Query psy598
Match_columns 194
No_of_seqs 134 out of 934
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 23:30:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy598.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/598hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3arc_L Photosystem II reaction 20.8 1.5E+02 0.0051 17.8 4.2 26 119-144 11-36 (37)
2 3vw7_A Proteinase-activated re 7.7 1.8E+02 0.0061 24.4 2.0 16 60-75 435-450 (484)
3 4dkl_A MU-type opioid receptor 7.7 2.2E+02 0.0075 23.5 2.5 16 61-76 427-442 (464)
4 3eml_A Human adenosine A2A rec 6.7 2.6E+02 0.0088 23.2 2.5 17 60-76 437-453 (488)
5 2koe_A Human cannabinoid recep 6.4 32 0.0011 19.5 -2.5 16 60-75 8-23 (40)
6 2ks9_A Substance-P receptor; w 6.2 2.9E+02 0.01 22.0 2.5 15 61-75 293-307 (364)
7 4eiy_A Adenosine receptor A2A/ 6.1 2.9E+02 0.01 22.6 2.5 16 60-75 396-411 (447)
8 3vn3_A Antifreeze protein; rig 6.1 2.4E+02 0.0082 23.3 1.9 18 172-189 159-176 (223)
9 3uon_A Human M2 muscarinic ace 6.1 2.3E+02 0.0078 23.5 1.8 17 60-76 428-444 (467)
10 3rze_A Histamine H1 receptor, 5.9 3E+02 0.01 22.6 2.5 16 60-75 413-428 (452)
No 1
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=20.83 E-value=1.5e+02 Score=17.84 Aligned_cols=26 Identities=15% Similarity=0.274 Sum_probs=20.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHH
Q psy598 119 NYPKSFMVWIALHGVLFLFLFSDFYK 144 (194)
Q Consensus 119 ~~~~~~~~~~~~~~~s~l~LF~nFy~ 144 (194)
+..+.-.+|+.....+..+||+++|.
T Consensus 11 ELNRTSLy~GLLlifvlavlFssyff 36 (37)
T 3arc_L 11 ELNRTSLYLGLLLILVLALLFSSYFF 36 (37)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eechhhHHHHHHHHHHHHHHhhhhcc
Confidence 34566678888777888899999874
No 2
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}
Probab=7.75 E-value=1.8e+02 Score=24.37 Aligned_cols=16 Identities=13% Similarity=0.575 Sum_probs=13.6
Q ss_pred hhhhHhHHHHHHHHHH
Q psy598 60 FFALLNTFVHIIMYFY 75 (194)
Q Consensus 60 ~~~~lNs~VHviMY~Y 75 (194)
+.+.+|+.++|+.|++
T Consensus 435 ~L~~~ns~iNPiIY~~ 450 (484)
T 3vw7_A 435 CVSSISCCIDPLIYYY 450 (484)
T ss_dssp HHHTTHHHHHHHHHHH
T ss_pred HHHHhccccchHHHHH
Confidence 4566999999999986
No 3
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*
Probab=7.65 E-value=2.2e+02 Score=23.51 Aligned_cols=16 Identities=13% Similarity=0.472 Sum_probs=13.8
Q ss_pred hhhHhHHHHHHHHHHH
Q psy598 61 FALLNTFVHIIMYFYY 76 (194)
Q Consensus 61 ~~~lNs~VHviMY~YY 76 (194)
.+.+|+.++|+.|++.
T Consensus 427 L~~~ns~~NPiIY~~~ 442 (464)
T 4dkl_A 427 LGYTNSCLNPVLYAFL 442 (464)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHhhhchhHHHHHHh
Confidence 6679999999999873
No 4
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Probab=6.70 E-value=2.6e+02 Score=23.24 Aligned_cols=17 Identities=24% Similarity=0.440 Sum_probs=14.3
Q ss_pred hhhhHhHHHHHHHHHHH
Q psy598 60 FFALLNTFVHIIMYFYY 76 (194)
Q Consensus 60 ~~~~lNs~VHviMY~YY 76 (194)
+.+.+|+.++|++|.+.
T Consensus 437 ~l~~~ns~~NPiIY~~~ 453 (488)
T 3eml_A 437 VLSHTNSVVNPFIYAYR 453 (488)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhchhhhhhc
Confidence 46679999999999863
No 5
>2koe_A Human cannabinoid receptor 1 - helix 7/8 peptide; GPCR, HCB1, membrane protein, signaling protein; NMR {Homo sapiens}
Probab=6.37 E-value=32 Score=19.51 Aligned_cols=16 Identities=38% Similarity=0.609 Sum_probs=12.3
Q ss_pred hhhhHhHHHHHHHHHH
Q psy598 60 FFALLNTFVHIIMYFY 75 (194)
Q Consensus 60 ~~~~lNs~VHviMY~Y 75 (194)
+.+.+|+.+.|+.|+.
T Consensus 8 ~l~~~ns~lNPiIY~~ 23 (40)
T 2koe_A 8 MLCLLNSTVNPIIYAL 23 (40)
T ss_dssp HHHHHHHHSSTTTTBT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5667888888888864
No 6
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A
Probab=6.22 E-value=2.9e+02 Score=21.99 Aligned_cols=15 Identities=27% Similarity=0.459 Sum_probs=12.7
Q ss_pred hhhHhHHHHHHHHHH
Q psy598 61 FALLNTFVHIIMYFY 75 (194)
Q Consensus 61 ~~~lNs~VHviMY~Y 75 (194)
.+.+|+.++|+.|.+
T Consensus 293 l~~~ns~~NPiiY~~ 307 (364)
T 2ks9_A 293 LAMSSTMYNPIIYCC 307 (364)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 456899999999985
No 7
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Probab=6.13 E-value=2.9e+02 Score=22.64 Aligned_cols=16 Identities=25% Similarity=0.505 Sum_probs=13.7
Q ss_pred hhhhHhHHHHHHHHHH
Q psy598 60 FFALLNTFVHIIMYFY 75 (194)
Q Consensus 60 ~~~~lNs~VHviMY~Y 75 (194)
+.+.+|+.++|+.|.+
T Consensus 396 ~l~~~ns~~NPiIY~~ 411 (447)
T 4eiy_A 396 VLSHTNSVVNPFIYAY 411 (447)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccchhhhHh
Confidence 4667899999999986
No 8
>3vn3_A Antifreeze protein; right-handed beta-helix; HET: IYR; 0.95A {Typhula ishikariensis}
Probab=6.09 E-value=2.4e+02 Score=23.34 Aligned_cols=18 Identities=22% Similarity=0.292 Sum_probs=14.9
Q ss_pred ccccCCcccceEEEecCc
Q psy598 172 TVFLGKIKCPVFFQVDGK 189 (194)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~ 189 (194)
.+.+|...|++|+||.|.
T Consensus 159 ~L~nGA~a~NVfWqV~gs 176 (223)
T 3vn3_A 159 TLVGGAQAKNIIWVVAGA 176 (223)
T ss_dssp EEETTCCGGGEEEEESSC
T ss_pred EEeCCcccccEEEEeccE
Confidence 456788999999999874
No 9
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Probab=6.06 E-value=2.3e+02 Score=23.48 Aligned_cols=17 Identities=12% Similarity=0.334 Sum_probs=14.4
Q ss_pred hhhhHhHHHHHHHHHHH
Q psy598 60 FFALLNTFVHIIMYFYY 76 (194)
Q Consensus 60 ~~~~lNs~VHviMY~YY 76 (194)
+.+.+|+.++|+.|.+.
T Consensus 428 ~L~~~ns~~NPiIY~~~ 444 (467)
T 3uon_A 428 WLCYINSTINPACYALC 444 (467)
T ss_dssp HHHHHTTTHHHHHHHHH
T ss_pred HHHHHhhhhhhHHHHHc
Confidence 46789999999999863
No 10
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Probab=5.94 E-value=3e+02 Score=22.58 Aligned_cols=16 Identities=13% Similarity=0.453 Sum_probs=14.0
Q ss_pred hhhhHhHHHHHHHHHH
Q psy598 60 FFALLNTFVHIIMYFY 75 (194)
Q Consensus 60 ~~~~lNs~VHviMY~Y 75 (194)
+.+.+|+.++|+.|++
T Consensus 413 ~L~~~ns~~NPiIY~~ 428 (452)
T 3rze_A 413 WLGYINSTLNPLIYPL 428 (452)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccchhhhh
Confidence 4678999999999986
Done!