RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy598
(194 letters)
>gnl|CDD|216332 pfam01151, ELO, GNS1/SUR4 family. Members of this family are
involved in long chain fatty acid elongation systems
that produce the 26-carbon precursors for ceramide and
sphingolipid synthesis. Predicted to be integral
membrane proteins, in eukaryotes they are probably
located on the endoplasmic reticulum. Yeast ELO3 affects
plasma membrane H+-ATPase activity, and may act on a
glucose-signaling pathway that controls the expression
of several genes that are transcriptionally regulated by
glucose such as PMA1.
Length = 244
Score = 160 bits (408), Expect = 8e-50
Identities = 68/161 (42%), Positives = 92/161 (57%), Gaps = 8/161 (4%)
Query: 1 MARTCWWY--YFSKFTEFFDTFFFIMRKKYNQVSTLHVIHHGIMPMSVWMGMKFAPGGHS 58
M +WY + SKF E DT F ++RKK Q+S LHV HH M + W+G+K+ PGGH
Sbjct: 84 MGLVGFWYWLFLSKFLELLDTVFLVLRKKQRQLSFLHVYHHATMLLYSWLGLKYGPGGHF 143
Query: 59 TFFALLNTFVHIIMYFYYMMTAMGPEYQKYIWWKKYLTTFQMVQFVAIFVHQFQLLFVE- 117
F ALLN+FVH+IMYFYY + A+G +WWKKY+T Q++QFV H L+
Sbjct: 144 WFIALLNSFVHVIMYFYYFLAALGAR-GLPVWWKKYITQLQIIQFVLGLAHVGYALYNYT 202
Query: 118 ---CNYPKSFMVWIA-LHGVLFLFLFSDFYKQRYTPKDKVT 154
C P V + ++ V +LFLF +FY + Y K
Sbjct: 203 KGGCGGPFPKAVRLGLVYYVSYLFLFLNFYIKSYKKPKKKK 243
>gnl|CDD|140278 PTZ00251, PTZ00251, fatty acid elongase; Provisional.
Length = 272
Score = 46.8 bits (111), Expect = 1e-06
Identities = 35/97 (36%), Positives = 51/97 (52%), Gaps = 10/97 (10%)
Query: 11 SKFTEFFDTFFFIMRKKYNQVSTLHVIHHGIMPMSVWMGMKFAPGGHSTFF--ALLNTFV 68
SK EF DTFF IM K ++ L HH + + WM + G S + A +N FV
Sbjct: 121 SKVPEFGDTFFLIMGGK--KLPFLSWFHHVTIFLYAWMSYQ---QGSSIWICAAAMNYFV 175
Query: 69 HIIMYFYYMMTAMGPEYQKYIW-WKKYLTTFQMVQFV 104
H IMYFY+ ++ G ++K + + Y+T Q+ Q V
Sbjct: 176 HSIMYFYFALSEAG--FKKLVKPFAMYITLLQITQMV 210
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein. TolA couples the inner
membrane complex of itself with TolQ and TolR to the
outer membrane complex of TolB and OprL (also called
Pal). Most of the length of the protein consists of
low-complexity sequence that may differ in both length
and composition from one species to another,
complicating efforts to discriminate TolA (the most
divergent gene in the tol-pal system) from paralogs such
as TonB. Selection of members of the seed alignment and
criteria for setting scoring cutoffs are based largely
conserved operon struction. //The Tol-Pal complex is
required for maintaining outer membrane integrity. Also
involved in transport (uptake) of colicins and
filamentous DNA, and implicated in pathogenesis.
Transport is energized by the proton motive force. TolA
is an inner membrane protein that interacts with
periplasmic TolB and with outer membrane porins ompC,
phoE and lamB [Transport and binding proteins, Other,
Cellular processes, Pathogenesis].
Length = 346
Score = 34.4 bits (79), Expect = 0.027
Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 122 KSFMVWIALHGVLFLFL-FSDFYKQRYTPKDKVTGKPVNDGACMV 165
++F++ + LH +L L Y + K + G A +V
Sbjct: 2 RAFLLSLLLHILLLGLLILGSLYH---SVKPEPGGGGEIIQAVLV 43
>gnl|CDD|217553 pfam03430, TATR, Trans-activating transcriptional regulator. This
family of trans-activating transcriptional regulator
(TATR), also known as intermediate early protein 1, are
common to the Nucleopolyhedroviruses.
Length = 571
Score = 32.6 bits (74), Expect = 0.10
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 9/57 (15%)
Query: 57 HSTFFALLNTFVHIIMY-----FYYMMTAMGPEYQKYIWWKKYLTTFQMVQFVAIFV 108
F L ++ MY F +M +MG K + K Y +M+Q ++F
Sbjct: 310 KDVFQTTLINHFNLDMYYAQTTFVTLMQSMGESKSKMLLNKLY----EMIQDRSLFT 362
>gnl|CDD|183737 PRK12773, flhB, flagellar biosynthesis protein FlhB; Reviewed.
Length = 646
Score = 28.1 bits (62), Expect = 3.0
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 65 NTFVHIIMYFYYMMTAMGPEYQKYIWWKKY 94
++FV ++ +Y G + K+I+WK+Y
Sbjct: 44 DSFVKSVLDVFYRFMLFGKRFGKFIFWKQY 73
>gnl|CDD|225783 COG3243, PhaC, Poly(3-hydroxyalkanoate) synthetase [Lipid
metabolism].
Length = 445
Score = 27.7 bits (62), Expect = 4.4
Identities = 14/59 (23%), Positives = 18/59 (30%), Gaps = 13/59 (22%)
Query: 128 IALHGVLFLFLFSDFYKQRYTPKDKVTGKPVNDGACMVSRIANRTVFLGKIKCPVFFQV 186
L G +FY + + G VS V LG I CPV+
Sbjct: 292 TRLPGAAHSEYLRNFYLE----------NRLIRGGLEVS---GTMVDLGDITCPVYNLA 337
>gnl|CDD|237192 PRK12758, PRK12758, DNA topoisomerase IV subunit A; Provisional.
Length = 869
Score = 26.9 bits (60), Expect = 9.3
Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Query: 160 DGACMVSRIANRTVFLGK--IKCPVF 183
DG MV+++A++T F+GK I VF
Sbjct: 528 DGKYMVTKVADKT-FVGKDIIHVAVF 552
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.335 0.144 0.494
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,205,759
Number of extensions: 948451
Number of successful extensions: 1539
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1528
Number of HSP's successfully gapped: 57
Length of query: 194
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 102
Effective length of database: 6,857,034
Effective search space: 699417468
Effective search space used: 699417468
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 56 (25.3 bits)