RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy598
         (194 letters)



>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase
           domain {Thermotoga maritima [TaxId: 2336]}
          Length = 192

 Score = 24.7 bits (53), Expect = 7.1
 Identities = 7/66 (10%), Positives = 15/66 (22%), Gaps = 2/66 (3%)

Query: 41  IMPMSVWMGMKFAPGGHSTFFALLNTFVHIIMYFYYMMTAMGPEYQKYIWWKKYLTTFQM 100
                + +      GGHS           II         +    ++ +       +   
Sbjct: 21  PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSE--VLRIAEEKLKEFSDRVSLFK 78

Query: 101 VQFVAI 106
           V +   
Sbjct: 79  VSYREA 84


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.335    0.144    0.494 

Gapped
Lambda     K      H
   0.267   0.0522    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 831,507
Number of extensions: 37388
Number of successful extensions: 220
Number of sequences better than 10.0: 1
Number of HSP's gapped: 217
Number of HSP's successfully gapped: 32
Length of query: 194
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 113
Effective length of database: 1,295,466
Effective search space: 146387658
Effective search space used: 146387658
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 50 (23.5 bits)