Query psy598
Match_columns 194
No_of_seqs 134 out of 934
Neff 5.5
Searched_HMMs 13730
Date Fri Aug 16 23:30:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy598.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/598hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtl1 f.23.31.1 (L:1-37) Pho 22.1 64 0.0047 17.9 4.2 26 119-144 11-36 (37)
2 d1vf5c3 f.23.23.1 (C:250-286) 15.5 18 0.0013 20.5 0.4 13 16-28 17-29 (37)
3 d1bkba1 b.34.5.2 (A:4-74) Euka 13.0 32 0.0023 21.6 1.1 22 169-190 5-26 (71)
4 d1q90a3 f.23.23.1 (A:248-292) 12.6 16 0.0011 21.6 -0.6 14 15-28 15-28 (45)
5 d2eifa1 b.34.5.2 (A:1-73) Euka 8.3 59 0.0043 20.3 1.1 21 170-190 7-27 (73)
6 d1ppjc2 f.21.1.2 (C:15-260) Mi 8.1 1.2E+02 0.0089 23.0 3.1 59 93-151 21-97 (246)
7 d1ueba1 b.34.5.2 (A:1-63) Elon 6.7 81 0.0059 19.0 1.1 17 174-190 3-19 (63)
8 d1u19a_ f.13.1.2 (A:) Rhodopsi 5.5 1.3E+02 0.0094 21.9 1.9 16 60-75 293-308 (348)
9 d1k8kf_ d.198.2.1 (F:) ARPC4 ( 5.4 1.1E+02 0.0077 22.5 1.3 22 20-41 99-123 (167)
10 d1tuba2 d.79.2.1 (A:246-440) T 4.8 85 0.0062 22.7 0.4 22 10-38 143-164 (195)
No 1
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=22.11 E-value=64 Score=17.92 Aligned_cols=26 Identities=15% Similarity=0.274 Sum_probs=19.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHH
Q psy598 119 NYPKSFMVWIALHGVLFLFLFSDFYK 144 (194)
Q Consensus 119 ~~~~~~~~~~~~~~~s~l~LF~nFy~ 144 (194)
+..+.-.+|+.....+.-+||+++|.
T Consensus 11 eLNrtsLy~GlLlifvl~vLFssYfF 36 (37)
T d2axtl1 11 ELNRTSLYLGLLLILVLALLFSSYFF 36 (37)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHhc
Confidence 34566678887777778899999874
No 2
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=15.53 E-value=18 Score=20.50 Aligned_cols=13 Identities=23% Similarity=0.593 Sum_probs=10.1
Q ss_pred hhhhhhhhhccCC
Q psy598 16 FFDTFFFIMRKKY 28 (194)
Q Consensus 16 llDTvf~VLRKK~ 28 (194)
++--+++||+||+
T Consensus 17 ~laQi~lVlKKKQ 29 (37)
T d1vf5c3 17 MLAQLMLILKKKQ 29 (37)
T ss_dssp HHHHHHHHHHTGG
T ss_pred HHHHHHHHHHHHH
Confidence 4556789999984
No 3
>d1bkba1 b.34.5.2 (A:4-74) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=12.97 E-value=32 Score=21.59 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=17.9
Q ss_pred hccccccCCcccceEEEecCcc
Q psy598 169 ANRTVFLGKIKCPVFFQVDGKH 190 (194)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~ 190 (194)
+.+.++-+++|.+.++..||+.
T Consensus 5 ~~~~i~a~~lKkG~~i~~~g~p 26 (71)
T d1bkba1 5 STKYVEAGELKEGSYVVIDGEP 26 (71)
T ss_dssp CCEEEEGGGCCTTCEEEETTEE
T ss_pred eeeEEEHHHccCCCEEEECCEE
Confidence 3456788999999999999863
No 4
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=12.55 E-value=16 Score=21.64 Aligned_cols=14 Identities=14% Similarity=0.465 Sum_probs=10.7
Q ss_pred hhhhhhhhhhccCC
Q psy598 15 EFFDTFFFIMRKKY 28 (194)
Q Consensus 15 EllDTvf~VLRKK~ 28 (194)
-++--+|+||+||+
T Consensus 15 v~laQi~LVLKKKQ 28 (45)
T d1q90a3 15 VLLTQVLLVLKKKQ 28 (45)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34567899999984
No 5
>d2eifa1 b.34.5.2 (A:1-73) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=8.32 E-value=59 Score=20.32 Aligned_cols=21 Identities=24% Similarity=0.488 Sum_probs=17.3
Q ss_pred ccccccCCcccceEEEecCcc
Q psy598 170 NRTVFLGKIKCPVFFQVDGKH 190 (194)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~ 190 (194)
...++-+++|.+.+++.||+.
T Consensus 7 ~~~i~~~~lKkG~~i~~~g~p 27 (73)
T d2eifa1 7 TKQVNVGSLKVGQYVMIDGVP 27 (73)
T ss_dssp EEEEEGGGCCTTSEEEETTEE
T ss_pred ceEEEHHHccCCCEEEECCEE
Confidence 456788899999999999863
No 6
>d1ppjc2 f.21.1.2 (C:15-260) Mitochondrial cytochrome b subunit, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.06 E-value=1.2e+02 Score=23.05 Aligned_cols=59 Identities=10% Similarity=0.128 Sum_probs=34.8
Q ss_pred hhhcchhhhhhhHHHhhhhhhhc-cCCCC----------c-----hHHHHH--HHHHHHHHHHHHHHHHHhhcCCCC
Q psy598 93 KYLTTFQMVQFVAIFVHQFQLLF-VECNY----------P-----KSFMVW--IALHGVLFLFLFSDFYKQRYTPKD 151 (194)
Q Consensus 93 k~IT~lQivQFvi~~~~~~~~~~-~~C~~----------~-----~~~~~~--~~~~~~s~l~LF~nFy~~~Y~~~~ 151 (194)
..+...=++|.+.|+..+.++.. .++.+ + +....+ .......|+=++..+|..+|+++|
T Consensus 21 ~ll~~~~~iqiiTGi~L~~~Y~p~~~~A~~Sv~~i~~~v~~G~~iR~~H~~gas~~~~~~~lHm~r~~~~~sy~~~~ 97 (246)
T d1ppjc2 21 SLLGICLILQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWIIRYMHANGASMFFICLYMHVGRGLYYGSYTFLE 97 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCTTTHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCcccCchhhcchhHhHHHHHHHHHHHHHHHHHHhcCccchH
Confidence 66677778899988876654321 11111 1 112222 223345677889999999997643
No 7
>d1ueba1 b.34.5.2 (A:1-63) Elongation factor P N-terminal domain {Thermus thermophilus HB8 [TaxId: 300852]}
Probab=6.72 E-value=81 Score=18.96 Aligned_cols=17 Identities=12% Similarity=0.147 Sum_probs=13.9
Q ss_pred ccCCcccceEEEecCcc
Q psy598 174 FLGKIKCPVFFQVDGKH 190 (194)
Q Consensus 174 ~~~~~~~~~~~~~~~~~ 190 (194)
+-++++.++.++.||+.
T Consensus 3 ~a~elkkG~~i~~~g~~ 19 (63)
T d1ueba1 3 SVTDLRPGTKVKMDGGL 19 (63)
T ss_dssp EGGGCCTTCEEEETTEE
T ss_pred cHHHCCCCCEEEECCEE
Confidence 45688999999999974
No 8
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.46 E-value=1.3e+02 Score=21.93 Aligned_cols=16 Identities=25% Similarity=0.548 Sum_probs=13.2
Q ss_pred hhhhHhHHHHHHHHHH
Q psy598 60 FFALLNTFVHIIMYFY 75 (194)
Q Consensus 60 ~~~~lNs~VHviMY~Y 75 (194)
+.+.+|+.++|+.|.+
T Consensus 293 ~l~~~ns~iNPiIY~~ 308 (348)
T d1u19a_ 293 FFAKTSAVYNPVIYIM 308 (348)
T ss_dssp HHGGGGGTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3557999999999976
No 9
>d1k8kf_ d.198.2.1 (F:) ARPC4 (20 kDa subunit) {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.38 E-value=1.1e+02 Score=22.53 Aligned_cols=22 Identities=36% Similarity=0.439 Sum_probs=15.6
Q ss_pred hhhhhccCCCc---eeEeeeehhcc
Q psy598 20 FFFIMRKKYNQ---VSTLHVIHHGI 41 (194)
Q Consensus 20 vf~VLRKK~~q---lsFLHvYHH~~ 41 (194)
-|.|||+||-+ +|||=..+|.-
T Consensus 99 ~F~ILRrkPi~GYDISFLItn~h~e 123 (167)
T d1k8kf_ 99 NFFILRRKPVEGYDISFLITNFHTE 123 (167)
T ss_dssp TSTTBCSSCCTTCSEEEEEEHHHHH
T ss_pred hceeeeecCcCCCceeeeehhHHHH
Confidence 48999999743 56776666654
No 10
>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]}
Probab=4.83 E-value=85 Score=22.67 Aligned_cols=22 Identities=18% Similarity=0.460 Sum_probs=13.6
Q ss_pred hHhhhhhhhhhhhhhccCCCceeEeeeeh
Q psy598 10 FSKFTEFFDTFFFIMRKKYNQVSTLHVIH 38 (194)
Q Consensus 10 lSK~~EllDTvf~VLRKK~~qlsFLHvYH 38 (194)
+.++.+=.|..+ +|| .|||||=
T Consensus 143 f~~i~~~Fdkl~---~rk----Aflh~Y~ 164 (195)
T d1tuba2 143 WARLDHKFDLMY---AKR----AFVHWYV 164 (195)
T ss_dssp HHHHHHHHHHHT---TTT----CCTTTGG
T ss_pred HHHHHHHHHHHH---hhc----hHHHHhc
Confidence 455555555544 443 8999994
Done!