Query psy5980
Match_columns 103
No_of_seqs 143 out of 1008
Neff 6.6
Searched_HMMs 46136
Date Fri Aug 16 23:31:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5980.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5980hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02879 PGM_PMM_II: Phosphogl 99.8 3.8E-20 8.3E-25 121.1 7.3 77 16-102 1-79 (104)
2 cd05800 PGM_like2 This PGM-lik 99.8 1.9E-18 4.1E-23 137.8 9.9 88 6-103 144-231 (461)
3 PRK09542 manB phosphomannomuta 99.8 1.6E-18 3.5E-23 138.1 8.8 87 5-103 136-223 (445)
4 cd03085 PGM1 Phosphoglucomutas 99.8 4E-18 8.7E-23 139.4 10.5 89 10-103 178-267 (548)
5 cd03084 phosphohexomutase The 99.7 6.2E-18 1.3E-22 130.8 9.6 85 9-103 86-171 (355)
6 KOG0625|consensus 99.7 9.8E-18 2.1E-22 133.4 8.9 95 5-102 178-272 (558)
7 PRK15414 phosphomannomutase Cp 99.7 2.2E-17 4.8E-22 132.0 8.9 87 6-103 143-234 (456)
8 PLN02307 phosphoglucomutase 99.7 3.5E-17 7.5E-22 134.8 10.2 88 10-102 195-283 (579)
9 cd03087 PGM_like1 This archaea 99.7 2.9E-17 6.2E-22 130.3 9.3 85 7-103 137-222 (439)
10 cd03089 PMM_PGM The phosphoman 99.7 2.8E-17 6.1E-22 130.6 9.2 86 5-103 136-222 (443)
11 PLN02371 phosphoglucosamine mu 99.7 5.7E-17 1.2E-21 133.4 9.0 92 5-103 226-323 (583)
12 cd05803 PGM_like4 This PGM-lik 99.7 6E-17 1.3E-21 128.9 8.7 86 7-103 142-230 (445)
13 PRK14321 glmM phosphoglucosami 99.7 2E-16 4.3E-21 126.3 8.8 82 7-103 141-222 (449)
14 COG1109 {ManB} Phosphomannomut 99.7 1.6E-16 3.5E-21 127.4 7.9 88 5-103 148-236 (464)
15 cd05801 PGM_like3 This bacteri 99.7 3.7E-16 8E-21 126.9 9.7 86 7-102 182-276 (522)
16 TIGR01132 pgm phosphoglucomuta 99.7 3.8E-16 8.2E-21 127.4 9.1 85 6-100 198-291 (543)
17 cd05799 PGM2 This CD includes 99.6 1.1E-15 2.4E-20 122.7 8.3 88 7-103 155-249 (487)
18 PRK07564 phosphoglucomutase; V 99.6 2.5E-15 5.5E-20 122.6 9.9 84 7-100 198-290 (543)
19 PRK14315 glmM phosphoglucosami 99.6 1.9E-15 4E-20 120.6 8.0 84 6-102 147-231 (448)
20 PRK14317 glmM phosphoglucosami 99.6 2.2E-15 4.9E-20 120.7 8.4 84 7-103 160-244 (465)
21 PRK10887 glmM phosphoglucosami 99.6 2.8E-15 6.2E-20 119.4 8.5 86 5-103 141-227 (443)
22 cd05805 MPG1_transferase GTP-m 99.6 2.8E-15 6.1E-20 119.1 8.1 86 7-103 139-225 (441)
23 cd05802 GlmM GlmM is a bacteri 99.6 3.5E-15 7.6E-20 118.4 8.5 84 6-103 141-225 (434)
24 PRK14324 glmM phosphoglucosami 99.6 3E-15 6.4E-20 119.5 7.9 83 7-102 147-230 (446)
25 PRK14314 glmM phosphoglucosami 99.6 6.8E-15 1.5E-19 117.4 8.2 83 7-102 149-232 (450)
26 TIGR01455 glmM phosphoglucosam 99.6 9.5E-15 2.1E-19 116.3 8.2 86 5-103 142-228 (443)
27 PTZ00150 phosphoglucomutase-2- 99.6 1E-14 2.2E-19 120.0 7.8 82 12-102 205-291 (584)
28 PRK14316 glmM phosphoglucosami 99.5 3.6E-14 7.7E-19 113.0 8.9 81 7-102 147-228 (448)
29 PRK14318 glmM phosphoglucosami 99.5 2.7E-14 5.8E-19 113.9 7.7 82 7-103 149-231 (448)
30 PRK14320 glmM phosphoglucosami 99.5 4.2E-14 9.1E-19 112.7 8.4 84 6-103 144-228 (443)
31 PRK14322 glmM phosphoglucosami 99.5 5E-14 1.1E-18 111.8 8.0 83 6-102 137-220 (429)
32 PRK14319 glmM phosphoglucosami 99.5 6.5E-14 1.4E-18 111.2 8.3 82 7-102 135-217 (430)
33 PRK14323 glmM phosphoglucosami 99.5 7.5E-14 1.6E-18 111.0 8.3 82 6-103 147-229 (440)
34 cd03088 ManB ManB is a bacteri 99.4 2.7E-13 5.8E-18 108.6 7.8 83 7-103 139-222 (459)
35 cd03086 PGM3 PGM3 (phosphogluc 99.4 5.4E-13 1.2E-17 108.8 6.5 78 15-103 162-246 (513)
36 COG0033 Pgm Phosphoglucomutase 99.3 9E-12 1.9E-16 100.1 6.0 77 7-91 176-252 (524)
37 KOG1220|consensus 98.6 1.5E-07 3.2E-12 77.8 8.1 80 15-100 224-307 (607)
38 PTZ00302 N-acetylglucosamine-p 98.6 1E-07 2.2E-12 79.2 5.4 83 15-103 214-305 (585)
39 PLN02895 phosphoacetylglucosam 98.5 2.5E-07 5.4E-12 76.7 5.7 79 15-99 184-266 (562)
40 KOG2537|consensus 84.8 1.9 4.1E-05 36.0 4.7 62 15-80 186-248 (539)
41 PRK13396 3-deoxy-7-phosphohept 84.1 4.5 9.8E-05 32.2 6.5 59 43-102 271-334 (352)
42 PRK08673 3-deoxy-7-phosphohept 81.9 7.2 0.00016 30.8 6.8 59 43-102 262-325 (335)
43 PF03141 Methyltransf_29: Puta 78.1 3.6 7.8E-05 34.3 4.1 44 11-64 94-137 (506)
44 PRK13398 3-deoxy-7-phosphohept 75.0 11 0.00023 28.8 5.7 59 43-102 196-259 (266)
45 TIGR01361 DAHP_synth_Bsub phos 68.4 32 0.0007 25.9 7.0 59 43-102 194-257 (260)
46 TIGR01362 KDO8P_synth 3-deoxy- 65.1 3.4 7.3E-05 31.7 1.1 11 43-53 175-185 (258)
47 PRK13397 3-deoxy-7-phosphohept 64.3 37 0.0008 25.8 6.6 57 43-102 184-247 (250)
48 PF01170 UPF0020: Putative RNA 64.0 8.3 0.00018 27.2 2.9 20 45-64 30-49 (179)
49 PRK05198 2-dehydro-3-deoxyphos 63.8 3.3 7.2E-05 31.8 0.9 11 43-53 183-193 (264)
50 PRK03525 crotonobetainyl-CoA:c 57.7 15 0.00032 29.5 3.6 32 43-77 14-45 (405)
51 PLN03033 2-dehydro-3-deoxyphos 55.2 5.9 0.00013 30.8 1.0 11 43-53 189-199 (290)
52 PF07693 KAP_NTPase: KAP famil 52.1 52 0.0011 24.5 5.6 75 16-101 2-79 (325)
53 COG2022 ThiG Uncharacterized e 48.5 36 0.00079 26.1 4.2 33 43-79 182-214 (262)
54 PRK00050 16S rRNA m(4)C1402 me 47.6 34 0.00073 26.5 4.1 32 45-79 21-54 (296)
55 COG0860 AmiC N-acetylmuramoyl- 46.7 13 0.00028 27.7 1.6 12 43-54 42-53 (231)
56 PRK12457 2-dehydro-3-deoxyphos 45.5 17 0.00036 28.3 2.1 11 43-53 191-201 (281)
57 PRK10319 N-acetylmuramoyl-l-al 44.2 17 0.00036 28.1 1.9 11 43-53 56-66 (287)
58 PRK07308 flavodoxin; Validated 42.2 83 0.0018 20.9 5.0 22 43-64 3-24 (146)
59 KOG1622|consensus 41.5 65 0.0014 27.1 5.0 53 44-97 231-283 (552)
60 PRK12595 bifunctional 3-deoxy- 41.0 1.3E+02 0.0029 23.8 6.6 57 43-102 287-350 (360)
61 PRK10431 N-acetylmuramoyl-l-al 40.8 18 0.00039 29.7 1.7 11 43-53 191-201 (445)
62 TIGR02883 spore_cwlD N-acetylm 40.6 18 0.00038 25.7 1.5 9 45-53 2-10 (189)
63 PRK06153 hypothetical protein; 40.4 75 0.0016 25.9 5.1 53 15-75 154-206 (393)
64 COG0426 FpaA Uncharacterized f 40.3 71 0.0015 25.9 5.0 51 14-79 233-285 (388)
65 PRK06756 flavodoxin; Provision 39.8 95 0.0021 20.6 5.0 22 43-64 3-24 (148)
66 PF10642 Tom5: Mitochondrial i 39.3 40 0.00087 19.4 2.5 17 82-98 1-17 (49)
67 COG0505 CarA Carbamoylphosphat 38.6 53 0.0011 26.5 3.9 35 44-83 181-225 (368)
68 PRK05398 formyl-coenzyme A tra 38.3 31 0.00068 27.7 2.7 32 43-77 7-38 (416)
69 PF01795 Methyltransf_5: MraW 37.0 66 0.0014 25.2 4.2 35 44-80 21-55 (310)
70 PRK11430 putative CoA-transfer 35.9 49 0.0011 26.3 3.4 32 43-77 12-43 (381)
71 COG2876 AroA 3-deoxy-D-arabino 35.8 77 0.0017 24.7 4.3 17 43-59 214-230 (286)
72 PF06325 PrmA: Ribosomal prote 35.3 64 0.0014 24.9 3.9 30 44-76 162-191 (295)
73 KOG1198|consensus 35.2 1E+02 0.0022 24.2 5.1 59 43-102 225-307 (347)
74 TIGR03253 oxalate_frc formyl-C 34.8 40 0.00087 27.0 2.8 31 44-77 7-37 (415)
75 PF01927 Mut7-C: Mut7-C RNAse 33.9 62 0.0013 22.1 3.3 27 44-76 1-27 (147)
76 KOG1500|consensus 32.5 87 0.0019 25.7 4.3 31 43-76 177-207 (517)
77 cd02189 delta_tubulin The tubu 32.3 58 0.0013 26.5 3.4 24 43-67 128-151 (446)
78 PF05222 AlaDh_PNT_N: Alanine 32.2 59 0.0013 22.0 3.0 29 43-73 27-55 (136)
79 PLN02790 transketolase 31.8 39 0.00084 28.9 2.4 43 43-90 47-94 (654)
80 cd00286 Tubulin_FtsZ Tubulin/F 30.7 88 0.0019 23.9 4.0 22 43-64 91-112 (328)
81 PF05690 ThiG: Thiazole biosyn 29.8 67 0.0015 24.6 3.1 40 43-91 175-214 (247)
82 PF13679 Methyltransf_32: Meth 29.4 1.4E+02 0.0031 19.8 4.5 33 43-78 25-62 (141)
83 TIGR03438 probable methyltrans 29.1 85 0.0018 23.8 3.7 21 45-67 65-85 (301)
84 CHL00162 thiG thiamin biosynth 28.3 2E+02 0.0043 22.3 5.5 39 43-90 189-227 (267)
85 cd02188 gamma_tubulin Gamma-tu 27.6 73 0.0016 25.9 3.2 24 43-67 132-155 (431)
86 PF05891 Methyltransf_PK: AdoM 27.5 81 0.0018 23.6 3.2 21 43-64 55-75 (218)
87 PF01520 Amidase_3: N-acetylmu 27.3 22 0.00047 24.3 0.1 9 46-54 1-9 (175)
88 KOG3178|consensus 27.0 69 0.0015 25.6 2.9 24 43-68 177-200 (342)
89 PRK11524 putative methyltransf 26.8 49 0.0011 24.9 2.0 24 44-70 209-232 (284)
90 COG1041 Predicted DNA modifica 26.8 43 0.00093 26.8 1.7 19 45-63 199-217 (347)
91 TIGR00034 aroFGH phospho-2-deh 26.5 46 0.001 26.6 1.8 13 44-56 255-267 (344)
92 COG2518 Pcm Protein-L-isoaspar 26.4 56 0.0012 24.2 2.2 21 53-75 80-100 (209)
93 cd02696 MurNAc-LAA N-acetylmur 26.4 35 0.00077 23.2 1.1 11 45-55 1-11 (172)
94 TIGR00758 UDG_fam4 uracil-DNA 26.2 2.3E+02 0.005 19.7 5.4 19 51-70 42-60 (173)
95 COG2453 CDC14 Predicted protei 26.1 80 0.0017 22.2 2.9 27 43-70 105-134 (180)
96 PF10994 DUF2817: Protein of u 25.3 63 0.0014 25.6 2.4 27 75-101 175-202 (341)
97 PF09445 Methyltransf_15: RNA 24.7 94 0.002 22.0 3.0 29 45-77 1-29 (163)
98 COG1979 Uncharacterized oxidor 24.6 2.5E+02 0.0054 22.8 5.6 51 44-103 30-82 (384)
99 PRK11840 bifunctional sulfur c 24.6 2.1E+02 0.0045 22.8 5.1 52 15-91 237-288 (326)
100 PF01555 N6_N4_Mtase: DNA meth 24.6 74 0.0016 21.9 2.4 22 45-69 193-214 (231)
101 PRK09261 phospho-2-dehydro-3-d 24.5 41 0.00088 26.9 1.2 14 43-56 260-273 (349)
102 PRK04176 ribulose-1,5-biphosph 24.4 1.7E+02 0.0037 21.7 4.5 46 14-78 12-57 (257)
103 PF08859 DGC: DGC domain; Int 24.3 2.1E+02 0.0046 18.7 6.2 56 43-103 52-108 (110)
104 PRK10310 PTS system galactitol 24.2 1.8E+02 0.004 18.2 4.1 27 43-70 2-33 (94)
105 COG2264 PrmA Ribosomal protein 23.7 1.9E+02 0.0041 22.6 4.7 28 43-73 162-189 (300)
106 KOG0025|consensus 23.1 1.3E+02 0.0027 24.1 3.6 54 11-78 142-195 (354)
107 PRK08317 hypothetical protein; 22.8 2.4E+02 0.0053 19.4 4.9 36 15-64 4-39 (241)
108 COG2263 Predicted RNA methylas 22.2 1.1E+02 0.0023 22.7 2.9 30 43-75 45-74 (198)
109 PF00793 DAHP_synth_1: DAHP sy 22.0 41 0.0009 25.6 0.8 16 43-58 194-209 (270)
110 cd06059 Tubulin The tubulin su 21.8 1E+02 0.0022 24.3 3.0 22 43-64 91-112 (382)
111 PRK12755 phospho-2-dehydro-3-d 21.8 48 0.001 26.6 1.1 15 43-57 261-275 (353)
112 cd01525 RHOD_Kc Member of the 21.7 2E+02 0.0044 17.4 4.1 31 44-75 66-96 (105)
113 PRK04182 cytidylate kinase; Pr 21.5 1.9E+02 0.0042 19.2 4.0 26 45-70 2-27 (180)
114 TIGR00017 cmk cytidylate kinas 20.6 1.7E+02 0.0037 21.2 3.8 28 43-70 2-29 (217)
115 TIGR02173 cyt_kin_arch cytidyl 20.2 2.1E+02 0.0046 18.8 4.0 26 45-70 2-27 (171)
116 PLN02244 tocopherol O-methyltr 20.1 2.2E+02 0.0049 21.9 4.5 23 45-69 120-142 (340)
117 TIGR00006 S-adenosyl-methyltra 20.1 2.2E+02 0.0048 22.2 4.4 33 45-79 22-54 (305)
No 1
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=99.82 E-value=3.8e-20 Score=121.14 Aligned_cols=77 Identities=22% Similarity=0.496 Sum_probs=69.1
Q ss_pred HHHHHHHHhhcC-chhHHhhhhCCCCCCCcEEEEeCCCCcchHHHHHHHHHhcCCCceeeecCccCCCCCC-CCCCCcHH
Q psy5980 16 EVYLQLMKEIFD-FPKLQSLIKGSSGRPPFKLLINSMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGG-HHPDPNLT 93 (103)
Q Consensus 16 ~~Yi~~l~~~id-~~~i~~~~~~~~~~~~lkVvvD~~nGa~~~~~~~ll~~~lG~~~v~~i~~~~Dg~F~g-~~PeP~~~ 93 (103)
+.|+++|.+.++ .+.+++. ++||+||||||+|+.+++.+|+ ++|++ ++.+|+.+||.||+ +.|+|.++
T Consensus 1 e~Y~~~l~~~~~~~~~~~~~--------~~kivvD~~~G~~~~~~~~ll~-~lg~~-~~~~n~~~d~~f~~~~~p~p~~~ 70 (104)
T PF02879_consen 1 EAYIESLLSFIDILEAIKKS--------GLKIVVDCMNGAGSDILPRLLE-RLGCD-VIELNCDPDPDFPNQHAPNPEEE 70 (104)
T ss_dssp HHHHHHHHHTSCHHHHHHHT--------TCEEEEE-TTSTTHHHHHHHHH-HTTCE-EEEESSS-STTGTTTSTSSTSTT
T ss_pred ChHHHHHhhhccchhhcccC--------CCEEEEECCCCHHHHHHHHHHH-HcCCc-EEEEecccccccccccccccccc
Confidence 589999999999 8888765 8999999999999999999999 99995 88999999999999 99999989
Q ss_pred HHHHHHHhh
Q psy5980 94 YAADLVQAM 102 (103)
Q Consensus 94 nL~~L~~~V 102 (103)
++..+++.|
T Consensus 71 ~l~~~~~~v 79 (104)
T PF02879_consen 71 SLQRLIKIV 79 (104)
T ss_dssp TTHHHHHHH
T ss_pred hhHHHHHHh
Confidence 999988776
No 2
>cd05800 PGM_like2 This PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily and is found in both archaea and bacteria. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four structural domains (subdomains) with a centrally located active site formed by four loops, one from each subdomain. All four subdomains are included in this alignment model.
Probab=99.77 E-value=1.9e-18 Score=137.79 Aligned_cols=88 Identities=20% Similarity=0.441 Sum_probs=79.9
Q ss_pred ceeEEEecChHHHHHHHHhhcCchhHHhhhhCCCCCCCcEEEEeCCCCcchHHHHHHHHHhcCCCceeeecCccCCCCCC
Q psy5980 6 QFQVDVIDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINSMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGG 85 (103)
Q Consensus 6 ~g~~~~~D~~~~Yi~~l~~~id~~~i~~~~~~~~~~~~lkVvvD~~nGa~~~~~~~ll~~~lG~~~v~~i~~~~Dg~F~g 85 (103)
.|.+...|..+.|+++|.+.+|.++|+.. ++|||+||+||+++.+++.+|+ +|||+ ++.+|+++||.||+
T Consensus 144 ~g~i~~~~~~~~Y~~~l~~~~~~~~i~~~--------~~kivvd~~~G~~~~~~~~il~-~lg~~-v~~~~~~~dg~F~~ 213 (461)
T cd05800 144 EGLIETIDPKPDYLEALRSLVDLEAIREA--------GLKVVVDPMYGAGAGYLEELLR-GAGVD-VEEIRAERDPLFGG 213 (461)
T ss_pred CCceeecCCHHHHHHHHHHHhChhhhhcC--------CceEEEeCCCCCcHHHHHHHHH-HcCCC-EEEeeCCcCCCCCC
Confidence 36677779999999999999998777644 7999999999999999999999 99995 89999999999999
Q ss_pred CCCCCcHHHHHHHHHhhC
Q psy5980 86 HHPDPNLTYAADLVQAMQ 103 (103)
Q Consensus 86 ~~PeP~~~nL~~L~~~V~ 103 (103)
++|+|.+++|.+|++.|+
T Consensus 214 ~~p~p~~~~l~~l~~~v~ 231 (461)
T cd05800 214 IPPEPIEKNLGELAEAVK 231 (461)
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999998874
No 3
>PRK09542 manB phosphomannomutase/phosphoglucomutase; Reviewed
Probab=99.76 E-value=1.6e-18 Score=138.11 Aligned_cols=87 Identities=17% Similarity=0.241 Sum_probs=78.0
Q ss_pred CceeEEEecChHHHHHHHHhhcCchhHHhhhhCCCCCCCcEEEEeCCCCcchHHHHHHHHHhcCCCceeeecCccCCCCC
Q psy5980 5 AQFQVDVIDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINSMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFG 84 (103)
Q Consensus 5 ~~g~~~~~D~~~~Yi~~l~~~id~~~i~~~~~~~~~~~~lkVvvD~~nGa~~~~~~~ll~~~lG~~~v~~i~~~~Dg~F~ 84 (103)
+.|.+...|+.+.|+++|++.+|.++++ ++|||+|||||+++.+++.+|+ +|||+ ++.+|+++||.||
T Consensus 136 ~~g~~~~~~~~~~Y~~~l~~~i~~~~i~----------~lkVvvd~~~Ga~~~~~~~ll~-~lg~~-vv~~~~~~d~~Fp 203 (445)
T PRK09542 136 PPGTVTERDVLADYAAFLRSLVDLSGIR----------PLKVAVDAGNGMGGHTVPAVLG-GLPIT-LLPLYFELDGTFP 203 (445)
T ss_pred CCCceeccChHHHHHHHHHHhcccccCC----------CCEEEEECCCCchhHHHHHHHH-hCCCE-EEEEecCcCCCCC
Confidence 4577777799999999999999876552 6999999999999999999999 99995 8899999999999
Q ss_pred CCCCCCc-HHHHHHHHHhhC
Q psy5980 85 GHHPDPN-LTYAADLVQAMQ 103 (103)
Q Consensus 85 g~~PeP~-~~nL~~L~~~V~ 103 (103)
+++|||. +++|.+|++.|+
T Consensus 204 ~~~p~P~~~~~l~~l~~~v~ 223 (445)
T PRK09542 204 NHEANPLDPANLVDLQAFVR 223 (445)
T ss_pred CCCcCCCCHHHHHHHHHHHH
Confidence 9999997 799999998774
No 4
>cd03085 PGM1 Phosphoglucomutase 1 (PGM1) catalyzes the bidirectional interconversion of glucose-1-phosphate (G-1-P) and glucose-6-phosphate (G-6-P) via a glucose 1,6-diphosphate intermediate, an important metabolic step in prokaryotes and eukaryotes. In one direction, G-1-P produced from sucrose catabolism is converted to G-6-P, the first intermediate in glycolysis. In the other direction, conversion of G-6-P to G-1-P generates a substrate for synthesis of UDP-glucose which is required for synthesis of a variety of cellular constituents including cell wall polymers and glycoproteins. The PGM1 family also includes a non-enzymatic PGM-related protein (PGM-RP) thought to play a structural role in eukaryotes, as well as pp63/parafusin, a phosphoglycoprotein that plays an important role in calcium-regulated exocytosis in ciliated protozoans. PGM1 belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl t
Probab=99.76 E-value=4e-18 Score=139.41 Aligned_cols=89 Identities=65% Similarity=1.107 Sum_probs=75.9
Q ss_pred EEecChHHHHHHHHhhcCchhHHhhh-hCCCCCCCcEEEEeCCCCcchHHHHHHHHHhcCCCceeeecCccCCCCCCCCC
Q psy5980 10 DVIDSVEVYLQLMKEIFDFPKLQSLI-KGSSGRPPFKLLINSMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHP 88 (103)
Q Consensus 10 ~~~D~~~~Yi~~l~~~id~~~i~~~~-~~~~~~~~lkVvvD~~nGa~~~~~~~ll~~~lG~~~v~~i~~~~Dg~F~g~~P 88 (103)
+..|..+.|+++|++.+|.++|++.. .+ ++|||+|||||+++.+++.+|++++||+.++.+|++|||.||+++|
T Consensus 178 ~~~d~~~~Yi~~l~~~v~~~~i~~~~~~~-----~lkVVvD~~nGag~~~~~~lL~~~LG~~~v~~i~~~pDg~Fp~~~P 252 (548)
T cd03085 178 EVIDSVEDYVELMKEIFDFDAIKKLLSRK-----GFKVRFDAMHGVTGPYAKKIFVEELGAPESSVVNCTPLPDFGGGHP 252 (548)
T ss_pred EEecCHHHHHHHHHhhhCHHHHhhhcccC-----CCEEEEeCCcchhHHHHHHHHHHhcCCCceEEEeCeeCCCCCCCCC
Confidence 44688999999999999987776310 01 7999999999999999999995379996346899999999999999
Q ss_pred CCcHHHHHHHHHhhC
Q psy5980 89 DPNLTYAADLVQAMQ 103 (103)
Q Consensus 89 eP~~~nL~~L~~~V~ 103 (103)
+|.+++|.+|++.|+
T Consensus 253 ~P~~~~l~~L~~~V~ 267 (548)
T cd03085 253 DPNLTYAKDLVELMK 267 (548)
T ss_pred CCcHHHHHHHHHHHh
Confidence 999999999998874
No 5
>cd03084 phosphohexomutase The alpha-D-phosphohexomutase superfamily includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this family include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). These enzymes play important and diverse roles in carbohydrate metabolism in organisms from bacteria to humans. Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=99.75 E-value=6.2e-18 Score=130.83 Aligned_cols=85 Identities=31% Similarity=0.608 Sum_probs=77.1
Q ss_pred EEEecChHHHHHHHHhhcCchhHHhhhhCCCCCCCcEEEEeCCCCcchHHHHHHHHHhcCCCceeeecCccCCCCCCCCC
Q psy5980 9 VDVIDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINSMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHP 88 (103)
Q Consensus 9 ~~~~D~~~~Yi~~l~~~id~~~i~~~~~~~~~~~~lkVvvD~~nGa~~~~~~~ll~~~lG~~~v~~i~~~~Dg~F~g~~P 88 (103)
+...|+.+.|+++|.+.+|.+.|+.. ++|||+||+||+++.+++.+|+ ++||+ ++.+|+.+||.||+++|
T Consensus 86 ~~~~~~~~~Y~~~l~~~i~~~~i~~~--------~~kvvvD~~~G~~~~~~~~ll~-~lg~~-v~~~n~~~d~~F~~~~p 155 (355)
T cd03084 86 VKAVDILQRYFEALKKLFDVAALSNK--------KFKVVVDSVNGVGGPIAPQLLE-KLGAE-VIPLNCEPDGNFGNINP 155 (355)
T ss_pred EEEcCCHHHHHHHHHHhcChhhhccC--------CCEEEEECCCchHHHHHHHHHH-HcCCc-EEEEcCcCCCCCCCCCC
Confidence 34678899999999999998777654 7999999999999999999999 99995 89999999999999999
Q ss_pred CCc-HHHHHHHHHhhC
Q psy5980 89 DPN-LTYAADLVQAMQ 103 (103)
Q Consensus 89 eP~-~~nL~~L~~~V~ 103 (103)
||. +++|++|.+.|+
T Consensus 156 ~p~~~~~l~~l~~~v~ 171 (355)
T cd03084 156 DPGSETNLKQLLAVVK 171 (355)
T ss_pred CCCchhhHHHHHHHHH
Confidence 999 799999998874
No 6
>KOG0625|consensus
Probab=99.74 E-value=9.8e-18 Score=133.38 Aligned_cols=95 Identities=57% Similarity=0.981 Sum_probs=88.3
Q ss_pred CceeEEEecChHHHHHHHHhhcCchhHHhhhhCCCCCCCcEEEEeCCCCcchHHHHHHHHHhcCCCceeeecCccCCCCC
Q psy5980 5 AQFQVDVIDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINSMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFG 84 (103)
Q Consensus 5 ~~g~~~~~D~~~~Yi~~l~~~id~~~i~~~~~~~~~~~~lkVvvD~~nGa~~~~~~~ll~~~lG~~~v~~i~~~~Dg~F~ 84 (103)
+++.++.+|+..+|++.+++.||+++|++++++ +.++|+.+|+|||++++|...+|.++||++.-..+||.|-|+|+
T Consensus 178 gpf~VeviDpv~~Yv~lmk~IFDF~~ik~lls~---~~~~k~~~DamhGvtGpY~~~IfvdelGa~~~~~~n~~Pl~DFG 254 (558)
T KOG0625|consen 178 GPFTVEVIDPVKDYVNLMKEIFDFDLIKSLLSG---PKKLKFRFDAMHGVTGPYVKAIFVDELGAPASSLQNCVPLEDFG 254 (558)
T ss_pred CCeeEEEeccHHHHHHHHHHHhCHHHHHHHhcC---CCCceEEEeecccccchhhhHHHHhhhCCChHHhccCeeccccC
Confidence 678899999999999999999999999998776 34899999999999999999999889999877789999999999
Q ss_pred CCCCCCcHHHHHHHHHhh
Q psy5980 85 GHHPDPNLTYAADLVQAM 102 (103)
Q Consensus 85 g~~PeP~~~nL~~L~~~V 102 (103)
|+||+|+..+.+.|.++|
T Consensus 255 G~HPDPNLTYAk~LV~rv 272 (558)
T KOG0625|consen 255 GGHPDPNLTYAKDLVDRV 272 (558)
T ss_pred CCCCCCchhhHHHHHHHh
Confidence 999999999999998876
No 7
>PRK15414 phosphomannomutase CpsG; Provisional
Probab=99.72 E-value=2.2e-17 Score=132.01 Aligned_cols=87 Identities=30% Similarity=0.415 Sum_probs=75.5
Q ss_pred ceeEEEecChHHHHHHHHhhcCchhHHhhhhCCCCCCCcEEEEeCCCCcchHHHHHH---HHHhcCCC-ceeeecCccCC
Q psy5980 6 QFQVDVIDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINSMHGVTGPYVKKI---FLEELGAQ-PDNAVNTTPLP 81 (103)
Q Consensus 6 ~g~~~~~D~~~~Yi~~l~~~id~~~i~~~~~~~~~~~~lkVvvD~~nGa~~~~~~~l---l~~~lG~~-~v~~i~~~~Dg 81 (103)
.|.+...|+.+.|+++|.+.+|.++++ ++|||+||+||+++.+++.+ |+ ++||. .++.+|++|||
T Consensus 143 ~g~~~~~~~~~~Yi~~l~~~id~~~~~----------~lkVvvD~~~G~~~~~~~~l~~~l~-~lG~~v~v~~~~~~pdg 211 (456)
T PRK15414 143 RGRYQQINLRDAYVDHLFGYINVKNLT----------PLKLVINSGNGAAGPVVDAIEARFK-ALGAPVELIKVHNTPDG 211 (456)
T ss_pred CCcEEecCcHHHHHHHHHHhcccccCC----------CCEEEEECCCCcchhhHHHHHHHHH-hcCCCeEEEEeecCCCC
Confidence 466777789999999999999875542 69999999999999999998 78 99982 15689999999
Q ss_pred CCCCCCCCCc-HHHHHHHHHhhC
Q psy5980 82 DFGGHHPDPN-LTYAADLVQAMQ 103 (103)
Q Consensus 82 ~F~g~~PeP~-~~nL~~L~~~V~ 103 (103)
.||+++|||. +++|..|++.|+
T Consensus 212 ~F~~~~p~P~~~~~l~~l~~~v~ 234 (456)
T PRK15414 212 NFPNGIPNPLLPECRDDTRNAVI 234 (456)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHH
Confidence 9999999999 689999998773
No 8
>PLN02307 phosphoglucomutase
Probab=99.72 E-value=3.5e-17 Score=134.78 Aligned_cols=88 Identities=55% Similarity=0.961 Sum_probs=74.4
Q ss_pred EEecChHHHHHHHHhhcCchhHHhhhhCCCCCCCcEEEEeCCCCcchHHHHHHH-HHhcCCCceeeecCccCCCCCCCCC
Q psy5980 10 DVIDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINSMHGVTGPYVKKIF-LEELGAQPDNAVNTTPLPDFGGHHP 88 (103)
Q Consensus 10 ~~~D~~~~Yi~~l~~~id~~~i~~~~~~~~~~~~lkVvvD~~nGa~~~~~~~ll-~~~lG~~~v~~i~~~~Dg~F~g~~P 88 (103)
+..|+.+.|+++|.+.+|++.|++.... .+||||+|||||+|+.+++++| + ++|++.++.+|++|||.||+++|
T Consensus 195 ~~~d~~~~Yi~~l~~~i~~~~i~~~~~~----~~lkVvvD~~hGag~~~~~~lL~~-~lG~~~~~~i~~~pDg~Fp~~~P 269 (579)
T PLN02307 195 EVIDPVEDYVKLMKSIFDFELIKKLLSR----PDFTFCFDAMHGVTGAYAKRIFVE-ELGAPESSLLNCVPKEDFGGGHP 269 (579)
T ss_pred EEecCHHHHHHHHHHhhCHHHHhhhccc----CCCeEEEeCCCCccHHHHHHHHHH-hcCCCceeeecCccCCCCCCCCC
Confidence 5579999999999999988766632110 1699999999999999999999 6 99996234999999999999999
Q ss_pred CCcHHHHHHHHHhh
Q psy5980 89 DPNLTYAADLVQAM 102 (103)
Q Consensus 89 eP~~~nL~~L~~~V 102 (103)
||.+++|.+|...+
T Consensus 270 nP~~~~l~~lv~~~ 283 (579)
T PLN02307 270 DPNLTYAKELVKRM 283 (579)
T ss_pred CCCHHHHHHHHHHh
Confidence 99999999988765
No 9
>cd03087 PGM_like1 This archaeal PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=99.72 E-value=2.9e-17 Score=130.31 Aligned_cols=85 Identities=19% Similarity=0.326 Sum_probs=76.1
Q ss_pred eeEEEec-ChHHHHHHHHhhcCchhHHhhhhCCCCCCCcEEEEeCCCCcchHHHHHHHHHhcCCCceeeecCccCCCCCC
Q psy5980 7 FQVDVID-SVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINSMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGG 85 (103)
Q Consensus 7 g~~~~~D-~~~~Yi~~l~~~id~~~i~~~~~~~~~~~~lkVvvD~~nGa~~~~~~~ll~~~lG~~~v~~i~~~~Dg~F~g 85 (103)
|.+...| +.+.|+++|.+.++.+. .. ++|||+||+||+++.+++.+|+ +|||+ ++.+|+++||.||+
T Consensus 137 g~~~~~~~~~~~Y~~~l~~~~~~~~--~~--------~lkIvid~~~G~~~~~~~~~l~-~lg~~-v~~~~~~~d~~f~~ 204 (439)
T cd03087 137 GSVRREDSAIDEYIEAILDKVDIDG--GK--------GLKVVVDCGNGAGSLTTPYLLR-ELGCK-VITLNANPDGFFPG 204 (439)
T ss_pred eeEEecCccHHHHHHHHHHhcCccc--CC--------CCEEEEECCCCchHHHHHHHHH-HcCCE-EEEECCcCCCCCCC
Confidence 6777778 99999999999998643 11 7999999999999999999999 99995 88999999999999
Q ss_pred CCCCCcHHHHHHHHHhhC
Q psy5980 86 HHPDPNLTYAADLVQAMQ 103 (103)
Q Consensus 86 ~~PeP~~~nL~~L~~~V~ 103 (103)
++|+|.+++|.+|.+.|+
T Consensus 205 ~~p~p~~~~l~~l~~~v~ 222 (439)
T cd03087 205 RPPEPTPENLSELMELVR 222 (439)
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999998874
No 10
>cd03089 PMM_PGM The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other membe
Probab=99.72 E-value=2.8e-17 Score=130.60 Aligned_cols=86 Identities=24% Similarity=0.455 Sum_probs=76.6
Q ss_pred CceeEEEecChHHHHHHHHhhcCchhHHhhhhCCCCCCCcEEEEeCCCCcchHHHHHHHHHhcCCCceeeecCccCCCCC
Q psy5980 5 AQFQVDVIDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINSMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFG 84 (103)
Q Consensus 5 ~~g~~~~~D~~~~Yi~~l~~~id~~~i~~~~~~~~~~~~lkVvvD~~nGa~~~~~~~ll~~~lG~~~v~~i~~~~Dg~F~ 84 (103)
+.|.+...|..+.|+++|.+.+|.+. . ++|||+||+||+++.+++.+|+ ++||. ++.+|+++||.||
T Consensus 136 ~~g~~~~~d~~~~Y~~~l~~~i~~~~---~--------~lkVvvd~~~G~~~~~~~~ll~-~lG~~-v~~i~~~~d~~F~ 202 (443)
T cd03089 136 GRGSVEKVDILPDYIDRLLSDIKLGK---R--------PLKVVVDAGNGAAGPIAPQLLE-ALGCE-VIPLFCEPDGTFP 202 (443)
T ss_pred CCCcEEECCCHHHHHHHHHHhccccc---C--------CCeEEEECCCCchHHHHHHHHH-HCCCE-EEEecCCCCCCCC
Confidence 34777777999999999999998642 2 7999999999999999999999 99995 9999999999999
Q ss_pred CCCCCCc-HHHHHHHHHhhC
Q psy5980 85 GHHPDPN-LTYAADLVQAMQ 103 (103)
Q Consensus 85 g~~PeP~-~~nL~~L~~~V~ 103 (103)
++.|+|. +++|..+++.|+
T Consensus 203 ~~~p~p~~~~~l~~l~~~v~ 222 (443)
T cd03089 203 NHHPDPTDPENLEDLIAAVK 222 (443)
T ss_pred CCCcCCCCHHHHHHHHHHHH
Confidence 9999996 799999998874
No 11
>PLN02371 phosphoglucosamine mutase family protein
Probab=99.70 E-value=5.7e-17 Score=133.39 Aligned_cols=92 Identities=21% Similarity=0.277 Sum_probs=76.6
Q ss_pred CceeEEEecChHHHHHHHHhhcCchhH----HhhhhCCCCCCCcEEEEeCCCCcchHHHHHHHHHhcCCCcee-eecCcc
Q psy5980 5 AQFQVDVIDSVEVYLQLMKEIFDFPKL----QSLIKGSSGRPPFKLLINSMHGVTGPYVKKIFLEELGAQPDN-AVNTTP 79 (103)
Q Consensus 5 ~~g~~~~~D~~~~Yi~~l~~~id~~~i----~~~~~~~~~~~~lkVvvD~~nGa~~~~~~~ll~~~lG~~~v~-~i~~~~ 79 (103)
+.|.+...|..+.|+++|++.++...+ .....+ ++|||+|||||+|+.+++.+|+ +|||+ ++ .+|++|
T Consensus 226 ~~g~i~~~d~~~~Y~~~l~~~i~~~~~~~~~~~~~~~-----~lkIvvD~~nGag~~~~~~lL~-~LG~~-v~~~~~~~p 298 (583)
T PLN02371 226 ASSVVCRVDFMSTYAKHLRDAIKEGVGHPTNYETPLE-----GFKIVVDAGNGAGGFFAEKVLE-PLGAD-TSGSLFLEP 298 (583)
T ss_pred cCCcEEEechHHHHHHHHHHHHHHhhccccccccCCC-----CCEEEEeCCCCchHHHHHHHHH-HcCCC-eEeeccCCC
Confidence 346677789999999999999875433 110001 7999999999999999999999 99996 76 899999
Q ss_pred CCCCCCCCCCCc-HHHHHHHHHhhC
Q psy5980 80 LPDFGGHHPDPN-LTYAADLVQAMQ 103 (103)
Q Consensus 80 Dg~F~g~~PeP~-~~nL~~L~~~V~ 103 (103)
||.||+|+|+|. +++|+.++++|+
T Consensus 299 Dg~Fp~~~P~P~~~~~l~~l~~~v~ 323 (583)
T PLN02371 299 DGMFPNHIPNPEDKAAMSATTQAVL 323 (583)
T ss_pred CCCCCCcCCCCCCHHHHHHHHHHHH
Confidence 999999999999 589999998874
No 12
>cd05803 PGM_like4 This PGM-like (phosphoglucomutase-like) domain is located C-terminal to a mannose-1-phosphate guanyltransferase domain in a protein of unknown function that is found in both prokaryotes and eukaryotes. This domain belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=99.70 E-value=6e-17 Score=128.91 Aligned_cols=86 Identities=21% Similarity=0.366 Sum_probs=75.3
Q ss_pred eeEEE-ecChHHHHHHHHhhcCchhHH--hhhhCCCCCCCcEEEEeCCCCcchHHHHHHHHHhcCCCceeeecCccCCCC
Q psy5980 7 FQVDV-IDSVEVYLQLMKEIFDFPKLQ--SLIKGSSGRPPFKLLINSMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDF 83 (103)
Q Consensus 7 g~~~~-~D~~~~Yi~~l~~~id~~~i~--~~~~~~~~~~~lkVvvD~~nGa~~~~~~~ll~~~lG~~~v~~i~~~~Dg~F 83 (103)
|.++. .|..+.|+++|.+.++.+.++ .. ++|||+||+||+++.+++.+|+ ++||+ ++.+|+++||.|
T Consensus 142 g~~~~~~~~~~~Y~~~l~~~~~~~~~~~~~~--------~lkVvvd~~~G~~~~~~~~ll~-~lg~~-v~~~~~~~d~~F 211 (445)
T cd05803 142 GEVTFSEDAIAEHIDKVLALVDVDVIKIRER--------NFKVAVDSVNGAGGLLIPRLLE-KLGCE-VIVLNCEPTGLF 211 (445)
T ss_pred cceeccCchHHHHHHHHHhhcccchhhhccC--------CCEEEEECCCCcHHHHHHHHHH-HcCCE-EEEeCCcCCCCC
Confidence 55554 378899999999999876554 33 7999999999999999999999 99996 889999999999
Q ss_pred CCCCCCCcHHHHHHHHHhhC
Q psy5980 84 GGHHPDPNLTYAADLVQAMQ 103 (103)
Q Consensus 84 ~g~~PeP~~~nL~~L~~~V~ 103 (103)
| ++|+|.+++|..|.+.|+
T Consensus 212 ~-~~p~p~~~~l~~l~~~v~ 230 (445)
T cd05803 212 P-HTPEPLPENLTQLCAAVK 230 (445)
T ss_pred C-CCCCCChHHHHHHHHHHH
Confidence 8 899999999999998774
No 13
>PRK14321 glmM phosphoglucosamine mutase; Provisional
Probab=99.67 E-value=2e-16 Score=126.27 Aligned_cols=82 Identities=18% Similarity=0.252 Sum_probs=74.3
Q ss_pred eeEEEecChHHHHHHHHhhcCchhHHhhhhCCCCCCCcEEEEeCCCCcchHHHHHHHHHhcCCCceeeecCccCCCCCCC
Q psy5980 7 FQVDVIDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINSMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGGH 86 (103)
Q Consensus 7 g~~~~~D~~~~Yi~~l~~~id~~~i~~~~~~~~~~~~lkVvvD~~nGa~~~~~~~ll~~~lG~~~v~~i~~~~Dg~F~g~ 86 (103)
|.++..|+.+.|+++|.+.+|.. . ++|||+|||||+++.+++.+|+ +|||+ ++.+|+++||.|| +
T Consensus 141 g~~~~~~~~~~Y~~~l~~~~~~~----~--------~~kVvvD~~~G~~~~~~~~il~-~lg~~-v~~i~~~~d~~f~-~ 205 (449)
T PRK14321 141 GTLRRADPKEEYIKAALEMIKLE----N--------SYTVVVDSGNGAGSILSPYLQR-ELGNK-VISLNSHPSGFFV-R 205 (449)
T ss_pred ceeeecccHHHHHHHHHHhcCcC----C--------CCEEEEECCCchHHHHHHHHHH-HcCCE-EEEeCccCCCCCC-C
Confidence 66777799999999999999852 2 7999999999999999999999 99995 9999999999998 6
Q ss_pred CCCCcHHHHHHHHHhhC
Q psy5980 87 HPDPNLTYAADLVQAMQ 103 (103)
Q Consensus 87 ~PeP~~~nL~~L~~~V~ 103 (103)
+|+|.+++|.+|.+.|+
T Consensus 206 ~p~p~~~~l~~l~~~v~ 222 (449)
T PRK14321 206 ELEPNAKSLSMLAKTVK 222 (449)
T ss_pred CCCCchhhHHHHHHHHH
Confidence 89999999999999874
No 14
>COG1109 {ManB} Phosphomannomutase [Carbohydrate transport and metabolism]
Probab=99.67 E-value=1.6e-16 Score=127.35 Aligned_cols=88 Identities=24% Similarity=0.420 Sum_probs=76.9
Q ss_pred CceeEEEec-ChHHHHHHHHhhcCchhHHhhhhCCCCCCCcEEEEeCCCCcchHHHHHHHHHhcCCCceeeecCccCCCC
Q psy5980 5 AQFQVDVID-SVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINSMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDF 83 (103)
Q Consensus 5 ~~g~~~~~D-~~~~Yi~~l~~~id~~~i~~~~~~~~~~~~lkVvvD~~nGa~~~~~~~ll~~~lG~~~v~~i~~~~Dg~F 83 (103)
..|.++..+ ..+.|++++.+.++.+ +... ++|||+||+||+|+.+++++|+ ++|+. ++.++++|||.|
T Consensus 148 ~~g~~~~~~~~~~~Y~~~i~~~~~~~-~~~~--------~lkVv~d~~nGaa~~~~~~ll~-~lG~~-vv~~~~~pDg~f 216 (464)
T COG1109 148 ELGRLKRIPDALDRYIEFIKSLVDVD-LKLR--------GLKVVVDCANGAAGLVAPRLLK-ELGAE-VVSINCDPDGLF 216 (464)
T ss_pred cCCceeEcchhHHHHHHHHHHhcccc-cccC--------CcEEEEECCCCchhHHHHHHHH-HcCCE-EEEecCCCCCCC
Confidence 357778777 8999999999999865 2221 6999999999999999999999 99985 999999999999
Q ss_pred CCCCCCCcHHHHHHHHHhhC
Q psy5980 84 GGHHPDPNLTYAADLVQAMQ 103 (103)
Q Consensus 84 ~g~~PeP~~~nL~~L~~~V~ 103 (103)
|+++|+|.++++.+|.++|+
T Consensus 217 p~~~p~p~~~~~~~l~~~v~ 236 (464)
T COG1109 217 PNINPNPGETELLDLAKAVK 236 (464)
T ss_pred CCCCCCCCCccHHHHHHHHH
Confidence 99999999988888888764
No 15
>cd05801 PGM_like3 This bacterial PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=99.66 E-value=3.7e-16 Score=126.92 Aligned_cols=86 Identities=20% Similarity=0.204 Sum_probs=74.3
Q ss_pred eeEEEecChHHHHHHHHhhcCchhHHhhhhCCCCCCCcEEEEeCCCCcchHHHHHHHHHhcCCCceeeecCccCCCCCCC
Q psy5980 7 FQVDVIDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINSMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGGH 86 (103)
Q Consensus 7 g~~~~~D~~~~Yi~~l~~~id~~~i~~~~~~~~~~~~lkVvvD~~nGa~~~~~~~ll~~~lG~~~v~~i~~~~Dg~F~g~ 86 (103)
+.+...|+.+.|+++|.+.+|.+.++.. ++|||+||+||+|+.+++++|+ ++||+ ++.+|+++||.||++
T Consensus 182 ~~~~~~~~~~~Y~~~l~~~v~~~~~~~~--------~lkVvvd~~~G~~~~~~~~ll~-~lG~~-v~~l~~~~d~~f~~~ 251 (522)
T cd05801 182 GYTHRHDFVTPYVADLGNVIDMDAIRKS--------GLRLGVDPLGGASVPYWQPIAE-KYGLN-LTVVNPKVDPTFRFM 251 (522)
T ss_pred CceecCCcHHHHHHHHHHhhChhhhhcC--------CceEEEeCCCCccHHHHHHHHH-HcCCC-EEEEcCeeCCCCCCC
Confidence 5555568999999999999998777644 7999999999999999999999 99995 989999999999988
Q ss_pred CCC--------C-cHHHHHHHHHhh
Q psy5980 87 HPD--------P-NLTYAADLVQAM 102 (103)
Q Consensus 87 ~Pe--------P-~~~nL~~L~~~V 102 (103)
+|+ | .+++|++|++.+
T Consensus 252 ~p~~~~~~~~~p~~~~~l~~l~~~~ 276 (522)
T cd05801 252 TLDHDGKIRMDCSSPYAMAGLLKLK 276 (522)
T ss_pred CCCcccCCCCCCCCHHHHHHHHHhh
Confidence 875 3 368999988753
No 16
>TIGR01132 pgm phosphoglucomutase, alpha-D-glucose phosphate-specific. This enzyme interconverts alpha-D-glucose-1-P and alpha-D-glucose-6-P.
Probab=99.66 E-value=3.8e-16 Score=127.43 Aligned_cols=85 Identities=22% Similarity=0.226 Sum_probs=73.2
Q ss_pred ceeEEEecChHHHHHHHHhhcCchhHHhhhhCCCCCCCcEEEEeCCCCcchHHHHHHHHHhcCCCceeeecCccCCCCCC
Q psy5980 6 QFQVDVIDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINSMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGG 85 (103)
Q Consensus 6 ~g~~~~~D~~~~Yi~~l~~~id~~~i~~~~~~~~~~~~lkVvvD~~nGa~~~~~~~ll~~~lG~~~v~~i~~~~Dg~F~g 85 (103)
.|.+...|+.+.|+++|.+.++.++|+.. ++|||+|||||+++.+++.+|+ ++||+ ++.+|+++||.||+
T Consensus 198 ~g~~~~~d~~~~Y~~~l~~~i~~~~i~~~--------~lkVvvD~~~Ga~~~~~~~il~-~lG~~-v~~l~~~~d~~f~~ 267 (543)
T TIGR01132 198 SGTVKAHDLVQPYVDGLADIVDMAAIQKA--------GLRLGVDPLGGSGIDYWKRIAE-KYNLN-LTLVNPQVDPTFRF 267 (543)
T ss_pred cCceecCCcHHHHHHHHHHhhhhhhhhcC--------CceEEEeCCCCCcHHHHHHHHH-HcCCC-EEEEcCeeCCCCCC
Confidence 35566678999999999999998777644 7999999999999999999999 99995 99999999999999
Q ss_pred CCCC---------CcHHHHHHHHH
Q psy5980 86 HHPD---------PNLTYAADLVQ 100 (103)
Q Consensus 86 ~~Pe---------P~~~nL~~L~~ 100 (103)
++|+ |.+++|++|++
T Consensus 268 ~~pd~~~~~~~~~~~~e~l~~l~~ 291 (543)
T TIGR01132 268 MTLDKDGKIRMDCSSPYAMAGLLA 291 (543)
T ss_pred CCCCcccccCCCCCCHHHHHHHhh
Confidence 8875 23588888775
No 17
>cd05799 PGM2 This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2 is thought to be a phosphopentomutase that catalyzes the conversion of the nucleoside breakdown products, ribose-1-phosphate and deoxyribose-1-phosphate to the corresponding 5-phosphopentoses. PGM2L1 is thought to catalyze the 1,3-bisphosphoglycerate-dependent synthesis of glucose 1,6-bisphosphate and other aldose-bisphosphates that serve as cofactors for several sugar phosphomutases and possibly also as regulators of glycolytic enzymes. PGM2 and PGM2L1 belong to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/ph
Probab=99.62 E-value=1.1e-15 Score=122.75 Aligned_cols=88 Identities=23% Similarity=0.392 Sum_probs=74.0
Q ss_pred eeEEEe--cChHHHHHHHHhhcCchhH-HhhhhCCCCCCCcEEEEeCCCCcchHHHHHHHHHhcCCC-c-eeeecCccCC
Q psy5980 7 FQVDVI--DSVEVYLQLMKEIFDFPKL-QSLIKGSSGRPPFKLLINSMHGVTGPYVKKIFLEELGAQ-P-DNAVNTTPLP 81 (103)
Q Consensus 7 g~~~~~--D~~~~Yi~~l~~~id~~~i-~~~~~~~~~~~~lkVvvD~~nGa~~~~~~~ll~~~lG~~-~-v~~i~~~~Dg 81 (103)
|.++.+ |..+.|+++|++.++.+.+ +.. ++|||+|||||+++.+++.+|+ +|||+ . +..+++++||
T Consensus 155 g~~~~~~~~~~~~Y~~~l~~~i~~~~~~~~~--------~~kVvvD~~~G~~~~~~~~il~-~LG~~~v~~~~~~~~~d~ 225 (487)
T cd05799 155 GLIKYIGEEIDDAYLEAVKKLLVNPELNEGK--------DLKIVYTPLHGVGGKFVPRALK-EAGFTNVIVVEEQAEPDP 225 (487)
T ss_pred CceEEcchHHHHHHHHHHHhhhcccccccCC--------CCcEEEeCCCCccHHHHHHHHH-HcCCCCcEEeeeccCCCc
Confidence 666553 6789999999999986544 433 7999999999999999999999 99984 2 5678999999
Q ss_pred CCCC-CCCCCc-HHHHHHHHHhhC
Q psy5980 82 DFGG-HHPDPN-LTYAADLVQAMQ 103 (103)
Q Consensus 82 ~F~g-~~PeP~-~~nL~~L~~~V~ 103 (103)
.||+ ++|+|. +++|+++++.|+
T Consensus 226 ~F~~~~~p~p~~~~~l~~l~~~v~ 249 (487)
T cd05799 226 DFPTVKFPNPEEPGALDLAIELAK 249 (487)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHH
Confidence 9998 579998 599999998773
No 18
>PRK07564 phosphoglucomutase; Validated
Probab=99.62 E-value=2.5e-15 Score=122.61 Aligned_cols=84 Identities=31% Similarity=0.485 Sum_probs=73.4
Q ss_pred eeEEEecChHHHHHHHHhhcCchhHHhhhhCCCCCCCcEEEEeCCCCcchHHHHHHHHHhcCCCceeeecCccCCCC---
Q psy5980 7 FQVDVIDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINSMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDF--- 83 (103)
Q Consensus 7 g~~~~~D~~~~Yi~~l~~~id~~~i~~~~~~~~~~~~lkVvvD~~nGa~~~~~~~ll~~~lG~~~v~~i~~~~Dg~F--- 83 (103)
|.+...|+.+.|+++|.+.+|.+.++.. ++|||+|||||+++.+++++|+ ++||+ ++.+|+++||.|
T Consensus 198 g~~~~~d~~~~Y~~~l~~~i~~~~i~~~--------~lkIvvD~~~G~~~~~~~~ll~-~lG~~-v~~l~~~~d~~f~~~ 267 (543)
T PRK07564 198 MTVEVIDPVADYVEDLENVFDFDAIRKA--------GLRLGVDPLGGATGPYWKAIAE-RYGLD-LTVVNAPVDPTFNFM 267 (543)
T ss_pred CcEEecccHHHHHHHHHHhhChhhhhcC--------CceEEEecCCCCcHHHHHHHHH-HcCCc-EEEeCCcCCCCCCCC
Confidence 5566678999999999999998777644 7999999999999999999999 99995 999999999988
Q ss_pred -----CCCCCCCc-HHHHHHHHH
Q psy5980 84 -----GGHHPDPN-LTYAADLVQ 100 (103)
Q Consensus 84 -----~g~~PeP~-~~nL~~L~~ 100 (103)
|+|+|+|. +++|..+.+
T Consensus 268 ~~~~~~~~~p~P~~~~~L~~l~~ 290 (543)
T PRK07564 268 PLDDDGKIRMDCSSPYAMAGLLA 290 (543)
T ss_pred CCCccCCcCCCCChHHHHHHHHh
Confidence 47889998 578877764
No 19
>PRK14315 glmM phosphoglucosamine mutase; Provisional
Probab=99.61 E-value=1.9e-15 Score=120.56 Aligned_cols=84 Identities=15% Similarity=0.161 Sum_probs=70.2
Q ss_pred ceeEEEe-cChHHHHHHHHhhcCchhHHhhhhCCCCCCCcEEEEeCCCCcchHHHHHHHHHhcCCCceeeecCccCCCCC
Q psy5980 6 QFQVDVI-DSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINSMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFG 84 (103)
Q Consensus 6 ~g~~~~~-D~~~~Yi~~l~~~id~~~i~~~~~~~~~~~~lkVvvD~~nGa~~~~~~~ll~~~lG~~~v~~i~~~~Dg~F~ 84 (103)
.|.++.+ |+.+.|+++|++.+|.+ ++.. ++|||+|||||+++.+++.+|+ +|||+ ++.+|+++||.||
T Consensus 147 ~g~~~~~~~~~~~Y~~~l~~~id~~-i~~~--------~lkVvvD~~~G~~~~~~~~ll~-~lG~~-v~~i~~~~dg~~~ 215 (448)
T PRK14315 147 IGRAKRIDDAHGRYIEFAKRTLPRD-LRLD--------GLRVVVDCANGAAYKVAPEALW-ELGAE-VITIGVEPNGFNI 215 (448)
T ss_pred CcceEEecchHHHHHHHHHHhcccc-cccC--------CCEEEEECCCchHHHHHHHHHH-HcCCe-EEEeccCCCCCCC
Confidence 3667666 68899999999999854 5543 7999999999999999999999 99996 8899999999998
Q ss_pred CCCCCCcHHHHHHHHHhh
Q psy5980 85 GHHPDPNLTYAADLVQAM 102 (103)
Q Consensus 85 g~~PeP~~~nL~~L~~~V 102 (103)
.++|.| +|+.+|++.|
T Consensus 216 ~~~~~~--~~l~~l~~~v 231 (448)
T PRK14315 216 NEECGS--THPEALAKKV 231 (448)
T ss_pred CCCCCC--CCHHHHHHHH
Confidence 665554 5777777766
No 20
>PRK14317 glmM phosphoglucosamine mutase; Provisional
Probab=99.61 E-value=2.2e-15 Score=120.66 Aligned_cols=84 Identities=15% Similarity=0.094 Sum_probs=71.2
Q ss_pred eeEEE-ecChHHHHHHHHhhcCchhHHhhhhCCCCCCCcEEEEeCCCCcchHHHHHHHHHhcCCCceeeecCccCCCCCC
Q psy5980 7 FQVDV-IDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINSMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGG 85 (103)
Q Consensus 7 g~~~~-~D~~~~Yi~~l~~~id~~~i~~~~~~~~~~~~lkVvvD~~nGa~~~~~~~ll~~~lG~~~v~~i~~~~Dg~F~g 85 (103)
|.+.. .|..+.|+++|.+.+|.+ |+.. ++|||+||+||+++.+++.+|+ +|||+ ++.+|++|||.|+
T Consensus 160 g~~~~~~~~~~~Y~~~l~~~id~~-i~~~--------~~kVvvD~~nG~~~~~~~~ll~-~LG~~-v~~l~~~~dg~~~- 227 (465)
T PRK14317 160 GRHYHRPELLDDYRDALLESLPDR-VNLQ--------GVKIVLDLAWGAAVACAPEVFK-ALGAE-VICLHDQPDGDRI- 227 (465)
T ss_pred CceEecCChHHHHHHHHHHhcCcc-cccC--------CCEEEEECCCchHHHHHHHHHH-HcCCe-EEEEecccCCCCC-
Confidence 54543 488999999999999864 5433 7999999999999999999999 99995 9999999999997
Q ss_pred CCCCCcHHHHHHHHHhhC
Q psy5980 86 HHPDPNLTYAADLVQAMQ 103 (103)
Q Consensus 86 ~~PeP~~~nL~~L~~~V~ 103 (103)
+|+|.+++|++|+++|+
T Consensus 228 -~~~~~~~~l~~l~~~v~ 244 (465)
T PRK14317 228 -NVNCGSTHLEPLQAAVL 244 (465)
T ss_pred -CCCCchHhHHHHHHHHH
Confidence 45566789999998874
No 21
>PRK10887 glmM phosphoglucosamine mutase; Provisional
Probab=99.60 E-value=2.8e-15 Score=119.35 Aligned_cols=86 Identities=22% Similarity=0.230 Sum_probs=70.7
Q ss_pred CceeEEEe-cChHHHHHHHHhhcCchhHHhhhhCCCCCCCcEEEEeCCCCcchHHHHHHHHHhcCCCceeeecCccCCCC
Q psy5980 5 AQFQVDVI-DSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINSMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDF 83 (103)
Q Consensus 5 ~~g~~~~~-D~~~~Yi~~l~~~id~~~i~~~~~~~~~~~~lkVvvD~~nGa~~~~~~~ll~~~lG~~~v~~i~~~~Dg~F 83 (103)
+.|.++.. |..+.|+++|++.+|. .++.. ++|||+||+||+++.+++.+|+ +|||+ ++.+|+++||.|
T Consensus 141 ~~g~~~~~~~~~~~Y~~~l~~~id~-~i~~~--------~~kVvvD~~~G~~~~~~~~ll~-~lG~~-v~~~n~~~dg~~ 209 (443)
T PRK10887 141 ELGKASRINDAAGRYIEFCKSTFPN-ELSLR--------GLKIVVDCANGATYHIAPNVFR-ELGAE-VIAIGCEPNGLN 209 (443)
T ss_pred cCceEEEcCChHHHHHHHHHHhcCc-ccccC--------CCEEEEECCCchHHHHHHHHHH-HhCCe-EEEEeccCCCCC
Confidence 34667665 6889999999999984 34332 7999999999999999999999 99995 889999999999
Q ss_pred CCCCCCCcHHHHHHHHHhhC
Q psy5980 84 GGHHPDPNLTYAADLVQAMQ 103 (103)
Q Consensus 84 ~g~~PeP~~~nL~~L~~~V~ 103 (103)
++++|.| +||++|++.|+
T Consensus 210 ~~~~~~~--~~l~~l~~~v~ 227 (443)
T PRK10887 210 INDECGA--TDPEALQAAVL 227 (443)
T ss_pred CCCCCCC--CCHHHHHHHHH
Confidence 8555544 68888888763
No 22
>cd05805 MPG1_transferase GTP-mannose-1-phosphate guanyltransferase (MPG1 transferase), also known as GDP-mannose pyrophosphorylase, is a bifunctional enzyme with both phosphomannose isomerase (PMI) activity and GDP-mannose phosphorylase (GMP) activity. The protein contains an N-terminal NTP transferase domain, an L-beta-H domain, and a C-terminal PGM-like domain that belongs to the alpha-D-phosphohexomutase superfamily. This subfamily is limited to bacteria and archaea. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this group appear to lack conserved residues necessary for metal binding and catalytic activity. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional
Probab=99.60 E-value=2.8e-15 Score=119.13 Aligned_cols=86 Identities=19% Similarity=0.185 Sum_probs=73.0
Q ss_pred eeEEEe-cChHHHHHHHHhhcCchhHHhhhhCCCCCCCcEEEEeCCCCcchHHHHHHHHHhcCCCceeeecCccCCCCCC
Q psy5980 7 FQVDVI-DSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINSMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGG 85 (103)
Q Consensus 7 g~~~~~-D~~~~Yi~~l~~~id~~~i~~~~~~~~~~~~lkVvvD~~nGa~~~~~~~ll~~~lG~~~v~~i~~~~Dg~F~g 85 (103)
|.++.. |..+.|+++|.+.++.+.|+.. ++|||+||+||+++.+++++|+ ++||+ ++.+|+++||.|.
T Consensus 139 g~~~~~~~~~~~Y~~~l~~~i~~~~i~~~--------~lkIvvd~~~G~~~~~~~~ll~-~lG~~-v~~i~~~~d~~~~- 207 (441)
T cd05805 139 GDITEPPDFVEYYIRGLLRALDTSGLKKS--------GLKVVIDYAYGVAGIVLPGLLS-RLGCD-VVILNARLDEDAP- 207 (441)
T ss_pred CccccchhHHHHHHHHHHHHhCHHHHhhc--------CCeEEEECCCchHHHHHHHHHH-HcCCE-EEEEecccCCccC-
Confidence 555544 6889999999999998777644 7999999999999999999999 99995 8899999999963
Q ss_pred CCCCCcHHHHHHHHHhhC
Q psy5980 86 HHPDPNLTYAADLVQAMQ 103 (103)
Q Consensus 86 ~~PeP~~~nL~~L~~~V~ 103 (103)
++|+|.+++|..+++.|+
T Consensus 208 ~~~~~~~~~l~~l~~~v~ 225 (441)
T cd05805 208 RTDTERQRSLDRLGRIVK 225 (441)
T ss_pred CCCccchhHHHHHHHHHH
Confidence 556666799999998874
No 23
>cd05802 GlmM GlmM is a bacterial phosphoglucosamine mutase (PNGM) that belongs to the alpha-D-phosphohexomutase superfamily. It is required for the interconversion of glucosamine-6-phosphate and glucosamine-1-phosphate in the biosynthetic pathway of UDP-N-acetylglucosamine, an essential precursor to components of the cell envelope. In order to be active, GlmM must be phosphorylated, which can occur via autophosphorylation or by the Ser/Thr kinase StkP. GlmM functions in a classical ping-pong bi-bi mechanism with glucosamine-1,6-diphosphate as an intermediate. Other members of the alpha-D-phosphohexomutase superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=99.60 E-value=3.5e-15 Score=118.37 Aligned_cols=84 Identities=21% Similarity=0.204 Sum_probs=69.8
Q ss_pred ceeEEEe-cChHHHHHHHHhhcCchhHHhhhhCCCCCCCcEEEEeCCCCcchHHHHHHHHHhcCCCceeeecCccCCCCC
Q psy5980 6 QFQVDVI-DSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINSMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFG 84 (103)
Q Consensus 6 ~g~~~~~-D~~~~Yi~~l~~~id~~~i~~~~~~~~~~~~lkVvvD~~nGa~~~~~~~ll~~~lG~~~v~~i~~~~Dg~F~ 84 (103)
.|.++.. |..+.|+++|.+.+|.++ .. ++|||+|||||+++.+++++|+ +|||+ ++.+|+++||.||
T Consensus 141 ~g~~~~~~~~~~~Y~~~l~~~~~~~~--~~--------~lkVvvD~~nG~~~~~~~~ll~-~lg~~-v~~in~~~dg~~~ 208 (434)
T cd05802 141 IGRVYRIDDARGRYIEFLKSTFPKDL--LS--------GLKIVLDCANGAAYKVAPEVFR-ELGAE-VIVINNAPDGLNI 208 (434)
T ss_pred CeeEEEccchHHHHHHHHHHhcCccc--cC--------CCEEEEECCCchHHHHHHHHHH-HcCCe-EEEecCCCCCCCC
Confidence 3666655 788999999999998643 12 7999999999999999999999 99995 9999999999998
Q ss_pred CCCCCCcHHHHHHHHHhhC
Q psy5980 85 GHHPDPNLTYAADLVQAMQ 103 (103)
Q Consensus 85 g~~PeP~~~nL~~L~~~V~ 103 (103)
+++|. ++|+++|.+.|+
T Consensus 209 ~~~~~--~~~~~~l~~~v~ 225 (434)
T cd05802 209 NVNCG--STHPESLQKAVL 225 (434)
T ss_pred CCCCC--ccCHHHHHHHHH
Confidence 66544 468888887763
No 24
>PRK14324 glmM phosphoglucosamine mutase; Provisional
Probab=99.59 E-value=3e-15 Score=119.53 Aligned_cols=83 Identities=19% Similarity=0.226 Sum_probs=67.2
Q ss_pred eeEEEe-cChHHHHHHHHhhcCchhHHhhhhCCCCCCCcEEEEeCCCCcchHHHHHHHHHhcCCCceeeecCccCCCCCC
Q psy5980 7 FQVDVI-DSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINSMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGG 85 (103)
Q Consensus 7 g~~~~~-D~~~~Yi~~l~~~id~~~i~~~~~~~~~~~~lkVvvD~~nGa~~~~~~~ll~~~lG~~~v~~i~~~~Dg~F~g 85 (103)
|.++.. |..+.|+++|.+.++.+ ++.. ++|||+|||||+++.+++.+|+ ++||+ ++.+|+++||.||+
T Consensus 147 g~~~~~~~~~~~Y~~~l~~~i~~~-~~~~--------~lkVvvD~~nGa~~~~~~~ll~-~lG~~-v~~i~~~~dg~~~~ 215 (446)
T PRK14324 147 GSAKRIDDVIGRYIVHIKNSFPKD-LTLK--------GLRIVLDTANGAAYKVAPTVFS-ELGAD-VIVINDEPNGFNIN 215 (446)
T ss_pred eeeEecccHHHHHHHHHHHhcCCc-cCCC--------CCEEEEECCCchHHHHHHHHHH-HcCCe-EEEECCCCCCCCCC
Confidence 666656 68899999999999743 3222 7999999999999999999999 99995 99999999999997
Q ss_pred CCCCCcHHHHHHHHHhh
Q psy5980 86 HHPDPNLTYAADLVQAM 102 (103)
Q Consensus 86 ~~PeP~~~nL~~L~~~V 102 (103)
+.|+| +|+.+|++.|
T Consensus 216 ~~~~~--~~~e~l~~~v 230 (446)
T PRK14324 216 ENCGA--LHPENLAQEV 230 (446)
T ss_pred CCCCC--CCHHHHHHHH
Confidence 77766 3444555554
No 25
>PRK14314 glmM phosphoglucosamine mutase; Provisional
Probab=99.57 E-value=6.8e-15 Score=117.40 Aligned_cols=83 Identities=18% Similarity=0.197 Sum_probs=68.1
Q ss_pred eeEEEe-cChHHHHHHHHhhcCchhHHhhhhCCCCCCCcEEEEeCCCCcchHHHHHHHHHhcCCCceeeecCccCCCCCC
Q psy5980 7 FQVDVI-DSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINSMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGG 85 (103)
Q Consensus 7 g~~~~~-D~~~~Yi~~l~~~id~~~i~~~~~~~~~~~~lkVvvD~~nGa~~~~~~~ll~~~lG~~~v~~i~~~~Dg~F~g 85 (103)
|.+... |..+.|+++|.+.+| ..++.. ++|||+|||||+++.+++.+|+ +|||+ ++.+|+++||.||+
T Consensus 149 g~~~~~~~~~~~Y~~~l~~~id-~~i~~~--------~~kVvvD~~~Ga~~~~~~~il~-~lg~~-v~~~~~~~dg~~~~ 217 (450)
T PRK14314 149 GKAKRIDDAPGRYIVFLKATFP-KGLTLK--------GLKIVLDCANGAAYKVAPAVFE-ELGAE-VICIGVEPNGLNIN 217 (450)
T ss_pred ceEEEeCchHHHHHHHHHHhhc-cccCCC--------CCEEEEECCCchHHHHHHHHHH-HcCCe-EEEeccCCCCCCCC
Confidence 665544 788999999999998 334322 7999999999999999999999 99996 88999999999997
Q ss_pred CCCCCcHHHHHHHHHhh
Q psy5980 86 HHPDPNLTYAADLVQAM 102 (103)
Q Consensus 86 ~~PeP~~~nL~~L~~~V 102 (103)
++|.| +++.+|.++|
T Consensus 218 ~~~~~--~~~~~l~~~v 232 (450)
T PRK14314 218 AGCGS--LHPEVIAKAV 232 (450)
T ss_pred CCCCC--CCHHHHHHHH
Confidence 76665 5666676665
No 26
>TIGR01455 glmM phosphoglucosamine mutase. This model describes GlmM, phosphoglucosamine mutase, also designated in MrsA and YhbF E. coli, UreC in Helicobacter pylori, and femR315 or FemD in Staphlococcus aureus. It converts glucosamine-6-phosphate to glucosamine-1-phosphate as part of the pathway toward UDP-N-acetylglucosamine for peptidoglycan and lipopolysaccharides.
Probab=99.56 E-value=9.5e-15 Score=116.27 Aligned_cols=86 Identities=21% Similarity=0.207 Sum_probs=70.2
Q ss_pred CceeEEEe-cChHHHHHHHHhhcCchhHHhhhhCCCCCCCcEEEEeCCCCcchHHHHHHHHHhcCCCceeeecCccCCCC
Q psy5980 5 AQFQVDVI-DSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINSMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDF 83 (103)
Q Consensus 5 ~~g~~~~~-D~~~~Yi~~l~~~id~~~i~~~~~~~~~~~~lkVvvD~~nGa~~~~~~~ll~~~lG~~~v~~i~~~~Dg~F 83 (103)
+.|.+... |..+.|+++|++.+|. .++.. +||||+||+||+++.+++.+|+ +|||+ ++.+|+++||.|
T Consensus 142 ~~g~~~~~~~~~~~Y~~~l~~~i~~-~~~~~--------~lkVvvD~~~G~~~~~~~~ll~-~lg~~-v~~in~~~d~~~ 210 (443)
T TIGR01455 142 GLGRVKRYPDAVGRYIEFLKSTLPR-GLTLS--------GLKVVLDCANGAAYKVAPHVFR-ELGAE-VIAIGVEPDGLN 210 (443)
T ss_pred CceEEEEcccHHHHHHHHHHHHhhc-ccccC--------CCEEEEECCCchHHHHHHHHHH-HcCCE-EEEEccCCCCCC
Confidence 33666544 7899999999999884 24433 7999999999999999999999 99996 899999999999
Q ss_pred CCCCCCCcHHHHHHHHHhhC
Q psy5980 84 GGHHPDPNLTYAADLVQAMQ 103 (103)
Q Consensus 84 ~g~~PeP~~~nL~~L~~~V~ 103 (103)
|..+|. ++|+..|.+.|+
T Consensus 211 ~~~~~~--~~~l~~l~~~v~ 228 (443)
T TIGR01455 211 INDGCG--STHLDALQKAVR 228 (443)
T ss_pred CCCCCC--CCCHHHHHHHHh
Confidence 855443 478888887763
No 27
>PTZ00150 phosphoglucomutase-2-like protein; Provisional
Probab=99.55 E-value=1e-14 Score=119.98 Aligned_cols=82 Identities=20% Similarity=0.332 Sum_probs=69.7
Q ss_pred ecChHHHHHHHHhhcCchhHHhhhhCCCCCCCcEEEEeCCCCcchHHHHHHHHHhcCCCc--eeeecCccCCCCCCC-CC
Q psy5980 12 IDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINSMHGVTGPYVKKIFLEELGAQP--DNAVNTTPLPDFGGH-HP 88 (103)
Q Consensus 12 ~D~~~~Yi~~l~~~id~~~i~~~~~~~~~~~~lkVvvD~~nGa~~~~~~~ll~~~lG~~~--v~~i~~~~Dg~F~g~-~P 88 (103)
.|+.+.|+++|.+.++.+.|+.. ++|||+|||||+|+.+++++|+ ++||+. ++.+++.|||+||+. .|
T Consensus 205 ~d~~~~Yi~~l~~~i~~~~i~~~--------~lkIv~d~~~G~g~~~~~~iL~-~lG~~~~~~v~~~~~pDg~Fp~~~~P 275 (584)
T PTZ00150 205 AEVSDAYFATLKSEYNPACCDRS--------KVKIVYTAMHGVGTRFVQKALH-TVGLPNLLSVAQQAEPDPEFPTVTFP 275 (584)
T ss_pred hhhHHHHHHHHHhhcChhhhccC--------CCeEEEeCCCCccHHHHHHHHH-hcCCCCceEeccccccCcCCCCCCCc
Confidence 36688999999999887656543 7999999999999999999999 999953 568899999999986 58
Q ss_pred CCc--HHHHHHHHHhh
Q psy5980 89 DPN--LTYAADLVQAM 102 (103)
Q Consensus 89 eP~--~~nL~~L~~~V 102 (103)
+|. +++|..+++.|
T Consensus 276 nPe~~~~~l~~~~~~v 291 (584)
T PTZ00150 276 NPEEGKGALKLSMETA 291 (584)
T ss_pred ChhhhHHHHHHHHHHH
Confidence 886 58898888876
No 28
>PRK14316 glmM phosphoglucosamine mutase; Provisional
Probab=99.53 E-value=3.6e-14 Score=113.02 Aligned_cols=81 Identities=22% Similarity=0.288 Sum_probs=66.7
Q ss_pred eeEEEe-cChHHHHHHHHhhcCchhHHhhhhCCCCCCCcEEEEeCCCCcchHHHHHHHHHhcCCCceeeecCccCCCCCC
Q psy5980 7 FQVDVI-DSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINSMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGG 85 (103)
Q Consensus 7 g~~~~~-D~~~~Yi~~l~~~id~~~i~~~~~~~~~~~~lkVvvD~~nGa~~~~~~~ll~~~lG~~~v~~i~~~~Dg~F~g 85 (103)
|.++.. |..+.|+++|.+.+|.+ + . ++|||+|||||+++.+++++|+ +|||+ ++.+|++|||.||+
T Consensus 147 g~~~~~~~~~~~Y~~~l~~~i~~~-~--~--------~lkvvvD~~nG~~~~~~~~ll~-~lg~~-v~~in~~~dg~~~~ 213 (448)
T PRK14316 147 GTVSDYPEGLRKYLQFLKSTIDED-L--S--------GLKVALDCANGATSSLAPRLFA-DLGAD-VTVIGTSPDGLNIN 213 (448)
T ss_pred eeEEEeCcHHHHHHHHHHHhcCcc-c--C--------CCEEEEECCCchhhHHHHHHHH-HcCCe-EEEEccCCCCCCCC
Confidence 555544 67899999999999863 1 1 6999999999999999999999 99995 89999999999987
Q ss_pred CCCCCcHHHHHHHHHhh
Q psy5980 86 HHPDPNLTYAADLVQAM 102 (103)
Q Consensus 86 ~~PeP~~~nL~~L~~~V 102 (103)
++|.| +++++|++.|
T Consensus 214 ~~~~~--~~~~~l~~~v 228 (448)
T PRK14316 214 DGVGS--THPEALQELV 228 (448)
T ss_pred CCCCC--CCHHHHHHHH
Confidence 76665 4556666665
No 29
>PRK14318 glmM phosphoglucosamine mutase; Provisional
Probab=99.53 E-value=2.7e-14 Score=113.92 Aligned_cols=82 Identities=18% Similarity=0.131 Sum_probs=67.6
Q ss_pred eeEEEe-cChHHHHHHHHhhcCchhHHhhhhCCCCCCCcEEEEeCCCCcchHHHHHHHHHhcCCCceeeecCccCCCCCC
Q psy5980 7 FQVDVI-DSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINSMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGG 85 (103)
Q Consensus 7 g~~~~~-D~~~~Yi~~l~~~id~~~i~~~~~~~~~~~~lkVvvD~~nGa~~~~~~~ll~~~lG~~~v~~i~~~~Dg~F~g 85 (103)
|.+... |..+.|+++|.+.++. +.. ++|||+||+||+++.+++++|+ +|||+ ++.+|+++||.||+
T Consensus 149 g~~~~~~~~~~~Y~~~l~~~i~~---~~~--------~~kVvvD~~nG~~~~~~~~ll~-~lG~~-v~~in~~~dg~~~~ 215 (448)
T PRK14318 149 GRVIDAPDATDRYLRHLLGALPT---RLD--------GLKVVVDCAHGAASGVAPEAYR-AAGAD-VIAINADPDGLNIN 215 (448)
T ss_pred ceEEECCcHHHHHHHHHHHHhcc---ccC--------CCEEEEECCCchHHHHHHHHHH-HcCCE-EEEeccCCCCCCCC
Confidence 656544 6889999999999873 222 7999999999999999999999 99996 88999999999975
Q ss_pred CCCCCcHHHHHHHHHhhC
Q psy5980 86 HHPDPNLTYAADLVQAMQ 103 (103)
Q Consensus 86 ~~PeP~~~nL~~L~~~V~ 103 (103)
..|. ++||++|++.|+
T Consensus 216 ~~~~--~~~l~~l~~~v~ 231 (448)
T PRK14318 216 DGCG--STHLEQLQAAVV 231 (448)
T ss_pred CCCC--CCCHHHHHHHHH
Confidence 5443 478888888763
No 30
>PRK14320 glmM phosphoglucosamine mutase; Provisional
Probab=99.52 E-value=4.2e-14 Score=112.67 Aligned_cols=84 Identities=12% Similarity=0.224 Sum_probs=69.1
Q ss_pred ceeEEEe-cChHHHHHHHHhhcCchhHHhhhhCCCCCCCcEEEEeCCCCcchHHHHHHHHHhcCCCceeeecCccCCCCC
Q psy5980 6 QFQVDVI-DSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINSMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFG 84 (103)
Q Consensus 6 ~g~~~~~-D~~~~Yi~~l~~~id~~~i~~~~~~~~~~~~lkVvvD~~nGa~~~~~~~ll~~~lG~~~v~~i~~~~Dg~F~ 84 (103)
.|.++.. |..+.|+++|.+.++ .+++. ++|||+|||||+++.+++.+|+ +|||+ ++.+|+++||.|+
T Consensus 144 ~g~~~~~~~~~~~Y~~~l~~~~~--~~~~~--------~~kVvvD~~nG~~~~~~~~ll~-~lg~~-v~~i~~~~dg~~~ 211 (443)
T PRK14320 144 FGSYKILANAIDEYIESIHSRFA--KFVNY--------KGKVVVDCAHGAASHNFEALLD-KFGIN-YVSIASNPDGLNI 211 (443)
T ss_pred CcceEeccchHHHHHHHHHHHHH--hhccC--------CCEEEEECCCchHHHHHHHHHH-HcCCc-EEEECCcCCCCCC
Confidence 4666655 688999999998876 23322 5799999999999999999999 99995 8899999999997
Q ss_pred CCCCCCcHHHHHHHHHhhC
Q psy5980 85 GHHPDPNLTYAADLVQAMQ 103 (103)
Q Consensus 85 g~~PeP~~~nL~~L~~~V~ 103 (103)
+|+|.+++++.|+++|+
T Consensus 212 --~~~~~~~~l~~l~~~v~ 228 (443)
T PRK14320 212 --NVGCGATCVSNIKKAVK 228 (443)
T ss_pred --CCCCchHhHHHHHHHHH
Confidence 45555689999988773
No 31
>PRK14322 glmM phosphoglucosamine mutase; Provisional
Probab=99.51 E-value=5e-14 Score=111.85 Aligned_cols=83 Identities=18% Similarity=0.147 Sum_probs=67.2
Q ss_pred ceeEEEe-cChHHHHHHHHhhcCchhHHhhhhCCCCCCCcEEEEeCCCCcchHHHHHHHHHhcCCCceeeecCccCCCCC
Q psy5980 6 QFQVDVI-DSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINSMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFG 84 (103)
Q Consensus 6 ~g~~~~~-D~~~~Yi~~l~~~id~~~i~~~~~~~~~~~~lkVvvD~~nGa~~~~~~~ll~~~lG~~~v~~i~~~~Dg~F~ 84 (103)
.|.+... +..+.|+++|.+.++. ++.. ++|||+||+||+++.+++++|+ +|||+ ++.+|+++||.|+
T Consensus 137 ~g~~~~~~~~~~~Y~~~l~~~v~~--~~~~--------~~kVvvD~~nG~~~~~~~~ll~-~lg~~-v~~ln~~~dg~~~ 204 (429)
T PRK14322 137 VGRTKSFREGRDMYIGAVLEMFRD--LDLT--------GEMVSLDLANGATTTTAKEVFE-FLGAK-VEVFNDSQDGLLI 204 (429)
T ss_pred ceeEEeccchHHHHHHHHHHhhcc--cccC--------CCEEEEECCCChHHHHHHHHHH-HcCCE-EEEECCcCCCCCC
Confidence 3666656 7889999999998872 2212 6999999999999999999999 99995 9999999999998
Q ss_pred CCCCCCcHHHHHHHHHhh
Q psy5980 85 GHHPDPNLTYAADLVQAM 102 (103)
Q Consensus 85 g~~PeP~~~nL~~L~~~V 102 (103)
+..+. ++|+.+|.+.|
T Consensus 205 ~~~~~--~~~l~~l~~~v 220 (429)
T PRK14322 205 NQGCG--ATHPRFLAEEM 220 (429)
T ss_pred CCCCC--cCCHHHHHHHH
Confidence 55443 46777777665
No 32
>PRK14319 glmM phosphoglucosamine mutase; Provisional
Probab=99.50 E-value=6.5e-14 Score=111.21 Aligned_cols=82 Identities=20% Similarity=0.122 Sum_probs=65.2
Q ss_pred eeEEEe-cChHHHHHHHHhhcCchhHHhhhhCCCCCCCcEEEEeCCCCcchHHHHHHHHHhcCCCceeeecCccCCCCCC
Q psy5980 7 FQVDVI-DSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINSMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGG 85 (103)
Q Consensus 7 g~~~~~-D~~~~Yi~~l~~~id~~~i~~~~~~~~~~~~lkVvvD~~nGa~~~~~~~ll~~~lG~~~v~~i~~~~Dg~F~g 85 (103)
|.+... +..+.|+++|.+.++. ++.. ++|||+||+||+++.+++.+|+ +|||+ ++.+|+++||.|++
T Consensus 135 g~~~~~~~~~~~Y~~~l~~~~~~--~~~~--------~~kvvvD~~nGa~~~~~~~ll~-~Lg~~-v~~ln~~~dg~~~~ 202 (430)
T PRK14319 135 GCVIDYKLAFEEYFNYIKQQYEG--LDLS--------GIKIVVDVANGATYELNPYILE-YFGAK-VEVVNNTPDGFNIN 202 (430)
T ss_pred eeEEeccchHHHHHHHHHHhcCc--cccC--------CCEEEEECCCChHHHHHHHHHH-HcCCE-EEEECCCCCCCCCC
Confidence 556555 4679999999999873 2222 7999999999999999999999 99995 98999999999987
Q ss_pred CCCCCcHHHHHHHHHhh
Q psy5980 86 HHPDPNLTYAADLVQAM 102 (103)
Q Consensus 86 ~~PeP~~~nL~~L~~~V 102 (103)
++|.| +|+++|.+.|
T Consensus 203 ~~~~~--~~~~~l~~~v 217 (430)
T PRK14319 203 VDCGS--THPENAKEKI 217 (430)
T ss_pred CCCCC--CCHHHHHHHH
Confidence 76654 4555555543
No 33
>PRK14323 glmM phosphoglucosamine mutase; Provisional
Probab=99.50 E-value=7.5e-14 Score=111.04 Aligned_cols=82 Identities=18% Similarity=0.136 Sum_probs=67.9
Q ss_pred ceeEEEe-cChHHHHHHHHhhcCchhHHhhhhCCCCCCCcEEEEeCCCCcchHHHHHHHHHhcCCCceeeecCccCCCCC
Q psy5980 6 QFQVDVI-DSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINSMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFG 84 (103)
Q Consensus 6 ~g~~~~~-D~~~~Yi~~l~~~id~~~i~~~~~~~~~~~~lkVvvD~~nGa~~~~~~~ll~~~lG~~~v~~i~~~~Dg~F~ 84 (103)
.|.++.. |..+.|++++.+.++ .+ . ++|||+|||||+++.+++.+|+ +|||+ ++.+|+++||.|+
T Consensus 147 ~g~~~~~~~~~~~Y~~~l~~~~~--~~--~--------~~kVvvD~~~G~~~~~~~~ll~-~lG~~-v~~l~~~~dg~~~ 212 (440)
T PRK14323 147 IGSVSDFTEAERLYLDFLLSHAP--DL--S--------GLKVALDCANGAAYRLAPKVFQ-AAGAD-VFALFNTPDGRNI 212 (440)
T ss_pred ceeEEEhhhHHHHHHHHHHHhcc--cc--c--------CCEEEEECCCchHHHHHHHHHH-HcCCc-EEEEeccCCCCcC
Confidence 4777665 688999999998875 11 1 6999999999999999999999 99995 8899999999998
Q ss_pred CCCCCCcHHHHHHHHHhhC
Q psy5980 85 GHHPDPNLTYAADLVQAMQ 103 (103)
Q Consensus 85 g~~PeP~~~nL~~L~~~V~ 103 (103)
+++|. ++|+++|.+.|+
T Consensus 213 ~~~~~--~~~l~~l~~~v~ 229 (440)
T PRK14323 213 NRGCG--STHPEALQRFVV 229 (440)
T ss_pred CCCCC--CCCHHHHHHHHh
Confidence 66554 468888887764
No 34
>cd03088 ManB ManB is a bacterial phosphomannomutase (PMM) that catalyzes the conversion of mannose 6-phosphate to mannose-1-phosphate in the second of three steps in the GDP-mannose pathway, in which GDP-D-mannose is synthesized from fructose-6-phosphate. In Mycobacterium tuberculosis, the causative agent of tuberculosis, PMM is involved in the biosynthesis of mannosylated lipoglycans that participate in the association of mycobacteria with host macrophage phagocytic receptors. ManB belongs to the the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrall
Probab=99.44 E-value=2.7e-13 Score=108.58 Aligned_cols=83 Identities=13% Similarity=0.130 Sum_probs=68.1
Q ss_pred eeEEEecChHHHHHHHHhhcCchhHHhhhhCCCCCCCcEEEEeCCCCcchHHHHHHHHHhcCCCceeeecCccCCCCCCC
Q psy5980 7 FQVDVIDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINSMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGGH 86 (103)
Q Consensus 7 g~~~~~D~~~~Yi~~l~~~id~~~i~~~~~~~~~~~~lkVvvD~~nGa~~~~~~~ll~~~lG~~~v~~i~~~~Dg~F~g~ 86 (103)
+.+...+..+.|+++|.+.++.++++ ++|||+|||||+++.+++++|+ ++||+ ++.+|+. +.|+++
T Consensus 139 ~~~~~~~~~~~Y~~~l~~~i~~~~~~----------~lkIvvD~~~G~~~~~~~~ll~-~lG~~-v~~l~~~--~~~~~~ 204 (459)
T cd03088 139 LLPPDTDAADAYIARYTDFFGAGALK----------GLRIGVYQHSSVGRDLLVRILE-ALGAE-VVPLGRS--DTFIPV 204 (459)
T ss_pred CCcccchHHHHHHHHHHHHhCccccC----------CCEEEEECCCCCHHHHHHHHHH-HcCCe-EEEeCCC--CCCCCC
Confidence 33445578899999999999865442 6999999999999999999999 99996 8899875 467777
Q ss_pred CCCCc-HHHHHHHHHhhC
Q psy5980 87 HPDPN-LTYAADLVQAMQ 103 (103)
Q Consensus 87 ~PeP~-~~nL~~L~~~V~ 103 (103)
+|+|. +++|+.|++.|+
T Consensus 205 ~~~~~~~~~l~~l~~~v~ 222 (459)
T cd03088 205 DTEAVRPEDRALAAAWAA 222 (459)
T ss_pred CCCcCCHHHHHHHHHHHH
Confidence 77775 599999998773
No 35
>cd03086 PGM3 PGM3 (phosphoglucomutase 3), also known as PAGM (phosphoacetylglucosamine mutase) and AGM1 (N-acetylglucosamine-phosphate mutase), is an essential enzyme found in eukaryotes that reversibly catalyzes the conversion of GlcNAc-6-phosphate into GlcNAc-1-phosphate as part of the UDP-N-acetylglucosamine (UDP-GlcNAc) biosynthetic pathway. UDP-GlcNAc is an essential metabolite that serves as the biosynthetic precursor of many glycoproteins and mucopolysaccharides. AGM1 is a member of the alpha-D-phosphohexomutase superfamily, which catalyzes the intramolecular phosphoryl transfer of sugar substrates. The alpha-D-phosphohexomutases have four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=99.39 E-value=5.4e-13 Score=108.79 Aligned_cols=78 Identities=14% Similarity=0.149 Sum_probs=64.9
Q ss_pred hHHHHHHHHhh----cC-chhHHhhhhCCCCCCCcEEEEeCCCCcchHHHHHHHHHhcC--CCceeeecCccCCCCCCCC
Q psy5980 15 VEVYLQLMKEI----FD-FPKLQSLIKGSSGRPPFKLLINSMHGVTGPYVKKIFLEELG--AQPDNAVNTTPLPDFGGHH 87 (103)
Q Consensus 15 ~~~Yi~~l~~~----id-~~~i~~~~~~~~~~~~lkVvvD~~nGa~~~~~~~ll~~~lG--~~~v~~i~~~~Dg~F~g~~ 87 (103)
.+.|+++|.+. ++ .+.++.. ++||||||+||+|+.+++++|+ +|| +. ++.||++|||.| +++
T Consensus 162 ~~~Y~~~l~~~f~~lv~~~~~~~~~--------~~kVvvD~aNGag~~~~~~ll~-~Lg~~~~-v~~in~~~dg~~-~~n 230 (513)
T cd03086 162 EEGYYEKLSKAFNELYNLLQDGGDE--------PEKLVVDCANGVGALKLKELLK-RLKKGLS-VKIINDGEEGPE-LLN 230 (513)
T ss_pred HHHHHHHHHHHHHHHHhhccccccC--------CCEEEEECCCcHHHHHHHHHHH-HcCCCcE-EEEEccCCCCcc-cCC
Confidence 56799999877 66 4444433 7999999999999999999999 999 85 999999999997 566
Q ss_pred CCCcHHHHHHHHHhhC
Q psy5980 88 PDPNLTYAADLVQAMQ 103 (103)
Q Consensus 88 PeP~~~nL~~L~~~V~ 103 (103)
++|.++|++.|++.++
T Consensus 231 ~~~ga~~l~~l~~~v~ 246 (513)
T cd03086 231 DGCGADYVKTKQKPPR 246 (513)
T ss_pred CCcccccHHHHHHHHH
Confidence 6666899999987763
No 36
>COG0033 Pgm Phosphoglucomutase [Carbohydrate transport and metabolism]
Probab=99.26 E-value=9e-12 Score=100.07 Aligned_cols=77 Identities=39% Similarity=0.635 Sum_probs=70.1
Q ss_pred eeEEEecChHHHHHHHHhhcCchhHHhhhhCCCCCCCcEEEEeCCCCcchHHHHHHHHHhcCCCceeeecCccCCCCCCC
Q psy5980 7 FQVDVIDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINSMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGGH 86 (103)
Q Consensus 7 g~~~~~D~~~~Yi~~l~~~id~~~i~~~~~~~~~~~~lkVvvD~~nGa~~~~~~~ll~~~lG~~~v~~i~~~~Dg~F~g~ 86 (103)
..++.+|+..+|++.|.+.||+++||++ .+++++|+|+|++++|+.+|+++++|....+.-|..|-|.|+++
T Consensus 176 ~~v~~~D~v~~Yv~~l~~i~D~daIr~~--------~~~l~~D~l~g~t~~Y~~~I~e~~~~~~t~v~~~~~p~~~F~~l 247 (524)
T COG0033 176 LTVKIIDPVKDYVELLEEIFDFDAIRKA--------GLRLGFDPLGGVTGPYWKAIAEKYLLNLTGVNQNVDPTPDFMGL 247 (524)
T ss_pred ceeeeecchHHHHHHHHHhhcHHHHHHH--------HhhcccccccCccchhHHHHHHHhcCCchhhccCcccCccccCC
Confidence 4478999999999999999999999998 78899999999999999999998887655667788899999999
Q ss_pred CCCCc
Q psy5980 87 HPDPN 91 (103)
Q Consensus 87 ~PeP~ 91 (103)
+|+|.
T Consensus 248 ~~D~n 252 (524)
T COG0033 248 DPDGN 252 (524)
T ss_pred CCCCC
Confidence 99997
No 37
>KOG1220|consensus
Probab=98.63 E-value=1.5e-07 Score=77.77 Aligned_cols=80 Identities=23% Similarity=0.335 Sum_probs=58.4
Q ss_pred hHHHHHHHHhhcCchhHHhhhhCCCCCCCcEEEEeCCCCcchHHHHHHHHHhcCCCc--eeeecCccCCCCCC-CCCCCc
Q psy5980 15 VEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINSMHGVTGPYVKKIFLEELGAQP--DNAVNTTPLPDFGG-HHPDPN 91 (103)
Q Consensus 15 ~~~Yi~~l~~~id~~~i~~~~~~~~~~~~lkVvvD~~nGa~~~~~~~ll~~~lG~~~--v~~i~~~~Dg~F~g-~~PeP~ 91 (103)
.+.|.+.+.+.++--- +..-. ..++++|+++|||+|+.++..+|. .+|+.. .....++|||.||. +-|+|.
T Consensus 224 ~~~~~e~~k~~l~~~~-~e~n~----~s~~~fVyta~hGvG~~F~~~al~-~~~~~~~~~v~eq~~Pdp~FPt~~~PNPE 297 (607)
T KOG1220|consen 224 IPPYFEVYKELLPCFH-REANP----LSGLKFVYTAGHGVGGFFVKKALE-KLGLDTMISVPEQLEPDPMFPTVPFPNPE 297 (607)
T ss_pred chHHHHHHHhcCccHh-hhhcc----CCCceEEEecCCCccHHHHHHHHH-HhCCCccccchhhcCCCCCCCCCCCCCcc
Confidence 3567888877665211 11101 126999999999999999999999 999875 45678999999999 679998
Q ss_pred H-HHHHHHHH
Q psy5980 92 L-TYAADLVQ 100 (103)
Q Consensus 92 ~-~nL~~L~~ 100 (103)
+ ..|+--++
T Consensus 298 ek~aL~ls~~ 307 (607)
T KOG1220|consen 298 EKGALDLSIK 307 (607)
T ss_pred hHHHHHHHHH
Confidence 7 44444333
No 38
>PTZ00302 N-acetylglucosamine-phosphate mutase; Provisional
Probab=98.55 E-value=1e-07 Score=79.25 Aligned_cols=83 Identities=18% Similarity=0.238 Sum_probs=58.9
Q ss_pred hHHHHHHHHhhcCchhHHhhhhCCC-----CCCCcEEEEeCCCCcchHHHHHHHHHhc---CCCceeeecCccCCCCCCC
Q psy5980 15 VEVYLQLMKEIFDFPKLQSLIKGSS-----GRPPFKLLINSMHGVTGPYVKKIFLEEL---GAQPDNAVNTTPLPDFGGH 86 (103)
Q Consensus 15 ~~~Yi~~l~~~id~~~i~~~~~~~~-----~~~~lkVvvD~~nGa~~~~~~~ll~~~l---G~~~v~~i~~~~Dg~F~g~ 86 (103)
.+.|.+++.+.|. .+.+...... ....-+|+|||+||+|+..++++++ .| |+. ++.+|+++|+.| +
T Consensus 214 e~~Y~~~~~~~f~--~l~~~~~~~~~~~~~~~~~~kVvVD~ANGvg~~~~~~ll~-~L~~~g~~-v~~in~~~dg~~--~ 287 (585)
T PTZ00302 214 DELYYAYLLAAFK--ELYRTLQEGGPVDLTQNNSKILVVDCANGVGGYKIKRFFE-ALKQLGIE-IIPININCDEEE--L 287 (585)
T ss_pred HHHHHHHHHHHHH--HHHhhCCccccccccccCCCeEEEECCCcHHHHHHHHHHH-HhhhCCCE-EEEEecCCCCCC--C
Confidence 3668888876544 2221111000 0012489999999999999999999 88 774 999999999987 5
Q ss_pred CCCCc-HHHHHHHHHhhC
Q psy5980 87 HPDPN-LTYAADLVQAMQ 103 (103)
Q Consensus 87 ~PeP~-~~nL~~L~~~V~ 103 (103)
.++|. +++++.++++++
T Consensus 288 lN~~cGad~vk~lq~~p~ 305 (585)
T PTZ00302 288 LNDKCGADYVQKTRKPPR 305 (585)
T ss_pred CCCCCccccHHHHHHHHH
Confidence 66666 699999888763
No 39
>PLN02895 phosphoacetylglucosamine mutase
Probab=98.48 E-value=2.5e-07 Score=76.65 Aligned_cols=79 Identities=18% Similarity=0.199 Sum_probs=56.8
Q ss_pred hHHHHHHHHhhcCchhHHhhhhCC--CCCCCcEEEEeCCCCcchHHHHHHHHHhcCCCcee-eecCccCCCCCCCCCCCc
Q psy5980 15 VEVYLQLMKEIFDFPKLQSLIKGS--SGRPPFKLLINSMHGVTGPYVKKIFLEELGAQPDN-AVNTTPLPDFGGHHPDPN 91 (103)
Q Consensus 15 ~~~Yi~~l~~~id~~~i~~~~~~~--~~~~~lkVvvD~~nGa~~~~~~~ll~~~lG~~~v~-~i~~~~Dg~F~g~~PeP~ 91 (103)
.+.|.+.+.+.|. .+....... ..+.+.||+|||+||+|+..++++++ .||+. ++ .+|+++||.| +.|+|.
T Consensus 184 e~~Y~~~l~~~f~--~l~~~~~~~~~~~~~~~kvvVDcANGvg~~~~~~l~~-~Lg~~-~i~~iN~~~dG~~--~lN~~c 257 (562)
T PLN02895 184 ESDYFEQLSSSFR--ALLDLIPNGSGDDRADDKLVVDGANGVGAEKLETLKK-ALGGL-DLEVRNSGKEGEG--VLNEGV 257 (562)
T ss_pred HHHHHHHHHHHHH--HHHhcCCCccccccCCCEEEEECCCcHHHHHHHHHHH-HCCCc-EEEEeecCCCCCC--CCCCCC
Confidence 4668888876543 221110000 00113689999999999999999999 99986 55 8999999988 778887
Q ss_pred -HHHHHHHH
Q psy5980 92 -LTYAADLV 99 (103)
Q Consensus 92 -~~nL~~L~ 99 (103)
+++++.++
T Consensus 258 Gad~v~~lq 266 (562)
T PLN02895 258 GADFVQKEK 266 (562)
T ss_pred ccCcHHHHH
Confidence 58888887
No 40
>KOG2537|consensus
Probab=84.80 E-value=1.9 Score=36.04 Aligned_cols=62 Identities=21% Similarity=0.203 Sum_probs=37.1
Q ss_pred hHHHHHHHHhhcCchhHHhhhhCCCCCCCcEEEEeCCCCcchHHHHHHHHHhcC-CCceeeecCccC
Q psy5980 15 VEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINSMHGVTGPYVKKIFLEELG-AQPDNAVNTTPL 80 (103)
Q Consensus 15 ~~~Yi~~l~~~id~~~i~~~~~~~~~~~~lkVvvD~~nGa~~~~~~~ll~~~lG-~~~v~~i~~~~D 80 (103)
.+.|++.+.+.+....... ...+....|+.|||.||.|++-+..+.. -.. .-.+..+|...|
T Consensus 186 ~~~Y~~~ls~af~~l~~~~---~~~~~~~~k~~VD~ANGvG~~klk~l~~-i~~~~l~vEivNd~~d 248 (539)
T KOG2537|consen 186 EEGYYSKLSKAFNELRNIT---QESGDEVSKLIVDCANGVGAPKLKELLG-IDSGLLNVEVVNDGID 248 (539)
T ss_pred cccHHHHHHHHHHHhhhhc---cccCCccceEEEECccccchHHHHHHhc-cCCCcCceEEEcCCCC
Confidence 4678888877665322111 1111124599999999999987765543 221 112667787776
No 41
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=84.15 E-value=4.5 Score=32.20 Aligned_cols=59 Identities=17% Similarity=0.263 Sum_probs=35.8
Q ss_pred CcEEEEeCCCCcc-hHHHHHHHH--HhcCCCc--eeeecCccCCCCCCCCCCCcHHHHHHHHHhh
Q psy5980 43 PFKLLINSMHGVT-GPYVKKIFL--EELGAQP--DNAVNTTPLPDFGGHHPDPNLTYAADLVQAM 102 (103)
Q Consensus 43 ~lkVvvD~~nGa~-~~~~~~ll~--~~lG~~~--v~~i~~~~Dg~F~g~~PeP~~~nL~~L~~~V 102 (103)
++.|++|+.|++| +.+++.+-+ -.+|+ + +++.|.+||-....+.--=.++.+.+|.+.+
T Consensus 271 ~lPVi~DpsH~~G~sd~~~~~a~AAva~GA-dGliIE~H~~pd~AlsD~~qsl~p~~~~~l~~~i 334 (352)
T PRK13396 271 HLPIMIDPSHGTGKSEYVPSMAMAAIAAGT-DSLMIEVHPNPAKALSDGPQSLTPDRFDRLMQEL 334 (352)
T ss_pred CCCEEECCcccCCcHHHHHHHHHHHHhhCC-CeEEEEecCCcccCCChhhhcCCHHHHHHHHHHH
Confidence 6899999999998 333333221 15676 4 6678888877766332111245666665543
No 42
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=81.94 E-value=7.2 Score=30.78 Aligned_cols=59 Identities=10% Similarity=0.116 Sum_probs=36.9
Q ss_pred CcEEEEeCCCCcch----HHHHHHHHHhcCCC-ceeeecCccCCCCCCCCCCCcHHHHHHHHHhh
Q psy5980 43 PFKLLINSMHGVTG----PYVKKIFLEELGAQ-PDNAVNTTPLPDFGGHHPDPNLTYAADLVQAM 102 (103)
Q Consensus 43 ~lkVvvD~~nGa~~----~~~~~ll~~~lG~~-~v~~i~~~~Dg~F~g~~PeP~~~nL~~L~~~V 102 (103)
++.|++||.|+.|. ..++..-- .+|++ -+++.|.+||-..+.+.--=.++.+.+|.+.+
T Consensus 262 ~lPVi~d~sH~~G~~~~v~~~a~AAv-A~GAdGliIE~H~~pd~alsD~~~sl~p~e~~~lv~~i 325 (335)
T PRK08673 262 HLPVIVDPSHATGKRDLVEPLALAAV-AAGADGLIVEVHPDPEKALSDGPQSLTPEEFEELMKKL 325 (335)
T ss_pred CCCEEEeCCCCCccccchHHHHHHHH-HhCCCEEEEEecCCcccCCCcchhcCCHHHHHHHHHHH
Confidence 68999999999885 12223333 67873 17788888888875442112245666665543
No 43
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=78.13 E-value=3.6 Score=34.32 Aligned_cols=44 Identities=11% Similarity=0.209 Sum_probs=33.3
Q ss_pred EecChHHHHHHHHhhcCchhHHhhhhCCCCCCCcEEEEeCCCCcchHHHHHHHH
Q psy5980 11 VIDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINSMHGVTGPYVKKIFL 64 (103)
Q Consensus 11 ~~D~~~~Yi~~l~~~id~~~i~~~~~~~~~~~~lkVvvD~~nGa~~~~~~~ll~ 64 (103)
..+-...|+++|.+.+.... .. ...++++|-+.|+|+ +...++.
T Consensus 94 F~~Ga~~Yid~i~~~~~~~~-~~--------g~iR~~LDvGcG~aS-F~a~l~~ 137 (506)
T PF03141_consen 94 FPHGADHYIDQIAEMIPLIK-WG--------GGIRTALDVGCGVAS-FGAYLLE 137 (506)
T ss_pred ccCCHHHHHHHHHHHhhccc-cC--------CceEEEEeccceeeh-hHHHHhh
Confidence 35577899999999986421 11 179999999999999 6666665
No 44
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=74.99 E-value=11 Score=28.77 Aligned_cols=59 Identities=15% Similarity=0.214 Sum_probs=33.9
Q ss_pred CcEEEEeCCCCcch----HHHHHHHHHhcCCC-ceeeecCccCCCCCCCCCCCcHHHHHHHHHhh
Q psy5980 43 PFKLLINSMHGVTG----PYVKKIFLEELGAQ-PDNAVNTTPLPDFGGHHPDPNLTYAADLVQAM 102 (103)
Q Consensus 43 ~lkVvvD~~nGa~~----~~~~~ll~~~lG~~-~v~~i~~~~Dg~F~g~~PeP~~~nL~~L~~~V 102 (103)
++.|++||.|+.|. ......-. .+|++ -+++.|.+||-.-+-|.--=.++.+++|.+.+
T Consensus 196 ~~pV~~D~sHs~G~~~~v~~~~~aAv-a~Ga~Gl~iE~H~~pd~a~~D~~~sl~p~~l~~l~~~i 259 (266)
T PRK13398 196 HLPIIVDPSHATGRRELVIPMAKAAI-AAGADGLMIEVHPEPEKALSDARQTLNFEEMKELVDEL 259 (266)
T ss_pred CCCEEEeCCCcccchhhHHHHHHHHH-HcCCCEEEEeccCCccccCCchhhcCCHHHHHHHHHHH
Confidence 68899999999882 12222222 66863 16677777776664332111245566665543
No 45
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=68.40 E-value=32 Score=25.93 Aligned_cols=59 Identities=14% Similarity=0.164 Sum_probs=36.5
Q ss_pred CcEEEEeCCCCcch----HHHHHHHHHhcCCCc-eeeecCccCCCCCCCCCCCcHHHHHHHHHhh
Q psy5980 43 PFKLLINSMHGVTG----PYVKKIFLEELGAQP-DNAVNTTPLPDFGGHHPDPNLTYAADLVQAM 102 (103)
Q Consensus 43 ~lkVvvD~~nGa~~----~~~~~ll~~~lG~~~-v~~i~~~~Dg~F~g~~PeP~~~nL~~L~~~V 102 (103)
++.|++|+.|..|. ..++..-. .+|++- +++.|.++|-..+.|.--=.++.|++|.+.+
T Consensus 194 ~~pV~~ds~Hs~G~r~~~~~~~~aAv-a~Ga~gl~iE~H~t~d~a~~D~~~sl~p~~l~~lv~~i 257 (260)
T TIGR01361 194 HLPIIVDPSHAAGRRDLVIPLAKAAI-AAGADGLMIEVHPDPEKALSDSKQQLTPEEFKRLVKEL 257 (260)
T ss_pred CCCEEEcCCCCCCccchHHHHHHHHH-HcCCCEEEEEeCCCccccCCcchhcCCHHHHHHHHHHH
Confidence 68999999998771 23333333 778731 6788888887775442111246666666544
No 46
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=65.10 E-value=3.4 Score=31.69 Aligned_cols=11 Identities=9% Similarity=0.356 Sum_probs=10.2
Q ss_pred CcEEEEeCCCC
Q psy5980 43 PFKLLINSMHG 53 (103)
Q Consensus 43 ~lkVvvD~~nG 53 (103)
.+.|++|+.|+
T Consensus 175 ~~PVi~DpSHs 185 (258)
T TIGR01362 175 GCPVIFDATHS 185 (258)
T ss_pred CCCEEEeCCcc
Confidence 68999999997
No 47
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=64.30 E-value=37 Score=25.82 Aligned_cols=57 Identities=16% Similarity=0.158 Sum_probs=32.7
Q ss_pred CcEEEEeCCCCcch----HHHHHHHHHhcCCCc--eeeecCccCCCCCCCCCCCc-HHHHHHHHHhh
Q psy5980 43 PFKLLINSMHGVTG----PYVKKIFLEELGAQP--DNAVNTTPLPDFGGHHPDPN-LTYAADLVQAM 102 (103)
Q Consensus 43 ~lkVvvD~~nGa~~----~~~~~ll~~~lG~~~--v~~i~~~~Dg~F~g~~PeP~-~~nL~~L~~~V 102 (103)
++.|++|+.|..|. ..++..-- .+|+ + +++.|.+||-..- -.|.=. ++.+.+|.+.+
T Consensus 184 ~lPVivd~SHs~G~r~~v~~~a~AAv-A~GA-dGl~IE~H~~P~~A~s-D~~q~l~~~~l~~l~~~~ 247 (250)
T PRK13397 184 DLPIIVDVSHSTGRRDLLLPAAKIAK-AVGA-NGIMMEVHPDPDHALS-DAAQQIDYKQLEQLGQEL 247 (250)
T ss_pred CCCeEECCCCCCcccchHHHHHHHHH-HhCC-CEEEEEecCCcccccC-chhhhCCHHHHHHHHHHh
Confidence 68999999999874 12222223 6677 4 5566666655532 222222 46666666543
No 48
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=63.99 E-value=8.3 Score=27.22 Aligned_cols=20 Identities=5% Similarity=0.310 Sum_probs=15.3
Q ss_pred EEEEeCCCCcchHHHHHHHH
Q psy5980 45 KLLINSMHGVTGPYVKKIFL 64 (103)
Q Consensus 45 kVvvD~~nGa~~~~~~~ll~ 64 (103)
.+++|+|.|+|+..+...+.
T Consensus 30 ~~vlDP~CGsGtiliEaa~~ 49 (179)
T PF01170_consen 30 DVVLDPFCGSGTILIEAALM 49 (179)
T ss_dssp S-EEETT-TTSHHHHHHHHH
T ss_pred CEEeecCCCCCHHHHHHHHH
Confidence 59999999999988777665
No 49
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=63.76 E-value=3.3 Score=31.80 Aligned_cols=11 Identities=9% Similarity=0.310 Sum_probs=10.2
Q ss_pred CcEEEEeCCCC
Q psy5980 43 PFKLLINSMHG 53 (103)
Q Consensus 43 ~lkVvvD~~nG 53 (103)
.+.|++|+.|+
T Consensus 183 ~lPVi~DpSHs 193 (264)
T PRK05198 183 GAPVIFDATHS 193 (264)
T ss_pred CCCEEEeCCcc
Confidence 68999999997
No 50
>PRK03525 crotonobetainyl-CoA:carnitine CoA-transferase; Provisional
Probab=57.72 E-value=15 Score=29.45 Aligned_cols=32 Identities=22% Similarity=0.417 Sum_probs=28.1
Q ss_pred CcEEEEeCCCCcchHHHHHHHHHhcCCCceeeecC
Q psy5980 43 PFKLLINSMHGVTGPYVKKIFLEELGAQPDNAVNT 77 (103)
Q Consensus 43 ~lkVvvD~~nGa~~~~~~~ll~~~lG~~~v~~i~~ 77 (103)
++||+ |.....++++..++|. .+|++ |+-|..
T Consensus 14 GirVl-dls~~~aGP~a~~lLA-dlGAe-VIKVE~ 45 (405)
T PRK03525 14 GLRVV-FSGIEIAGPFAGQMFA-EWGAE-VIWIEN 45 (405)
T ss_pred CCEEE-EecchhHHHHHHHHHH-HcCCc-EEEECC
Confidence 57877 9999999999999999 99996 888863
No 51
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=55.21 E-value=5.9 Score=30.85 Aligned_cols=11 Identities=9% Similarity=0.205 Sum_probs=10.2
Q ss_pred CcEEEEeCCCC
Q psy5980 43 PFKLLINSMHG 53 (103)
Q Consensus 43 ~lkVvvD~~nG 53 (103)
.+.|++|+-|+
T Consensus 189 ~lPVI~DpSHs 199 (290)
T PLN03033 189 NCPVVADITHS 199 (290)
T ss_pred CCCEEEeCCcc
Confidence 78999999996
No 52
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=52.06 E-value=52 Score=24.51 Aligned_cols=75 Identities=16% Similarity=0.133 Sum_probs=42.1
Q ss_pred HHHHHHHHhhcCchhHHhhhhCCCCCCCcEEEEeCCCCcchHHHHHHHHHhcCCC---ceeeecCccCCCCCCCCCCCcH
Q psy5980 16 EVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINSMHGVTGPYVKKIFLEELGAQ---PDNAVNTTPLPDFGGHHPDPNL 92 (103)
Q Consensus 16 ~~Yi~~l~~~id~~~i~~~~~~~~~~~~lkVvvD~~nGa~~~~~~~ll~~~lG~~---~v~~i~~~~Dg~F~g~~PeP~~ 92 (103)
..|.+.|.+.+.-.... .++.|.++.-+|+|-..+-..+.+.+.-. ....++- |+.--....++..
T Consensus 2 ~~~a~~la~~I~~~~~~---------~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~f--n~w~~~~~~~~~~ 70 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSD---------DPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYF--NAWEYDGEDDLWA 70 (325)
T ss_pred hHHHHHHHHHHhccCCC---------CCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEE--ccccCCCcchHHH
Confidence 56888888776532111 17999999999999766655555455422 1222222 3332233355555
Q ss_pred HHHHHHHHh
Q psy5980 93 TYAADLVQA 101 (103)
Q Consensus 93 ~nL~~L~~~ 101 (103)
.-+.++.+.
T Consensus 71 ~~~~~l~~~ 79 (325)
T PF07693_consen 71 SFLEELFDQ 79 (325)
T ss_pred HHHHHHHHH
Confidence 555555443
No 53
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=48.48 E-value=36 Score=26.09 Aligned_cols=33 Identities=21% Similarity=0.324 Sum_probs=25.6
Q ss_pred CcEEEEeCCCCcchHHHHHHHHHhcCCCceeeecCcc
Q psy5980 43 PFKLLINSMHGVTGPYVKKIFLEELGAQPDNAVNTTP 79 (103)
Q Consensus 43 ~lkVvvD~~nGa~~~~~~~ll~~~lG~~~v~~i~~~~ 79 (103)
+.-|+||++=|+.+...... ++||+ -+.+|...
T Consensus 182 ~VPviVDAGiG~pSdAa~aM---ElG~D-aVL~NTAi 214 (262)
T COG2022 182 DVPVIVDAGIGTPSDAAQAM---ELGAD-AVLLNTAI 214 (262)
T ss_pred CCCEEEeCCCCChhHHHHHH---hcccc-eeehhhHh
Confidence 46799999999999765443 78997 66888764
No 54
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=47.59 E-value=34 Score=26.53 Aligned_cols=32 Identities=22% Similarity=0.384 Sum_probs=22.9
Q ss_pred EEEEeCCCCcchHHHHHHHHHhcC--CCceeeecCcc
Q psy5980 45 KLLINSMHGVTGPYVKKIFLEELG--AQPDNAVNTTP 79 (103)
Q Consensus 45 kVvvD~~nGa~~~~~~~ll~~~lG--~~~v~~i~~~~ 79 (103)
.+++||..|.|+ ....+++ .++ . .++.+..++
T Consensus 21 ~~vlD~TlG~GG-hS~~il~-~~~~~g-~VigiD~D~ 54 (296)
T PRK00050 21 GIYVDGTFGGGG-HSRAILE-RLGPKG-RLIAIDRDP 54 (296)
T ss_pred CEEEEeCcCChH-HHHHHHH-hCCCCC-EEEEEcCCH
Confidence 489999999988 5667776 764 3 366665544
No 55
>COG0860 AmiC N-acetylmuramoyl-L-alanine amidase [Cell envelope biogenesis, outer membrane]
Probab=46.75 E-value=13 Score=27.69 Aligned_cols=12 Identities=25% Similarity=0.340 Sum_probs=10.5
Q ss_pred CcEEEEeCCCCc
Q psy5980 43 PFKLLINSMHGV 54 (103)
Q Consensus 43 ~lkVvvD~~nGa 54 (103)
..+|++|++||-
T Consensus 42 ~~~I~IDpGHGG 53 (231)
T COG0860 42 GKTIVIDPGHGG 53 (231)
T ss_pred CeEEEEcCCCCC
Confidence 489999999983
No 56
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=45.51 E-value=17 Score=28.26 Aligned_cols=11 Identities=9% Similarity=0.404 Sum_probs=10.1
Q ss_pred CcEEEEeCCCC
Q psy5980 43 PFKLLINSMHG 53 (103)
Q Consensus 43 ~lkVvvD~~nG 53 (103)
.+.|++|+-|+
T Consensus 191 ~lPVi~DpSHs 201 (281)
T PRK12457 191 DLPVIFDVTHS 201 (281)
T ss_pred CCCEEEeCCcc
Confidence 58999999997
No 57
>PRK10319 N-acetylmuramoyl-l-alanine amidase I; Provisional
Probab=44.21 E-value=17 Score=28.05 Aligned_cols=11 Identities=18% Similarity=0.413 Sum_probs=9.5
Q ss_pred CcEEEEeCCCC
Q psy5980 43 PFKLLINSMHG 53 (103)
Q Consensus 43 ~lkVvvD~~nG 53 (103)
+..||+|++||
T Consensus 56 ~~~IvIDpGHG 66 (287)
T PRK10319 56 KRVVMLDPGHG 66 (287)
T ss_pred CeEEEEECCCC
Confidence 46789999998
No 58
>PRK07308 flavodoxin; Validated
Probab=42.16 E-value=83 Score=20.90 Aligned_cols=22 Identities=23% Similarity=0.132 Sum_probs=18.2
Q ss_pred CcEEEEeCCCCcchHHHHHHHH
Q psy5980 43 PFKLLINSMHGVTGPYVKKIFL 64 (103)
Q Consensus 43 ~lkVvvD~~nGa~~~~~~~ll~ 64 (103)
.++|++.+++|.+..++..+-+
T Consensus 3 ~~~IvY~S~tGnTe~iA~~ia~ 24 (146)
T PRK07308 3 LAKIVYASMTGNTEEIADIVAD 24 (146)
T ss_pred eEEEEEECCCchHHHHHHHHHH
Confidence 4789999999999988876644
No 59
>KOG1622|consensus
Probab=41.52 E-value=65 Score=27.09 Aligned_cols=53 Identities=13% Similarity=0.154 Sum_probs=36.9
Q ss_pred cEEEEeCCCCcchHHHHHHHHHhcCCCceeeecCccCCCCCCCCCCCcHHHHHH
Q psy5980 44 FKLLINSMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDPNLTYAAD 97 (103)
Q Consensus 44 lkVvvD~~nGa~~~~~~~ll~~~lG~~~v~~i~~~~Dg~F~g~~PeP~~~nL~~ 97 (103)
-+|++=...|+.+.+...++++.+|+.+++.++-+ +|.-.-...+=.++.|..
T Consensus 231 ~~Vl~~vSGgvdStV~a~Ll~~alg~~R~~ai~vd-NG~mrk~Ea~~V~~tl~~ 283 (552)
T KOG1622|consen 231 YKVLVAVSGGVDSTVCAALLRRALGPDRVHAIHVD-NGFMRKKEAEQVEKTLVY 283 (552)
T ss_pred cceEEEecCCchHHHHHHHHHHhhCCCceEEEEec-ccchhhhHHHHHHHHHHH
Confidence 57888888899999999999988898778777653 444433344444455544
No 60
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=41.01 E-value=1.3e+02 Score=23.84 Aligned_cols=57 Identities=12% Similarity=0.208 Sum_probs=30.5
Q ss_pred CcEEEEeCCCCcch-HH---HHHHHHHhcCCC-ceeeecCccCCCCCCC-CCCC-cHHHHHHHHHhh
Q psy5980 43 PFKLLINSMHGVTG-PY---VKKIFLEELGAQ-PDNAVNTTPLPDFGGH-HPDP-NLTYAADLVQAM 102 (103)
Q Consensus 43 ~lkVvvD~~nGa~~-~~---~~~ll~~~lG~~-~v~~i~~~~Dg~F~g~-~PeP-~~~nL~~L~~~V 102 (103)
++.|++|+.|..|. .+ ++..-- .+|++ .+++.|. ||.=++- ++.- .++.|..|.+.+
T Consensus 287 ~~PV~~d~~Hs~G~r~~~~~~a~aAv-a~GAdg~~iE~H~--dp~~a~~D~~~sl~p~el~~l~~~i 350 (360)
T PRK12595 287 HLPVMVDVTHSTGRRDLLLPTAKAAL-AIGADGVMAEVHP--DPAVALSDSAQQMDIPEFDRFLDEL 350 (360)
T ss_pred CCCEEEeCCCCCcchhhHHHHHHHHH-HcCCCeEEEEecC--CCCCCCCchhhhCCHHHHHHHHHHH
Confidence 67899999998761 12 222223 67873 2556565 5544431 1221 145566665543
No 61
>PRK10431 N-acetylmuramoyl-l-alanine amidase II; Provisional
Probab=40.83 E-value=18 Score=29.68 Aligned_cols=11 Identities=27% Similarity=0.468 Sum_probs=10.1
Q ss_pred CcEEEEeCCCC
Q psy5980 43 PFKLLINSMHG 53 (103)
Q Consensus 43 ~lkVvvD~~nG 53 (103)
++.||+|+|||
T Consensus 191 ~~vIvIDpGHG 201 (445)
T PRK10431 191 KVIIAIDAGHG 201 (445)
T ss_pred CeEEEEeCCCC
Confidence 58899999998
No 62
>TIGR02883 spore_cwlD N-acetylmuramoyl-L-alanine amidase CwlD. Members of this protein family are the CwlD family of N-acetylmuramoyl-L-alanine amidase. This family has been called the germination-specific N-acetylmuramoyl-L-alanine amidase. CwlD is required, along with the putative deactylase PdaA, to make muramic delta-lactam, a novel peptidoglycan constituent found only in spores. CwlD mutants show a germination defect.
Probab=40.61 E-value=18 Score=25.66 Aligned_cols=9 Identities=33% Similarity=0.674 Sum_probs=8.2
Q ss_pred EEEEeCCCC
Q psy5980 45 KLLINSMHG 53 (103)
Q Consensus 45 kVvvD~~nG 53 (103)
+|++|++||
T Consensus 2 ~I~iDpGHG 10 (189)
T TIGR02883 2 IIVIDPGHG 10 (189)
T ss_pred EEEEeCCCC
Confidence 699999998
No 63
>PRK06153 hypothetical protein; Provisional
Probab=40.37 E-value=75 Score=25.85 Aligned_cols=53 Identities=9% Similarity=0.056 Sum_probs=36.1
Q ss_pred hHHHHHHHHhhcCchhHHhhhhCCCCCCCcEEEEeCCCCcchHHHHHHHHHhcCCCceeee
Q psy5980 15 VEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINSMHGVTGPYVKKIFLEELGAQPDNAV 75 (103)
Q Consensus 15 ~~~Yi~~l~~~id~~~i~~~~~~~~~~~~lkVvvD~~nGa~~~~~~~ll~~~lG~~~v~~i 75 (103)
.=.|.+.+.+...+..+++.++ +.+|+|=...|.|+.++ ..|. ++|+.+++.+
T Consensus 154 vf~y~dt~s~R~~i~~~q~kL~------~~~VaIVG~GG~GS~Va-~~LA-R~GVgeI~LV 206 (393)
T PRK06153 154 VFNYPDTASSRAGIGALSAKLE------GQRIAIIGLGGTGSYIL-DLVA-KTPVREIHLF 206 (393)
T ss_pred ceehhhhhccccChHHHHHHHh------hCcEEEEcCCccHHHHH-HHHH-HcCCCEEEEE
Confidence 3357788777766655555444 47899988889998555 5666 7788655544
No 64
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=40.34 E-value=71 Score=25.92 Aligned_cols=51 Identities=22% Similarity=0.175 Sum_probs=34.3
Q ss_pred ChHHHHHHHHhhcCchhHHhhhhCCCCCCCcEEEEeCCCCcchHHHHHHHHH--hcCCCceeeecCcc
Q psy5980 14 SVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINSMHGVTGPYVKKIFLE--ELGAQPDNAVNTTP 79 (103)
Q Consensus 14 ~~~~Yi~~l~~~id~~~i~~~~~~~~~~~~lkVvvD~~nGa~~~~~~~ll~~--~lG~~~v~~i~~~~ 79 (103)
+.+.|.++....-.- +.-|+.|+|||.+...+..+-+. +-|+. +..++++-
T Consensus 233 i~~~Y~~W~~~~~~~--------------~V~l~Y~smyg~T~~ma~aiaegl~~~gv~-v~~~~~~~ 285 (388)
T COG0426 233 IVEAYRDWAEGQPKG--------------KVDLIYDSMYGNTEKMAQAIAEGLMKEGVD-VEVINLED 285 (388)
T ss_pred HHHHHHHHHccCCcc--------------eEEEEEecccCCHHHHHHHHHHHhhhcCCc-eEEEEccc
Confidence 556777776554320 37799999999999877766441 33764 77777764
No 65
>PRK06756 flavodoxin; Provisional
Probab=39.82 E-value=95 Score=20.61 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=17.5
Q ss_pred CcEEEEeCCCCcchHHHHHHHH
Q psy5980 43 PFKLLINSMHGVTGPYVKKIFL 64 (103)
Q Consensus 43 ~lkVvvD~~nGa~~~~~~~ll~ 64 (103)
+..|++.+++|.+.-++..+-+
T Consensus 3 kv~IiY~S~tGnTe~vA~~ia~ 24 (148)
T PRK06756 3 KLVMIFASMSGNTEEMADHIAG 24 (148)
T ss_pred eEEEEEECCCchHHHHHHHHHH
Confidence 4789999999999877776644
No 66
>PF10642 Tom5: Mitochondrial import receptor subunit or translocase; InterPro: IPR019603 This entry represents a short family of yeast proteins. Tom5 is one of three very small translocases of the mitochondrial outer membrane. Tom5 links mitochondrial preprotein receptors to the general import pore []. Although Tom5 has allegedly been identified in vertebrates this could not be confirmed.
Probab=39.33 E-value=40 Score=19.42 Aligned_cols=17 Identities=29% Similarity=0.466 Sum_probs=12.4
Q ss_pred CCCCCCCCCcHHHHHHH
Q psy5980 82 DFGGHHPDPNLTYAADL 98 (103)
Q Consensus 82 ~F~g~~PeP~~~nL~~L 98 (103)
.|+|.+|+|+++-++..
T Consensus 1 MFgg~~~qpS~eE~k~~ 17 (49)
T PF10642_consen 1 MFGGPPPQPSEEEIKAA 17 (49)
T ss_pred CCCCCCCCCCHHHHHHH
Confidence 38887899998766543
No 67
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=38.56 E-value=53 Score=26.52 Aligned_cols=35 Identities=17% Similarity=0.280 Sum_probs=23.1
Q ss_pred cEEEEeCCCCcchHHHHHHHHHhcCCCceee----------ecCccCCCC
Q psy5980 44 FKLLINSMHGVTGPYVKKIFLEELGAQPDNA----------VNTTPLPDF 83 (103)
Q Consensus 44 lkVvvD~~nGa~~~~~~~ll~~~lG~~~v~~----------i~~~~Dg~F 83 (103)
--|++|+ |+=..++..+.+ -||. ++. +.-+|||.|
T Consensus 181 ~Vv~iD~--GvK~nIlr~L~~--rg~~-vtVVP~~t~~eeIl~~~pDGif 225 (368)
T COG0505 181 HVVVIDF--GVKRNILRELVK--RGCR-VTVVPADTSAEEILALNPDGIF 225 (368)
T ss_pred EEEEEEc--CccHHHHHHHHH--CCCe-EEEEcCCCCHHHHHhhCCCEEE
Confidence 3477897 666777766654 3674 322 456789988
No 68
>PRK05398 formyl-coenzyme A transferase; Provisional
Probab=38.27 E-value=31 Score=27.65 Aligned_cols=32 Identities=22% Similarity=0.333 Sum_probs=27.0
Q ss_pred CcEEEEeCCCCcchHHHHHHHHHhcCCCceeeecC
Q psy5980 43 PFKLLINSMHGVTGPYVKKIFLEELGAQPDNAVNT 77 (103)
Q Consensus 43 ~lkVvvD~~nGa~~~~~~~ll~~~lG~~~v~~i~~ 77 (103)
++| |+|..+..++++..++|. .+|++ |+-+..
T Consensus 7 Gir-Vldls~~~aGP~a~~lLA-dlGA~-VIKVE~ 38 (416)
T PRK05398 7 GIK-VLDFTHVQSGPSCTQLLA-WFGAD-VIKVER 38 (416)
T ss_pred CCE-EEEeccHHHHHHHHHHHH-HcCCC-EEEecC
Confidence 355 579999999999999999 99996 888764
No 69
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=36.95 E-value=66 Score=25.24 Aligned_cols=35 Identities=17% Similarity=0.171 Sum_probs=22.0
Q ss_pred cEEEEeCCCCcchHHHHHHHHHhcCCCceeeecCccC
Q psy5980 44 FKLLINSMHGVTGPYVKKIFLEELGAQPDNAVNTTPL 80 (103)
Q Consensus 44 lkVvvD~~nGa~~~~~~~ll~~~lG~~~v~~i~~~~D 80 (103)
-.+.|||-.|.|| ....+|+ .++-..++.+..+++
T Consensus 21 ~g~~vD~T~G~GG-HS~aiL~-~~~~~~li~~DrD~~ 55 (310)
T PF01795_consen 21 GGIYVDCTFGGGG-HSKAILE-KLPNGRLIGIDRDPE 55 (310)
T ss_dssp T-EEEETT-TTSH-HHHHHHH-T-TT-EEEEEES-HH
T ss_pred CceEEeecCCcHH-HHHHHHH-hCCCCeEEEecCCHH
Confidence 4699999999988 6788888 664223666655443
No 70
>PRK11430 putative CoA-transferase; Provisional
Probab=35.87 E-value=49 Score=26.30 Aligned_cols=32 Identities=22% Similarity=0.446 Sum_probs=27.0
Q ss_pred CcEEEEeCCCCcchHHHHHHHHHhcCCCceeeecC
Q psy5980 43 PFKLLINSMHGVTGPYVKKIFLEELGAQPDNAVNT 77 (103)
Q Consensus 43 ~lkVvvD~~nGa~~~~~~~ll~~~lG~~~v~~i~~ 77 (103)
++| |+|.....++++..++|. .+|++ |+-|..
T Consensus 12 Gir-Vldls~~~aGP~a~~~LA-dlGAe-VIKVE~ 43 (381)
T PRK11430 12 GLL-VIDMTHVLNGPFGTQLLC-NMGAR-VIKVEP 43 (381)
T ss_pred CCE-EEEeCCcchHHHHHHHHH-HcCCC-EEEECC
Confidence 344 679999999999999999 99996 888764
No 71
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=35.78 E-value=77 Score=24.72 Aligned_cols=17 Identities=6% Similarity=0.231 Sum_probs=14.5
Q ss_pred CcEEEEeCCCCcchHHH
Q psy5980 43 PFKLLINSMHGVTGPYV 59 (103)
Q Consensus 43 ~lkVvvD~~nGa~~~~~ 59 (103)
.|-|++|+.|++|..-+
T Consensus 214 HLPVivDpSH~~Grr~l 230 (286)
T COG2876 214 HLPVIVDPSHATGRRDL 230 (286)
T ss_pred CCCEEECCCCcccchhh
Confidence 79999999999996543
No 72
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=35.27 E-value=64 Score=24.92 Aligned_cols=30 Identities=20% Similarity=0.108 Sum_probs=18.0
Q ss_pred cEEEEeCCCCcchHHHHHHHHHhcCCCceeeec
Q psy5980 44 FKLLINSMHGVTGPYVKKIFLEELGAQPDNAVN 76 (103)
Q Consensus 44 lkVvvD~~nGa~~~~~~~ll~~~lG~~~v~~i~ 76 (103)
-+-|+|.+.|+|- +.-.-. +||+..+..+.
T Consensus 162 g~~vLDvG~GSGI--LaiaA~-klGA~~v~a~D 191 (295)
T PF06325_consen 162 GKRVLDVGCGSGI--LAIAAA-KLGAKKVVAID 191 (295)
T ss_dssp TSEEEEES-TTSH--HHHHHH-HTTBSEEEEEE
T ss_pred CCEEEEeCCcHHH--HHHHHH-HcCCCeEEEec
Confidence 3688999777554 443334 77886555543
No 73
>KOG1198|consensus
Probab=35.19 E-value=1e+02 Score=24.22 Aligned_cols=59 Identities=14% Similarity=0.087 Sum_probs=32.8
Q ss_pred CcEEEEeCCCCcchHHHHHHHHHhcCCCceeeecC------------------------ccCCCCCCCCCCCcHHHHHHH
Q psy5980 43 PFKLLINSMHGVTGPYVKKIFLEELGAQPDNAVNT------------------------TPLPDFGGHHPDPNLTYAADL 98 (103)
Q Consensus 43 ~lkVvvD~~nGa~~~~~~~ll~~~lG~~~v~~i~~------------------------~~Dg~F~g~~PeP~~~nL~~L 98 (103)
++-+|+||..|.........+. .-|-..++.+-. .....|......|..+.++.+
T Consensus 225 ~~DvVlD~vg~~~~~~~~~~l~-~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 303 (347)
T KOG1198|consen 225 GVDVVLDCVGGSTLTKSLSCLL-KGGGGAYIGLVGDELANYKLDDLWQSANGIKLYSLGLKGVNYRWLYFVPSAEYLKAL 303 (347)
T ss_pred CccEEEECCCCCccccchhhhc-cCCceEEEEeccccccccccccchhhhhhhhheeeeeeccceeeeeecCCHHHHHHH
Confidence 6899999999965433333333 222101222111 223455556678887777777
Q ss_pred HHhh
Q psy5980 99 VQAM 102 (103)
Q Consensus 99 ~~~V 102 (103)
.+.|
T Consensus 304 ~~~i 307 (347)
T KOG1198|consen 304 VELI 307 (347)
T ss_pred HHHH
Confidence 7665
No 74
>TIGR03253 oxalate_frc formyl-CoA transferase. This enzyme, formyl-CoA transferase, transfers coenzyme A from formyl-CoA to oxalate. It forms a pathway, together with oxalyl-CoA decarboxylase, for oxalate degradation; decarboxylation by the latter gene regenerates formyl-CoA. The two enzymes typically are encoded by a two-gene operon.
Probab=34.81 E-value=40 Score=27.00 Aligned_cols=31 Identities=23% Similarity=0.376 Sum_probs=26.6
Q ss_pred cEEEEeCCCCcchHHHHHHHHHhcCCCceeeecC
Q psy5980 44 FKLLINSMHGVTGPYVKKIFLEELGAQPDNAVNT 77 (103)
Q Consensus 44 lkVvvD~~nGa~~~~~~~ll~~~lG~~~v~~i~~ 77 (103)
+| |+|..+..++++..++|. .+|++ |+-|..
T Consensus 7 ir-Vldls~~~aGP~a~~lLA-dlGAe-VIKVE~ 37 (415)
T TIGR03253 7 IK-VLDFTHVQSGPSCTQMLA-WLGAD-VIKIER 37 (415)
T ss_pred CE-EEEeCcHHHHHHHHHHHH-HcCCc-EEEeCC
Confidence 44 679999999999999999 99996 888864
No 75
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=33.87 E-value=62 Score=22.10 Aligned_cols=27 Identities=19% Similarity=0.340 Sum_probs=18.9
Q ss_pred cEEEEeCCCCcchHHHHHHHHHhcCCCceeeec
Q psy5980 44 FKLLINSMHGVTGPYVKKIFLEELGAQPDNAVN 76 (103)
Q Consensus 44 lkVvvD~~nGa~~~~~~~ll~~~lG~~~v~~i~ 76 (103)
.|+++|.|-| + +.+.|+ .+|.+ +...+
T Consensus 1 ~rfl~D~~L~--~--Lar~LR-~lG~D-t~~~~ 27 (147)
T PF01927_consen 1 MRFLVDAMLG--R--LARWLR-LLGYD-TLYSR 27 (147)
T ss_pred CEEEEeCCHH--H--HHHHHH-HCCCc-EEEeC
Confidence 3789999985 2 457788 89986 54443
No 76
>KOG1500|consensus
Probab=32.52 E-value=87 Score=25.70 Aligned_cols=31 Identities=19% Similarity=0.178 Sum_probs=19.7
Q ss_pred CcEEEEeCCCCcchHHHHHHHHHhcCCCceeeec
Q psy5980 43 PFKLLINSMHGVTGPYVKKIFLEELGAQPDNAVN 76 (103)
Q Consensus 43 ~lkVvvD~~nGa~~~~~~~ll~~~lG~~~v~~i~ 76 (103)
.=|||+|.+.| ++++.-.-. ..|+..+..+.
T Consensus 177 ~~kiVlDVGaG--SGILS~FAa-qAGA~~vYAvE 207 (517)
T KOG1500|consen 177 QDKIVLDVGAG--SGILSFFAA-QAGAKKVYAVE 207 (517)
T ss_pred CCcEEEEecCC--ccHHHHHHH-HhCcceEEEEe
Confidence 35899998655 666665544 66776555443
No 77
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies.
Probab=32.26 E-value=58 Score=26.48 Aligned_cols=24 Identities=17% Similarity=0.095 Sum_probs=20.6
Q ss_pred CcEEEEeCCCCcchHHHHHHHHHhc
Q psy5980 43 PFKLLINSMHGVTGPYVKKIFLEEL 67 (103)
Q Consensus 43 ~lkVvvD~~nGa~~~~~~~ll~~~l 67 (103)
.+-++...+.|+|+|+.+.+++ ++
T Consensus 128 gf~~~~sl~GGtGSG~gs~l~e-~l 151 (446)
T cd02189 128 GFLVLHSLAGGTGSGLGSRVTE-LL 151 (446)
T ss_pred ceEEEecCCCCcchHHHHHHHH-HH
Confidence 5889999999999999888876 54
No 78
>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....
Probab=32.19 E-value=59 Score=22.01 Aligned_cols=29 Identities=21% Similarity=0.257 Sum_probs=24.8
Q ss_pred CcEEEEeCCCCcchHHHHHHHHHhcCCCcee
Q psy5980 43 PFKLLINSMHGVTGPYVKKIFLEELGAQPDN 73 (103)
Q Consensus 43 ~lkVvvD~~nGa~~~~~~~ll~~~lG~~~v~ 73 (103)
+++|+|-.+.|.+++|...-.. +.|+. +.
T Consensus 27 G~~V~VE~gaG~~a~fsD~~Y~-~aGA~-I~ 55 (136)
T PF05222_consen 27 GHEVLVESGAGEGAGFSDEEYE-EAGAE-IV 55 (136)
T ss_dssp TSEEEEETTTTGGGTB-HHHHH-HTTEE-EE
T ss_pred CCEEEEECCCCCcCcccHHHHh-hCCcE-Ee
Confidence 6899999999999999999998 88974 54
No 79
>PLN02790 transketolase
Probab=31.80 E-value=39 Score=28.88 Aligned_cols=43 Identities=16% Similarity=0.179 Sum_probs=27.8
Q ss_pred CcEEEEeCCCCcchHHHHHHHHHhcCC-----CceeeecCccCCCCCCCCCCC
Q psy5980 43 PFKLLINSMHGVTGPYVKKIFLEELGA-----QPDNAVNTTPLPDFGGHHPDP 90 (103)
Q Consensus 43 ~lkVvvD~~nGa~~~~~~~ll~~~lG~-----~~v~~i~~~~Dg~F~g~~PeP 90 (103)
+=++|+|.+|++...|.--.+. |. +++..+ ...++.+||| ||+
T Consensus 47 rDrfvls~GH~~~~lYa~l~~~---G~~~~~~~~l~~~-r~~~s~~~gh-p~~ 94 (654)
T PLN02790 47 RDRFVLSAGHGCMLQYALLHLA---GYDSVQMEDLKQF-RQWGSRTPGH-PEN 94 (654)
T ss_pred CCEEEEeCcchHHHHHHHHHHc---CCCCCCHHHHHHh-ccCCCCCCCC-CCC
Confidence 3489999999998878655444 54 223333 3346777765 666
No 80
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation. Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts.
Probab=30.70 E-value=88 Score=23.91 Aligned_cols=22 Identities=9% Similarity=-0.123 Sum_probs=18.4
Q ss_pred CcEEEEeCCCCcchHHHHHHHH
Q psy5980 43 PFKLLINSMHGVTGPYVKKIFL 64 (103)
Q Consensus 43 ~lkVvvD~~nGa~~~~~~~ll~ 64 (103)
.+-++.+.+.|+|+++.+.+++
T Consensus 91 gf~i~~slgGGTGsG~~~~i~e 112 (328)
T cd00286 91 GFFITHSLGGGTGSGLGPVLAE 112 (328)
T ss_pred ceEEEeecCCCccccHHHHHHH
Confidence 5889999999999888877755
No 81
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=29.82 E-value=67 Score=24.56 Aligned_cols=40 Identities=25% Similarity=0.362 Sum_probs=25.7
Q ss_pred CcEEEEeCCCCcchHHHHHHHHHhcCCCceeeecCccCCCCCCCCCCCc
Q psy5980 43 PFKLLINSMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDPN 91 (103)
Q Consensus 43 ~lkVvvD~~nGa~~~~~~~ll~~~lG~~~v~~i~~~~Dg~F~g~~PeP~ 91 (103)
+..|+||++=|+.+...... ++|++ -+.+|... -...+|.
T Consensus 175 ~vPvIvDAGiG~pSdaa~AM---ElG~d-aVLvNTAi-----A~A~dPv 214 (247)
T PF05690_consen 175 DVPVIVDAGIGTPSDAAQAM---ELGAD-AVLVNTAI-----AKAKDPV 214 (247)
T ss_dssp SSSBEEES---SHHHHHHHH---HTT-S-EEEESHHH-----HTSSSHH
T ss_pred CCcEEEeCCCCCHHHHHHHH---HcCCc-eeehhhHH-----hccCCHH
Confidence 47899999999999765443 78997 66888765 2455664
No 82
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=29.44 E-value=1.4e+02 Score=19.77 Aligned_cols=33 Identities=3% Similarity=0.032 Sum_probs=22.2
Q ss_pred CcEEEEeCCCCcchHHHHHHHHH-----hcCCCceeeecCc
Q psy5980 43 PFKLLINSMHGVTGPYVKKIFLE-----ELGAQPDNAVNTT 78 (103)
Q Consensus 43 ~lkVvvD~~nGa~~~~~~~ll~~-----~lG~~~v~~i~~~ 78 (103)
+...+||.+ +|.+|+..+|.. ..++. +..|...
T Consensus 25 ~~~~vvD~G--sG~GyLs~~La~~l~~~~~~~~-v~~iD~~ 62 (141)
T PF13679_consen 25 RCITVVDLG--SGKGYLSRALAHLLCNSSPNLR-VLGIDCN 62 (141)
T ss_pred CCCEEEEeC--CChhHHHHHHHHHHHhcCCCCe-EEEEECC
Confidence 578999985 558889988873 23443 6666554
No 83
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=29.15 E-value=85 Score=23.80 Aligned_cols=21 Identities=14% Similarity=0.097 Sum_probs=14.1
Q ss_pred EEEEeCCCCcchHHHHHHHHHhc
Q psy5980 45 KLLINSMHGVTGPYVKKIFLEEL 67 (103)
Q Consensus 45 kVvvD~~nGa~~~~~~~ll~~~l 67 (103)
..++|.+.|+|. .+..+++ .+
T Consensus 65 ~~iLELGcGtG~-~t~~Ll~-~l 85 (301)
T TIGR03438 65 CELVELGSGSSR-KTRLLLD-AL 85 (301)
T ss_pred CeEEecCCCcch-hHHHHHH-hh
Confidence 468999999887 3444544 44
No 84
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=28.31 E-value=2e+02 Score=22.28 Aligned_cols=39 Identities=23% Similarity=0.349 Sum_probs=29.0
Q ss_pred CcEEEEeCCCCcchHHHHHHHHHhcCCCceeeecCccCCCCCCCCCCC
Q psy5980 43 PFKLLINSMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDP 90 (103)
Q Consensus 43 ~lkVvvD~~nGa~~~~~~~ll~~~lG~~~v~~i~~~~Dg~F~g~~PeP 90 (103)
+.+|++|++=|+++.....+ ++|++ -+.+|+.. + ..++|
T Consensus 189 ~vpVivdAGIgt~sDa~~Am---ElGaD-gVL~nSaI---a--kA~dP 227 (267)
T CHL00162 189 KIPVIIDAGIGTPSEASQAM---ELGAS-GVLLNTAV---A--QAKNP 227 (267)
T ss_pred CCcEEEeCCcCCHHHHHHHH---HcCCC-EEeeccee---e--cCCCH
Confidence 58999999999999765443 78996 66777754 1 56677
No 85
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.
Probab=27.63 E-value=73 Score=25.87 Aligned_cols=24 Identities=17% Similarity=0.088 Sum_probs=20.6
Q ss_pred CcEEEEeCCCCcchHHHHHHHHHhc
Q psy5980 43 PFKLLINSMHGVTGPYVKKIFLEEL 67 (103)
Q Consensus 43 ~lkVvvD~~nGa~~~~~~~ll~~~l 67 (103)
.+-|+...+.|+|+|+.+.+++ .|
T Consensus 132 gf~i~~SlgGGTGSG~gs~l~e-~L 155 (431)
T cd02188 132 GFVLCHSIAGGTGSGMGSYLLE-RL 155 (431)
T ss_pred eeEEEecCCCCcchhHHHHHHH-HH
Confidence 5889999999999998888876 54
No 86
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=27.54 E-value=81 Score=23.57 Aligned_cols=21 Identities=19% Similarity=0.350 Sum_probs=14.7
Q ss_pred CcEEEEeCCCCcchHHHHHHHH
Q psy5980 43 PFKLLINSMHGVTGPYVKKIFL 64 (103)
Q Consensus 43 ~lkVvvD~~nGa~~~~~~~ll~ 64 (103)
+.+-++||+-|.|. ++..+|.
T Consensus 55 ~~~~alDcGAGIGR-VTk~lLl 75 (218)
T PF05891_consen 55 KFNRALDCGAGIGR-VTKGLLL 75 (218)
T ss_dssp --SEEEEET-TTTH-HHHHTCC
T ss_pred CcceEEecccccch-hHHHHHH
Confidence 57899999999888 6666665
No 87
>PF01520 Amidase_3: N-acetylmuramoyl-L-alanine amidase; InterPro: IPR002508 The cell wall envelope of Gram-positive bacteria is a macromolecular, exoskeletal organelle that is assembled and turned over at designated sites. The cell wall also functions as a surface organelle that allows Gram-positive pathogens to interact with their environment, in particular the tissues of the infected host. All of these functions require that surface proteins and enzymes be properly targeted to the cell wall envelope. Two basic mechanisms, cell wall sorting and targeting, have been identified. Cell well sorting is the covalent attachment of surface proteins to the peptidoglycan via a C-terminal sorting signal that contains a consensus LPXTG sequence. More than 100 proteins that possess cell wall-sorting signals, including the M proteins of Streptococcus pyogenes, protein A of Staphylococcus aureus, and several internalins of Listeria monocytogenes, have been identified. Cell wall targeting involves the noncovalent attachment of proteins to the cell surface via specialised binding domains. Several of these wall-binding domains appear to interact with secondary wall polymers that are associated with the peptidoglycan, for example teichoic acids and polysaccharides. Proteins that are targeted to the cell surface include muralytic enzymes such as autolysins, lysostaphin, and phage lytic enzymes. Other examples for targeted proteins are the surface S-layer proteins of bacilli and clostridia, as well as virulence factors required for the pathogenesis of L. monocytogenes (internalin B) and Streptococcus pneumoniae (PspA) infections []. Autolysin 3.5.1.28 from EC hydrolyses the link between N-acetylmuramoyl residues and L-amino acid residues in certain bacterial cell wall glycopeptides.; GO: 0008745 N-acetylmuramoyl-L-alanine amidase activity, 0009253 peptidoglycan catabolic process; PDB: 3QAY_A 3CZX_A 1JWQ_A 1XOV_A 3NE8_A.
Probab=27.26 E-value=22 Score=24.29 Aligned_cols=9 Identities=33% Similarity=0.630 Sum_probs=7.3
Q ss_pred EEEeCCCCc
Q psy5980 46 LLINSMHGV 54 (103)
Q Consensus 46 VvvD~~nGa 54 (103)
|++|++||-
T Consensus 1 I~idpGHgg 9 (175)
T PF01520_consen 1 IVIDPGHGG 9 (175)
T ss_dssp EEEEEEEBT
T ss_pred CEEECCCCC
Confidence 788998874
No 88
>KOG3178|consensus
Probab=27.02 E-value=69 Score=25.57 Aligned_cols=24 Identities=8% Similarity=0.195 Sum_probs=19.5
Q ss_pred CcEEEEeCCCCcchHHHHHHHHHhcC
Q psy5980 43 PFKLLINSMHGVTGPYVKKIFLEELG 68 (103)
Q Consensus 43 ~lkVvvD~~nGa~~~~~~~ll~~~lG 68 (103)
.+++++||+.|.|. ++..++. ...
T Consensus 177 ~v~~avDvGgGiG~-v~k~ll~-~fp 200 (342)
T KOG3178|consen 177 GVNVAVDVGGGIGR-VLKNLLS-KYP 200 (342)
T ss_pred cCceEEEcCCcHhH-HHHHHHH-hCC
Confidence 48999999999888 6777777 654
No 89
>PRK11524 putative methyltransferase; Provisional
Probab=26.80 E-value=49 Score=24.90 Aligned_cols=24 Identities=8% Similarity=0.083 Sum_probs=17.3
Q ss_pred cEEEEeCCCCcchHHHHHHHHHhcCCC
Q psy5980 44 FKLLINSMHGVTGPYVKKIFLEELGAQ 70 (103)
Q Consensus 44 lkVvvD~~nGa~~~~~~~ll~~~lG~~ 70 (103)
=-+|+||--|+|+..+... ++|..
T Consensus 209 GD~VLDPF~GSGTT~~AA~---~lgR~ 232 (284)
T PRK11524 209 GDIVLDPFAGSFTTGAVAK---ASGRK 232 (284)
T ss_pred CCEEEECCCCCcHHHHHHH---HcCCC
Confidence 3589999999998665443 56643
No 90
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=26.77 E-value=43 Score=26.77 Aligned_cols=19 Identities=16% Similarity=0.415 Sum_probs=15.5
Q ss_pred EEEEeCCCCcchHHHHHHH
Q psy5980 45 KLLINSMHGVTGPYVKKIF 63 (103)
Q Consensus 45 kVvvD~~nGa~~~~~~~ll 63 (103)
..++||+.|+|+-.+..-|
T Consensus 199 ~~vlDPFcGTGgiLiEagl 217 (347)
T COG1041 199 ELVLDPFCGTGGILIEAGL 217 (347)
T ss_pred CEeecCcCCccHHHHhhhh
Confidence 5899999999997766544
No 91
>TIGR00034 aroFGH phospho-2-dehydro-3-deoxyheptonate aldolase.
Probab=26.53 E-value=46 Score=26.58 Aligned_cols=13 Identities=31% Similarity=0.460 Sum_probs=11.1
Q ss_pred cEEEEeCCCCcch
Q psy5980 44 FKLLINSMHGVTG 56 (103)
Q Consensus 44 lkVvvD~~nGa~~ 56 (103)
-+|+|||.||.+.
T Consensus 255 ~~vmVD~SH~ns~ 267 (344)
T TIGR00034 255 PHLMIDFSHGNSN 267 (344)
T ss_pred CeEEEeCCCcccc
Confidence 3499999999886
No 92
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=26.39 E-value=56 Score=24.25 Aligned_cols=21 Identities=14% Similarity=0.254 Sum_probs=14.6
Q ss_pred CcchHHHHHHHHHhcCCCceeee
Q psy5980 53 GVTGPYVKKIFLEELGAQPDNAV 75 (103)
Q Consensus 53 Ga~~~~~~~ll~~~lG~~~v~~i 75 (103)
|+|++|...+|. ++... |.++
T Consensus 80 GtGsGY~aAvla-~l~~~-V~si 100 (209)
T COG2518 80 GTGSGYQAAVLA-RLVGR-VVSI 100 (209)
T ss_pred CCCchHHHHHHH-HHhCe-EEEE
Confidence 777889999988 66433 5554
No 93
>cd02696 MurNAc-LAA N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino acids in certain cell wall glycopeptides. These proteins are Zn-dependent peptidases with highly conserved residues involved in cation co-ordination. MurNAc-LAA in this family is one of several peptidoglycan hydrolases (PGHs) found in bacterial and bacteriophage or prophage genomes that are involved in the degradation of the peptidoglycan. In Escherichia coli, there are five MurNAc-LAAs present: AmiA, AmiB, AmiC and AmiD that are periplasmic, and AmpD that is cytoplasmic. Three of these (AmiA, AmiB and AmiC) belong to this family, the other two (AmiD and AmpD) do not. E. coli AmiA, AmiB and AmiC play an important role in cleaving the septum to release daughter cells after cell division. In general, bacterial MurNAc-LAAs
Probab=26.39 E-value=35 Score=23.23 Aligned_cols=11 Identities=27% Similarity=0.522 Sum_probs=8.5
Q ss_pred EEEEeCCCCcc
Q psy5980 45 KLLINSMHGVT 55 (103)
Q Consensus 45 kVvvD~~nGa~ 55 (103)
+|++|++||-.
T Consensus 1 ~v~ld~GHg~~ 11 (172)
T cd02696 1 TIVIDPGHGGK 11 (172)
T ss_pred CEEEeCCCCCC
Confidence 48899998754
No 94
>TIGR00758 UDG_fam4 uracil-DNA glycosylase, family 4. This well-conserved family of proteins is about 200 residues in length and homologous to the N-terminus of the DNA polymerase of phage SPO1 of Bacillus subtilis. The member from Thermus thermophilus HB8 is known to act as uracil-DNA glycosylase, an enzyme of DNA base excision repair. Its appearance as a domain of phage DNA polymerases could be consistent with uracil-DNA glycosylase activity.
Probab=26.22 E-value=2.3e+02 Score=19.69 Aligned_cols=19 Identities=16% Similarity=0.457 Sum_probs=15.3
Q ss_pred CCCcchHHHHHHHHHhcCCC
Q psy5980 51 MHGVTGPYVKKIFLEELGAQ 70 (103)
Q Consensus 51 ~nGa~~~~~~~ll~~~lG~~ 70 (103)
..|.++..+..+|. .+|.+
T Consensus 42 f~g~sG~~L~~~l~-~~gl~ 60 (173)
T TIGR00758 42 FVGRAGKLLDEMLA-AIGLS 60 (173)
T ss_pred CcChHHHHHHHHHH-HcCCC
Confidence 45778889999998 88875
No 95
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=26.09 E-value=80 Score=22.16 Aligned_cols=27 Identities=15% Similarity=0.228 Sum_probs=17.3
Q ss_pred CcEEEEeCCCCcchH--HHH-HHHHHhcCCC
Q psy5980 43 PFKLLINSMHGVTGP--YVK-KIFLEELGAQ 70 (103)
Q Consensus 43 ~lkVvvD~~nGa~~~--~~~-~ll~~~lG~~ 70 (103)
+-+|+|-|+-|.|.. ++. .++. ..|+.
T Consensus 105 g~kVvVHC~~GigRSgtviaA~lm~-~~~~~ 134 (180)
T COG2453 105 GKKVVVHCQGGIGRSGTVIAAYLML-YGGLS 134 (180)
T ss_pred CCeEEEEcCCCCchHHHHHHHHHHH-HcCCC
Confidence 459999999998742 222 3444 54553
No 96
>PF10994 DUF2817: Protein of unknown function (DUF2817); InterPro: IPR021259 This family of proteins has no known function.
Probab=25.31 E-value=63 Score=25.59 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=20.3
Q ss_pred ecCccCCCC-CCCCCCCcHHHHHHHHHh
Q psy5980 75 VNTTPLPDF-GGHHPDPNLTYAADLVQA 101 (103)
Q Consensus 75 i~~~~Dg~F-~g~~PeP~~~nL~~L~~~ 101 (103)
=+..|||.| ||..|+++-..|+++.+.
T Consensus 175 QY~~P~GlfYGG~~p~wS~~~L~~il~~ 202 (341)
T PF10994_consen 175 QYTHPDGLFYGGTEPEWSNRTLREILRE 202 (341)
T ss_pred CcCCCCccccCCCCccHHHHHHHHHHHH
Confidence 367899987 556799998888877653
No 97
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=24.70 E-value=94 Score=22.01 Aligned_cols=29 Identities=17% Similarity=0.327 Sum_probs=17.8
Q ss_pred EEEEeCCCCcchHHHHHHHHHhcCCCceeeecC
Q psy5980 45 KLLINSMHGVTGPYVKKIFLEELGAQPDNAVNT 77 (103)
Q Consensus 45 kVvvD~~nGa~~~~~~~ll~~~lG~~~v~~i~~ 77 (103)
++++|+..|+|+..+. |. +. ++.|+.+..
T Consensus 1 ~~vlD~fcG~GGNtIq--FA-~~-~~~Viaidi 29 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQ--FA-RT-FDRVIAIDI 29 (163)
T ss_dssp SEEEETT-TTSHHHHH--HH-HT-T-EEEEEES
T ss_pred CEEEEeccCcCHHHHH--HH-Hh-CCeEEEEEC
Confidence 4799999999998764 33 22 334655543
No 98
>COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion]
Probab=24.59 E-value=2.5e+02 Score=22.78 Aligned_cols=51 Identities=24% Similarity=0.273 Sum_probs=34.5
Q ss_pred cEEEEeCCCCcc--hHHHHHHHHHhcCCCceeeecCccCCCCCCCCCCCcHHHHHHHHHhhC
Q psy5980 44 FKLLINSMHGVT--GPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDPNLTYAADLVQAMQ 103 (103)
Q Consensus 44 lkVvvD~~nGa~--~~~~~~ll~~~lG~~~v~~i~~~~Dg~F~g~~PeP~~~nL~~L~~~V~ 103 (103)
-||++=-+.|+- .++..++.. .|.-.++.+ |+|..|+|..+.+..-.+.+|
T Consensus 30 ~kVLi~YGGGSIKrnGvydqV~~-~Lkg~~~~E--------~~GVEPNP~~~Tv~kaV~i~k 82 (384)
T COG1979 30 AKVLIVYGGGSIKKNGVYDQVVE-ALKGIEVIE--------FGGVEPNPRLETLMKAVEICK 82 (384)
T ss_pred CeEEEEecCccccccchHHHHHH-HhcCceEEE--------ecCCCCCchHHHHHHHHHHHH
Confidence 578887777753 346677776 664223433 689999999888877666553
No 99
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=24.56 E-value=2.1e+02 Score=22.78 Aligned_cols=52 Identities=19% Similarity=0.228 Sum_probs=37.6
Q ss_pred hHHHHHHHHhhcCchhHHhhhhCCCCCCCcEEEEeCCCCcchHHHHHHHHHhcCCCceeeecCccCCCCCCCCCCCc
Q psy5980 15 VEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINSMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHHPDPN 91 (103)
Q Consensus 15 ~~~Yi~~l~~~id~~~i~~~~~~~~~~~~lkVvvD~~nGa~~~~~~~ll~~~lG~~~v~~i~~~~Dg~F~g~~PeP~ 91 (103)
.++|++.+.+.. +..|++|++=|+++.....+ +||++ -+.+|+..- ..++|.
T Consensus 237 ~p~~i~~~~e~~----------------~vpVivdAGIg~~sda~~Am---elGad-gVL~nSaIa-----~a~dPv 288 (326)
T PRK11840 237 NPYTIRLIVEGA----------------TVPVLVDAGVGTASDAAVAM---ELGCD-GVLMNTAIA-----EAKNPV 288 (326)
T ss_pred CHHHHHHHHHcC----------------CCcEEEeCCCCCHHHHHHHH---HcCCC-EEEEcceec-----cCCCHH
Confidence 466666666652 47899999999999765443 78996 668887652 567775
No 100
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=24.55 E-value=74 Score=21.90 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=14.3
Q ss_pred EEEEeCCCCcchHHHHHHHHHhcCC
Q psy5980 45 KLLINSMHGVTGPYVKKIFLEELGA 69 (103)
Q Consensus 45 kVvvD~~nGa~~~~~~~ll~~~lG~ 69 (103)
-+|+|+..|+|+...... .+|-
T Consensus 193 diVlDpF~GSGTT~~aa~---~l~R 214 (231)
T PF01555_consen 193 DIVLDPFAGSGTTAVAAE---ELGR 214 (231)
T ss_dssp -EEEETT-TTTHHHHHHH---HTT-
T ss_pred eeeehhhhccChHHHHHH---HcCC
Confidence 589999999998655433 5664
No 101
>PRK09261 phospho-2-dehydro-3-deoxyheptonate aldolase; Validated
Probab=24.51 E-value=41 Score=26.91 Aligned_cols=14 Identities=29% Similarity=0.700 Sum_probs=12.7
Q ss_pred CcEEEEeCCCCcch
Q psy5980 43 PFKLLINSMHGVTG 56 (103)
Q Consensus 43 ~lkVvvD~~nGa~~ 56 (103)
..+|+|||.||.+.
T Consensus 260 ~~~v~VD~SH~ns~ 273 (349)
T PRK09261 260 PPRIMIDCSHANSG 273 (349)
T ss_pred CCCEEEECCCcccC
Confidence 58999999999886
No 102
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=24.40 E-value=1.7e+02 Score=21.71 Aligned_cols=46 Identities=15% Similarity=0.227 Sum_probs=29.8
Q ss_pred ChHHHHHHHHhhcCchhHHhhhhCCCCCCCcEEEEeCCCCcchHHHHHHHHHhcCCCceeeecCc
Q psy5980 14 SVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINSMHGVTGPYVKKIFLEELGAQPDNAVNTT 78 (103)
Q Consensus 14 ~~~~Yi~~l~~~id~~~i~~~~~~~~~~~~lkVvvD~~nGa~~~~~~~ll~~~lG~~~v~~i~~~ 78 (103)
+.+.|.+.+.+..+ ..|+| .+-|.++..+...+. +.|.+ +..+...
T Consensus 12 ~~~~~~~~~~~~~~----------------~DVvI-VGgGpAGl~AA~~la-~~G~~-V~liEk~ 57 (257)
T PRK04176 12 IVEEYFEKLLDYLE----------------VDVAI-VGAGPSGLTAAYYLA-KAGLK-VAVFERK 57 (257)
T ss_pred HHHHHHHHHHHhcc----------------CCEEE-ECccHHHHHHHHHHH-hCCCe-EEEEecC
Confidence 34667777776654 34555 577888877766676 67875 6555543
No 103
>PF08859 DGC: DGC domain; InterPro: IPR014958 This protein appears to be a zinc binding domain from the conservation of four potential chelating cysteines. The protein is named after a conserved central motif, the function is unknown.
Probab=24.28 E-value=2.1e+02 Score=18.65 Aligned_cols=56 Identities=23% Similarity=0.240 Sum_probs=37.0
Q ss_pred CcEEEEeCCCCcchHHHHHHHHHhcCCCceeeecCccCCCCCCCC-CCCcHHHHHHHHHhhC
Q psy5980 43 PFKLLINSMHGVTGPYVKKIFLEELGAQPDNAVNTTPLPDFGGHH-PDPNLTYAADLVQAMQ 103 (103)
Q Consensus 43 ~lkVvvD~~nGa~~~~~~~ll~~~lG~~~v~~i~~~~Dg~F~g~~-PeP~~~nL~~L~~~V~ 103 (103)
+--|++| |+........|+ +.|......+.-. |=.+..+. -++.++.++++.+.|+
T Consensus 52 ~~iIaID---GC~~~Ca~k~le-~~g~~~~~~i~~t-dlgi~k~~~~~~~~~~i~~~~~~v~ 108 (110)
T PF08859_consen 52 RPIIAID---GCPLCCAKKILE-EAGVKPDEHIVLT-DLGIKKRKGDDVSEEEIEEVVEAVK 108 (110)
T ss_pred CceEEEC---CCHHHHHHHHHH-HcCCCCceEEEEe-ecccccCCCCCCCHHHHHHHHHHHH
Confidence 3568888 888889999999 8887543344444 33343332 5666788887777663
No 104
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=24.25 E-value=1.8e+02 Score=18.24 Aligned_cols=27 Identities=7% Similarity=0.069 Sum_probs=17.8
Q ss_pred CcEEEEeCCCCcchHHHH-----HHHHHhcCCC
Q psy5980 43 PFKLLINSMHGVTGPYVK-----KIFLEELGAQ 70 (103)
Q Consensus 43 ~lkVvvD~~nGa~~~~~~-----~ll~~~lG~~ 70 (103)
+.||++=|++|.|+..+- ++|. +.|.+
T Consensus 2 k~kILvvCgsG~~TS~m~~~ki~~~l~-~~gi~ 33 (94)
T PRK10310 2 KRKIIVACGGAVATSTMAAEEIKELCQ-SHNIP 33 (94)
T ss_pred CCeEEEECCCchhHHHHHHHHHHHHHH-HCCCe
Confidence 358999999999655542 3444 55653
No 105
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=23.75 E-value=1.9e+02 Score=22.61 Aligned_cols=28 Identities=18% Similarity=0.083 Sum_probs=18.5
Q ss_pred CcEEEEeCCCCcchHHHHHHHHHhcCCCcee
Q psy5980 43 PFKLLINSMHGVTGPYVKKIFLEELGAQPDN 73 (103)
Q Consensus 43 ~lkVvvD~~nGa~~~~~~~ll~~~lG~~~v~ 73 (103)
+-+-|+|-+.| +|++.-... +||+..+.
T Consensus 162 ~g~~vlDvGcG--SGILaIAa~-kLGA~~v~ 189 (300)
T COG2264 162 KGKTVLDVGCG--SGILAIAAA-KLGAKKVV 189 (300)
T ss_pred CCCEEEEecCC--hhHHHHHHH-HcCCceEE
Confidence 35789998666 556655555 88985443
No 106
>KOG0025|consensus
Probab=23.09 E-value=1.3e+02 Score=24.13 Aligned_cols=54 Identities=19% Similarity=0.292 Sum_probs=38.9
Q ss_pred EecChHHHHHHHHhhcCchhHHhhhhCCCCCCCcEEEEeCCCCcchHHHHHHHHHhcCCCceeeecCc
Q psy5980 11 VIDSVEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINSMHGVTGPYVKKIFLEELGAQPDNAVNTT 78 (103)
Q Consensus 11 ~~D~~~~Yi~~l~~~id~~~i~~~~~~~~~~~~lkVvvD~~nGa~~~~~~~ll~~~lG~~~v~~i~~~ 78 (103)
.+++-.+|. -|.+++++.+ +=.|+=+.+|.+-+..+-++.+ .+|.+.+..+++.
T Consensus 142 ~VNP~TAyr-mL~dfv~L~~------------GD~vIQNganS~VG~~ViQlak-a~GiktinvVRdR 195 (354)
T KOG0025|consen 142 SVNPCTAYR-MLKDFVQLNK------------GDSVIQNGANSGVGQAVIQLAK-ALGIKTINVVRDR 195 (354)
T ss_pred ccCchHHHH-HHHHHHhcCC------------CCeeeecCcccHHHHHHHHHHH-HhCcceEEEeecC
Confidence 456667774 4567887632 2379999999888888888888 9998755566654
No 107
>PRK08317 hypothetical protein; Provisional
Probab=22.81 E-value=2.4e+02 Score=19.37 Aligned_cols=36 Identities=11% Similarity=0.105 Sum_probs=22.9
Q ss_pred hHHHHHHHHhhcCchhHHhhhhCCCCCCCcEEEEeCCCCcchHHHHHHHH
Q psy5980 15 VEVYLQLMKEIFDFPKLQSLIKGSSGRPPFKLLINSMHGVTGPYVKKIFL 64 (103)
Q Consensus 15 ~~~Yi~~l~~~id~~~i~~~~~~~~~~~~lkVvvD~~nGa~~~~~~~ll~ 64 (103)
...|.+.+.+.+++. +-..|+|.+.|.|. ++..+..
T Consensus 4 ~~~~~~~~~~~~~~~-------------~~~~vLdiG~G~G~-~~~~~a~ 39 (241)
T PRK08317 4 FRRYRARTFELLAVQ-------------PGDRVLDVGCGPGN-DARELAR 39 (241)
T ss_pred HHHHHHHHHHHcCCC-------------CCCEEEEeCCCCCH-HHHHHHH
Confidence 456777777776642 23468999999876 4444444
No 108
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=22.18 E-value=1.1e+02 Score=22.73 Aligned_cols=30 Identities=23% Similarity=0.039 Sum_probs=20.0
Q ss_pred CcEEEEeCCCCcchHHHHHHHHHhcCCCceeee
Q psy5980 43 PFKLLINSMHGVTGPYVKKIFLEELGAQPDNAV 75 (103)
Q Consensus 43 ~lkVvvD~~nGa~~~~~~~ll~~~lG~~~v~~i 75 (103)
.-+.|+|.+.|+|..-+... -+|...|..+
T Consensus 45 ~g~~V~DlG~GTG~La~ga~---~lGa~~V~~v 74 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAA---LLGASRVLAV 74 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHH---hcCCcEEEEE
Confidence 35789999999988655544 4475545443
No 109
>PF00793 DAHP_synth_1: DAHP synthetase I family; InterPro: IPR006218 Members of the 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthetase family catalyse the first step in aromatic amino acid biosynthesis from chorismate. Class I includes bacterial and yeast enzymes; class II includes higher plants and various microorganisms (see IPR002480 from INTERPRO) []. The first step in the common pathway leading to the biosynthesis of aromatic compounds is the stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP). This reaction is catalyzed by DAHP synthase, a metal-activated enzyme, which in microorganisms is the target for negative-feedback regulation by pathway intermediates or by end products. In Escherichia coli there are three DAHP synthetase isoforms, each specifically inhibited by one of the three aromatic amino acids. The crystal structure of the phenylalanine-regulated form of DAHP synthetase shows the fold as is a (beta/alpha)8 barrel with several additional beta strands and alpha helices []. ; GO: 0009058 biosynthetic process; PDB: 3FS2_B 3STF_B 3FYP_D 3QQ1_A 3QPZ_C 3FYO_D 3STC_A 2QKF_D 3STE_C 3QQ0_A ....
Probab=21.95 E-value=41 Score=25.61 Aligned_cols=16 Identities=6% Similarity=0.223 Sum_probs=13.5
Q ss_pred CcEEEEeCCCCcchHH
Q psy5980 43 PFKLLINSMHGVTGPY 58 (103)
Q Consensus 43 ~lkVvvD~~nGa~~~~ 58 (103)
.+.|++||.|+++..-
T Consensus 194 ~lpVivD~SH~~~~~~ 209 (270)
T PF00793_consen 194 HLPVIVDPSHANSRKD 209 (270)
T ss_dssp SSEEEEEHHHHTTTCG
T ss_pred CCCEEECchhhhcccc
Confidence 5899999999988653
No 110
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=21.77 E-value=1e+02 Score=24.28 Aligned_cols=22 Identities=9% Similarity=0.019 Sum_probs=19.0
Q ss_pred CcEEEEeCCCCcchHHHHHHHH
Q psy5980 43 PFKLLINSMHGVTGPYVKKIFL 64 (103)
Q Consensus 43 ~lkVvvD~~nGa~~~~~~~ll~ 64 (103)
++-|+.+.+.|+|+|+.+.+++
T Consensus 91 gf~i~~sl~GGTGSG~gs~l~e 112 (382)
T cd06059 91 GFQITHSLGGGTGSGLGSLLLE 112 (382)
T ss_pred ceEEEEecCCCcchhHHHHHHH
Confidence 4789999999999999888865
No 111
>PRK12755 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=21.76 E-value=48 Score=26.56 Aligned_cols=15 Identities=27% Similarity=0.479 Sum_probs=13.0
Q ss_pred CcEEEEeCCCCcchH
Q psy5980 43 PFKLLINSMHGVTGP 57 (103)
Q Consensus 43 ~lkVvvD~~nGa~~~ 57 (103)
..+|+|||.||.+.-
T Consensus 261 ~~~vmVD~SH~Ns~K 275 (353)
T PRK12755 261 RPRLMIDCSHANSGK 275 (353)
T ss_pred CCcEEecCCcccccc
Confidence 579999999998864
No 112
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=21.66 E-value=2e+02 Score=17.43 Aligned_cols=31 Identities=10% Similarity=0.054 Sum_probs=21.4
Q ss_pred cEEEEeCCCCcchHHHHHHHHHhcCCCceeee
Q psy5980 44 FKLLINSMHGVTGPYVKKIFLEELGAQPDNAV 75 (103)
Q Consensus 44 lkVvvD~~nGa~~~~~~~ll~~~lG~~~v~~i 75 (103)
-.||+=|..|..+..+...|. ++|.+.+..+
T Consensus 66 ~~vv~~c~~g~~s~~~a~~L~-~~G~~~v~~l 96 (105)
T cd01525 66 KIIVIVSHSHKHAALFAAFLV-KCGVPRVCIL 96 (105)
T ss_pred CeEEEEeCCCccHHHHHHHHH-HcCCCCEEEE
Confidence 356666777777766777788 8898655444
No 113
>PRK04182 cytidylate kinase; Provisional
Probab=21.54 E-value=1.9e+02 Score=19.17 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=22.1
Q ss_pred EEEEeCCCCcchHHHHHHHHHhcCCC
Q psy5980 45 KLLINSMHGVTGPYVKKIFLEELGAQ 70 (103)
Q Consensus 45 kVvvD~~nGa~~~~~~~ll~~~lG~~ 70 (103)
.|++..+-|+|...+.+.|.+++|..
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~ 27 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLK 27 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCc
Confidence 58889999999888888887688875
No 114
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=20.64 E-value=1.7e+02 Score=21.22 Aligned_cols=28 Identities=25% Similarity=0.307 Sum_probs=23.3
Q ss_pred CcEEEEeCCCCcchHHHHHHHHHhcCCC
Q psy5980 43 PFKLLINSMHGVTGPYVKKIFLEELGAQ 70 (103)
Q Consensus 43 ~lkVvvD~~nGa~~~~~~~ll~~~lG~~ 70 (103)
.+.|.++...|+|-.-+...+.+++|+.
T Consensus 2 ~~~i~i~G~~GsGKst~~~~la~~~~~~ 29 (217)
T TIGR00017 2 AMIIAIDGPSGAGKSTVAKAVAEKLGYA 29 (217)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 4689999999999888888887678864
No 115
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=20.19 E-value=2.1e+02 Score=18.84 Aligned_cols=26 Identities=27% Similarity=0.300 Sum_probs=22.0
Q ss_pred EEEEeCCCCcchHHHHHHHHHhcCCC
Q psy5980 45 KLLINSMHGVTGPYVKKIFLEELGAQ 70 (103)
Q Consensus 45 kVvvD~~nGa~~~~~~~ll~~~lG~~ 70 (103)
.|++....|+|...+.+.|.+.+|+.
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg~~ 27 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLK 27 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCc
Confidence 58899999999988888887678875
No 116
>PLN02244 tocopherol O-methyltransferase
Probab=20.12 E-value=2.2e+02 Score=21.93 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=15.1
Q ss_pred EEEEeCCCCcchHHHHHHHHHhcCC
Q psy5980 45 KLLINSMHGVTGPYVKKIFLEELGA 69 (103)
Q Consensus 45 kVvvD~~nGa~~~~~~~ll~~~lG~ 69 (103)
.-|+|.+.|.|. .+..+.+ .+|+
T Consensus 120 ~~VLDiGCG~G~-~~~~La~-~~g~ 142 (340)
T PLN02244 120 KRIVDVGCGIGG-SSRYLAR-KYGA 142 (340)
T ss_pred CeEEEecCCCCH-HHHHHHH-hcCC
Confidence 468999999887 3334444 5555
No 117
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=20.11 E-value=2.2e+02 Score=22.21 Aligned_cols=33 Identities=24% Similarity=0.384 Sum_probs=22.5
Q ss_pred EEEEeCCCCcchHHHHHHHHHhcCCCceeeecCcc
Q psy5980 45 KLLINSMHGVTGPYVKKIFLEELGAQPDNAVNTTP 79 (103)
Q Consensus 45 kVvvD~~nGa~~~~~~~ll~~~lG~~~v~~i~~~~ 79 (103)
.++|||=-|.|+ ....+|. .++-..++.+..++
T Consensus 22 giyVD~TlG~GG-HS~~iL~-~l~~g~vigiD~D~ 54 (305)
T TIGR00006 22 GIYIDCTLGFGG-HSKAILE-QLGTGRLIGIDRDP 54 (305)
T ss_pred CEEEEeCCCChH-HHHHHHH-hCCCCEEEEEcCCH
Confidence 589999999888 5567777 66311366665544
Done!