RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5979
(499 letters)
>3pmg_A Alpha-D-glucose-1,6-bisphosphate; phosphoglucomutase,
phosphotransferase; HET: SEP; 2.40A {Oryctolagus
cuniculus} SCOP: c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1
PDB: 1c4g_A* 1jdy_A* 1lxt_A 1vkl_A* 1c47_A*
Length = 561
Score = 548 bits (1413), Expect = 0.0
Identities = 256/461 (55%), Positives = 331/461 (71%), Gaps = 31/461 (6%)
Query: 1 EHYTENFIQSILTALGDKLKGSVLVVGGDGRYFGDVAVDKIIKISGIRSVLVVGGDGRYF 60
+Y ENFIQSI++ + + LVVGGDGR++
Sbjct: 32 TNYAENFIQSIISTVEPA--------------------------QRQEATLVVGGDGRFY 65
Query: 61 GDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQVTGGIVLTASHNPGGPDND 120
A+ I++I+AANG+ +L++GQNGILSTPAVS +IRK + GGI+LTASHNPGGP+ D
Sbjct: 66 MKEAIQLIVRIAAANGIGRLVIGQNGILSTPAVSCIIRKIKAIGGIILTASHNPGGPNGD 125
Query: 121 FGIKFNTSNGGPAPDAVTENIYKITTQIKTYSIVPDLKVDITSIGSSSYEVDGA--QFQV 178
FGIKFN SNGGPAP+A+T+ I++I+ I+ Y+I PDLKVD+ +G ++++ F V
Sbjct: 126 FGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDLKVDLGVLGKQQFDLENKFKPFTV 185
Query: 179 DVIDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINAMHGVTGPYVKKIFLEELGA 238
+++DSVE Y +++ IFDF L+ L+ G + K+ I+AMHGV GPYVKKI EELGA
Sbjct: 186 EIVDSVEAYATMLRNIFDFNALKELLSGPNR---LKIRIDAMHGVVGPYVKKILCEELGA 242
Query: 239 QPDNAVNTTPLPDFGGHHPDPNLTYAADLVQAMQAGDFDLGAAFDGDGDRNMVLGKKAFF 298
++AVN PL DFGGHHPDPNLTYAADLV+ M++G+ D GAAFDGDGDRNM+LGK FF
Sbjct: 243 PANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKSGEHDFGAAFDGDGDRNMILGKHGFF 302
Query: 299 VNPSDSLAVLAAHLDSIPYFKKTGVKGYARSMPTGAAVDRVAKANNKELFEVPTGWKYFG 358
VNPSDS+AV+AA++ SIPYF++TGV+G+ARSMPT A+DRVA A L+E PTGWK+FG
Sbjct: 303 VNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWKFFG 362
Query: 359 NLMDAGRLSLCGEESFGTGSDHIREKDGIWAVLAWLSVVEHTGKPVEEILKSHWKQYGRN 418
NLMDA +LSLCGEESFGTGSDHIREKDG+WAVLAWLS++ + VE+ILK HW ++GRN
Sbjct: 363 NLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILATRKQSVEDILKDHWHKFGRN 422
Query: 419 YFTRYDYENCSAAPCNQMMDELEKKVSAPEFKGVTLSAEGR 459
+FTRYDYE A +MM +LE + F G SA +
Sbjct: 423 FFTRYDYEEVEAEGATKMMKDLEALMFDRSFVGKQFSANDK 463
>1kfi_A Phosphoglucomutase 1; parafusin, phosphoprotein PP63, exocytosis,
isomerase; 2.40A {Paramecium tetraurelia} SCOP: c.84.1.1
c.84.1.1 c.84.1.1 d.129.2.1 PDB: 1kfq_A
Length = 572
Score = 471 bits (1215), Expect = e-162
Identities = 217/473 (45%), Positives = 285/473 (60%), Gaps = 58/473 (12%)
Query: 1 EHYTENFIQSILTALGDKLKGSVLVVGGDGRYFGDVAVDKIIKISGIRSVLVVGGDGRYF 60
+Y ENF+QSI L ++VL VGGDGRYF
Sbjct: 36 PNYLENFVQSIFNTLRKD--------EL-----------------KPKNVLFVGGDGRYF 70
Query: 61 GDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKH-----QVTGGIVLTASHNPG 115
A+ II+++ AN ++++ VGQ G++STPA S IRK GGI+LTASHNPG
Sbjct: 71 NRQAIFSIIRLAYANDISEVHVGQAGLMSTPASSHYIRKVNEEVGNCIGGIILTASHNPG 130
Query: 116 GPD-NDFGIKFNTSNGGPAPDAVTENIYKITTQIKTYSIVP---DLKVDITSIGSSSY-- 169
G + DFGIKFN G PAP+ T+ IY TT+IK Y V + +++ IG +
Sbjct: 131 GKEHGDFGIKFNVRTGAPAPEDFTDQIYTHTTKIKEYLTVDYEFEKHINLDQIGVYKFEG 190
Query: 170 -EVDGAQFQVDVIDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINAMHGVTGPYV 228
++ + F+V V+D+V+ Y QLM+++FDF L+KG F + MHGV GPY
Sbjct: 191 TRLEKSHFEVKVVDTVQDYTQLMQKLFDFD----LLKGLFSNKDFSFRFDGMHGVAGPYA 246
Query: 229 KKIFLEELGAQPDNAVNTTPLPDFGGHHPDPNLTYAADLVQAM-------QAGDFDLGAA 281
K IF LG ++ +N P DFGG HPDPNLTYA DLV+ + GAA
Sbjct: 247 KHIFGTLLGCSKESLLNCDPSEDFGGGHPDPNLTYAHDLVELLDIHKKKDVGTVPQFGAA 306
Query: 282 FDGDGDRNMVLGKKAFFVNPSDSLAVLAAHLDSIPYFKKTGVKGYARSMPTGAAVDRVAK 341
DGD DRNM+LG++ F PSDSLAV+AA+ + K G+ G ARSMPT A+D+VA
Sbjct: 307 CDGDADRNMILGRQFFV-TPSDSLAVIAANAN---LIFKNGLLGAARSMPTSGALDKVAA 362
Query: 342 ANNKELFEVPTGWKYFGNLMDAGRLSLCGEESFGTGSDHIREKDGIWAVLAWLSVVEHTG 401
N +LFE PTGWK+FGNLMDAG ++LCGEESFGTGS+HIREKDGIWAVLAWL+++ H
Sbjct: 363 KNGIKLFETPTGWKFFGNLMDAGLINLCGEESFGTGSNHIREKDGIWAVLAWLTILAHKN 422
Query: 402 K------PVEEILKSHWKQYGRNYFTRYDYENCSAAPCNQMMDELEKKVSAPE 448
K VEEI+ +W+Q+GRNY++RYDYE +A N+MM+ L+ K E
Sbjct: 423 KNTDHFVTVEEIVTQYWQQFGRNYYSRYDYEQVDSAGANKMMEHLKTKFQYFE 475
>3na5_A Phosphoglucomutase; isomerase, metal binding; HET: BTB; 1.70A
{Salmonella enterica subsp} PDB: 3olp_A 2fuv_A*
Length = 570
Score = 447 bits (1151), Expect = e-153
Identities = 113/434 (26%), Positives = 172/434 (39%), Gaps = 44/434 (10%)
Query: 42 IKISGIRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQ 101
+GI VG D + A ++++ AANGV ++ NG TPAVS I H
Sbjct: 96 RAKNGITGPCYVGKDTHALSEPAFISVLEVLAANGVDVIVQENNGFTPTPAVSNAILVHN 155
Query: 102 VTG-----GIVLTASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITTQIKTYSIVPD 156
G GIV+T SHNP D GIK+N NGGPA VT+ + +
Sbjct: 156 KKGGPLADGIVITPSHNPPE---DGGIKYNPPNGGPADTNVTKVVEDRANALLAG----- 207
Query: 157 LKVDITSIGSSSYEVDGAQFQVDVIDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLL 216
+ + S + A V +D V+ +++ + +I D I+ + L
Sbjct: 208 ---GLQGVKRISLDAAMASGHVKAVDLVQPFVEGLADIVDMA----AIQKA----GLTLG 256
Query: 217 INAMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDPNLTYAADLVQAM----- 271
++ + G Y K+I E VN F H D + D
Sbjct: 257 VDPLGGSGIEYWKRI-AEHYKLNLT-LVNDQVDQTFRFMHLDKDGAIRMDCSSECAMAGL 314
Query: 272 --QAGDFDLGAAFDGDGDRNMVLGKKAFFVNPSDSLAVLAAHL-DSIPYFKKTGVKGYAR 328
FDL A D D DR+ ++ +NP+ LAV +L P + K +
Sbjct: 315 LALRDKFDLAFANDPDYDRHGIVTPA-GLMNPNHYLAVAINYLFQHRPLWGKDV--AVGK 371
Query: 329 SMPTGAAVDRVAKANNKELFEVPTGWKYFGNLMDAGRLSLCGEESFGT------GSDHIR 382
++ + A +DRV ++L EVP G+K+F + + G GEES G G+
Sbjct: 372 TLVSSAMIDRVVNDLGRKLVEVPVGFKWFVDGLFDGSFGFGGEESAGASFLRFDGTPWST 431
Query: 383 EKDGIWAVLAWLSVVEHTGKPVEEILKSHWKQYGRNYFTRYDYENCSAAPCNQMMDELEK 442
+KDGI L + TGK +E ++G + R SA + +
Sbjct: 432 DKDGIIMCLLAAEITAVTGKNPQEHYNELAARFGAPSYNRLQASATSAQK-AALSKLSPE 490
Query: 443 KVSAPEFKGVTLSA 456
VSA G ++A
Sbjct: 491 MVSASTLAGDPITA 504
>2z0f_A Putative phosphoglucomutase; isomerase, magnesium, metal-binding,
structural genomics; 2.52A {Thermus thermophilus}
Length = 524
Score = 392 bits (1008), Expect = e-132
Identities = 103/489 (21%), Positives = 181/489 (37%), Gaps = 67/489 (13%)
Query: 1 EHYTENFIQSILTALGDKLKGSVLVVGGDGRYFGDVAVDKIIKISGIRSVLVVGGDGRYF 60
+TE + +I A+ + G G L + D
Sbjct: 38 ATFTEAHVLAIAQAIAELRPSF----GATGP-------------------LFLAKDTHAL 74
Query: 61 GDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQ-----VTGGIVLTASHNPG 115
+ A + + AA+G+ + TP VS I +H G++LT SHNP
Sbjct: 75 SEPAWATALSVFAAHGIEVRVEADGDYTPTPLVSLAILEHNAHHEAKADGVLLTPSHNPP 134
Query: 116 GPDNDFGIKFNTSNGGPAPDAVTENIYKITTQIKTYSIVPDLKVDITSIGSSSYEVDGAQ 175
D G K+N GGPA +T I + + + ++ + A
Sbjct: 135 E---DGGFKYNPPTGGPANARITRAIEERANALLQEGLKGVKRLPL----------REAL 181
Query: 176 FQVDVIDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINAMHGVTGPYVKKIF--- 232
+ D +Y++ + E D I+ S ++ ++ + G + +++
Sbjct: 182 ARAKPFDYAGLYVEKVAEAVDLE----AIRAS----GLRIGVDPLGGASLRVWERLAESH 233
Query: 233 ---LEELGAQPDNAVNTTPLPDFGGHHPDPNLTYAADLVQAMQAGDFDLGAAFDGDGDRN 289
LE + D P G D + YA + A+ FDL D D DR+
Sbjct: 234 GLPLEVVNPTLDPTFRFMPKDHDGKIRMDCSSPYAMAGLLAL-KDRFDLAIGNDPDADRH 292
Query: 290 MVLGKKAFFVNPSDSLAVLAAHLDSIPYFKKTGVKGYARSMPTGAAVDRVAKANNKELFE 349
++ + NP+ LA HL + + V ++ T A +DRVA+A +E++E
Sbjct: 293 GIVTPRGLM-NPNHYLAAALHHLYTTRSWPGAKV---GKTAVTSALLDRVAQALGREVYE 348
Query: 350 VPTGWKYFGNLMDAGRLSLCGEESFGT------GSDHIREKDGIWAVLAWLSVVEHTGKP 403
P G+K+F + G L GEES G G +KDGI L ++ G+
Sbjct: 349 TPVGFKHFVAGLLEGWLGFAGEESAGASFLRFDGRPFSTDKDGILMGLLAAELMAKRGQA 408
Query: 404 VEEILKSHWKQYGRNYFTRYDYENCSAAPCNQMMDELEKKVSAPEFKGVTLSAEGRSGSW 463
+ + ++ ++ GR Y+ R D S ++ K+V G + +
Sbjct: 409 PDALYEALAEKLGRPYYARKDLP-VSPEAKARLARLSAKEVHPSTLAGEPVLQVLDRATG 467
Query: 464 WRQEKQGVR 472
+ G++
Sbjct: 468 NGEPLGGIK 476
>1tuo_A Putative phosphomannomutase; thermus thermophilus HB8, biosynthesis
of alginate, structural genomics; 1.70A {Thermus
thermophilus}
Length = 464
Score = 215 bits (551), Expect = 1e-64
Identities = 95/399 (23%), Positives = 151/399 (37%), Gaps = 46/399 (11%)
Query: 51 LVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQVTGGIVLTA 110
+VVG D R+ D + A G+ +++ G + TP +S +R + GG +LTA
Sbjct: 51 VVVGHDTRFLADAFARALSGHLAGMGLKVVLL--KGPVPTPLLSFAVRHLKAAGGAMLTA 108
Query: 111 SHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITTQIKTYSIVPDLKVDITSIGSSSYE 170
SHNP G+KF + GGP + I + + +
Sbjct: 109 SHNP-PQYL--GVKFKDATGGPIAQEEAKAIEAL-------------------VPEEARA 146
Query: 171 VDGAQFQVDVIDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINAMHGVTGPYVKK 230
++GA + +D E Y + +K D + G S L ++M G ++K
Sbjct: 147 LEGA---YETLDLREAYFEALKAHLDL----KALSGFS----GVLYHDSMGGAGAGFLKG 195
Query: 231 IFLEELGAQPD-NAVNTTPLPDFGGHHPDPNLTYAADLVQAM-QAGDFDLGAAFDGDGDR 288
L +G + + P P F G +P+P + + A DGD DR
Sbjct: 196 F-LRHVGLEIPVRPIREEPHPLFHGVNPEPIPKNLGVTLAVLGPETPPSFAVATDGDADR 254
Query: 289 NMVLGKKAFFVNPSDSLAVLAAHLDSIPYFKKTGVKGYARSMPTGAAVDRVAKANNKELF 348
V+ F NP L LA + F+K ++ +DR+ + +
Sbjct: 255 VGVVLPGGVFFNPHQVLTTLALYR-----FRKGHRGRAVKNFAVTWLLDRLGERLGFGVT 309
Query: 349 EVPTGWKYFGNLMDAGRLSLCGEESFGTG-SDHIREKDGIWAVLAWLSVVEHTGKPVEEI 407
P G+K+ G + GEES G G +H+ E+DGI L L V TGK + E
Sbjct: 310 TTPVGFKWIKEEFLKGDCFIGGEESGGVGYPEHLPERDGILTSLLLLESVAATGKDLAEQ 369
Query: 408 LKSHWKQYGRNYFTRYDYENCSAAPCNQMMDELEKKVSA 446
K G + YD + + E + A
Sbjct: 370 FKEVEALTGLTHA--YDRLDLPLKAPLDLTPFREPRPLA 406
>1wqa_A Phospho-sugar mutase; alpha-beta protein, unphosphorylated form,
enzyme-metal COMP isomerase; 2.00A {Pyrococcus
horikoshii}
Length = 455
Score = 112 bits (282), Expect = 5e-27
Identities = 69/329 (20%), Positives = 127/329 (38%), Gaps = 42/329 (12%)
Query: 86 GILSTPAVSALIRKHQVTGGIVLTASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKIT 145
GI TPAV + GG V+TASHNP N GIK NG + ++
Sbjct: 76 GIAPTPAVQWATKHFNADGGAVITASHNP-PEYN--GIKLLEPNGMGLKKEREAIVEEL- 131
Query: 146 TQIKTYSIVPDLKVDITSIGSSSYEVDGAQFQVDVIDSVEVYLQLMKEIFDFPKLQSLIK 205
+ + IG E D ++ Y++ +K D ++ +
Sbjct: 132 -----FFKEDFDRAKWYEIGEVRRE-----------DIIKPYIEAIKSKVDVEAIK--KR 173
Query: 206 GSSGRPPFKLLINAMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDPNLTYAA 265
++++ +G + + ELG + VN P F +P+PN
Sbjct: 174 K------PFVVVDTSNGAGSLTLPYLL-RELGCKVI-TVNAQPDGYFPARNPEPNEENLK 225
Query: 266 DLVQAMQAGDFDLGAAFDGDGDRNMVLGKKAFFVNPSDSLAVLAAHLDSIPYFKKTGVKG 325
+ ++ ++A D G A DGD DR + + + F+ + A++A + K+ G
Sbjct: 226 EFMEIVKALGADFGVAQDGDADRAVFIDENGRFIQGDKTFALVADAV-----LKEKGGGL 280
Query: 326 YARSMPTGAAVDRVAKANNKELFEVPTGWKYFGNLMDAGRLSLCGEESFGTG----SDHI 381
++ T +D +AK + ++ G + ++ GEE+ G +H+
Sbjct: 281 LVTTVATSNLLDDIAKKHGAKVMRTKVGDLIVARALYENNGTIGGEEN---GGVIFPEHV 337
Query: 382 REKDGIWAVLAWLSVVEHTGKPVEEILKS 410
+DG V + + +GK E++
Sbjct: 338 LGRDGAMTVAKVVEIFAKSGKKFSELIDE 366
>2f7l_A 455AA long hypothetical phospho-sugar mutase; phosphomannomutase,
phosphoglucomutase, isomerase; 2.80A {Sulfolobus
tokodaii}
Length = 455
Score = 108 bits (271), Expect = 1e-25
Identities = 64/389 (16%), Positives = 125/389 (32%), Gaps = 52/389 (13%)
Query: 86 GILSTPAVSALIRKHQVTGGIVLTASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKIT 145
G+ TPA+ ++ GG+V+TASHNP P N GIK +G I +
Sbjct: 72 GMAPTPALQYAVKTLGYDGGVVITASHNP-APYN--GIKVVDKDGIEIRREKENEIEDL- 127
Query: 146 TQIKTYSIVPDLKVDITSIGSSSYEVDGAQFQVDVIDSVEVYLQLMKEIFDFPKLQSLIK 205
+ ++ +S+ + D + Y+ + D K++ K
Sbjct: 128 -----FFTERFNTIEWSSLTTEVKREDRV---------ISTYVNGILSHVDIEKIKK--K 171
Query: 206 GSSGRPPFKLLINAMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDPNLTYAA 265
+K+LI+ + V + LG + +N P F P+P
Sbjct: 172 N------YKVLIDPANSVGALSTPLVA-RALGCKIY-TINGNLDPLFSARQPEPTFDSLK 223
Query: 266 DLVQAMQAGDFDLGAAFDGDGDRNMVLGKKAFFVNPSDSLAVLAAHLDSIPYFKKTGVKG 325
+ + ++ DLG A DGD DR + + + S +L+ +
Sbjct: 224 ETAEVVKTLKVDLGVAHDGDADRAIFIDSEGRVQWGDRSGTLLSYWASVKNPKAIKKI-- 281
Query: 326 YARSMPTGAAVDRVAKANNKELFEVPTGWKYFGNLMDAGRLSLCGEESFGTG----SDHI 381
+ + V+ N ++ G + + EE+ G H
Sbjct: 282 VTAVS-SSSLVEEYLSKYNIQVDWTKVGSVDIAHKVADENALAGFEEN---GGFMYPPHQ 337
Query: 382 REKDGIWAVLAWLSVVEHTGKPVEEILKSHWKQYGRNYFTRY-----DYENCSAAPCNQM 436
+DG + L ++ + E+ +Y + ++
Sbjct: 338 YVRDGAMSFALMLELLANENVSSAELFDR---------LPKYYLVKTKVDLKPGLMVEEI 388
Query: 437 MDELEKKVSAPEFKGVTLSAEGRSGSWWR 465
++ + S K +T+ G +
Sbjct: 389 YKKILEVYSTSSVKAITIDGVKIIGKDFW 417
>1p5d_X PMM, phosphomannomutase; alpha/beta protein, phosphohexomutase,
phosphoserine, enzyme complex, enzyme-metal complex,
isomerase; HET: SEP G1P; 1.60A {Pseudomonas aeruginosa}
SCOP: c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1 PDB: 1k35_A*
1p5g_X* 1pcj_X* 1pcm_X* 1k2y_X* 2h5a_X* 2h4l_X* 2fkf_A*
3rsm_A 3bkq_X* 3c04_A* 2fkm_X*
Length = 463
Score = 97.7 bits (244), Expect = 5e-22
Identities = 71/287 (24%), Positives = 113/287 (39%), Gaps = 55/287 (19%)
Query: 30 GRYFGDVAVDKIIKISGIRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILS 89
GR G ++ + G V VG DGR G V ++I+ G V G++
Sbjct: 36 GRAIGSESLAR-----GEPCV-AVGRDGRLSGPELVKQLIQGLVDCGCQ---VSDVGMVP 86
Query: 90 TPAVSALIRKHQVTGGIVLTASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITTQIK 149
TP + + G++LT SHNP N G K + A + I + +I+
Sbjct: 87 TPVLYYAANVLEGKSGVMLTGSHNPPD-YN--GFKIVVAGETLANEQ----IQALRERIE 139
Query: 150 TYSIVPDLKVDITSIGSSSYEVDGAQFQVDVIDSVEVYLQLMKEIFDFPKLQSLIKGSSG 209
+ G+ QVD++ Y + +++ K
Sbjct: 140 KNDLASG---------------VGSVEQVDILPR---YFKQIRDDIAMAK---------- 171
Query: 210 RPPFKLLINAMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDP----NLTYAA 265
P K++++ +GV G ++ E LG + +F HHPDP NL
Sbjct: 172 --PMKVVVDCGNGVAGVIAPQLI-EALGCSVI-PLYCEVDGNFPNHHPDPGKPENL---K 224
Query: 266 DLVQAMQAGDFDLGAAFDGDGDRNMVLGKKAFFVNPSDSLAVLAAHL 312
DL+ ++A + DLG AFDGDGDR V+ + P L + A +
Sbjct: 225 DLIAKVKAENADLGLAFDGDGDRVGVVTNTGTIIYPDRLLMLFAKDV 271
>3uw2_A Phosphoglucomutase/phosphomannomutase family PROT; structural
genomics, seattle structural genomics center for
infectious disease; 1.95A {Burkholderia thailandensis}
Length = 485
Score = 96.2 bits (240), Expect = 2e-21
Identities = 78/295 (26%), Positives = 115/295 (38%), Gaps = 63/295 (21%)
Query: 30 GRYFGDVAVDKIIKISGIRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILS 89
GR FG + G +V VV DGR G V + A GV V G++
Sbjct: 50 GRAFGSEVRAQ-----GGDAV-VVARDGRLSGPELVGALADGLRAAGVD---VVDVGMVP 100
Query: 90 TPAV--------SALIRKHQVTGGIVLTASHNPGGPDNDFGIKFNTSNGGPAPDAVTENI 141
TP + + +V IV+T SHNP N G K G A + I
Sbjct: 101 TPVGYFAASVPLALSGGERRVDSCIVVTGSHNPPD-YN--GFKM--VLRGAAI--YGDQI 153
Query: 142 YKITTQIKTYSIVPDLKVDITSIGSSSYEVDGAQFQVDVIDSVEVYLQLMKEIFDFPKLQ 201
+ +I G+ Q DV D Y++ + +
Sbjct: 154 QGLYKRIVDARFETG---------------SGSYEQYDVADQ---YVERIVGDIKLTR-- 193
Query: 202 SLIKGSSGRPPFKLLINAMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDP-- 259
P KL+++A +GV GP ++F + LG + + T +F HHPDP
Sbjct: 194 ----------PLKLVVDAGNGVAGPLATRLF-KALGCELV-ELFTDIDGNFPNHHPDPAH 241
Query: 260 --NLTYAADLVQAMQAGDFDLGAAFDGDGDRNMVLGKKAFFVNPSDSLAVLAAHL 312
NL D++ ++A D ++G AFDGDGDR V+ K + P L + A +
Sbjct: 242 PENL---QDVIAKLKATDAEIGFAFDGDGDRLGVVTKDGQIIYPDRQLMLFAEEV 293
>3i3w_A Phosphoglucosamine mutase; csgid, IDP02164, isomerase, magne
metal-binding, phosphoprotein, structural genomics; HET:
SEP; 2.30A {Francisella tularensis subsp}
Length = 443
Score = 77.5 bits (192), Expect = 1e-15
Identities = 72/350 (20%), Positives = 123/350 (35%), Gaps = 79/350 (22%)
Query: 86 GILSTPAVSALIRKHQVTGGIVLTASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKIT 145
G++ TP V+ + KH+ G V+TASHN DN GIK +SNG DA+ E + +
Sbjct: 76 GVVPTPVVAFMTVKHRAAAGFVITASHNK-FTDN--GIKLFSSNGFKLDDALEEEVEDMI 132
Query: 146 TQIKTYSIVPDLKVDITSIGSSSYEVDGAQFQVDVIDSVEVYLQLMKEIFDFPKLQSLIK 205
+ GS + ++++ Y++ + F K + K
Sbjct: 133 DG-------DFIYQPQFKFGSYK----------ILANAIDEYIESIYSR--FAKFVNY-K 172
Query: 206 GSSGRPPFKLLINAMHGVT---GPYVKKIFLEELGA-------QPD----NAVNTTPLPD 251
G K++++ HG + L++ G PD N
Sbjct: 173 G-------KVVVDCAHGAASHNFEAL----LDKFGINYVSIASNPDGLNINV-------G 214
Query: 252 FGGHHPDPNLTYAADLVQAMQAGDFDLGAAFDGDGDRNMVLGKKAFFVNPSDSLAVLAAH 311
G V+ +A DLG + DGD DR +++ + ++ L +LA +
Sbjct: 215 CGATCVSN----IKKAVKEQKA---DLGISLDGDADRIIIVDENGQEIDGDGILNILAQY 267
Query: 312 LDSIPYFKKTGVKG--YARSMPTGAAVDRVAKANNKELFEVPTGWKYFGNLMDAGRLSLC 369
G M T + + +AN G +Y + +
Sbjct: 268 S------DICGGTNGIVGTQM-TNMSYENHYRANKIPFIRSKVGDRYVLEDLVKYGYKIG 320
Query: 370 GEESFGTG----SDHIREKDGIWAVLAWLSVVEHTGKPVEEILKSHWKQY 415
GE S G + DG++ + L++ KPV E K +
Sbjct: 321 GESS---GHVINLNFGTTGDGLFTAIQLLAIFSQADKPVSE-FKLQGELM 366
>3pdk_A Phosphoglucosamine mutase; 4-domain architecture, mixed A/B fold,
phosphohexomutase; 2.70A {Bacillus anthracis}
Length = 469
Score = 77.5 bits (192), Expect = 2e-15
Identities = 83/354 (23%), Positives = 140/354 (39%), Gaps = 83/354 (23%)
Query: 86 GILSTPAVSALIRKHQVTGGIVLTASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKIT 145
G++STP V+ L + G++++ASHNP DN GIKF S+G D I +
Sbjct: 96 GVISTPGVAYLTKALDAQAGVMISASHNP-VQDN--GIKFFGSDGFKLTDEQEAEIEALL 152
Query: 146 TQIKTYSIVPDLKVDITSIGSSSYEVDGAQFQVDVIDSVEVYLQLMKEIFDFPKLQSLIK 205
+ P T++G S D + + YLQ +K+ + +
Sbjct: 153 DKEVDELPRPTG----TNLGQVS----------DYFEGGQKYLQYIKQTVE----EDF-- 192
Query: 206 GSSGRPPFKLLINAMHGVTGPYVKKIFLEELGA-------QPD----NAVNTTPLPDFGG 254
SG + ++ HG T +F +L A P+ N G
Sbjct: 193 --SG---LHIALDCAHGATSSLAPYLF-ADLEADISTMGTSPNGMNIND-------GVGS 239
Query: 255 HHPDPNLTYAADLVQAMQAGDFDLGAAFDGDGDRNMVLGKKAFFVNPSDSLAVLAAHLDS 314
HP+ L + ++ D+G AFDGDGDR + + +K V+ + + A ++
Sbjct: 240 THPEV-------LAELVKEKGADIGLAFDGDGDRLIAVDEKGNIVDGDQIMFICAKYM-- 290
Query: 315 IPYFKKTGVKGYARSMPTGAAV---------DRVAKANNKELFEVPTGWKYFGNLMDAGR 365
K+TG + V + +AN + G +Y M G
Sbjct: 291 ----KETG------QLKHNTVVSTVMSNLGFYKALEANGITSDKTAVGDRYVMEEMKRGG 340
Query: 366 LSLCGEESFGTG----SDHIREKDGIWAVLAWLSVVEHTGKPVEEILKSHWKQY 415
+L GE+S G D+I DG+ + L +++++ T KP+ E L ++
Sbjct: 341 YNLGGEQS---GHIILLDYITTGDGMLSALQLVNIMKMTKKPLSE-LAGEMTKF 390
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 49.7 bits (118), Expect = 2e-06
Identities = 70/371 (18%), Positives = 105/371 (28%), Gaps = 146/371 (39%)
Query: 204 IKGSSGRPPFKLLINAMHG-------V-TGPYV-----KKIFLEELGAQPDN-AVNTTP- 248
+ S RP L ++ HG V T + ++ F + L + A + P
Sbjct: 1 MDAYSTRP---LTLS--HGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPT 55
Query: 249 -----LPDFGGHHPDPNLTYAADLVQAMQAGDFD--LGAAFDGDGDRNMVLGKKAF---F 298
+ F L Y + LV+ + G FD L F +
Sbjct: 56 TPAELVGKF--------LGYVSSLVEPSKVGQFDQVLNLCLT------------EFENCY 95
Query: 299 VNPSD--SLAV-LAAHLDSIPYFKKTGVKGY--ARSM-------PTGAAVDRVAKANNKE 346
+ +D +LA L D+ K +K Y AR M + +A+ R N +
Sbjct: 96 LEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQ 155
Query: 347 LFEVPTG----WKYFGNLMD----------------AGRLSLCGEES------FGTGSDH 380
L + G YF L D A LS + F G +
Sbjct: 156 LVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN- 214
Query: 381 IREKDGIWAVLAWLSVVEHTGKPVEEILKSH---WKQYGRNYFTRYDYENCSAAPCNQM- 436
+L WL +T P ++ L S G Y +
Sbjct: 215 ---------ILEWLENPSNT--PDKDYLLSIPISCPLIGVIQLAHY------VVTAKLLG 257
Query: 437 --MDELEKKVSAPEFKGVTLSAEG--------RSGSW---------------WRQEKQGV 471
EL KG T ++G + SW + GV
Sbjct: 258 FTPGEL-----RSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFF----IGV 308
Query: 472 RS--AISQTGL 480
R A T L
Sbjct: 309 RCYEAYPNTSL 319
Score = 36.2 bits (83), Expect = 0.032
Identities = 34/223 (15%), Positives = 67/223 (30%), Gaps = 65/223 (29%)
Query: 174 AQF--QVDVIDSVEVYLQLMKEIFD--FPKLQSLIKGSSGRPPFKLLINAMHGVTGPYVK 229
A F Q + + Y + +++++ + LIK S+ LI + +
Sbjct: 158 AIFGGQ----GNTDDYFEELRDLYQTYHVLVGDLIKFSAET--LSELIRTTLDAEKVFTQ 211
Query: 230 KI----FLEELGAQPDNA-VNTTP--LPDFG--------------GHHPD---PNL---- 261
+ +LE PD + + P P G G P L
Sbjct: 212 GLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGAT 271
Query: 262 TYAADLVQAM---QAGDFDLGAAFDGDGDRNMVLGKKAFFVN-------PSDSLAVLAAH 311
++ LV A+ + ++ +F + + + FF+ P+ SL +
Sbjct: 272 GHSQGLVTAVAIAETDSWE---SFFVSVRKAITV---LFFIGVRCYEAYPNTSLP-PSIL 324
Query: 312 LDSIPYFKKT-----GVKGYARSMPTGAAVDRVAKANNKELFE 349
DS+ + + + V N L
Sbjct: 325 EDSLENNEGVPSPMLSISNLTQ-----EQVQDYVNKTNSHLPA 362
Score = 34.3 bits (78), Expect = 0.12
Identities = 62/297 (20%), Positives = 105/297 (35%), Gaps = 92/297 (30%)
Query: 5 ENFIQSILTALGDKLKGSVLV-VGGDG-RYFGDVAVD-KIIKIS-----GIRS-VLVVGG 55
E+F S+ A+ +VL +G + + ++ I++ S G+ S +L +
Sbjct: 290 ESFFVSVRKAI------TVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISN 343
Query: 56 DGRYFGDVAVDKI---------IKISAANGVAKLIVGQNGILSTPAVS--AL---IRKHQ 101
+ V+K ++IS NG +N ++S P S L +RK +
Sbjct: 344 LTQEQVQDYVNKTNSHLPAGKQVEISLVNG------AKNLVVSGPPQSLYGLNLTLRKAK 397
Query: 102 VTGGIVLTASHNPGG-----PDNDF---GIKFNTSNGGPAPDAVTENIYKITTQIKTYSI 153
G L S P N F F++ PA D + +++ K
Sbjct: 398 APSG--LDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFN---- 451
Query: 154 VPDLKVDITSIGSSSYEV-DGAQFQ----------VDVIDSVEVYLQLMKE-----IFDF 197
D+++ + Y+ DG+ + VD I + V + + I DF
Sbjct: 452 AKDIQIPV-------YDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDF 504
Query: 198 -PKLQSLIKGSSGRPPFKLLINAMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFG 253
P G+SG L G TG V+ I L PD+ D+G
Sbjct: 505 GP------GGASGLG--VLTHRNKDG-TG--VRVIVAGTLDINPDD--------DYG 542
Score = 31.2 bits (70), Expect = 1.1
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 17/84 (20%)
Query: 54 GGDGRYF-GDVA---VDKIIKI-----SAANGVAKLIV--GQNGILSTPAVSALIRKHQV 102
G D R G ++ VD II++ + A I+ G G + L
Sbjct: 465 GSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGG---ASGLGVLT-HRNK 520
Query: 103 TG-GI-VLTASHNPGGPDNDFGIK 124
G G+ V+ A PD+D+G K
Sbjct: 521 DGTGVRVIVAGTLDINPDDDYGFK 544
Score = 28.5 bits (63), Expect = 7.3
Identities = 7/56 (12%), Positives = 19/56 (33%), Gaps = 15/56 (26%)
Query: 5 ENFIQSILTALGDKL-------KGSVLVVGGDGRYFGDVAVD---KIIKISGIRSV 50
+ ++ + G + + V GD R A+D ++ ++ +
Sbjct: 1827 QYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLR-----ALDTVTNVLNFIKLQKI 1877
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.5 bits (117), Expect = 2e-06
Identities = 42/274 (15%), Positives = 80/274 (29%), Gaps = 50/274 (18%)
Query: 170 EVDGAQFQVDVIDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINAMHGVTGPYVK 229
+ + + Q D + V+ + FD +Q + K + +I + V+G
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL-- 65
Query: 230 KIFLEELGAQPDNAVNTTPLPDFGGHHPDPNLTYAADLVQAMQAGDFDLGAAFDGDGDR- 288
++F L ++ + V F N + ++ Q + + DR
Sbjct: 66 RLF-WTLLSKQEEMVQ-----KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119
Query: 289 ---NMVLGKKAFFVNPSDSLAVLAAHL---DSIPYFKKTGVKGYARSMPTGAAV--DRVA 340
N V K + V+ L L GV G ++ +V
Sbjct: 120 YNDNQVFAK--YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ 177
Query: 341 KANNKELFEVPTGWKYFGNLMDAGRL-----SLCGEESFGTGSDHIREKDGIWAVLAWLS 395
+ ++F W N + L + + + W S
Sbjct: 178 CKMDFKIF-----WLNLKNCNSPETVLEMLQKLL----------YQIDPN-------WTS 215
Query: 396 VVEHTGKPVEEILKSHW-KQYGRNYFTRYDYENC 428
+H+ L+ H + R YENC
Sbjct: 216 RSDHSSNI---KLRIHSIQAELRRLLKSKPYENC 246
>2dka_A Phosphoacetylglucosamine mutase; isomerase; 1.93A {Candida
albicans} PDB: 2dkc_A* 2dkd_A*
Length = 544
Score = 42.3 bits (99), Expect = 3e-04
Identities = 34/206 (16%), Positives = 71/206 (34%), Gaps = 44/206 (21%)
Query: 195 FDFPKLQSLIKGSSGRPPFKLLINAMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGG 254
F ++ ++ + ++ + I+A +GV P ++++ E+ + G
Sbjct: 201 KSFQEIYTICESNN--EKIDITIDAANGVGAPKIQELL-EKYLHK------EISFTVVNG 251
Query: 255 HHPDPNL-------TY---AADLVQAMQAGDFDLGAAFDGDGDRNMVLGKKAFFVNPSDS 304
+ PNL Y L + ++ + L A+FDGD DR + + +D+
Sbjct: 252 DYKQPNLLNFDCGADYVKTNQKLPKNVKPVNNKLYASFDGDADRLI------CYYQNNDN 305
Query: 305 ----------LAVLAAHLDSIPYFKKT-------GVKGYARSMPTGAAVDRVAKANNKEL 347
+ A L + GV A G++ V +
Sbjct: 306 KFKLLDGDKLSTLFALFLQQLFKQIDPTKISLNIGVVQTA--YANGSSTKYVEDVLKIPV 363
Query: 348 FEVPTGWKYFGNLMDAGRLSLCGEES 373
PTG K+ + + + + E +
Sbjct: 364 RCTPTGVKHLHHEAENFDIGVYFEAN 389
Score = 28.4 bits (63), Expect = 6.7
Identities = 15/109 (13%), Positives = 25/109 (22%), Gaps = 13/109 (11%)
Query: 38 VDKIIKISGIRSVLVVGGDGRYFGDVAVDKIIK-ISAANGVAKLIVGQNGILSTPAVSAL 96
V + I + +V+ D R I + G + +TP + +
Sbjct: 122 VSDLKIDLSIPANVVIARDSRESSPALSMATIDGFQSVPNTKYQDFG---LFTTPELHYV 178
Query: 97 IRKHQVTGGIVLTASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKIT 145
R P D + N KI
Sbjct: 179 TRTLND------PDFGK---PTEDGYYSKLAKSFQEIYTICESNNEKID 218
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.098
Identities = 6/28 (21%), Positives = 12/28 (42%), Gaps = 6/28 (21%)
Query: 139 ENIYKITTQIKTYSIVPD----LKVDIT 162
+ + K+ +K Y+ D L + T
Sbjct: 20 QALKKLQASLKLYA--DDSAPALAIKAT 45
>3c9g_A UPF0200/UPF0201 protein AF_1395; uncharacterized UPF0201 protein
AF_135, structural genomics, PSI-II, dimer; 2.30A
{Archaeoglobus fulgidus dsm 4304}
Length = 142
Score = 29.5 bits (66), Expect = 1.1
Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 4/48 (8%)
Query: 363 AGRLSLCGEESFGTGSDHIR---EKDGIWAVLAWLSVVEHTGKPVEEI 407
R++ C E + + L +++ G+PV+EI
Sbjct: 93 VSRINFCDENAVL-SPIKVTFRLNNIPFSRFLDYIAPETKDGRPVKEI 139
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin
biosynthesis, NAD, oxidoreducta porphyrin biosynthesis;
2.30A {Bacillus megaterium}
Length = 223
Score = 30.0 bits (68), Expect = 1.4
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 16/65 (24%)
Query: 42 IKISGIRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILS---TPAVSALIR 98
+ + G RSVLVVGG G +A +I A + V ++ + ++
Sbjct: 27 LDLKG-RSVLVVGG-----GTIATRRIKGFLQEG--AAITV-----VAPTVSAEINEWEA 73
Query: 99 KHQVT 103
K Q+
Sbjct: 74 KGQLR 78
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit,
CAMP-dependent protein kinase catalytic subunit A;
isoform diversity; HET: TPO SEP ATP; 3.70A {Homo
sapiens}
Length = 381
Score = 30.1 bits (67), Expect = 1.6
Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 8/69 (11%)
Query: 4 TENFIQSILTALGDKL--KGSVLVVGGD-GRYF-----GDVAVDKIIKISGIRSVLVVGG 55
+ ++ AL G +VV G+ G F G +V + + + G
Sbjct: 260 EKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEYVEVGRLG 319
Query: 56 DGRYFGDVA 64
YFG++A
Sbjct: 320 PSDYFGEIA 328
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer,
oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces
cerevisiae} SCOP: c.2.1.11 e.37.1.1
Length = 274
Score = 29.6 bits (66), Expect = 2.0
Identities = 8/41 (19%), Positives = 20/41 (48%), Gaps = 8/41 (19%)
Query: 42 IKISGIRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIV 82
++ + +L++GG G+V + ++ K+ KL +
Sbjct: 9 HQLKD-KRILLIGG-----GEVGLTRLYKLMPTG--CKLTL 41
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide
monophosphate, CNMP, CNMP-binding, structural genomics;
NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Length = 137
Score = 27.8 bits (62), Expect = 4.1
Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 12/69 (17%)
Query: 9 QSILTALGDKLK------GSVLVVGGD-GR--YF---GDVAVDKIIKISGIRSVLVVGGD 56
+ +L A+ ++LK S LV GD F G + + +
Sbjct: 19 ERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKE 78
Query: 57 GRYFGDVAV 65
G + GD +
Sbjct: 79 GDFCGDELL 87
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic
nucleotide-gated channel 2; CNBD, C-linker, pacemaker,
HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A
{Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A*
3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Length = 202
Score = 28.1 bits (63), Expect = 5.1
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 18/69 (26%)
Query: 9 QSILTALGDKLK------GSVLVVGGD-GR--YF---GDVAVDKIIKISGIRSVLVVGGD 56
+ +TA+ KLK G ++ G G+ YF G V+V + L D
Sbjct: 85 PNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSV---LTKGNKEMKL---SD 138
Query: 57 GRYFGDVAV 65
G YFG++ +
Sbjct: 139 GSYFGEICL 147
>3hr6_A SPAA, putative surface-anchored fimbrial subunit; multiple IG-like
domains, cell WALL, peptidoglycan-anchor, structural
protein; 1.60A {Corynebacterium diphtheriae} PDB:
3htl_X*
Length = 436
Score = 28.6 bits (62), Expect = 5.3
Identities = 11/78 (14%), Positives = 25/78 (32%)
Query: 101 QVTGGIVLTASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKITTQIKTYSIVPDLKVD 160
V +T G DN + + P+ + + + S + ++
Sbjct: 253 VVEFEAPVTKQPENGQLDNQAWVLPSNPTAQWDPEESGDAALRGMPSSRVSSKFGQITIE 312
Query: 161 ITSIGSSSYEVDGAQFQV 178
+ G++ A FQ+
Sbjct: 313 KSFDGNTPGADRTATFQL 330
>3tc8_A Leucine aminopeptidase; phosphorylase/hydrolase-like, structural
genomics, joint CEN structural genomics, JCSG; 1.06A
{Parabacteroides distasonis}
Length = 309
Score = 28.1 bits (62), Expect = 6.7
Identities = 35/250 (14%), Positives = 54/250 (21%), Gaps = 48/250 (19%)
Query: 251 DFGGHHPD-PNLTYAAD-LVQAMQAGDFDLGAAFDGDGDRNMVLGKKAFFVNPSDSLA-- 306
FG P+ D L ++ F + G K N S
Sbjct: 36 AFGPRVPNTAAHKACGDYLASELK--RFGAKVYQQ-EAILTAYDGTKLEARNIIGSFDPE 92
Query: 307 -----VLAAHLDSIPYFKKTGVKGYARSMPTGAAVDRVAKANNKELFEVPTGWKYFGNLM 361
+L AH DS PY R+ GA L E+ +
Sbjct: 93 NSKRVLLFAHWDSRPYSDHDPDPSKHRTPLDGADDGGSGVG---ALLEIARQIGQKAPGI 149
Query: 362 DAGRLSLCGEESFGTGSDHIREKDGIWAVLAWLSVVEHTGKPVEEILKSHWKQYGRNYFT 421
+ E+ G ++
Sbjct: 150 GIDIIFFDAEDYGTPEFV--------------------------TDYTPDSWCLGTQFWA 183
Query: 422 RYDYENCSAAPCNQMMDELEKKVSAPEFKGVTLSAEGRSGSWWRQEKQGVRSAISQTGLV 481
+ + A ++D + K T E +S + V SA G
Sbjct: 184 KNPHVPNYTAEYGILLDMVGG-------KNATFFKEQQSLRAAAPIVEMVWSAARDLGYG 236
Query: 482 HIQIIRNRQF 491
I
Sbjct: 237 KYFINAAGGA 246
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic
nucleotide binding domain, C-linker, CAM SPHCN1, HCN;
HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Length = 198
Score = 27.6 bits (62), Expect = 7.9
Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 17/69 (24%)
Query: 9 QSILTALGDKLK------GSVLVVGGD-GR--YF---GDVAVDKIIKISGIRSVLVVGGD 56
+ +T + L+ ++ G G +F G V + I + D
Sbjct: 84 SNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDI-----IMSDGVIATSLSD 138
Query: 57 GRYFGDVAV 65
G YFG++ +
Sbjct: 139 GSYFGEICL 147
>3gux_A Putative Zn-dependent exopeptidase; aminopeptidase,
phosphorylase/hydrolase-like fold, structura genomics;
1.80A {Bacteroides vulgatus atcc 8482}
Length = 314
Score = 27.8 bits (61), Expect = 8.5
Identities = 17/95 (17%), Positives = 24/95 (25%), Gaps = 7/95 (7%)
Query: 249 LPDFGGHHPD-PNLTYAAD-LVQAMQAGDFDL----GAAFDGDGDRNMVLGKKAFFVNPS 302
DFG P+ + L ++ + DG + S
Sbjct: 36 QADFGPRVPNTQAHKECGEYLAGQLEKFGAKVYNQYADLIAYDGTILKSRNIIGAYKPES 95
Query: 303 DSLAVLAAHLDSIPYFKKTGVKGYARSMPTGAAVD 337
+L AH DS PY P D
Sbjct: 96 KKRILLCAHWDSRPYADN-DPDPKNHHTPILGVND 129
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains,
cyclic nucleotide protein transferase, PKG; HET: CMP;
2.50A {Bos taurus}
Length = 299
Score = 27.6 bits (61), Expect = 8.6
Identities = 15/72 (20%), Positives = 25/72 (34%), Gaps = 8/72 (11%)
Query: 1 EHYTENFIQSILTALGDKL--KGSVLVVGGD-GRYF-----GDVAVDKIIKISGIRSVLV 52
+ E + + L + G ++ G G F G V V + + L
Sbjct: 166 QSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDPVFLR 225
Query: 53 VGGDGRYFGDVA 64
G G +FG+ A
Sbjct: 226 TLGKGDWFGEKA 237
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.137 0.406
Gapped
Lambda K H
0.267 0.0520 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,114,675
Number of extensions: 524107
Number of successful extensions: 1456
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1397
Number of HSP's successfully gapped: 52
Length of query: 499
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 401
Effective length of database: 3,965,535
Effective search space: 1590179535
Effective search space used: 1590179535
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.0 bits)