RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy598
         (194 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 31.7 bits (71), Expect = 0.16
 Identities = 16/83 (19%), Positives = 26/83 (31%), Gaps = 7/83 (8%)

Query: 83  PEYQKYIWWKKY----LTTFQMVQFVAIFVHQFQ-LLFVECNYPKSFMVWIALHGVLFLF 137
           P   +Y +   +    L   +  + + +F   F    F+E         W A   +L   
Sbjct: 467 PYLDQYFYS--HIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL 524

Query: 138 LFSDFYKQRYTPKDKVTGKPVND 160
               FYK      D    + VN 
Sbjct: 525 QQLKFYKPYICDNDPKYERLVNA 547



 Score = 30.2 bits (67), Expect = 0.48
 Identities = 24/139 (17%), Positives = 46/139 (33%), Gaps = 45/139 (32%)

Query: 10  FSKFTEFFDTFFFIMRKKYNQVSTLHVIHHGIMPMSVWMGMKFAPGGHSTFFALLNTFVH 69
            + F   F  F F+ +K         + H      + W     A G       +LNT   
Sbjct: 490 MTLFRMVFLDFRFLEQK---------IRHDS----TAWN----ASGS------ILNTLQQ 526

Query: 70  IIMYFYYMMTAMGPEYQKYIWWKKYLTTFQMVQFVAIFVHQFQLLFVECNYPKSFMVWIA 129
           +  Y  Y +    P+Y++ +     L           F+ + +   +      + ++ IA
Sbjct: 527 LKFYKPY-ICDNDPKYERLV--NAILD----------FLPKIEENLICS--KYTDLLRIA 571

Query: 130 L---HGVLFLFLFSDFYKQ 145
           L          +F + +KQ
Sbjct: 572 LMAEDE----AIFEEAHKQ 586


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 28.1 bits (62), Expect = 2.4
 Identities = 26/108 (24%), Positives = 35/108 (32%), Gaps = 41/108 (37%)

Query: 115 FVECNYPKSFMVWIALHGVLFLFL---------------FSD----FYKQRYTPKDKVTG 155
            V    P+S      L+G L L L               FS+    F   R+ P   V  
Sbjct: 377 LVVSGPPQS------LYG-LNLTLRKAKAPSGLDQSRIPFSERKLKFSN-RFLP---VAS 425

Query: 156 -------KPVNDGACMVSRIANRTV-FLGK-IKCPVFFQVDGKHLNEL 194
                   P +D   +   +    V F  K I+ PV+   DG  L  L
Sbjct: 426 PFHSHLLVPASDL--INKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVL 471


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.335    0.144    0.494 

Gapped
Lambda     K      H
   0.267   0.0726    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,165,970
Number of extensions: 176292
Number of successful extensions: 692
Number of sequences better than 10.0: 1
Number of HSP's gapped: 692
Number of HSP's successfully gapped: 18
Length of query: 194
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 106
Effective length of database: 4,244,745
Effective search space: 449942970
Effective search space used: 449942970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 55 (25.0 bits)