BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5980
(103 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1LXT|A Chain A, Structure Of Phosphotransferase Phosphoglucomutase From
Rabbit
pdb|1LXT|B Chain B, Structure Of Phosphotransferase Phosphoglucomutase From
Rabbit
pdb|1C47|A Chain A, Binding Driven Structural Changes In Crystaline
Phosphoglucomutase Associated With Chemical Reaction
pdb|1C47|B Chain B, Binding Driven Structural Changes In Crystaline
Phosphoglucomutase Associated With Chemical Reaction
pdb|1C4G|A Chain A, Phosphoglucomutase Vanadate Based Transition State Analog
Complex
pdb|1C4G|B Chain B, Phosphoglucomutase Vanadate Based Transition State Analog
Complex
Length = 561
Score = 123 bits (308), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 57/97 (58%), Positives = 72/97 (74%), Gaps = 3/97 (3%)
Query: 7 FQVDVIDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINSMHGVTGPYVKKIFLEE 66
F V+++DSVE Y +++ IFDF L+ L+ SG K+ I++MHGV GPYVKKI EE
Sbjct: 183 FTVEIVDSVEAYATMLRNIFDFNALKELL---SGPNRLKIRIDAMHGVVGPYVKKILCEE 239
Query: 67 LGAQPDNAVNTTPLPDFGGHHPDPNLTYAADLVQAMQ 103
LGA ++AVN PL DFGGHHPDPNLTYAADLV+ M+
Sbjct: 240 LGAPANSAVNCVPLEDFGGHHPDPNLTYAADLVETMK 276
>pdb|1JDY|A Chain A, Rabbit Muscle Phosphoglucomutase
pdb|1JDY|B Chain B, Rabbit Muscle Phosphoglucomutase
pdb|1VKL|A Chain A, Rabbit Muscle Phosphoglucomutase
pdb|1VKL|B Chain B, Rabbit Muscle Phosphoglucomutase
pdb|3PMG|A Chain A, Structure Of Rabbit Muscle Phosphoglucomutase At 2.4
Angstroms Resolution. Use Of Freezing Point Depressant
And Reduced Temperature To Enhance Diffractivity
pdb|3PMG|B Chain B, Structure Of Rabbit Muscle Phosphoglucomutase At 2.4
Angstroms Resolution. Use Of Freezing Point Depressant
And Reduced Temperature To Enhance Diffractivity
Length = 561
Score = 123 bits (308), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 57/97 (58%), Positives = 72/97 (74%), Gaps = 3/97 (3%)
Query: 7 FQVDVIDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINSMHGVTGPYVKKIFLEE 66
F V+++DSVE Y +++ IFDF L+ L+ SG K+ I++MHGV GPYVKKI EE
Sbjct: 183 FTVEIVDSVEAYATMLRNIFDFNALKELL---SGPNRLKIRIDAMHGVVGPYVKKILCEE 239
Query: 67 LGAQPDNAVNTTPLPDFGGHHPDPNLTYAADLVQAMQ 103
LGA ++AVN PL DFGGHHPDPNLTYAADLV+ M+
Sbjct: 240 LGAPANSAVNCVPLEDFGGHHPDPNLTYAADLVETMK 276
>pdb|1KFI|A Chain A, Crystal Structure Of The Exocytosis-Sensitive
Phosphoprotein, Pp63PARAFUSIN (PHOSPHOGLUCOMUTASE) FROM
Paramecium
pdb|1KFI|B Chain B, Crystal Structure Of The Exocytosis-Sensitive
Phosphoprotein, Pp63PARAFUSIN (PHOSPHOGLUCOMUTASE) FROM
Paramecium
pdb|1KFQ|A Chain A, Crystal Structure Of Exocytosis-Sensitive Phosphoprotein,
Pp63PARAFUSIN (PHOSPHOGLUCOMUTSE) FROM PARAMECIUM. OPEN
Form
pdb|1KFQ|B Chain B, Crystal Structure Of Exocytosis-Sensitive Phosphoprotein,
Pp63PARAFUSIN (PHOSPHOGLUCOMUTSE) FROM PARAMECIUM. OPEN
Form
Length = 572
Score = 94.7 bits (234), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 46/101 (45%), Positives = 63/101 (62%), Gaps = 4/101 (3%)
Query: 2 VDGAQFQVDVIDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINSMHGVTGPYVKK 61
++ + F+V V+D+V+ Y QLM+++FDF L+KG F + MHGV GPY K
Sbjct: 193 LEKSHFEVKVVDTVQDYTQLMQKLFDF----DLLKGLFSNKDFSFRFDGMHGVAGPYAKH 248
Query: 62 IFLEELGAQPDNAVNTTPLPDFGGHHPDPNLTYAADLVQAM 102
IF LG ++ +N P DFGG HPDPNLTYA DLV+ +
Sbjct: 249 IFGTLLGCSKESLLNCDPSEDFGGGHPDPNLTYAHDLVELL 289
>pdb|3UW2|A Chain A, X-Ray Crystal Structure Of
PhosphoglucomutasePHOSPHOMANNOMUTASE Family Protein
(Bth_i1489)from Burkholderia Thailandensis
Length = 485
Score = 30.8 bits (68), Expect = 0.18, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 14/54 (25%)
Query: 43 PFKLLINSMHGVTGPYVKKIF------LEELGAQPDNAVNTTPLPDFGGHHPDP 90
P KL++++ +GV GP ++F L EL D +F HHPDP
Sbjct: 194 PLKLVVDAGNGVAGPLATRLFKALGCELVELFTDIDG--------NFPNHHPDP 239
>pdb|1RD4|A Chain A, An Allosteric Inhibitor Of Lfa-1 Bound To Its I-Domain
pdb|1RD4|B Chain B, An Allosteric Inhibitor Of Lfa-1 Bound To Its I-Domain
pdb|1RD4|C Chain C, An Allosteric Inhibitor Of Lfa-1 Bound To Its I-Domain
pdb|1RD4|D Chain D, An Allosteric Inhibitor Of Lfa-1 Bound To Its I-Domain
Length = 191
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 46 LLINSMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDPNLTYAADLVQ 100
LL+ + G ++F EELGA+PD + D G N+ A D+++
Sbjct: 83 LLLTNTFGAINYVATEVFREELGARPDATKVLIIITD-GEATDSGNIDAAKDIIR 136
>pdb|1MQ9|A Chain A, Crystal Structure Of High Affinity Alphal I Domain With
Ligand Mimetic Crystal Contact
pdb|1MQA|A Chain A, Crystal Structure Of High Affinity Alphal I Domain In The
Absence Of Ligand Or Metal
Length = 180
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 46 LLINSMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDPNLTYAADLVQ 100
LL+ + G ++F EELGA+PD + D G N+ A D+++
Sbjct: 77 LLLTNTFGAINYVATEVFREELGARPDATKVLIIITD-GEATDSGNIDAAKDIIR 130
>pdb|1MQ8|B Chain B, Crystal Structure Of Alphal I Domain In Complex With
Icam-1
pdb|1MQ8|D Chain D, Crystal Structure Of Alphal I Domain In Complex With
Icam-1
Length = 177
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 46 LLINSMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDPNLTYAADLVQ 100
LL+ + G ++F EELGA+PD + D G N+ A D+++
Sbjct: 74 LLLTNTFGAINYVATEVFREELGARPDATKVLIIITD-GEATDSGNIDAAKDIIR 127
>pdb|1XDD|A Chain A, X-ray Structure Of Lfa-1 I-domain In Complex With Lfa703
At 2.2a Resolution
pdb|1XDD|B Chain B, X-ray Structure Of Lfa-1 I-domain In Complex With Lfa703
At 2.2a Resolution
pdb|1XDG|A Chain A, X-ray Structure Of Lfa-1 I-domain In Complex With Lfa878
At 2.1a Resolution
pdb|1XDG|B Chain B, X-ray Structure Of Lfa-1 I-domain In Complex With Lfa878
At 2.1a Resolution
pdb|1XUO|A Chain A, X-ray Structure Of Lfa-1 I-domain Bound To A
1,4-diazepane- 2,5-dione Inhibitor At 1.8a Resolution
pdb|1XUO|B Chain B, X-ray Structure Of Lfa-1 I-domain Bound To A
1,4-diazepane- 2,5-dione Inhibitor At 1.8a Resolution
pdb|1DGQ|A Chain A, Nmr Solution Structure Of The Inserted Domain Of Human
Leukocyte Function Associated Antigen-1
Length = 188
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 46 LLINSMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDPNLTYAADLVQ 100
LL+ + G ++F EELGA+PD + D G N+ A D+++
Sbjct: 80 LLLTNTFGAINYVATEVFREELGARPDATKVLIIITD-GEATDSGNIDAAKDIIR 133
>pdb|1LFA|A Chain A, Cd11a I-Domain With Bound Mn++
pdb|1LFA|B Chain B, Cd11a I-Domain With Bound Mn++
pdb|1ZOO|A Chain A, Cd11a I-Domain With Bound Magnesium Ion
pdb|1ZOO|B Chain B, Cd11a I-Domain With Bound Magnesium Ion
pdb|1ZOP|A Chain A, Cd11a I-Domain With Bound Magnesium Ion
pdb|1ZOP|B Chain B, Cd11a I-Domain With Bound Magnesium Ion
pdb|1ZON|A Chain A, Cd11a I-Domain Without Bound Cation
Length = 187
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 46 LLINSMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDPNLTYAADLVQ 100
LL+ + G ++F EELGA+PD + D G N+ A D+++
Sbjct: 79 LLLTNTFGAINYVATEVFREELGARPDATKVLIIITD-GEATDSGNIDAAKDIIR 132
>pdb|1CQP|A Chain A, Crystal Structure Analysis Of The Complex Lfa-1 (Cd11a) I-
Domain LOVASTATIN AT 2.6 A RESOLUTION
pdb|1CQP|B Chain B, Crystal Structure Analysis Of The Complex Lfa-1 (Cd11a) I-
Domain LOVASTATIN AT 2.6 A RESOLUTION
pdb|3BQM|B Chain B, Lfa-1 I Domain Bound To Inhibitors
pdb|3BQM|C Chain C, Lfa-1 I Domain Bound To Inhibitors
pdb|3BQN|B Chain B, Lfa-1 I Domain Bound To Inhibitors
pdb|3BQN|C Chain C, Lfa-1 I Domain Bound To Inhibitors
Length = 182
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 46 LLINSMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDPNLTYAADLVQ 100
LL+ + G ++F EELGA+PD + D G N+ A D+++
Sbjct: 76 LLLTNTFGAINYVATEVFREELGARPDATKVLIIITD-GEATDSGNIDAAKDIIR 129
>pdb|1MJN|A Chain A, Crystal Structure Of The Intermediate Affinity Al I Domain
M
Length = 179
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 46 LLINSMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDPNLTYAADLVQ 100
LL+ + G ++F EELGA+PD + D G N+ A D+++
Sbjct: 76 LLLTNTFGAINYVATEVFREELGARPDATKVLIIITD-GEATDSGNIDAAKDIIR 129
>pdb|3EOA|I Chain I, Crystal Structure The Fab Fragment Of Efalizumab In
Complex With Lfa-1 I Domain, Form I
pdb|3EOA|J Chain J, Crystal Structure The Fab Fragment Of Efalizumab In
Complex With Lfa-1 I Domain, Form I
pdb|3EOB|I Chain I, Crystal Structure The Fab Fragment Of Efalizumab In
Complex With Lfa-1 I Domain, Form Ii
pdb|3EOB|J Chain J, Crystal Structure The Fab Fragment Of Efalizumab In
Complex With Lfa-1 I Domain, Form Ii
Length = 181
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 46 LLINSMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDPNLTYAADLVQ 100
LL+ + G ++F EELGA+PD + D G N+ A D+++
Sbjct: 76 LLLTNTFGAINYVATEVFREELGARPDATKVLIIITD-GEATDSGNIDAAKDIIR 129
>pdb|3E2M|A Chain A, Lfa-1 I Domain Bound To Inhibitors
pdb|3E2M|B Chain B, Lfa-1 I Domain Bound To Inhibitors
Length = 185
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 46 LLINSMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDPNLTYAADLVQ 100
LL+ + G ++F EELGA+PD + D G N+ A D+++
Sbjct: 79 LLLTNTFGAINYVATEVFREELGARPDATKVLIIITD-GEATDSGNIDAAKDIIR 132
>pdb|1T0P|A Chain A, Structural Basis Of Icam Recognition By Integrin
Alpahlbeta2 Revealed In The Complex Structure Of Binding
Domains Of Icam-3 And Alphalbeta2 At 1.65 A
Length = 175
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 46 LLINSMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDPNLTYAADLVQ 100
LL+ + G ++F EELGA+PD + D G N+ A D+++
Sbjct: 77 LLLTNTFGAINYVATEVFREELGARPDATKVLIIITD-GEATDSGNIDAAKDIIR 130
>pdb|3F74|A Chain A, Crystal Structure Of Wild Type Lfa1 I Domain
pdb|3F74|B Chain B, Crystal Structure Of Wild Type Lfa1 I Domain
pdb|3F74|C Chain C, Crystal Structure Of Wild Type Lfa1 I Domain
pdb|3F78|A Chain A, Crystal Structure Of Wild Type Lfa1 I Domain Complexed
With Isoflurane
pdb|3F78|B Chain B, Crystal Structure Of Wild Type Lfa1 I Domain Complexed
With Isoflurane
pdb|3F78|C Chain C, Crystal Structure Of Wild Type Lfa1 I Domain Complexed
With Isoflurane
Length = 181
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 46 LLINSMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDPNLTYAADLVQ 100
LL+ + G ++F EELGA+PD + D G N+ A D+++
Sbjct: 77 LLLTNTFGAINYVATEVFREELGARPDATKVLIIITD-GEATDSGNIDAAKDIIR 130
>pdb|3HI6|A Chain A, Crystal Structure Of Intermediate Affinity I Domain Of
Integrin Lfa-1 With The Fab Fragment Of Its Antibody
Al-57
pdb|3HI6|B Chain B, Crystal Structure Of Intermediate Affinity I Domain Of
Integrin Lfa-1 With The Fab Fragment Of Its Antibody
Al-57
Length = 180
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 46 LLINSMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDPNLTYAADLVQ 100
LL+ + G ++F EELGA+PD + D G N+ A D+++
Sbjct: 76 LLLTNTFGAINYVATEVFREELGARPDATKVLIIITD-GEATDSGNIDAAKDIIR 129
>pdb|3TCX|B Chain B, Structure Of Engineered Single Domain Icam-1 D1 With
High-Affinity Al Integrin I Domain Of Native C-Terminal
Helix Conformation
pdb|3TCX|D Chain D, Structure Of Engineered Single Domain Icam-1 D1 With
High-Affinity Al Integrin I Domain Of Native C-Terminal
Helix Conformation
pdb|3TCX|F Chain F, Structure Of Engineered Single Domain Icam-1 D1 With
High-Affinity Al Integrin I Domain Of Native C-Terminal
Helix Conformation
pdb|3TCX|H Chain H, Structure Of Engineered Single Domain Icam-1 D1 With
High-Affinity Al Integrin I Domain Of Native C-Terminal
Helix Conformation
pdb|3TCX|J Chain J, Structure Of Engineered Single Domain Icam-1 D1 With
High-Affinity Al Integrin I Domain Of Native C-Terminal
Helix Conformation
pdb|3TCX|L Chain L, Structure Of Engineered Single Domain Icam-1 D1 With
High-Affinity Al Integrin I Domain Of Native C-Terminal
Helix Conformation
pdb|3TCX|N Chain N, Structure Of Engineered Single Domain Icam-1 D1 With
High-Affinity Al Integrin I Domain Of Native C-Terminal
Helix Conformation
pdb|3TCX|P Chain P, Structure Of Engineered Single Domain Icam-1 D1 With
High-Affinity Al Integrin I Domain Of Native C-Terminal
Helix Conformation
pdb|3TCX|R Chain R, Structure Of Engineered Single Domain Icam-1 D1 With
High-Affinity Al Integrin I Domain Of Native C-Terminal
Helix Conformation
pdb|3TCX|T Chain T, Structure Of Engineered Single Domain Icam-1 D1 With
High-Affinity Al Integrin I Domain Of Native C-Terminal
Helix Conformation
pdb|3TCX|V Chain V, Structure Of Engineered Single Domain Icam-1 D1 With
High-Affinity Al Integrin I Domain Of Native C-Terminal
Helix Conformation
pdb|3TCX|X Chain X, Structure Of Engineered Single Domain Icam-1 D1 With
High-Affinity Al Integrin I Domain Of Native C-Terminal
Helix Conformation
pdb|3TCX|Z Chain Z, Structure Of Engineered Single Domain Icam-1 D1 With
High-Affinity Al Integrin I Domain Of Native C-Terminal
Helix Conformation
pdb|3TCX|BB Chain b, Structure Of Engineered Single Domain Icam-1 D1 With
High-Affinity Al Integrin I Domain Of Native C-Terminal
Helix Conformation
Length = 180
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 46 LLINSMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDPNLTYAADLVQ 100
LL+ + G ++F EELGA+PD + D G N+ A D+++
Sbjct: 76 LLLTNTFGAINYVATEVFREELGARPDATKVLIIITD-GEATDSGNIDAAKDIIR 129
>pdb|3BN3|A Chain A, Crystal Structure Of Icam-5 In Complex With Al I Domain
Length = 180
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 46 LLINSMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDPNLTYAADLVQ 100
LL+ + G ++F EELGA+PD + D G N+ A D+++
Sbjct: 76 LLLTNTFGAINYVATEVFREELGARPDATKVLIIITD-GEATDSGNIDAAKDIIR 129
>pdb|2ICA|A Chain A, Cd11a (Lfa1) I-Domain Complexed With Bms-587101 Aka
5-[(5s,
9r)-9-(4-Cyanophenyl)-3-(3,5-Dichlorophenyl)-1-Methyl-2,
4- Dioxo-1,3,7-Triazaspiro [4.4]non-7-Yl]methyl]-3-
Thiophenecarboxylicacid
pdb|2O7N|A Chain A, Cd11a (Lfa1) I-Domain Complexed With 7a-[(4-Cyanophenyl)
Methyl]-6-(3,5-Dichlorophenyl)-5-Oxo-2,3,5,
7a-Tetrahydro- 1h-Pyrrolo[1,2-A]pyrrole-7-Carbonitrile
pdb|3M6F|A Chain A, Cd11a I-Domain Complexed With
6-((5s,9r)-9-(4-Cyanophenyl)-3
Dichlorophenyl)-1-Methyl-2,4-Dioxo-1,3,7-
Triazaspiro[4.4]n Nicotinic Acid
Length = 183
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 46 LLINSMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDPNLTYAADLVQ 100
LL+ + G ++F EELGA+PD + D G N+ A D+++
Sbjct: 79 LLLTNTFGAINYVATEVFREELGARPDATKVLIIITD-GEATDSGNIDAAKDIIR 132
>pdb|1WUU|A Chain A, Crystal Structure Of Human Galactokinase Complexed With
Mgamppnp And Galactose
pdb|1WUU|B Chain B, Crystal Structure Of Human Galactokinase Complexed With
Mgamppnp And Galactose
pdb|1WUU|C Chain C, Crystal Structure Of Human Galactokinase Complexed With
Mgamppnp And Galactose
pdb|1WUU|D Chain D, Crystal Structure Of Human Galactokinase Complexed With
Mgamppnp And Galactose
Length = 399
Score = 26.6 bits (57), Expect = 4.3, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 60 KKIFLEELGAQPDNAVNTTPLPDFGGHHPDPN 91
++ F EE GA+P+ AV+ + G H D N
Sbjct: 24 RRAFREEFGAEPELAVSAPGRVNLIGEHTDYN 55
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.139 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,457,933
Number of Sequences: 62578
Number of extensions: 129071
Number of successful extensions: 361
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 308
Number of HSP's gapped (non-prelim): 50
length of query: 103
length of database: 14,973,337
effective HSP length: 68
effective length of query: 35
effective length of database: 10,718,033
effective search space: 375131155
effective search space used: 375131155
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)