RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5979
(499 letters)
>d1kfia1 c.84.1.1 (A:3-205) Exocytosis-sensitive phosphoprotein,
pp63/parafusin {Paramecium tetraurelia [TaxId: 5888]}
Length = 203
Score = 134 bits (338), Expect = 2e-37
Identities = 73/195 (37%), Positives = 103/195 (52%), Gaps = 37/195 (18%)
Query: 1 EHYTENFIQSILTALGDKLKGSVLVVGGDGRYFGDVAVDKIIKISGIRSVLVVGGDGRYF 60
+Y ENF+QSI L ++VL VGGDGRYF
Sbjct: 34 PNYLENFVQSIFNTLRKDELK-------------------------PKNVLFVGGDGRYF 68
Query: 61 GDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQV-----TGGIVLTASHNPG 115
A+ II+++ AN ++++ VGQ G++STPA S IRK GGI+LTASHNPG
Sbjct: 69 NRQAIFSIIRLAYANDISEVHVGQAGLMSTPASSHYIRKVNEEVGNCIGGIILTASHNPG 128
Query: 116 GPD-NDFGIKFNTSNGGPAPDAVTENIYKITTQIKTYSIVP---DLKVDITSIGSSSY-- 169
G + DFGIKFN G PAP+ T+ IY TT+IK Y V + +++ IG +
Sbjct: 129 GKEHGDFGIKFNVRTGAPAPEDFTDQIYTHTTKIKEYLTVDYEFEKHINLDQIGVYKFEG 188
Query: 170 -EVDGAQFQVDVIDS 183
++ + F+V V+D+
Sbjct: 189 TRLEKSHFEVKVVDT 203
>d3pmga1 c.84.1.1 (A:1-190) Phosphoglucomutase {Rabbit (Oryctolagus
cuniculus) [TaxId: 9986]}
Length = 190
Score = 124 bits (312), Expect = 7e-34
Identities = 84/185 (45%), Positives = 120/185 (64%), Gaps = 28/185 (15%)
Query: 1 EHYTENFIQSILTALGDKLKGSVLVVGGDGRYFGDVAVDKIIKISGIRSVLVVGGDGRYF 60
+Y ENFIQSI++ + + LVVGGDGR++
Sbjct: 32 TNYAENFIQSIISTVEPA--------------------------QRQEATLVVGGDGRFY 65
Query: 61 GDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSALIRKHQVTGGIVLTASHNPGGPDND 120
A+ I++I+AANG+ +L++GQNGILSTPAVS +IRK + GGI+LTASHNPGGP+ D
Sbjct: 66 MKEAIQLIVRIAAANGIGRLVIGQNGILSTPAVSCIIRKIKAIGGIILTASHNPGGPNGD 125
Query: 121 FGIKFNTSNGGPAPDAVTENIYKITTQIKTYSIVPDLKVDITSIGSSSYEVDGA--QFQV 178
FGIKFN SNGGPAP+A+T+ I++I+ I+ Y+I PDLKVD+ +G ++++ F V
Sbjct: 126 FGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDLKVDLGVLGKQQFDLENKFKPFTV 185
Query: 179 DVIDS 183
+++DS
Sbjct: 186 EIVDS 190
>d3pmga3 c.84.1.1 (A:304-420) Phosphoglucomutase {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 117
Score = 119 bits (299), Expect = 5e-33
Identities = 81/117 (69%), Positives = 100/117 (85%)
Query: 300 NPSDSLAVLAAHLDSIPYFKKTGVKGYARSMPTGAAVDRVAKANNKELFEVPTGWKYFGN 359
NPSDS+AV+AA++ SIPYF++TGV+G+ARSMPT A+DRVA A L+E PTGWK+FGN
Sbjct: 1 NPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWKFFGN 60
Query: 360 LMDAGRLSLCGEESFGTGSDHIREKDGIWAVLAWLSVVEHTGKPVEEILKSHWKQYG 416
LMDA +LSLCGEESFGTGSDHIREKDG+WAVLAWLS++ + VE+ILK HW ++G
Sbjct: 61 LMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILATRKQSVEDILKDHWHKFG 117
>d1kfia3 c.84.1.1 (A:324-443) Exocytosis-sensitive phosphoprotein,
pp63/parafusin {Paramecium tetraurelia [TaxId: 5888]}
Length = 120
Score = 100 bits (250), Expect = 4e-26
Identities = 75/122 (61%), Positives = 93/122 (76%), Gaps = 9/122 (7%)
Query: 301 PSDSLAVLAAHLDSIPYFKKTGVKGYARSMPTGAAVDRVAKANNKELFEVPTGWKYFGNL 360
PSDSLAV+AA+ + I K G+ G ARSMPT A+D+VA N +LFE PTGWK+FGNL
Sbjct: 2 PSDSLAVIAANANLI---FKNGLLGAARSMPTSGALDKVAAKNGIKLFETPTGWKFFGNL 58
Query: 361 MDAGRLSLCGEESFGTGSDHIREKDGIWAVLAWLSVVEHTGKP------VEEILKSHWKQ 414
MDAG ++LCGEESFGTGS+HIREKDGIWAVLAWL+++ H K VEEI+ +W+Q
Sbjct: 59 MDAGLINLCGEESFGTGSNHIREKDGIWAVLAWLTILAHKNKNTDHFVTVEEIVTQYWQQ 118
Query: 415 YG 416
+G
Sbjct: 119 FG 120
>d3pmga2 c.84.1.1 (A:191-303) Phosphoglucomutase {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 113
Score = 97.6 bits (242), Expect = 4e-25
Identities = 73/116 (62%), Positives = 88/116 (75%), Gaps = 3/116 (2%)
Query: 184 VEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINAMHGVTGPYVKKIFLEELGAQPDNA 243
VE Y +++ IFDF L+ L+ G + K+ I+AMHGV GPYVKKI EELGA ++A
Sbjct: 1 VEAYATMLRNIFDFNALKELLSGPNR---LKIRIDAMHGVVGPYVKKILCEELGAPANSA 57
Query: 244 VNTTPLPDFGGHHPDPNLTYAADLVQAMQAGDFDLGAAFDGDGDRNMVLGKKAFFV 299
VN PL DFGGHHPDPNLTYAADLV+ M++G+ D GAAFDGDGDRNM+LGK FFV
Sbjct: 58 VNCVPLEDFGGHHPDPNLTYAADLVETMKSGEHDFGAAFDGDGDRNMILGKHGFFV 113
>d1kfia2 c.84.1.1 (A:206-323) Exocytosis-sensitive phosphoprotein,
pp63/parafusin {Paramecium tetraurelia [TaxId: 5888]}
Length = 118
Score = 94.1 bits (233), Expect = 8e-24
Identities = 56/123 (45%), Positives = 69/123 (56%), Gaps = 12/123 (9%)
Query: 184 VEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINAMHGVTGPYVKKIFLEELGAQPDNA 243
V+ Y QLM+++FDF L+ L F + MHGV GPY K IF LG ++
Sbjct: 1 VQDYTQLMQKLFDFDLLKGLFSNK----DFSFRFDGMHGVAGPYAKHIFGTLLGCSKESL 56
Query: 244 VNTTPLPDFGGHHPDPNLTYAADLV-------QAMQAGDFDLGAAFDGDGDRNMVLGKKA 296
+N P DFGG HPDPNLTYA DLV + GAA DGD DRNM+LG++
Sbjct: 57 LNCDPSEDFGGGHPDPNLTYAHDLVELLDIHKKKDVGTVPQFGAACDGDADRNMILGRQ- 115
Query: 297 FFV 299
FFV
Sbjct: 116 FFV 118
>d3pmga4 d.129.2.1 (A:421-561) Phosphoglucomutase {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 141
Score = 62.0 bits (151), Expect = 3e-12
Identities = 18/44 (40%), Positives = 23/44 (52%)
Query: 417 RNYFTRYDYENCSAAPCNQMMDELEKKVSAPEFKGVTLSAEGRS 460
RN+FTRYDYE A +MM +LE + F G SA +
Sbjct: 1 RNFFTRYDYEEVEAEGATKMMKDLEALMFDRSFVGKQFSANDKV 44
>d1kfia4 d.129.2.1 (A:444-572) Exocytosis-sensitive phosphoprotein,
pp63/parafusin {Paramecium tetraurelia [TaxId: 5888]}
Length = 129
Score = 56.7 bits (137), Expect = 1e-10
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 417 RNYFTRYDYENCSAAPCNQMMDELEKKVSAPE 448
RNY++RYDYE +A N+MM+ L+ K E
Sbjct: 1 RNYYSRYDYEQVDSAGANKMMEHLKTKFQYFE 32
>d1p5dx2 c.84.1.1 (X:155-258) Phosphomannomutase/phosphoglucomutase
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 104
Score = 53.5 bits (128), Expect = 1e-09
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 3/101 (2%)
Query: 200 LQSLIKGSSGRPPFKLLINAMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDP 259
+ + + P K++++ +GV G ++ + +F HHPDP
Sbjct: 6 FKQIRDDIAMAKPMKVVVDCGNGVAGVIAPQLIEA--LGCSVIPLYCEVDGNFPNHHPDP 63
Query: 260 NLTYA-ADLVQAMQAGDFDLGAAFDGDGDRNMVLGKKAFFV 299
DL+ ++A + DLG AFDGDGDR V+ +
Sbjct: 64 GKPENLKDLIAKVKAENADLGLAFDGDGDRVGVVTNTGTII 104
>d1p5dx1 c.84.1.1 (X:9-154) Phosphomannomutase/phosphoglucomutase
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 146
Score = 38.6 bits (89), Expect = 4e-04
Identities = 28/108 (25%), Positives = 42/108 (38%), Gaps = 7/108 (6%)
Query: 37 AVDKIIKISGIRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGILSTPAVSAL 96
A+ G V VG DGR G V ++I+ G V G++ TP +
Sbjct: 30 AIGSESLARGEPCV-AVGRDGRLSGPELVKQLIQGLVDCGC---QVSDVGMVPTPVLYYA 85
Query: 97 IRKHQVTGGIVLTASHNPGGPDNDFGIKFNTSNGGPAPDAVTENIYKI 144
+ G++LT SHNP N G K + A + + +I
Sbjct: 86 ANVLEGKSGVMLTGSHNP-PDYN--GFKIVVAGETLANEQIQALRERI 130
>d1vlja_ e.22.1.2 (A:) NADH-dependent butanol dehydrogenase A
(TM0820) {Thermotoga maritima [TaxId: 2336]}
Length = 398
Score = 32.7 bits (73), Expect = 0.11
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 32 YFGDVAVDKI---IKISGIRSVLVVGGDGRYFGDVAVDKIIKISAANGVAKLIVGQNGIL 88
FG + KI IK +GIR VL + G G + D+++ +G+ + V +G+
Sbjct: 16 VFGRGTIPKIGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEV--SGVK 73
Query: 89 STPAVSALIRKHQ 101
P +S + +
Sbjct: 74 PNPVLSKVHEAVE 86
>d1p5dx3 c.84.1.1 (X:259-367) Phosphomannomutase/phosphoglucomutase
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 109
Score = 30.4 bits (68), Expect = 0.17
Identities = 17/108 (15%), Positives = 29/108 (26%), Gaps = 7/108 (6%)
Query: 305 LAVLAAHLDSIPYFKKTGVKGYARSMPTGAAVDRVAKANNKELFEVPTGWKYFGNLMDAG 364
L + A + S + G T + + TG M
Sbjct: 6 LMLFAKDVVS----RNPGADIIFDVKCTRR-LIALISGYGGRPVMWKTGHSLIKKKMKET 60
Query: 365 RLSLCGEES--FGTGSDHIREKDGIWAVLAWLSVVEHTGKPVEEILKS 410
L GE S DGI++ L ++ + E + +
Sbjct: 61 GALLAGEMSGHVFFKERWFGFDDGIYSAARLLEILSQDQRDSEHVFSA 108
>d1q3la_ b.34.13.2 (A:) Heterochromatin protein 1, HP1 {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 52
Score = 27.0 bits (60), Expect = 0.73
Identities = 8/48 (16%), Positives = 18/48 (37%), Gaps = 8/48 (16%)
Query: 404 VEEILKSHWKQYGRNYFTR---YDYENCSAAP-----CNQMMDELEKK 443
VE+I+ ++ Y+ + Y + P C ++ + E
Sbjct: 4 VEKIIDRRVRKGMVEYYLKWKGYPETENTWEPENNLDCQDLIQQYEAS 51
>d1guwa_ b.34.13.2 (A:) Heterochromatin protein 1, HP1 {Mouse (Mus
musculus), HP1 beta (MOD1, M31) [TaxId: 10090]}
Length = 73
Score = 27.5 bits (61), Expect = 0.77
Identities = 10/51 (19%), Positives = 16/51 (31%), Gaps = 14/51 (27%)
Query: 404 VEEILKS-----------HWKQYGRNYFTRYDYENCSAAPCNQMMDELEKK 443
VE++L WK + T EN C ++ E +
Sbjct: 16 VEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLD---CPDLIAEFLQS 63
>d2dnta1 b.34.13.2 (A:8-73) Chromodomain protein, Y-like isoform
{Human (Homo sapiens) [TaxId: 9606]}
Length = 66
Score = 26.7 bits (59), Expect = 1.4
Identities = 9/50 (18%), Positives = 20/50 (40%), Gaps = 10/50 (20%)
Query: 404 VEEILKSHWKQYGRNYF----TRYDYENCSAAP------CNQMMDELEKK 443
VE I+ + G+ + YD E+ + P C + + + ++
Sbjct: 9 VERIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQHLVNCEEYIHDFNRR 58
>d1obba2 d.162.1.2 (A:173-480) Alpha-glucosidase AglA {Thermotoga
maritima [TaxId: 2336]}
Length = 308
Score = 28.1 bits (62), Expect = 2.5
Identities = 5/50 (10%), Positives = 16/50 (32%)
Query: 391 LAWLSVVEHTGKPVEEILKSHWKQYGRNYFTRYDYENCSAAPCNQMMDEL 440
WL+ + G +L ++ +++ + + + M
Sbjct: 32 GIWLNRFRYNGGNAYPLLDKWIEEKSKDWKPENPFNDQLSPAAIDMYRFY 81
>d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH)
{Lyme disease spirochete (Borrelia burgdorferi) [TaxId:
139]}
Length = 388
Score = 27.8 bits (61), Expect = 3.7
Identities = 26/169 (15%), Positives = 55/169 (32%), Gaps = 26/169 (15%)
Query: 330 MPTGAAVDRVAKANNKELFEVPT-GW-KYFGNLMDAGRLSLCGEESFGTGSDHIREKDGI 387
+P A+ V +A N + G ++ G+++ ++ G+D + +
Sbjct: 237 VPQITAICDVYEACNNTNICIIADGGIRFSGDVV----------KAIAAGADSVMIGNLF 286
Query: 388 -WAVLAWLSVVEHTGKPV-EEILKSHWKQYGRNYFTRYDYENCSAAPCNQMMDELEKKVS 445
+ + + GK + R +RY ++ E K
Sbjct: 287 AGTKESPSEEIIYNGKKFKSYVGMGSISAMKRGSKSRYFQ-----------LENNEPKKL 335
Query: 446 APEFKGVTLSAEGRSGSWWRQEKQGVRSAISQTGLVHIQIIRNR-QFRR 493
PE + G+ Q K G+ S + G I ++ +F +
Sbjct: 336 VPEGIEGMVPYSGKLKDILTQLKGGLMSGMGYLGAATISDLKINSKFVK 384
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides
[TaxId: 1063]}
Length = 288
Score = 27.6 bits (61), Expect = 3.9
Identities = 21/95 (22%), Positives = 28/95 (29%), Gaps = 13/95 (13%)
Query: 144 ITTQIKTYSIVPDLKVDITSIGSSSYEVDGAQFQVDVID-SVEVYLQLMKEIFDFPKLQS 202
I Q I + + D SV V DFP L S
Sbjct: 194 IVPQFSQTDIN------FQRVPVVDTSNPFIARWIPTADESVVVIRFRNPRGIDFPYLTS 247
Query: 203 LIKGSS-GRP-----PFKLLINAMHGVTGPYVKKI 231
+I GS R P L AM + P + ++
Sbjct: 248 MIHGSWMSRANSIVVPGNKLDLAMQLILTPLIDRV 282
>d1nfga1 b.92.1.3 (A:1-51,A:382-457) D-hydantoinase {Burkholderia
pickettii [TaxId: 329]}
Length = 127
Score = 26.5 bits (58), Expect = 4.5
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 47 IRSVLVVGGDGRYFGDVAV--DKIIKISAANGVAK 79
I++ +V DG D+ + KI +I A G A+
Sbjct: 5 IKNGTIVTADGISRADLGIKDGKITQIGGALGPAE 39
>d1k8qa_ c.69.1.6 (A:) Gastric lipase {Dog (Canis familiaris)
[TaxId: 9615]}
Length = 377
Score = 27.0 bits (58), Expect = 5.3
Identities = 35/279 (12%), Positives = 67/279 (24%), Gaps = 28/279 (10%)
Query: 193 EIFDFPKLQSLIKGSSGRPPFKLLINAMHGVTGP---YVKKIFLEELGAQPDNAVNTTPL 249
I P + + RP L HG+ ++ + L +A L
Sbjct: 41 GIDRIPYGRKNSENIGRRPVAFLQ----HGLLASATNWISNLPNNSLAFILADAGYDVWL 96
Query: 250 PDFGGHHPDPNLTYAADLVQAMQAGDFDLGAAFDGDGDRNMVL----GKKAFFVNPSDSL 305
+ G+ Y + A FD A +D + +L K +V S
Sbjct: 97 GNSRGNTWARRNLYYSPDSVEFWAFSFDEMAKYDLPATIDFILKKTGQDKLHYVGHSQGT 156
Query: 306 AVLAAHLDSIPYFKK-------TGVKGYARSMPTGAAVDRVAKANNKELFEVPTGWKYFG 358
+ + P K + T + + +L +
Sbjct: 157 TIGFIAFSTNPKLAKRIKTFYALAPVATVKYTETLINKLMLVPSFLFKLIFGNKIFYPHH 216
Query: 359 NLMDAGRLSLCGEESFGTGSDHIREKDGIWAVLAW-----LSVVEHTGKPVEEILKSHWK 413
+C E+ + + + + H HW
Sbjct: 217 FFDQFLATEVCSRETVDLLCSNALFIICGFDTMNLNMSRLDVYLSHNPAGTSVQNVLHWS 276
Query: 414 Q-YGRNYFTRYDY----ENCSAAPCNQMMDELEKKVSAP 447
Q F +D+ +N + + P
Sbjct: 277 QAVKSGKFQAFDWGSPVQNMMHYHQSMPPYYNLTDMHVP 315
>d2qv7a1 e.52.1.2 (A:1-312) Diacylglycerol kinase DgkB
{Staphylococcus aureus [TaxId: 1280]}
Length = 312
Score = 26.9 bits (58), Expect = 6.0
Identities = 21/131 (16%), Positives = 40/131 (30%), Gaps = 7/131 (5%)
Query: 264 AADLVQAMQAGDFDLGAAFDGDGDRNMVLGKKAFFVNPSDSLAVLAAHLDSIPYFKKTGV 323
A + ++D+ A GDG N V+ A L V+ +
Sbjct: 47 ATLEAERAMHENYDVLIAAGGDGTLNEVVNGIAEK-PNRPKLGVIPMGTVNDFGRALHIP 105
Query: 324 KGYARSMPTGAAVDRVAKANNKELFEVPTGWKYFGNLMDAGRLSLCGEESFGTGSDHIRE 383
A+D + + ++ ++ +YF NL G+L+ E+ +
Sbjct: 106 NDIM------GALDVIIEGHSTKVDIGKMNNRYFINLAAGGQLTQVSYETPSKLKSIVGP 159
Query: 384 KDGIWAVLAWL 394
L
Sbjct: 160 FAYYIKGFEML 170
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.137 0.406
Gapped
Lambda K H
0.267 0.0595 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,951,249
Number of extensions: 96747
Number of successful extensions: 323
Number of sequences better than 10.0: 1
Number of HSP's gapped: 309
Number of HSP's successfully gapped: 25
Length of query: 499
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 410
Effective length of database: 1,185,626
Effective search space: 486106660
Effective search space used: 486106660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.3 bits)