL
Sbjct: 156 ILDKVDV---------------EAIRKK----GFKVVVDCGNGAGSLTTPYL----LREL 192
Query: 237 GAQPDNAVNTTPLPDFGGHHPDP---NLTYAADLVQAMQAGDFDLGAAFDGDGDRNMVLG 293
G + +N P F G +P+P NL + LV+A A DLG A DGD DR + +
Sbjct: 193 GCKVI-TLNCQPDGTFPGRNPEPTPENLKDLSALVKATGA---DLGIAHDGDADRLVFID 248
Query: 294 KKAFFVNPSDSLAVLAAHLDSIPYFKKTGVKGYARSMPTGAAVDRVAKANNKELFEVPTG 353
+K F+ +LA+ A +L V + S AV+ VA+ + E+ G
Sbjct: 249 EKGRFIGGDYTLALFAKYLLEHG--GGKVVTNVSSSR----AVEDVAERHGGEVIRTKVG 302
Query: 354 WKYFGNLMDAGRLSLCGEESFGTGS----DHIREKDGIWAVLAWLSVVEHTGKPVEEILK 409
M GE + G DH +DG+ A +L ++ GKP+ E+L
Sbjct: 303 EVNVAEKMKEEGAVFGGEGN---GGWIFPDHHYCRDGLMAAALFLELLAEEGKPLSELLA 359
Query: 410 S 410
Sbjct: 360 E 360
>gnl|CDD|217263 pfam02878, PGM_PMM_I, Phosphoglucomutase/phosphomannomutase,
alpha/beta/alpha domain I.
Length = 138
Score = 106 bits (268), Expect = 2e-27
Identities = 41/106 (38%), Positives = 53/106 (50%), Gaps = 6/106 (5%)
Query: 46 GIRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQVTGG 105
+VVG D RY + AANGV +++G +L TPA+S RK GG
Sbjct: 38 AGGGKVVVGRDTRYSSRELARALAAGLAANGVEVILLG---LLPTPALSFATRKLNADGG 94
Query: 106 IVLTASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITTQIKTY 151
I++TASHNP + GIKF S+GGP V E I I + Y
Sbjct: 95 IMITASHNPPDYN---GIKFYDSDGGPISPEVEEKIEAIIEKEDFY 137
>gnl|CDD|100094 cd05801, PGM_like3, This bacterial PGM-like
(phosphoglucomutase-like) protein of unknown function
belongs to the alpha-D-phosphohexomutase superfamily.
The alpha-D-phosphohexomutases include several related
enzymes that catalyze a reversible intramolecular
phosphoryl transfer on their sugar substrates. Other
members of this superfamily include phosphoglucosamine
mutase (PNGM), phosphoacetylglucosamine mutase (PAGM),
the bacterial phosphomannomutase ManB, the bacterial
phosphoglucosamine mutase GlmM, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
these enzymes has four domains with a centrally located
active site formed by four loops, one from each domain.
All four domains are included in this alignment model.
Length = 522
Score = 110 bits (276), Expect = 1e-25
Identities = 115/409 (28%), Positives = 177/409 (43%), Gaps = 55/409 (13%)
Query: 43 KISGIRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALI----R 98
K GI L +G D + A +++ AANGV +I +G TP +S I R
Sbjct: 54 KSQGITGPLFLGKDTHALSEPAFISALEVLAANGVEVIIQQNDGYTPTPVISHAILTYNR 113
Query: 99 KHQ--VTGGIVLTASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITTQIKTYSIVPD 156
+ GIV+T SHNP P+ D G K+N +GGPA +T I K +
Sbjct: 114 GRTEGLADGIVITPSHNP--PE-DGGFKYNPPHGGPADTDITRWIEKRANAL-------- 162
Query: 157 LKVDITSIGSSSYEVDGAQFQVDVIDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLL 216
L + + E A D V Y+ + + D I+ S +L
Sbjct: 163 LANGLKGVKRIPLEAALASGYTHRHDFVTPYVADLGNVIDMDA----IRKSG----LRLG 214
Query: 217 INAMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPD--------PNLTYA-ADL 267
++ + G + PY + I E VN P F D + YA A L
Sbjct: 215 VDPLGGASVPYWQPI--AEKYGLNLTVVNPKVDPTFRFMTLDHDGKIRMDCSSPYAMAGL 272
Query: 268 VQAMQAGDFDLGAAFDGDGDRNMVLGKKAFFVNPSDSLAVLAAHL-DSIPYFKKT-GV-K 324
++ FDL A D D DR+ ++ A +NP+ L+V +L P + K+ GV K
Sbjct: 273 LKLKD--KFDLAFANDPDADRHGIVTPSAGLMNPNHYLSVAIDYLFTHRPLWNKSAGVGK 330
Query: 325 GYARSMPTGAAVDRVAKANNKELFEVPTGWKYFGNLMDAGRLSLCGEESFGT------GS 378
S + +DRVA A ++L+EVP G+K+F + + G L GEES G G+
Sbjct: 331 TLVSS----SMIDRVAAALGRKLYEVPVGFKWFVDGLLDGSLGFGGEESAGASFLRRDGT 386
Query: 379 DHIREKDGIWAVLAWLS--VVEHTGKPVEEILKSHWKQYGRNYFTRYDY 425
+KDGI ++ L+ ++ TGK ++ + +++G Y+ R D
Sbjct: 387 VWTTDKDGI--IMCLLAAEILAVTGKDPGQLYQELTERFGEPYYARIDA 433
>gnl|CDD|100092 cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and
PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2
is thought to be a phosphopentomutase that catalyzes the
conversion of the nucleoside breakdown products,
ribose-1-phosphate and deoxyribose-1-phosphate to the
corresponding 5-phosphopentoses. PGM2L1 is thought to
catalyze the 1,3-bisphosphoglycerate-dependent synthesis
of glucose 1,6-bisphosphate and other
aldose-bisphosphates that serve as cofactors for several
sugar phosphomutases and possibly also as regulators of
glycolytic enzymes. PGM2 and PGM2L1 belong to the
alpha-D-phosphohexomutase superfamily which includes
several related enzymes that catalyze a reversible
intramolecular phosphoryl transfer on their sugar
substrates. Other members of this superfamily include
phosphoglucosamine mutase (PNGM),
phosphoacetylglucosamine mutase (PAGM), the bacterial
phosphomannomutase ManB, the bacterial
phosphoglucosamine mutase GlmM, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
these enzymes has four domains with a centrally located
active site formed by four loops, one from each domain.
All four domains are included in this alignment model.
Length = 487
Score = 109 bits (274), Expect = 1e-25
Identities = 98/418 (23%), Positives = 156/418 (37%), Gaps = 98/418 (23%)
Query: 48 RSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQVTGGIV 107
R V V+G D R+ + + AANG+ + + + TP +S +R GI+
Sbjct: 46 RGV-VIGYDSRHNSREFAELTAAVLAANGIKVYLF--DDLRPTPLLSFAVRHLGADAGIM 102
Query: 108 LTASHNPGGPDNDFGIKFNTSNGG----PAPDAVTENIYKITTQIKTYSIVPDLKVDITS 163
+TASHNP N G K +G P + E I + + I
Sbjct: 103 ITASHNPKE-YN--GYKVYWEDGAQIIPPHDAEIAEEIEAVLEPLDIKFEEALDSGLIKY 159
Query: 164 IGSSSYEVDGAQFQVDVIDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINAMHGV 223
IG E+D + YL+ +K+ + + K++ +HGV
Sbjct: 160 IGE---EID------------DAYLEAVKK-------LLVNPELNEGKDLKIVYTPLHGV 197
Query: 224 TGPYVKKIFLEELG----------AQPDNAVNTTPLPDFGGHHPDPN------LTYA--- 264
G +V + L+E G A+PD PDF PN L A
Sbjct: 198 GGKFVPRA-LKEAGFTNVIVVEEQAEPD--------PDF-PTVKFPNPEEPGALDLAIEL 247
Query: 265 ADLVQAMQAGDFDLGAAFDGDGDRNMVLGKKAFFVNPSDSL---------AVLAAHLDSI 315
A V A DL A D D DR V K + A+LA +L +
Sbjct: 248 AKKVGA------DLILATDPDADRLGVAVK-----DKDGEWRLLTGNEIGALLADYL--L 294
Query: 316 PYFKKTGV---KGY-ARSMPTGAAVDRVAKANNKELFEVPTGWKYFGNLM-----DAGRL 366
K+ G +++ + + ++AK ++ E TG+K+ GN + +
Sbjct: 295 EQRKEKGKLPKNPVIVKTIVSSELLRKIAKKYGVKVEETLTGFKWIGNKIEELESGGKKF 354
Query: 367 SLCGEESFG-TGSDHIREKDGIWAVLAWLSVVEH---TGKPVEEILKSHWKQYGRNYF 420
EES G +R+KDGI A + + GK + + L +++YG Y+
Sbjct: 355 LFGFEESIGYLVGPFVRDKDGISAAALLAEMAAYLKAQGKTLLDRLDELYEKYG--YY 410
>gnl|CDD|100089 cd03087, PGM_like1, This archaeal PGM-like
(phosphoglucomutase-like) protein of unknown function
belongs to the alpha-D-phosphohexomutase superfamily
which includes several related enzymes that catalyze a
reversible intramolecular phosphoryl transfer on their
sugar substrates. The alpha-D-phosphohexomutases include
several related enzymes that catalyze a reversible
intramolecular phosphoryl transfer on their sugar
substrates. Members of this superfamily include the
phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine
mutase (PNGM), phosphoacetylglucosamine mutase (PAGM),
the bacterial phosphomannomutase ManB, the bacterial
phosphoglucosamine mutase GlmM, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
these enzymes has four domains with a centrally located
active site formed by four loops, one from each domain.
All four domains are included in this alignment model.
Length = 439
Score = 103 bits (260), Expect = 6e-24
Identities = 103/406 (25%), Positives = 155/406 (38%), Gaps = 91/406 (22%)
Query: 14 ALGDKLKGSVLVVGGDGRYFGDVAVDKIIKISGIRSVLVVGGDGRYFGDVAVDKIIKISA 73
ALG L G +VVG D R G + + +I +G+ S G D V I
Sbjct: 26 ALGTYLGGGTVVVGRDTRTSGPMLKNAVI--AGLLSA---GCD--------VIDI----- 67
Query: 74 ANGVAKLIVGQNGILSTPAVSALIRKHQVTGGIVLTASHNPGGPDNDFGIKFNTSNGGPA 133
GI+ TPA+ +RK G+++TASHNP N GIK +G
Sbjct: 68 ------------GIVPTPALQYAVRKLGD-AGVMITASHNPP-EYN--GIKLVNPDGTEF 111
Query: 134 PDAVTENIYKITTQIKTYSIVPDLKVDITSIGSSSYEVDGA--QFQVDVIDSVEVYLQLM 191
E I +I + +V +GS D A ++ ++D V++
Sbjct: 112 SREQEEEIEEIIFSERF------RRVAWDEVGSV-RREDSAIDEYIEAILDKVDI----- 159
Query: 192 KEIFDFPKLQSLIKGSSGRPPFKLLINAMHG---VTGPYVKKIFLEELGAQPDNAVNTTP 248
G K++++ +G +T PY+ L ELG + +N P
Sbjct: 160 ----------------DGGKGLKVVVDCGNGAGSLTTPYL----LRELGCKVI-TLNANP 198
Query: 249 LPDFGGHHPDP---NLTYAADLVQAMQAGDFDLGAAFDGDGDRNMVLGKKAFFVNPSDSL 305
F G P+P NL+ +LV+A DLG A DGD DR + + +K F++ L
Sbjct: 199 DGFFPGRPPEPTPENLSELMELVRA---TGADLGIAHDGDADRAVFVDEKGRFIDGDKLL 255
Query: 306 AVLAAHLDSIPYFKKTGVKGYARSMPTGAAVDRVAKANNKELFEVPTGWKYFGNLMDAGR 365
A+LA +L V SM V+ V + E+ P G + M
Sbjct: 256 ALLAKYLLEEG--GGKVVTPVDASM----LVEDVVEEAGGEVIRTPVGDVHVAEEMIENG 309
Query: 366 LSLCGEESFGTGS----DHIREKDGIWAVLAWLSVVEHTGKPVEEI 407
GE + G DH +DGI L ++ E +
Sbjct: 310 AVFGGEPN---GGWIFPDHQLCRDGIMTAALLLELLAEEKPLSELL 352
>gnl|CDD|100091 cd03089, PMM_PGM, The phosphomannomutase/phosphoglucomutase
(PMM/PGM) bifunctional enzyme catalyzes the reversible
conversion of 1-phospho to 6-phospho-sugars (e.g.
between mannose-1-phosphate and mannose-6-phosphate or
glucose-1-phosphate and glucose-6-phosphate) via a
bisphosphorylated sugar intermediate. The reaction
involves two phosphoryl transfers, with an intervening
180 degree reorientation of the reaction intermediate
during catalysis. Reorientation of the intermediate
occurs without dissociation from the active site of the
enzyme and is thus, a simple example of processivity, as
defined by multiple rounds of catalysis without release
of substrate. Glucose-6-phosphate and
glucose-1-phosphate are known to be utilized for energy
metabolism and cell surface construction, respectively.
PMM/PGM belongs to the alpha-D-phosphohexomutase
superfamily which includes several related enzymes that
catalyze a reversible intramolecular phosphoryl transfer
on their sugar substrates. Other members of this
superfamily include phosphoglucosamine mutase (PNGM),
phosphoacetylglucosamine mutase (PAGM), the bacterial
phosphomannomutase ManB, the bacterial
phosphoglucosamine mutase GlmM, and the
phosphoglucomutases (PGM1 and PGM2). Each of these
enzymes has four domains with a centrally located active
site formed by four loops, one from each domain. All
four domains are included in this alignment model.
Length = 443
Score = 102 bits (256), Expect = 2e-23
Identities = 75/294 (25%), Positives = 116/294 (39%), Gaps = 71/294 (24%)
Query: 30 GRYFGDVAVDKIIKISGIRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQN---- 85
GR FG ++K G + V VVG DGR +++AA LI G
Sbjct: 24 GRAFGSWLLEK-----GAKKV-VVGRDGRLSSP-------ELAAA-----LIEGLLAAGC 65
Query: 86 -----GILSTPAVSALIRKHQVTGGIVLTASHNPGGPDNDFGIKFNTSNGGPAPDAVTEN 140
G++ TP + GG+++TASHNP G K G + + +
Sbjct: 66 DVIDIGLVPTPVLYFATFHLDADGGVMITASHNPP---EYNGFKIVIGGGPLSGEDIQA- 121
Query: 141 IYKITTQIKTYSIVPDLKVDITSIGSSSYEVDGAQFQVDVIDSVEVYLQLMKEIFDFPKL 200
+ + + + G+ +VD++ Y+ +
Sbjct: 122 LRERAEKGDFAAA----------------TGRGSVEKVDIL---PDYIDRLLSDIKL--- 159
Query: 201 QSLIKGSSGRPPFKLLINAMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDP- 259
G+ P K++++A +G GP ++ E LG + + P F HHPDP
Sbjct: 160 --------GKRPLKVVVDAGNGAAGPIAPQLL-EALGCEVI-PLFCEPDGTFPNHHPDPT 209
Query: 260 ---NLTYAADLVQAMQAGDFDLGAAFDGDGDRNMVLGKKAFFVNPSDSLAVLAA 310
NL DL+ A++ DLG AFDGDGDR V+ +K + D L L A
Sbjct: 210 DPENL---EDLIAAVKENGADLGIAFDGDGDRLGVVDEKGEIIWG-DRLLALFA 259
>gnl|CDD|188111 TIGR01132, pgm, phosphoglucomutase, alpha-D-glucose
phosphate-specific. This enzyme interconverts
alpha-D-glucose-1-P and alpha-D-glucose-6-P [Energy
metabolism, Sugars].
Length = 544
Score = 95.7 bits (238), Expect = 5e-21
Identities = 112/434 (25%), Positives = 169/434 (38%), Gaps = 55/434 (12%)
Query: 46 GIRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALI-----RKH 100
GI L +G D + A ++++ AANGV ++ NG TPAVS I +
Sbjct: 76 GITGPLYIGKDTHALSEPAFISVLEVLAANGVEVIVQENNGFTPTPAVSHAILTHNKKGE 135
Query: 101 QVTGGIVLTASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITTQIKTYSIVPDLKVD 160
+ GIV+T SHNP D GIK+N NGGPA T+ I + L
Sbjct: 136 PLADGIVITPSHNP---PEDGGIKYNPPNGGPADTEATQAIEDRANAL--------LANG 184
Query: 161 ITSIGSSSYEVDGAQFQVDVIDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINAM 220
+ + A V D V+ Y+ + +I D +Q +L ++ +
Sbjct: 185 LKGVKRLPLAQALASGTVKAHDLVQPYVDGLADIVDMAAIQK--------AGLRLGVDPL 236
Query: 221 HGVTGPYVKKIF------LEELGAQPDNAVNTTPLPDFGGHHPDPNLTYA-ADLVQAMQA 273
G Y K+I L + Q D L G D + YA A L+
Sbjct: 237 GGSGIDYWKRIAEKYNLNLTLVNPQVDPTFRFMTLDKDGKIRMDCSSPYAMAGLLALRD- 295
Query: 274 GDFDLGAAFDGDGDRNMVLGKKAFFVNPSDSLAV----LAAHLDSIPYFKKTGVKGYARS 329
+DL D D DR+ ++ +NP+ LAV L H G ++
Sbjct: 296 -KYDLAFGNDPDYDRHGIVTPAG-LMNPNHYLAVAINYLFQHRPQWG-----GDVAVGKT 348
Query: 330 MPTGAAVDRVAKANNKELFEVPTGWKYFGNLMDAGRLSLCGEESFGT------GSDHIRE 383
+ + A +DRV ++L EVP G+K+F + + G GEES G G+ +
Sbjct: 349 LVSSAMIDRVVADLGRQLVEVPVGFKWFVDGLFDGSFGFGGEESAGASFLRFDGTPWSTD 408
Query: 384 KDGIWAVLAWLSVVEHTGKPVEEILKSHWKQYGRNYFTRYDYENCSAAPCNQMMDELEKK 443
KDGI L + TGK ++ ++G + R AP KK
Sbjct: 409 KDGIIMCLLAAEITAVTGKNPQQHYNELAAKFGAPSYNRIQ------APATSAQKARLKK 462
Query: 444 VSAPEFKGVTLSAE 457
+S TL+ +
Sbjct: 463 LSPEMVSATTLAGD 476
>gnl|CDD|100095 cd05802, GlmM, GlmM is a bacterial phosphoglucosamine mutase (PNGM)
that belongs to the alpha-D-phosphohexomutase
superfamily. It is required for the interconversion of
glucosamine-6-phosphate and glucosamine-1-phosphate in
the biosynthetic pathway of UDP-N-acetylglucosamine, an
essential precursor to components of the cell envelope.
In order to be active, GlmM must be phosphorylated,
which can occur via autophosphorylation or by the
Ser/Thr kinase StkP. GlmM functions in a classical
ping-pong bi-bi mechanism with
glucosamine-1,6-diphosphate as an intermediate. Other
members of the alpha-D-phosphohexomutase superfamily
include phosphoglucosamine mutase (PNGM),
phosphoacetylglucosamine mutase (PAGM), the bacterial
phosphomannomutase ManB, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
these enzymes has four domains with a centrally located
active site formed by four loops, one from each domain.
All four domains are included in this alignment model.
Length = 434
Score = 94.1 bits (235), Expect = 1e-20
Identities = 91/348 (26%), Positives = 138/348 (39%), Gaps = 81/348 (23%)
Query: 86 GILSTPAVSALIRKHQVTGGIVLTASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKIT 145
G++ TPAV+ L RK + G+V++ASHNP DN GIKF +S+G PD V E I +
Sbjct: 72 GVIPTPAVAYLTRKLRADAGVVISASHNP-FEDN--GIKFFSSDGYKLPDEVEEEIEALI 128
Query: 146 TQIKTYSIVPDLKVDITSIGSSSYEVDGAQFQVDVIDSVEVYLQLMKEIFDFPKLQSLIK 205
+ +L IG + D+ Y++ +K F L L
Sbjct: 129 DKEL------ELPPTGEKIGRVYR----------IDDARGRYIEFLKSTFPKDLLSGL-- 170
Query: 206 GSSGRPPFKLLINAMHGVT---GPYVKKIFLEELGAQPDNAVNTTPLPD-------FGGH 255
K++++ +G P V ELGA+ +N PD G
Sbjct: 171 --------KIVLDCANGAAYKVAPEV----FRELGAEVI-VINNA--PDGLNINVNCGST 215
Query: 256 HPDPNLTYAADLVQAMQAGDFDLGAAFDGDGDRNMVLGKKAFFVNPSDSLAVLAAHLDSI 315
HP+ L +A+ DLG AFDGD DR + + +K V+ LA+ A L
Sbjct: 216 HPES-------LQKAVLENGADLGIAFDGDADRVIAVDEKGNIVDGDQILAICARDL--- 265
Query: 316 PYFKKTGVKGYARSMPTGAAV---------DRVAKANNKELFEVPTGWKYFGNLMDAGRL 366
K+ G V ++ K +L G +Y M
Sbjct: 266 ---KERGRL------KGNTVVGTVMSNLGLEKALKELGIKLVRTKVGDRYVLEEMLKHGA 316
Query: 367 SLCGEESFGTG----SDHIREKDGIWAVLAWLSVVEHTGKPVEEILKS 410
+L GE+S G DH DG+ L L++++ +GK + E+
Sbjct: 317 NLGGEQS---GHIIFLDHSTTGDGLLTALQLLAIMKRSGKSLSELASD 361
>gnl|CDD|130522 TIGR01455, glmM, phosphoglucosamine mutase. This model describes
GlmM, phosphoglucosamine mutase, also designated in MrsA
and YhbF E. coli, UreC in Helicobacter pylori, and
femR315 or FemD in Staphlococcus aureus. It converts
glucosamine-6-phosphate to glucosamine-1-phosphate as
part of the pathway toward UDP-N-acetylglucosamine for
peptidoglycan and lipopolysaccharides [Cell envelope,
Biosynthesis and degradation of murein sacculus and
peptidoglycan, Central intermediary metabolism, Amino
sugars].
Length = 443
Score = 92.8 bits (231), Expect = 3e-20
Identities = 89/372 (23%), Positives = 147/372 (39%), Gaps = 54/372 (14%)
Query: 48 RSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQVTGGIV 107
+V+G D R G + + + + GV L++G L TPAV+ L R + G++
Sbjct: 38 APRVVIGKDTRLSGYMLENALAAGLNSAGVDVLLLG---PLPTPAVAYLTRTLRADAGVM 94
Query: 108 LTASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITTQIKTYSIVPDLKVDITSIGSS 167
++ASHNP DN GIKF G DA I + P + + +G
Sbjct: 95 ISASHNP-YEDN--GIKFFGPGGFKLDDATEAAI-----EALLDEADPLPRPESEGLGRV 146
Query: 168 SYEVDGAQFQVDVIDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINAMHGVTGPY 227
D+V Y++ +K P+ +L SG K++++ +G
Sbjct: 147 ----------KRYPDAVGRYIEFLKS--TLPRGLTL----SG---LKVVLDCANGAAYKV 187
Query: 228 VKKIFLEELGAQPDNAVNTTPL-----PDFGGHHPDPNLTYAADLVQAMQAGDFDLGAAF 282
+F ELGA+ A+ P G H D L +A++ DLG AF
Sbjct: 188 APHVF-RELGAEV-IAIGVEPDGLNINDGCGSTHLDA-------LQKAVREHGADLGIAF 238
Query: 283 DGDGDRNMVLGKKAFFVNPSDSLAVLAAHLDSIPYFKKTGVKGYARSMPTGAAVDRVAKA 342
DGD DR + + V+ L ++A L V ++ + ++R +
Sbjct: 239 DGDADRVLAVDANGRIVDGDQILYIIARALKESGELAGNTVVA---TVMSNLGLERALEK 295
Query: 343 NNKELFEVPTGWKYFGNLMDAGRLSLCGEESFGTG----SDHIREKDGIWAVLAWLSVVE 398
L G +Y M +L GE+S G D+ DGI + L L++++
Sbjct: 296 LGLTLIRTAVGDRYVLEEMRESGYNLGGEQS---GHIILLDYSTTGDGIVSALQVLTIMK 352
Query: 399 HTGKPVEEILKS 410
+G + E+
Sbjct: 353 KSGSTLSELAAE 364
>gnl|CDD|184620 PRK14323, glmM, phosphoglucosamine mutase; Provisional.
Length = 440
Score = 87.2 bits (216), Expect = 2e-18
Identities = 96/382 (25%), Positives = 150/382 (39%), Gaps = 67/382 (17%)
Query: 36 VAVDKIIKISGIRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSA 95
A ++ K G R V+++G D R GD+ + + GV V G+L TP VS
Sbjct: 30 QAAGEVFKRHGPRPVVLLGKDTRQSGDMLEAALAAGLTSRGVR---VEHLGVLPTPGVSY 86
Query: 96 LIRKHQVTGGIVLTASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITTQIKTYSIVP 155
L R T G+V++ASHNP D GIKF ++G PDA I + ++ + V
Sbjct: 87 LTRHLGATAGVVISASHNPY---QDNGIKFFGADGEKLPDAAELEIEALLDEVPELAEVT 143
Query: 156 DLKVDITSIGSSSYEVDGAQFQVDVIDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKL 215
IGS S D ++ +YL + P L L K+
Sbjct: 144 G-----AGIGSVS----------DFTEAERLYLDFLLS--HAPDLSGL----------KV 176
Query: 216 LINAMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPD-------FGGHHPDPNLTYAADLV 268
++ +G K+F + GA NT PD G HP+ L
Sbjct: 177 ALDCANGAAYRLAPKVF-QAAGADVFALFNT---PDGRNINRGCGSTHPE-------ALQ 225
Query: 269 QAMQAGDFDLGAAFDGDGDRNMVLGKKAFFVNPSDSLAVLAAHLDSIPYFKKTGVKGYAR 328
+ + G DLG AFDGD DR + + ++ + L + A + V G
Sbjct: 226 RFVVEGGLDLGVAFDGDADRALFVDRRGRLFHGDHMLYLNALA------RGEKAVVG--- 276
Query: 329 SMPTGAAVDRVAKANNKELFEVPTGWKYFGNLMDAGRLSLCGEESFGTGS----DHIREK 384
++ + A++ + G +Y + A L+L GE+S G DH
Sbjct: 277 TVMSNMALEVKLREAGIAFHRTAVGDRYVHEKLHAKGLTLGGEQS---GHVLFLDHAPTG 333
Query: 385 DGIWAVLAWLSVVEHTGKPVEE 406
DG+ L L+ ++ G ++
Sbjct: 334 DGVLTALLTLAAMKALGTDLDA 355
>gnl|CDD|217264 pfam02879, PGM_PMM_II, Phosphoglucomutase/phosphomannomutase,
alpha/beta/alpha domain II.
Length = 103
Score = 75.0 bits (185), Expect = 1e-16
Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 11/108 (10%)
Query: 185 EVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINAMHGVTGPYVKKIFLEELGAQPDNAV 244
+ Y+ + FD L+ + K++ + +HGV G + ++ L+ LGA+ +
Sbjct: 1 DAYIDRLASAFDLEALK--------KRGLKVVYDPLHGVGGEILPEL-LKRLGAEV-VEL 50
Query: 245 NTTPLPDFGGHHPDP-NLTYAADLVQAMQAGDFDLGAAFDGDGDRNMV 291
N P DF P+P L++ ++ DLG AFDGD DR V
Sbjct: 51 NCEPDGDFPTKAPNPEEPEALELLIELVKEVGADLGIAFDGDADRLGV 98
>gnl|CDD|184614 PRK14314, glmM, phosphoglucosamine mutase; Provisional.
Length = 450
Score = 80.8 bits (200), Expect = 3e-16
Identities = 106/386 (27%), Positives = 165/386 (42%), Gaps = 65/386 (16%)
Query: 37 AVDKIIKISGIRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSAL 96
A + + R +V+G D R G + + +I + GV L+VG L TP ++ +
Sbjct: 31 AAAYVFRNGSGRHRVVIGKDTRLSGYMFENALIAGLCSMGVDVLLVGP---LPTPGIAFI 87
Query: 97 IRKHQVTGGIVLTASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITTQIKTYSIVPD 156
R + G+V++ASHNP DN GIKF +S+G PD V I + ++PD
Sbjct: 88 TRSMRADAGVVISASHNP-YQDN--GIKFFSSDGFKLPDEVELRIEAMVLSKDFDWLLPD 144
Query: 157 LKVDITSIGSSSYEVDGAQFQVDVIDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLL 216
++ V G ++D D+ Y+ +K FPK +L KG K++
Sbjct: 145 -----------AHAV-GKAKRID--DAPGRYIVFLKAT--FPKGLTL-KG------LKIV 181
Query: 217 INAMHGVT---GPYVKKIFLEELGAQPDNAVNTTPL-----PDFGGHHPDPNLTYAADLV 268
++ +G P V EELGA+ + P G HP+ A V
Sbjct: 182 LDCANGAAYKVAPAV----FEELGAEVI-CIGVEPNGLNINAGCGSLHPE----VIAKAV 232
Query: 269 QAMQAGDFDLGAAFDGDGDRNMVLGKKAFFVNPSDSLAVLAAHLDSIPYFKKTGVKG--- 325
A DLG A DGD DR +V+ +K V+ +A+ A L K+ +
Sbjct: 233 IEHGA---DLGIALDGDADRLIVVDEKGHIVDGDQIMAICATDL-----KKRGALPKNTL 284
Query: 326 YARSMPTGAAVDRVAKANNKELFEVPTGWKYFGNLMDAGRLSLCGEES----FGTGSDHI 381
A M + ++ K ++ P G +Y M G +L GE+S F DH
Sbjct: 285 VATVM-SNMGLEVAMKELGGQVLRTPVGDRYVVEEMRRGGANLGGEQSGHLIF---LDHN 340
Query: 382 REKDGIWAVLAWLSVVEHTGKPVEEI 407
DGI + L L ++ +GKP+ E+
Sbjct: 341 TTGDGILSALQVLRIMIESGKPLSEL 366
>gnl|CDD|100096 cd05803, PGM_like4, This PGM-like (phosphoglucomutase-like) domain
is located C-terminal to a mannose-1-phosphate
guanyltransferase domain in a protein of unknown
function that is found in both prokaryotes and
eukaryotes. This domain belongs to the
alpha-D-phosphohexomutase superfamily which includes
several related enzymes that catalyze a reversible
intramolecular phosphoryl transfer on their sugar
substrates. Members of this superfamily include the
phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine
mutase (PNGM), phosphoacetylglucosamine mutase (PAGM),
the bacterial phosphomannomutase ManB, the bacterial
phosphoglucosamine mutase GlmM, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
these enzymes has four domains with a centrally located
active site formed by four loops, one from each domain.
All four domains are included in this alignment model.
Length = 445
Score = 80.0 bits (198), Expect = 5e-16
Identities = 77/321 (23%), Positives = 129/321 (40%), Gaps = 43/321 (13%)
Query: 37 AVDKIIKISGIRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSAL 96
A +VVG DGR G + +I A G V GI TP V L
Sbjct: 26 AFATWQPERTKGGKIVVGRDGRPSGPMLEKIVIGALLACGCD---VIDLGIAPTPTVQVL 82
Query: 97 IRKHQVTGGIVLTASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITTQIKTYSIVPD 156
+R+ Q +GGI++TASHNP N G+KF +G E + +
Sbjct: 83 VRQSQASGGIIITASHNP-PQWN--GLKFIGPDGEFLTPDEGEEVLSCAEA-GSAQKAGY 138
Query: 157 LKVDITSIGSSSYEVDGAQFQVDVIDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLL 216
+ +G V S + + + ++ + +IK FK+
Sbjct: 139 DQ-----LGE-------------VTFSEDAIAEHIDKVLALVDVD-VIKIRERN--FKVA 177
Query: 217 INAMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDP---NLTYAADLVQAMQA 273
+++++G G + + LE+LG + +N P F H P+P NLT L A++
Sbjct: 178 VDSVNGAGGLLIPR-LLEKLGCEVI-VLNCEPTGLF-PHTPEPLPENLT---QLCAAVKE 231
Query: 274 GDFDLGAAFDGDGDRNMVLGKKAFFVNPSDSLAVLAAHLDSIPYFKKTGVKG-YARSMPT 332
D+G A D D DR ++ + + +LA+ ++ K G KG ++ T
Sbjct: 232 SGADVGFAVDPDADRLALVDEDGRPIGEEYTLALAVDYV-----LKYGGRKGPVVVNLST 286
Query: 333 GAAVDRVAKANNKELFEVPTG 353
A++ +A+ + +F G
Sbjct: 287 SRALEDIARKHGVPVFRSAVG 307
>gnl|CDD|240294 PTZ00150, PTZ00150, phosphoglucomutase-2-like protein; Provisional.
Length = 584
Score = 76.3 bits (188), Expect = 9e-15
Identities = 103/411 (25%), Positives = 157/411 (38%), Gaps = 77/411 (18%)
Query: 52 VVGGDGRY----FGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQVTGGIV 107
V+G DGRY F ++ + + G + GQ + TP V +RK + G++
Sbjct: 93 VIGYDGRYHSRRFAEITA----SVFLSKGFKVYLFGQ--TVPTPFVPYAVRKLKCLAGVM 146
Query: 108 LTASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITTQIKTYSIVPDLKVDITSI--- 164
+TASHN P D G K SNG I+P +I++
Sbjct: 147 VTASHN---PKEDNGYKVYWSNGA--------------------QIIPPHDKNISAKILS 183
Query: 165 ----GSSSYEVDGAQFQVDVIDSV-EVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINA 219
SSS+E D + V + Y +K ++ R K++ A
Sbjct: 184 NLEPWSSSWEYLTETLVEDPLAEVSDAYFATLKSEYNPACCD--------RSKVKIVYTA 235
Query: 220 MHGVTGPYVKKIFLEELGAQPDNAV--NTTPLPDFGG-HHPDPNLTYAADLVQAMQAGD- 275
MHGV +V+K +G +V P P+F P+P A L +M+ +
Sbjct: 236 MHGVGTRFVQKAL-HTVGLPNLLSVAQQAEPDPEFPTVTFPNPEEGKGA-LKLSMETAEA 293
Query: 276 --FDLGAAFDGDGDRNMVLGKKA--FFVNPSDSLAVLAAHLDSIPYFKKTGVKGYARSMP 331
+ A D D DR V K + + + L L A Y ++ K +
Sbjct: 294 HGSTVVLANDPDADRLAVAEKLNNGWKIFTGNELGALLAWWAMKRYRRQGIDKSKCFFIC 353
Query: 332 TGAAVDRVAKANNKELF---EVPTGWKYFGN----LMDAG--RLSLCGEESFGTG-SDHI 381
T + + K KE F E TG+K+ GN L EE+ G +
Sbjct: 354 TVVSSRMLKKMAEKEGFQYDETLTGFKWIGNKAIELNAENGLTTLFAYEEAIGFMLGTRV 413
Query: 382 REKDGIWAVLAWLSV---VEHTGKPVEEILKSHWKQYG----RN-YFTRYD 424
R+KDG+ A + + GK + E L+S +KQYG N Y+ YD
Sbjct: 414 RDKDGVTAAAVVAEMALYLYERGKTLVEHLESLYKQYGYHFTNNSYYICYD 464
>gnl|CDD|184621 PRK14324, glmM, phosphoglucosamine mutase; Provisional.
Length = 446
Score = 72.4 bits (178), Expect = 1e-13
Identities = 93/340 (27%), Positives = 144/340 (42%), Gaps = 53/340 (15%)
Query: 82 VGQNGILSTPAVSALIRKHQVTGGIVLTASHNPGGPDNDFGIKFNTSNGGPAPDAVTENI 141
V Q G + TPA++ L + GI+++ASHNP D GIKF S G + + I
Sbjct: 70 VIQIGPMPTPAIAFLTEDMRCDAGIMISASHNPY---YDNGIKFFDSYGNKLDEEEEKEI 126
Query: 142 YKITTQIKTYSIVPDLKVDITSIGSSSYEVDGAQFQVDVIDSVEVYLQLMKEIFDFPKLQ 201
+I ++ + IGS+ +D DVI V+++ FPK
Sbjct: 127 EEI---FFDEELIQSSQKTGEEIGSAK-RID------DVIGRYIVHIK-----NSFPKDL 171
Query: 202 SLIKGSSGRPPFKLLINAMHGVTGPYVKKIFLEELGA-------QPDNAVNTTPLPDFGG 254
+L KG +++++ +G V ELGA +P N N + G
Sbjct: 172 TL-KG------LRIVLDTANG-AAYKVAPTVFSELGADVIVINDEP-NGFNINE--NCGA 220
Query: 255 HHPDPNLTYAADLVQAMQAGDFDLGAAFDGDGDRNMVLGKKAFFVNPSDSLAVLAAHLDS 314
HP+ NL A V+ +A D+G AFDGD DR +V+ +K V+ L VLA +L
Sbjct: 221 LHPE-NL---AQEVKRYRA---DIGFAFDGDADRLVVVDEKGEIVHGDKLLGVLAVYLKE 273
Query: 315 IPYFKKTGVKGYARSMPTGAAVDRVAKANNKELFEVPTGWKYFGNLMDAGRLSLCGEES- 373
K + A M A + + K + L G KY M ++ GE+S
Sbjct: 274 KGALKSQAI--VATVMSNLALEEYLKKHGIE-LKRCNVGDKYVLECMKENGINFGGEQSG 330
Query: 374 ---FGTGSDHIREKDGIWAVLAWLSVVEHTGKPVEEILKS 410
F SD+ + DG+ + L +++ + K E L
Sbjct: 331 HIIF---SDYAKTGDGLVSALQVSALMLESKKKASEALNP 367
>gnl|CDD|237670 PRK14316, glmM, phosphoglucosamine mutase; Provisional.
Length = 448
Score = 67.2 bits (165), Expect = 7e-12
Identities = 59/211 (27%), Positives = 86/211 (40%), Gaps = 48/211 (22%)
Query: 86 GILSTPAVSALIRKHQVTGGIVLTASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKIT 145
G++ TP V+ L R G++++ASHNP DN GIKF S+G D + I +
Sbjct: 75 GVIPTPGVAYLTRALGADAGVMISASHNP-VEDN--GIKFFGSDGFKLSDEQEDEIEALL 131
Query: 146 TQIKTYSIVPDLKVDITSIGSSSYEVDGAQFQVDVIDSVEVYLQLMKEIFDFPKLQSLIK 205
D + D S +G D + + YLQ L+S I
Sbjct: 132 ----------DAEEDTLPRPSG----EGLGTVSDYPEGLRKYLQF---------LKSTID 168
Query: 206 GS-SGRPPFKLLINAMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDP-NL-- 261
SG K+ ++ +G T ++F +LGA T + G PD N+
Sbjct: 169 EDLSG---LKVALDCANGATSSLAPRLF-ADLGAD------VTVI----GTSPDGLNIND 214
Query: 262 ----TYAADLVQAMQAGDFDLGAAFDGDGDR 288
T+ L + + DLG AFDGD DR
Sbjct: 215 GVGSTHPEALQELVVEKGADLGLAFDGDADR 245
>gnl|CDD|172795 PRK14319, glmM, phosphoglucosamine mutase; Provisional.
Length = 430
Score = 65.3 bits (159), Expect = 3e-11
Identities = 89/366 (24%), Positives = 144/366 (39%), Gaps = 66/366 (18%)
Query: 53 VGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQVTGGIVLTASH 112
+ D R GD+ ++ + G V + G+L TPA+ ALI K + G++++ASH
Sbjct: 39 IAKDTRASGDMLEAALVAGITSAGAD---VYRCGVLPTPAL-ALITKLEDAAGVMISASH 94
Query: 113 NPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITTQIKTYSIVPDLKVDITSIGSSSYEVD 172
NP P+ + G+K G PD V E I K +I S Y
Sbjct: 95 NP--PEYN-GLKV-LMRGYKLPDEVEERIEKEMNEIHY----------------SPYNEV 134
Query: 173 GAQFQVDVIDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINAMHGVTGPYVKKIF 232
G + + E Y +K+ ++ L + K++++ +G T I
Sbjct: 135 GCVIDYKL--AFEEYFNYIKQQYEGLDLSGI----------KIVVDVANGATYELNPYI- 181
Query: 233 LEELGAQPDNAVNTTP-----LPDFGGHHPDPNLTYAADLVQAMQAGDFDLGAAFDGDGD 287
LE GA+ + VN TP D G HP+ + + DGDGD
Sbjct: 182 LEYFGAKVE-VVNNTPDGFNINVDCGSTHPENAKEKIT---------NHKIAILHDGDGD 231
Query: 288 RNMVLGKKAFFVNPSDSLAVLAAHLDSIPYFKKTGVKGYARSMPTGAAVDRVAKANNKEL 347
R + L +K + + + A HL K V G ++ + ++ K N ++
Sbjct: 232 RCIFLDEKGQEFHGDKIIGLTAKHLKKEGRLKNDVVVG---TILSNMGLEVFLKNNGIKV 288
Query: 348 FEVPTGWKYFGNLMDAGRLSLCGEESFGTGSDHI--REK----DGIWAVLAWLSVVEHTG 401
G +Y M +L GE S HI +K DG+ L LSV+ +G
Sbjct: 289 VRTKVGDRYVLEEMLKLNATLGGER-----SGHIIYLDKSTTGDGLITALETLSVMVKSG 343
Query: 402 KPVEEI 407
K + ++
Sbjct: 344 KKLSDL 349
>gnl|CDD|236787 PRK10887, glmM, phosphoglucosamine mutase; Provisional.
Length = 443
Score = 62.1 bits (152), Expect = 3e-10
Identities = 67/241 (27%), Positives = 102/241 (42%), Gaps = 63/241 (26%)
Query: 86 GILSTPAVSALIRKHQVTGGIVLTASHNPGGPDNDFGIKFNTSNGGPAPDAVTENI-YKI 144
G + TPAV+ L R + GIV++ASHNP DN GIKF +++G PD V I ++
Sbjct: 74 GPMPTPAVAYLTRTLRAEAGIVISASHNP-YYDN--GIKFFSADGTKLPDEVELAIEAEL 130
Query: 145 TTQIKTYSIVPDLKVDITSIGSSSYEVDGAQFQVDVIDSVEVYLQLMKEIFDFPKLQSLI 204
+ V+ +G +S + D+ Y++ K FP SL
Sbjct: 131 DKPLTC--------VESAELGKAS----------RINDAAGRYIEFCKS--TFPNELSL- 169
Query: 205 KGSSGRPPFKLLINAMHGVT---GPYVKKIFLEELGA-------QPD----NAVNTTPLP 250
+G K++++ +G T P V ELGA +P+ N
Sbjct: 170 RG------LKIVVDCANGATYHIAPNV----FRELGAEVIAIGCEPNGLNIND------- 212
Query: 251 DFGGHHPDPNLTYAADLVQAMQAGDFDLGAAFDGDGDRNMVLGKKAFFVNPSDSLAVLAA 310
+ G P+ L A+ A DLG AFDGDGDR +++ V+ L ++A
Sbjct: 213 ECGATDPE-------ALQAAVLAEKADLGIAFDGDGDRVIMVDHLGNLVDGDQLLYIIAR 265
Query: 311 H 311
Sbjct: 266 D 266
>gnl|CDD|172796 PRK14320, glmM, phosphoglucosamine mutase; Provisional.
Length = 443
Score = 60.4 bits (146), Expect = 8e-10
Identities = 86/380 (22%), Positives = 150/380 (39%), Gaps = 61/380 (16%)
Query: 37 AVDKIIKISGIRSVLVVGGDGRYFGDVAVDKIIKISAANGV--AKLIVGQNGILSTPAVS 94
AV +I ++VG D R G +K + +G+ A + V G++ TP V+
Sbjct: 30 AVGSLINQKNYPKFVIVGQDTRSSG-----GFLKFALVSGLNAAGIDVLDLGVVPTPVVA 84
Query: 95 ALIRKHQVTGGIVLTASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITTQIKTYSIV 154
+ KH+ G V+TASHN D GIK +SNG DA+ E +
Sbjct: 85 FMTVKHRAAAGFVITASHNKF---TDNGIKLFSSNGFKLDDALEEEV------------- 128
Query: 155 PDLKVDITSIGSSSYEVDGAQFQVDVIDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFK 214
+ +D I ++ + + ID Y++ + F K
Sbjct: 129 -EDMIDGDFIYQPQFKFGSYKILANAIDE---YIESIHSRF----------AKFVNYKGK 174
Query: 215 LLINAMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDPNLTYAADLVQAMQAG 274
++++ HG + + L++ G N V+ PD + T +++ +A++
Sbjct: 175 VVVDCAHGAASHNFEAL-LDKFGI---NYVSIASNPDGLNINVGCGATCVSNIKKAVKEQ 230
Query: 275 DFDLGAAFDGDGDRNMVLGKKAFFVNPSDSLAVLAAHLDSIPYFKKTGVKGYARSMPTGA 334
DLG + DGD DR +++ + ++ L +LA + D G G + T
Sbjct: 231 KADLGISLDGDADRIIIVDENGQEIDGDGILNILAQYSDIC-----GGTNGIVGTQMTNM 285
Query: 335 AVDRVAKANNKELFEVPTGWKY-FGNLMDAGRLSLCGEES-------FGTGSDHIREKDG 386
+ + +AN G +Y +L+ G + GE S FGT DG
Sbjct: 286 SYENHYRANKIPFIRSKVGDRYVLEDLVKYG-YKIGGESSGHVINLNFGTTG------DG 338
Query: 387 IWAVLAWLSVVEHTGKPVEE 406
++ + L++ KPV E
Sbjct: 339 LFTAIQLLAIFSQADKPVSE 358
>gnl|CDD|237672 PRK14318, glmM, phosphoglucosamine mutase; Provisional.
Length = 448
Score = 56.5 bits (137), Expect = 2e-08
Identities = 39/96 (40%), Positives = 50/96 (52%), Gaps = 6/96 (6%)
Query: 46 GIRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQVTGG 105
G R V VVG D R G+ + A+ GV L VG +L TPAV+ L G
Sbjct: 42 GRRPVAVVGRDPRASGEFLEAAVSAGLASAGVDVLRVG---VLPTPAVAYLTAALDADFG 98
Query: 106 IVLTASHNPGGPDNDFGIKFNTSNGGPAPDAVTENI 141
++++ASHNP PDN GIKF + G PD V + I
Sbjct: 99 VMISASHNP-MPDN--GIKFFAAGGHKLPDDVEDRI 131
Score = 29.9 bits (68), Expect = 3.6
Identities = 44/165 (26%), Positives = 62/165 (37%), Gaps = 31/165 (18%)
Query: 253 GGHHPDPNLTYAADLVQAMQAGDFDLGAAFDGDGDRNMVLGKKAFFVNPSDSLAVLA-AH 311
G H + L A+ A DLG A DGD DR + + V+ +A+LA A
Sbjct: 219 GSTHLEQ-------LQAAVVAHGADLGLAHDGDADRCLAVDANGNVVDGDQIMAILALAM 271
Query: 312 LDSIPYFKKTGVK------GYARSMPTGAAVDRVAKANNKELFEVPTGWKYFGNLMDAGR 365
++ T V G +M + + G +Y M AG
Sbjct: 272 KEAGELASDTLVATVMSNLGLKLAM----------REAGITVVTTAVGDRYVLEEMRAGG 321
Query: 366 LSLCGEESFGTG----SDHIREKDGIWAVLAWLSVVEHTGKPVEE 406
SL GE+S G DH DGI L ++ + TGK + E
Sbjct: 322 YSLGGEQS---GHIVMPDHATTGDGILTGLRLMARMAQTGKSLAE 363
>gnl|CDD|237671 PRK14317, glmM, phosphoglucosamine mutase; Provisional.
Length = 465
Score = 54.6 bits (132), Expect = 6e-08
Identities = 65/251 (25%), Positives = 109/251 (43%), Gaps = 59/251 (23%)
Query: 52 VVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQVTGGIVLTAS 111
++G D R D+ + ++A A V G+ TPAV+ L RK + GG++++AS
Sbjct: 59 LIGQDSRNSSDMLA---MALAAGLTAAGREVWHLGLCPTPAVAYLTRKSEAIGGLMISAS 115
Query: 112 HNPGGP-DNDFGIKFNTSNGGPAPDAVTENIYKITTQIKTYSIVPDLKVDITSIGSSSYE 170
HNP P DN GIKF ++G + +I ++ D + ++ G +
Sbjct: 116 HNP--PEDN--GIKFFGADGTKLSPELQA---QIEAGLRGELSSSD---NASNWGRHYHR 165
Query: 171 VDGAQ-FQVDVIDSV--EVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINAMHGVTGPY 227
+ ++ +++S+ V LQ +K + D L G+ A+ P
Sbjct: 166 PELLDDYRDALLESLPDRVNLQGVKIVLD------LAWGA-----------AVA--CAP- 205
Query: 228 VKKIFLEELGA-------QPD-NAVNTTPLPDFGGHHPDPNLTYAADLVQAMQAGDFDLG 279
++F + LGA QPD + +N + G H +P L A+ D+G
Sbjct: 206 --EVF-KALGAEVICLHDQPDGDRINV----NCGSTHLEP-------LQAAVLEHGADMG 251
Query: 280 AAFDGDGDRNM 290
AFDGD DR +
Sbjct: 252 FAFDGDADRVL 262
>gnl|CDD|237669 PRK14315, glmM, phosphoglucosamine mutase; Provisional.
Length = 448
Score = 53.8 bits (130), Expect = 1e-07
Identities = 85/338 (25%), Positives = 138/338 (40%), Gaps = 61/338 (18%)
Query: 86 GILSTPAVSALIRKHQVTGGIVLTASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKIT 145
G + TPAV+ L R + G++++ASHNP DN GIK +G D + I +
Sbjct: 77 GPIPTPAVAMLTRSMRADLGVMISASHNPFE-DN--GIKLFGPDGFKLSDEIELEIEALL 133
Query: 146 TQIKTYSIVPDLKVDITSIGSSSYEVDGAQFQVDVIDSVEVYLQLMKEIFDFPKLQSLIK 205
+ L IG + +D A + Y++ K P+ L
Sbjct: 134 DG----DLDKRL-AAPADIGRAK-RIDDAHGR---------YIEFAKR--TLPRDLRL-- 174
Query: 206 GSSGRPPFKLLINAMHGV---TGPYVKKIFLEELGAQ-------PDNAVNTTPLPDFGGH 255
G +++++ +G P L ELGA+ P N N + G
Sbjct: 175 --DG---LRVVVDCANGAAYKVAPEA----LWELGAEVITIGVEP-NGFNINE--ECGST 222
Query: 256 HPDPNLTYAADLVQAMQAGDFDLGAAFDGDGDRNMVLGKKAFFVNPSDSLAVLAAHLDSI 315
HP+ A V+ ++A D+G A DGD DR +++ +K V+ +A++A
Sbjct: 223 HPE----ALAKKVREVRA---DIGIALDGDADRVIIVDEKGHVVDGDQLMALIAESWAED 275
Query: 316 PYFKKTGVKGYARSMPTGAAVDRVAKANNKELFEVPTGWKYFGNLMDAGRLSLCGEESFG 375
+ G+ A M + ++R L G +Y M G +L GE+S
Sbjct: 276 GRLRGGGI--VATVM-SNLGLERFLADRGLTLERTAVGDRYVVEHMREGGFNLGGEQS-- 330
Query: 376 TG----SDHIREKDGIWAVLAWLSVVEHTGKPVEEILK 409
G SD+ DG+ A L L+VV +G+P E+ +
Sbjct: 331 -GHIVLSDYATTGDGLVAALQVLAVVVRSGRPASEVCR 367
>gnl|CDD|215211 PLN02371, PLN02371, phosphoglucosamine mutase family protein.
Length = 583
Score = 53.1 bits (128), Expect = 2e-07
Identities = 80/281 (28%), Positives = 123/281 (43%), Gaps = 41/281 (14%)
Query: 43 KISGIRSVLV-VGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAV--SALIRK 99
K G + V VG D R G D + A A L V G+ +TPA+ S L +
Sbjct: 109 KADGSGELRVSVGRDPRISGPRLADAV---FAGLASAGLDVVDMGLATTPAMFMSTLTER 165
Query: 100 HQVTGGIVLTASHNPGGPDNDFGIKFNTSNGG-PAPDAVTENIYKITTQIKTYSIVPDLK 158
I++TASH P N G+KF T +GG PD ++I + + Y D
Sbjct: 166 EDYDAPIMITASHLP---YNRNGLKFFTKDGGLGKPD--IKDI--LERAARIYKEWSDEG 218
Query: 159 VDITSIGSSSYEVDGAQFQVDVIDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPP------ 212
+ +S G+SS V +D + Y + +++ IK G P
Sbjct: 219 LLKSSSGASS--------VVCRVDFMSTYAKHLRDA---------IKEGVGHPTNYETPL 261
Query: 213 --FKLLINAMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDPNLTYAADL-VQ 269
FK++++A +G G + +K+ LE LGA ++ P F H P+P A Q
Sbjct: 262 EGFKIVVDAGNGAGGFFAEKV-LEPLGADTSGSLFLEPDGMFPNHIPNPEDKAAMSATTQ 320
Query: 270 AMQAGDFDLGAAFDGDGDRNMVLGKKAFFVNPSDSLAVLAA 310
A+ A DLG FD D DR+ V+ +N + +A+++A
Sbjct: 321 AVLANKADLGIIFDTDVDRSAVVDSSGREINRNRLIALMSA 361
>gnl|CDD|184619 PRK14322, glmM, phosphoglucosamine mutase; Provisional.
Length = 429
Score = 49.2 bits (117), Expect = 3e-06
Identities = 88/376 (23%), Positives = 140/376 (37%), Gaps = 78/376 (20%)
Query: 51 LVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQVTGGIVLTA 110
++VG D R GD I + GV L+ G IL TPAV+ L R + + G+V++A
Sbjct: 40 VIVGKDTRVSGDSLEAAISAGLTSMGVDVLLCG---ILPTPAVALLTRITR-SFGVVISA 95
Query: 111 SHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYK-----------ITTQIKTYSIVPDLKV 159
SHNP P+ + GIK G PD + I + + + K++ D+ +
Sbjct: 96 SHNP--PEYN-GIKV-LKGGYKIPDEMEVEIEERIESGYFPVRSVVGRTKSFREGRDMYI 151
Query: 160 DITSIGSSSYEVDGAQFQVDVIDSVEVYLQLMKEIFDF--PKLQSLIKGSSGRPPFKLLI 217
++ G +D+ + KE+F+F K++ G LLI
Sbjct: 152 GAVLEMFRDLDLTGEMVSLDLANGATT--TTAKEVFEFLGAKVEVFNDSQDG-----LLI 204
Query: 218 NAMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDPNLTYAADLVQAMQAGDFD 277
N G T P L + M+ G
Sbjct: 205 NQGCGATHPRF--------------------------------------LAEEMKNG--K 224
Query: 278 LGAAFDGDGDRNMVLGKKAFFVNPSDSLAVLAAHLDSIPYFKKTGVKGYARSMPTGAAVD 337
+G FDGDGDR + + ++ VN + +LA L V G ++ T ++
Sbjct: 225 VGFTFDGDGDRVIAVDEERNVVNGDRIIGILAVGLKEEGRLNSDTVVG---TVMTNGGLE 281
Query: 338 RVAKANNKELFEVPTGWKYFGNLMDAGRLSLCGEESFGTGS----DHIREKDGIWAVLAW 393
K +L G KY M +L GE S G D DG+ L
Sbjct: 282 DFLKERGIKLLRTKVGDKYVLEKMLESGANLGGERS---GHIIILDRSTTGDGLITALEL 338
Query: 394 LSVVEHTGKPVEEILK 409
+ V++ +G+ + + K
Sbjct: 339 MRVLKRSGRNLSDFAK 354
>gnl|CDD|185312 PRK15414, PRK15414, phosphomannomutase CpsG; Provisional.
Length = 456
Score = 43.8 bits (103), Expect = 2e-04
Identities = 77/296 (26%), Positives = 125/296 (42%), Gaps = 54/296 (18%)
Query: 30 GRYFGDVAVDKIIKISGIRSVLVVGGDGRYFGDVAVDKIIKISAANGV--AKLIVGQNGI 87
GR +G+ K I V+GGD R + +K++ A G+ A + V G+
Sbjct: 29 GRAYGEFLKPKTI---------VLGGDVRL-----TSETLKLALAKGLQDAGVDVLDIGM 74
Query: 88 LSTPAVSALIRKHQVTGGIVLTASHNPGGPDNDF-GIKFNTSNGGP-APDAVTENIYKIT 145
T + V GGI +TASHNP D+ G+K P + D ++ ++
Sbjct: 75 SGTEEIYFATFHLGVDGGIEVTASHNP----MDYNGMKLVREGARPISGDTGLRDVQRLA 130
Query: 146 TQIKTYSIVPDLKVDITSIGSSSYEVDGAQFQVDVIDSVEVYLQLMKEIFDFPKLQSLIK 205
+ + V + K G Q+++ D+ + +F + +++L
Sbjct: 131 -EANDFPPVDETK-------------RGRYQQINLRDA------YVDHLFGYINVKNL-- 168
Query: 206 GSSGRPPFKLLINAMHGVTGPYVKKI--FLEELGAQPDN-AVNTTPLPDFGGHHPDPNLT 262
P KL+IN+ +G GP V I + LGA + V+ TP +F P+P L
Sbjct: 169 -----TPLKLVINSGNGAAGPVVDAIEARFKALGAPVELIKVHNTPDGNFPNGIPNPLLP 223
Query: 263 YA-ADLVQAMQAGDFDLGAAFDGDGDRNMVLGKKAFFVNPSDSLAVLA-AHLDSIP 316
D A+ D+G AFDGD DR + +K F+ + +LA A L+ P
Sbjct: 224 ECRDDTRNAVIKHGADMGIAFDGDFDRCFLFDEKGQFIEGYYIVGLLAEAFLEKNP 279
>gnl|CDD|172797 PRK14321, glmM, phosphoglucosamine mutase; Provisional.
Length = 449
Score = 41.0 bits (96), Expect = 0.001
Identities = 75/355 (21%), Positives = 140/355 (39%), Gaps = 89/355 (25%)
Query: 30 GRYFGDVAVDKIIKISGIRSV-------------------------LVVGGDGRYFGDVA 64
G+YFG SGIR V +VVG D R ++
Sbjct: 2 GKYFG---------TSGIREVVNEKLTPELALKVGLALGTYLGGGKVVVGKDTRTSSEML 52
Query: 65 VDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQVTGGIVLTASHNPGGPDNDFGIK 124
+ +I + GV + +G + TP I+ + G+ +TASHNP P+ + GIK
Sbjct: 53 KNALISGLLSTGVDVIDIG---LAPTPLTGFAIKLYNADAGVTITASHNP--PEYN-GIK 106
Query: 125 FNTSNGGPAPDAVTENIYKITTQIKTYSIVPDLKVDITSIGSSSYEVDGAQFQVDVIDSV 184
NG + P+++ ++ I S ++ +
Sbjct: 107 VWQRNG--------------------MAYTPEMENELERIIESGNFKRVPWNEIGTLRRA 146
Query: 185 EVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINAMHG---VTGPYVKKIFLEELGAQPD 241
+ + +K + KL++ + +++++ +G + PY+++ ELG +
Sbjct: 147 DPKEEYIKAALEMIKLEN---------SYTVVVDSGNGAGSILSPYLQR----ELGNKVI 193
Query: 242 NAVNTTPLPDFGGHHPDPN---LTYAADLVQAMQAGDFDLGAAFDGDGDRNMVLGKKAFF 298
++N+ P F +PN L+ A V+ ++A D+G A DGD DR V+ + F
Sbjct: 194 -SLNSHP-SGFFVRELEPNAKSLSMLAKTVKVLKA---DVGIAHDGDADRIGVVDDQGNF 248
Query: 299 VNPSDSLAVLAAHLDSIPYFKKTGVKGYARSMPTGAAVDRVAKANNKELFEVPTG 353
V L+++A ++ +K G ++ G A+D + E+ G
Sbjct: 249 VEYEVMLSLIAGYM-----LRKFGKGKIVTTVDAGFALDDYIRPLGGEVIRTRVG 298
>gnl|CDD|236557 PRK09542, manB, phosphomannomutase/phosphoglucomutase; Reviewed.
Length = 445
Score = 36.5 bits (85), Expect = 0.026
Identities = 41/123 (33%), Positives = 56/123 (45%), Gaps = 26/123 (21%)
Query: 200 LQSLIKGSSGRPPFKLLI---NAMHGVTGPYVKKIFLEELGAQPDNAVNTTPL-----PD 251
L+SL+ S RP K+ + N M G T P V LG P + PL
Sbjct: 153 LRSLVDLSGIRP-LKVAVDAGNGMGGHTVPAV-------LGGLP---ITLLPLYFELDGT 201
Query: 252 FGGHHPDP----NLTYAADLVQAMQAGDFDLGAAFDGDGDRNMVLGKKAFFVNPSDSLAV 307
F H +P NL DL ++ D+G AFDGD DR V+ ++ V+PS A+
Sbjct: 202 FPNHEANPLDPANLV---DLQAFVRETGADIGLAFDGDADRCFVVDERGQPVSPSAVTAL 258
Query: 308 LAA 310
+AA
Sbjct: 259 VAA 261
>gnl|CDD|215485 PLN02895, PLN02895, phosphoacetylglucosamine mutase.
Length = 562
Score = 34.6 bits (80), Expect = 0.12
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 7/46 (15%)
Query: 86 GILSTPAVSALIRKHQVTGGIVLTASHNPGGPDNDFGIKFNTSNGG 131
GIL+ A+ +L K G+++TASHNP DN G+K +GG
Sbjct: 46 GILA--ALRSL--KTGAATGLMITASHNP-VSDN--GVKIVDPSGG 84
>gnl|CDD|100097 cd05805, MPG1_transferase, GTP-mannose-1-phosphate
guanyltransferase (MPG1 transferase), also known as
GDP-mannose pyrophosphorylase, is a bifunctional enzyme
with both phosphomannose isomerase (PMI) activity and
GDP-mannose phosphorylase (GMP) activity. The protein
contains an N-terminal NTP transferase domain, an
L-beta-H domain, and a C-terminal PGM-like domain that
belongs to the alpha-D-phosphohexomutase superfamily.
This subfamily is limited to bacteria and archaea. The
alpha-D-phosphohexomutases include several related
enzymes that catalyze a reversible intramolecular
phosphoryl transfer on their sugar substrates. Members
of this group appear to lack conserved residues
necessary for metal binding and catalytic activity.
Other members of this superfamily include the
phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine
mutase (PNGM), phosphoacetylglucosamine mutase (PAGM),
the bacterial phosphomannomutase ManB, the bacterial
phosphoglucosamine mutase GlmM, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
these enzymes has four domains with a centrally located
active site formed by four loops, one from each domain.
All four domains are included in this alignment model.
Length = 441
Score = 32.6 bits (75), Expect = 0.51
Identities = 24/115 (20%), Positives = 43/115 (37%), Gaps = 23/115 (20%)
Query: 180 VIDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINAMHGVTGPYVKKIF------L 233
D VE Y++ + L++L + K++I+ +GV G + + +
Sbjct: 144 PPDFVEYYIRGL--------LRALDTSGLKKSGLKVVIDYAYGVAGIVLPGLLSRLGCDV 195
Query: 234 EELGAQPDNAVNTTPLPDFGGHHPDPNLTYAADLVQAMQAGDFDLGAAFDGDGDR 288
L A+ D T L +V+A+ A D G D +G+R
Sbjct: 196 VILNARLDEDAPRTDTERQRS------LDRLGRIVKALGA---DFGVIIDPNGER 241
>gnl|CDD|214738 smart00595, MADF, subfamily of SANT domain.
Length = 89
Score = 30.4 bits (69), Expect = 0.53
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 392 AWLSVVEHTGKPVEEILKSHWKQYGRNYFTRY 423
AW + E G VEE K WK R+ + R
Sbjct: 29 AWEEIAEELGLSVEEC-KKRWKNL-RDRYRRE 58
>gnl|CDD|218125 pfam04519, Bactofilin, Polymer-forming cytoskeletal. This is a
family of bactofilins, a functionally diverse class of
cytoskeletal, polymer-forming, proteins that is widely
conserved among bacteria. In the example species C.
crescentus, two bactofilins assemble into a
membrane-associated laminar structure that shows
cell-cycle-dependent polar localisation and acts as a
platform for the recruitment of a cell wall
biosynthetic enzyme involved in polar morphogenesis.
Bactofilins display distinct subcellular distributions
and dynamics in different bacterial species, suggesting
that they are versatile structural elements that have
adopted a range of different cellular functions.
Length = 101
Score = 29.7 bits (68), Expect = 0.98
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 8/55 (14%)
Query: 22 SVLVVGGDGRYFGDVAVDKIIKISGI-------RSVLVVGGDGRYFGDVAVDKII 69
LV+G GR G++ D++I I+G L + GR GDV +
Sbjct: 35 GTLVIGEGGRVEGEIKADEVI-INGEVEGNVTATEKLEILSTGRVEGDVKYGSLE 88
>gnl|CDD|100088 cd03086, PGM3, PGM3 (phosphoglucomutase 3), also known as PAGM
(phosphoacetylglucosamine mutase) and AGM1
(N-acetylglucosamine-phosphate mutase), is an essential
enzyme found in eukaryotes that reversibly catalyzes the
conversion of GlcNAc-6-phosphate into GlcNAc-1-phosphate
as part of the UDP-N-acetylglucosamine (UDP-GlcNAc)
biosynthetic pathway. UDP-GlcNAc is an essential
metabolite that serves as the biosynthetic precursor of
many glycoproteins and mucopolysaccharides. AGM1 is a
member of the alpha-D-phosphohexomutase superfamily,
which catalyzes the intramolecular phosphoryl transfer
of sugar substrates. The alpha-D-phosphohexomutases have
four domains with a centrally located active site formed
by four loops, one from each domain. All four domains
are included in this alignment model.
Length = 513
Score = 31.0 bits (71), Expect = 1.4
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
Query: 95 ALIRKHQVTGGIVLTASHNPGGPDNDFGIK 124
+ + G +++TASHNP DN G+K
Sbjct: 29 SKKLGGKTIG-VMITASHNP-VEDN--GVK 54
>gnl|CDD|240352 PTZ00302, PTZ00302, N-acetylglucosamine-phosphate mutase;
Provisional.
Length = 585
Score = 31.2 bits (71), Expect = 1.6
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 100 HQVTGGIVLTASHNPGGPDNDFGIKFNTSNGG 131
+ G+++TASHNP DN G+K +GG
Sbjct: 73 GNKSVGVMITASHNP-IQDN--GVKIIDPDGG 101
Score = 28.9 bits (65), Expect = 7.7
Identities = 34/145 (23%), Positives = 54/145 (37%), Gaps = 27/145 (18%)
Query: 175 QFQVDVIDSV-EVYLQLMKEIFD--FPKLQSLIKGSSGR-PPFKLLINAMHGVTGPYVKK 230
VDV++S E+Y + F + LQ + L+++ +GV G +K+
Sbjct: 204 GLGVDVVESSDELYYAYLLAAFKELYRTLQEGGPVDLTQNNSKILVVDCANGVGGYKIKR 263
Query: 231 IF--LEELGAQPDNAVNTTPLPDFGGHHPDPNLTYAADLVQAMQ----------AGDFDL 278
F L++LG P+ N AD VQ + +
Sbjct: 264 FFEALKQLGI------EIIPININCDEEELLNDKCGADYVQKTRKPPRAMKEWPGDEETR 317
Query: 279 GAAFDGDGDRNMVLGKKAFFVNPSD 303
A+FDGD DR +V FF +
Sbjct: 318 VASFDGDADR-LV----YFFPDKDG 337
>gnl|CDD|240114 cd04801, CBS_pair_M50_like, This cd contains two tandem repeats
of the cystathionine beta-synthase (CBS pair) domains
in association with the metalloprotease peptidase M50.
CBS is a small domain originally identified in
cystathionine beta-synthase and subsequently found in a
wide range of different proteins. CBS domains usually
come in tandem repeats, which associate to form a
so-called Bateman domain or a CBS pair which is
reflected in this model. The interface between the two
CBS domains forms a cleft that is a potential ligand
binding site. The CBS pair coexists with a variety of
other functional domains. It has been proposed that
the CBS domain may play a regulatory role, although its
exact function is unknown.
Length = 114
Score = 28.8 bits (65), Expect = 2.2
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 37 AVDKIIKISGIRSVLVVGGDGRYFGDVAVDKIIKISA 73
V + + S R +VV +GRY G +++ + I
Sbjct: 15 FVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPT 51
>gnl|CDD|214535 smart00139, MyTH4, Domain in Myosin and Kinesin Tails. Domain
present twice in myosin-VIIa, and also present in 3
other myosins.
Length = 152
Score = 29.3 bits (66), Expect = 2.7
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 16/64 (25%)
Query: 185 EVYLQLMKEIFDFPKLQSLIKG-------SSGRPPFKLLINAMHGVTGPYVKKIFLEELG 237
E+Y QL+K++ D P QS +G +S PP + L+ PY+ + FL
Sbjct: 64 EIYCQLIKQLTDNPSRQSEERGWQLLYLCTSLFPPSERLL--------PYLLQ-FLSRRA 114
Query: 238 AQPD 241
Sbjct: 115 DPGS 118
>gnl|CDD|184683 PRK14450, PRK14450, acylphosphatase; Provisional.
Length = 91
Score = 27.9 bits (62), Expect = 3.3
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 320 KTGVKGYARSMPTGAAVDRVAKANNKELFE 349
+ G+ GYA+++ G V+ VA+ + L E
Sbjct: 27 RLGLCGYAKNLANGNEVEVVAEGDKDSLLE 56
>gnl|CDD|220422 pfam09818, ABC_ATPase, Predicted ATPase of the ABC class. Members
of this family include various bacterial predicted ABC
class ATPases.
Length = 447
Score = 29.9 bits (68), Expect = 3.4
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 10/57 (17%)
Query: 38 VDKI---IKISGIRSVLVVGGDGRYFGDVAVDKII-----KISAANGVAKLIVGQNG 86
VD++ G+ ++LVVGG G Y DVA D +I + AK I +
Sbjct: 376 VDRVRSLYDDLGVSTILVVGGSGDYL-DVA-DTVIQMDDYRPKDVTEEAKEIAEELP 430
>gnl|CDD|100090 cd03088, ManB, ManB is a bacterial phosphomannomutase (PMM) that
catalyzes the conversion of mannose 6-phosphate to
mannose-1-phosphate in the second of three steps in the
GDP-mannose pathway, in which GDP-D-mannose is
synthesized from fructose-6-phosphate. In Mycobacterium
tuberculosis, the causative agent of tuberculosis, PMM
is involved in the biosynthesis of mannosylated
lipoglycans that participate in the association of
mycobacteria with host macrophage phagocytic receptors.
ManB belongs to the the alpha-D-phosphohexomutase
superfamily which includes several related enzymes that
catalyze a reversible intramolecular phosphoryl transfer
on their sugar substrates. Other members of this
superfamily include the phosphoglucomutases (PGM1 and
PGM2), phosphoglucosamine mutase (PNGM),
phosphoacetylglucosamine mutase (PAGM), the bacterial
phosphoglucosamine mutase GlmM, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
these enzymes has four domains with a centrally located
active site formed by four loops, one from each domain.
All four domains are included in this alignment model.
Length = 459
Score = 29.5 bits (67), Expect = 4.1
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 86 GILSTPAVSALIRKHQVTGGIVLTASHNPGGPDNDFGIKFNTSNG 130
G + TPA++ K I++T SH P + G+KF +G
Sbjct: 71 GAVPTPALALYAMKRGA-PAIMVTGSHIP---ADRNGLKFYRPDG 111
>gnl|CDD|143625 cd07758, ThTPase, Thiamine Triphosphatase. ThTPase is a soluble
cytosolic enzyme which converts thiamine triphosphate
(ThTP) to thiamine diphosphate. This catalytic activity
depends on a divalent metal cofactor, for example Mg++.
ThTPase regulates the intracellular concentration of
ThTP, maintaining it at a low concentration in vivo.
ThTP acts as a messenger in cell signaling in response
to cellular stress, and in addition, can phosphorylate
proteins in certain tissues. There is another class of
membrane-associated enzymes in animal tissues which also
convert ThTP to thiamine diphosphate, however they do
not belong to this subgroup. This subgroup belongs to
the CYTH/triphosphate tunnel metalloenzyme (TTM)-like
superfamily, whose enzymes have a unique active site
located within an eight-stranded beta barrel.
Length = 196
Score = 28.9 bits (65), Expect = 4.6
Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Query: 144 ITTQIKTYSIVPDLKVDI--TSIGSSSYEVDGAQFQVDVID-SVEVYLQLMKEIFDFPKL 200
T+ +++ + +VD+ T G S EV+ + + + V L + E+
Sbjct: 119 FVTKRESWKLDGAFRVDLDRTDFGYSVGEVE-LLVEEEDNEAEVPAALAKIDELISALME 177
Query: 201 QSLIKGSSGRPPFKL 215
+ L GRPP KL
Sbjct: 178 RYLWAFKQGRPPGKL 192
>gnl|CDD|173945 cd08186, Fe-ADH8, Iron-containing alcohol dehydrogenase. Type
III Iron-containing alcohol dehydrogenases (ADH).
Alcohol dehydrogenase catalyzes the reduction of
acetaldehyde to alcohol with NADP as cofactor. The ADH
of hyperthermophilic archaeon Thermococcus
hydrothermalis oxidizes a series of primary aliphatic
and aromatic alcohols preferentially from C2 to C8 but
is also active towards methanol and glycerol and
stereospecific for monoterpenes. It was suggested that
the type III ADHs in microorganisms are involved in
acetaldehyde detoxication rather than in alcohol
turnover.
Length = 383
Score = 28.9 bits (65), Expect = 6.0
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 8/69 (11%)
Query: 32 YFGDVAVDKI------IKISGIRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQN 85
YFG A++KI +K GI VL+V G Y A DK+ +G+ ++ N
Sbjct: 5 YFGVGAIEKIGEILKDLKSKGISKVLLVTGKSAYKKSGAWDKVEPALDEHGIEYVLY--N 62
Query: 86 GILSTPAVS 94
+ P V
Sbjct: 63 KVTPNPTVD 71
>gnl|CDD|131070 TIGR02015, BchY, chlorophyllide reductase subunit Y. This model
represents the Y subunit of the three-subunit enzyme,
(bacterio)chlorophyllide reductase. This enzyme is
responsible for the reduction of the chlorin B-ring and
is closely related to the protochlorophyllide reductase
complex which reduces the D-ring. Both of these
complexes in turn are homologous to nitrogenase [Energy
metabolism, Photosynthesis].
Length = 422
Score = 29.1 bits (65), Expect = 6.2
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
Query: 220 MHGVTGPYVKKIFLEE-----LGAQPDNAVNTTPLPDFGGHHPDPNLTYAADLVQA 270
M GV Y LE+ L +PD A+ TTPL F H P L Y +L+ A
Sbjct: 333 MLGVEVKYRA--SLEDDMEAVLEFEPDLAIGTTPLVQFAKEHGIPAL-YFTNLISA 385
>gnl|CDD|232891 TIGR00238, TIGR00238, KamA family protein. This model represents
essentially the whole of E. coli YjeK and of some of its
apparent orthologs. YodO in Bacillus subtilis, a family
member which is longer protein by an additional 100
residues, is characterized as a lysine 2,3-aminomutase
with iron, sulphide and pyridoxal 5'-phosphate groups.
The homolog MJ0634 from M. jannaschii is preceded by
nearly 200 C-terminal residues. This family shows
similarity to molybdenum cofactor biosynthesis protein
MoaA and related proteins. Note that the E. coli homolog
was expressed in E. coli and purified and found not to
display display lysine 2,3-aminomutase activity. Active
site residues are found in 100 residue extension in B.
subtilis. Name changed to KamA family protein [Energy
metabolism, Electron transport].
Length = 331
Score = 29.0 bits (65), Expect = 6.2
Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 35 DVAVDKIIKISGIRSVLVVGGDGRYFGDVAVDKIIK-ISAANGVAKLIVGQNGILSTPA 92
A+D I + I +L+ GGD D ++ ++K + + +L +G + P
Sbjct: 148 QKALDYIAEHPEIIEILISGGDPLMAKDHELEWLLKRLEEIPHLVRLRIGTRLPVVIPQ 206
>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 207
Score = 28.3 bits (64), Expect = 7.8
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 93 VSALIRKHQVTGGIVLTASHNPGG 116
+ LIR H GGIV+ A+H P G
Sbjct: 166 FAELIRAHLAQGGIVIAATHIPLG 189
>gnl|CDD|102357 PRK06395, PRK06395, phosphoribosylamine--glycine ligase;
Provisional.
Length = 435
Score = 28.7 bits (64), Expect = 8.3
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 13/99 (13%)
Query: 23 VLVVGGDGRYFGDVAVDKIIKISGIRSVLVVGGDG--------RY-FGD-VAVDKIIKIS 72
V++VG GR + A+ + IK SG V+G + +Y F D D I +
Sbjct: 5 VMLVGSGGR---EDAIARAIKRSGAILFSVIGHENPSIKKLSKKYLFYDEKDYDLIEDFA 61
Query: 73 AANGVAKLIVGQNGILSTPAVSALIRKHQVTGGIVLTAS 111
N V + VG + +L+TP V+ L+++ + A+
Sbjct: 62 LKNNVDIVFVGPDPVLATPLVNNLLKRGIKVASPTMEAA 100
>gnl|CDD|235188 PRK03987, PRK03987, translation initiation factor IF-2 subunit
alpha; Validated.
Length = 262
Score = 28.3 bits (64), Expect = 9.1
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 132 PAPDAVTENIYKITTQIKTYSIVPDLKVDITSIGSSSYEVD 172
P PD V E I K + + D++V+I +G+ Y +D
Sbjct: 185 PEPDGV-EIIKKALKAAEKANKYEDVEVEIYYVGAPRYRID 224
>gnl|CDD|221401 pfam12061, DUF3542, Protein of unknown function (DUF3542). This
family of proteins is functionally uncharacterized. This
protein is found in eukaryotes and viruses. Proteins in
this family are typically between 516 to 1283 amino
acids in length. This protein is found associated with
pfam00931.
Length = 403
Score = 28.3 bits (63), Expect = 9.5
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 139 ENIYKITTQIKTYSIVPDLKVDITSIGSSSYEVDGAQFQVDVIDSVEVYLQLMKEIFDF 197
E I K +I+ P + +G +D +F ++ ID+V L ++ +I D
Sbjct: 3 EKIQKTKQEIRAEYSFPKTSLASNKVG-----IDSPEFVMEFIDTVVQNLNVLVKINDP 56
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.137 0.406
Gapped
Lambda K H
0.267 0.0705 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 26,292,449
Number of extensions: 2651621
Number of successful extensions: 2812
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2711
Number of HSP's successfully gapped: 89
Length of query: 499
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 398
Effective length of database: 6,457,848
Effective search space: 2570223504
Effective search space used: 2570223504
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.3 bits)